Interactive Phylogenetics Module

Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]
Code Context
        $disabled    = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";

        $selected    = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";

        $num_hits    = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D000691',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '827',
		'num_species' => '39'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'gf_genes' => array(
		'Ah.01g012340' => 'amhyb',
		'Ah.01g013530' => 'amhyb',
		'Ah.03g143080' => 'amhyb',
		'Ah.06g186750' => 'amhyb',
		'Ah.06g186800' => 'amhyb',
		'Ah.07g200050' => 'amhyb',
		'Ah.08g209110' => 'amhyb',
		'Ah.09g229600' => 'amhyb',
		'Ah.09g229610' => 'amhyb',
		'Ah.10g026490' => 'amhyb',
		'Ah.12g065350' => 'amhyb',
		'Ah.13g069310' => 'amhyb',
		'Ah.14g080130' => 'amhyb',
		'Ah.14g081130' => 'amhyb',
		'Ah.14g081140' => 'amhyb',
		'Ah.16g109160' => 'amhyb',
		'Ah.16g109170' => 'amhyb',
		'Ah.16g109370' => 'amhyb',
		'AL3G47720' => 'aly',
		'ATR0012G060' => 'atr',
		'ATR0026G029' => 'atr',
		'ATR0193G043' => 'atr',
		'ATR0561G076' => 'atr',
		'ATR0561G181' => 'atr',
		'ATR0568G014' => 'atr',
		'ATR0568G114' => 'atr',
		'ATR0620G039' => 'atr',
		'ATR0629G125' => 'atr',
		'ATR0661G583' => 'atr',
		'ATR0686G019' => 'atr',
		'ATR0693G232' => 'atr',
		'ATR0697G104' => 'atr',
		'ATR0789G146' => 'atr',
		'ATR0794G066' => 'atr',
		'ATR1127G127' => 'atr',
		'ATR1131G040' => 'atr',
		'ATR1134G004' => 'atr',
		'ATR1134G095' => 'atr',
		'ATR1152G110' => 'atr',
		'ATR1153G065' => 'atr',
		'Atru.chr3.2296' => 'acertr',
		'AUR62000692' => 'cqu',
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		'AUR62005160' => 'cqu',
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		'ClCG09G013830' => 'cla',
		'ClCG10G006760' => 'cla',
		'ClCG11G007310' => 'cla',
		'COL.COLO4_16141' => 'col',
		'Cpa.g.sc202.2' => 'cpa',
		'Cpa.g.sc76.18' => 'cpa',
		'CsaV3_1G031080' => 'csa',
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		'CsaV3_6G009880' => 'csa',
		'CsaV3_7G021240' => 'csa',
		'CsaV3_UNG240600' => 'csa',
		'CSS0003516' => 'camsi',
		'CSS0013023' => 'camsi',
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		'FvH4_7g04123' => 'fve',
		'FvH4_c7g00010' => 'fve',
		'Gorai.012G165300' => 'gra',
		'HanXRQChr00c0452g0574871' => 'han',
		'HanXRQChr01g0029471' => 'han',
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		'HanXRQChr10g0280141' => 'han',
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		'HanXRQChr13g0409991' => 'han',
		'HanXRQChr15g0468361' => 'han',
		'Hma1.2p1_0021F.1_g014270' => 'hma',
		'Hma1.2p1_0026F.1_g016730' => 'hma',
		'Hma1.2p1_0177F.1_g077930' => 'hma',
		'Hma1.2p1_0370F.1_g137540' => 'hma',
		'Hma1.2p1_0637F.1_g193600' => 'hma',
		'Hma1.2p1_1045F.1_g251360' => 'hma',
		'Hma1.2p1_1168F.1_g263120' => 'hma',
		'Hma1.2p1_1640F.1_g295040' => 'hma',
		'Hma1.2p1_2467F.1_g322660' => 'hma',
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		'Hund23384' => 'sun',
		'Hund26399' => 'sun',
		'Hund28766' => 'sun',
		'Hund28768' => 'sun',
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		'Lj1A489G15' => 'lonja',
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		'Lj2P603T27' => 'lonja',
		'Lj2P609T17' => 'lonja',
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		'Lj3C273T2' => 'lonja',
		'Lj3C644G3' => 'lonja',
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		'Lju2092C1T0' => 'lonja',
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		'Lju427C2T0' => 'lonja',
		'Lju50C9T4' => 'lonja',
		'Lju926C12T2' => 'lonja',
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		'Oeu061428.1' => 'oeu',
		'Oeu062087.1' => 'oeu',
		'Oeu062537.1' => 'oeu',
		'Oeu062538.1' => 'oeu',
		'Oeu064387.1' => 'oeu',
		'PGSC0003DMG400002344' => 'stu',
		'PGSC0003DMG400004046' => 'stu',
		'PGSC0003DMG400006418' => 'stu',
		'PGSC0003DMG400008410' => 'stu',
		'PGSC0003DMG400008620' => 'stu',
		'PGSC0003DMG400009504' => 'stu',
		'PGSC0003DMG400009845' => 'stu',
		'PGSC0003DMG400011177' => 'stu',
		'PGSC0003DMG400011629' => 'stu',
		'PGSC0003DMG400013586' => 'stu',
		'PGSC0003DMG400013599' => 'stu',
		'PGSC0003DMG400014534' => 'stu',
		'PGSC0003DMG400016055' => 'stu',
		'PGSC0003DMG400016736' => 'stu',
		'PGSC0003DMG400016866' => 'stu',
		'PGSC0003DMG400017701' => 'stu',
		'PGSC0003DMG400018448' => 'stu',
		'PGSC0003DMG400020751' => 'stu',
		'PGSC0003DMG400021088' => 'stu',
		'PGSC0003DMG400021387' => 'stu',
		'PGSC0003DMG400021640' => 'stu',
		'PGSC0003DMG400021704' => 'stu',
		'PGSC0003DMG400022155' => 'stu',
		'PGSC0003DMG400023544' => 'stu',
		'PGSC0003DMG400023564' => 'stu',
		'PGSC0003DMG400028558' => 'stu',
		'PGSC0003DMG400028618' => 'stu',
		'PGSC0003DMG400029149' => 'stu',
		'PGSC0003DMG400029979' => 'stu',
		'PGSC0003DMG400030069' => 'stu',
		'PGSC0003DMG400031272' => 'stu',
		'PGSC0003DMG400034656' => 'stu',
		'PGSC0003DMG400035151' => 'stu',
		'PGSC0003DMG400035741' => 'stu',
		'PGSC0003DMG400036100' => 'stu',
		'PGSC0003DMG400037683' => 'stu',
		'PGSC0003DMG400038046' => 'stu',
		'PGSC0003DMG400040121' => 'stu',
		'PGSC0003DMG400042113' => 'stu',
		'PGSC0003DMG400042218' => 'stu',
		'PGSC0003DMG400044188' => 'stu',
		'PGSC0003DMG400044323' => 'stu',
		'PGSC0003DMG400045014' => 'stu',
		'PGSC0003DMG400045177' => 'stu',
		'PGSC0003DMG400047199' => 'stu',
		'Potri.017G071366' => 'ptr',
		'RcHm_v2.0_Chr2g0137481' => 'rch',
		'Sc20g0003180' => 'sci',
		'SEGI_00305' => 'sgi',
		'SEGI_02246' => 'sgi',
		'SEGI_03696' => 'sgi',
		'SEGI_05490' => 'sgi',
		'SEGI_05682' => 'sgi',
		'SEGI_05900' => 'sgi',
		'SEGI_06517' => 'sgi',
		'SEGI_12587' => 'sgi',
		'SEGI_13129' => 'sgi',
		'SEGI_16935' => 'sgi',
		'SEGI_18008' => 'sgi',
		'SEGI_18224' => 'sgi',
		'SEGI_20188' => 'sgi',
		'SEGI_20772' => 'sgi',
		'SEGI_20842' => 'sgi',
		'SEGI_22270' => 'sgi',
		'SEGI_22705' => 'sgi',
		'SEGI_23638' => 'sgi',
		'SEGI_23928' => 'sgi',
		'SEGI_24790' => 'sgi',
		'SEGI_28421' => 'sgi',
		'SEGI_28832' => 'sgi',
		'SEGI_29884' => 'sgi',
		'SEGI_30829' => 'sgi',
		'SEGI_35046' => 'sgi',
		'SEGI_35582' => 'sgi',
		'SEGI_37882' => 'sgi',
		'SEGI_39680' => 'sgi',
		'SEGI_40069' => 'sgi',
		'SEGI_40087' => 'sgi',
		'SEGI_41606' => 'sgi',
		'SGA_v2.0_scaffold50G18578' => 'sas',
		'SHI00293' => 'shi',
		'SHI00389' => 'shi',
		'SHI00445' => 'shi',
		'SHI01000' => 'shi',
		'SHI01503' => 'shi',
		'SHI01718' => 'shi',
		'SHI03454' => 'shi',
		'SHI03493' => 'shi',
		'SHI03494' => 'shi',
		'SHI03628' => 'shi',
		'SHI04457' => 'shi',
		'SHI04691' => 'shi',
		'SHI04829' => 'shi',
		'SHI05225' => 'shi',
		'SHI06326' => 'shi',
		'SHI06505' => 'shi',
		'SHI06770' => 'shi',
		'SHI07388' => 'shi',
		'SHI07582' => 'shi',
		'SHI07583' => 'shi',
		'SHI08271' => 'shi',
		'SHI10619' => 'shi',
		'SHI10892' => 'shi',
		'SHI10910' => 'shi',
		'SHI10911' => 'shi',
		'SHI14326' => 'shi',
		'SHI14681' => 'shi',
		'SHI15017' => 'shi',
		'SHI15096' => 'shi',
		'SHI15120' => 'shi',
		'SHI15274' => 'shi',
		'SHI16232' => 'shi',
		'SHI16811' => 'shi',
		'SHI17386' => 'shi',
		'SHI17926' => 'shi',
		'SHI18293' => 'shi',
		'SHI20489' => 'shi',
		'SHI20658' => 'shi',
		'SHI20663' => 'shi',
		'SHI21566' => 'shi',
		'SHI22547' => 'shi',
		'SHI22708' => 'shi',
		'SHI22709' => 'shi',
		'SHI22878' => 'shi',
		'SHI22879' => 'shi',
		'SHI23024' => 'shi',
		'SHI25053' => 'shi',
		'SHI25076' => 'shi',
		'SHI25116' => 'shi',
		'SHI25381' => 'shi',
		'SHI25535' => 'shi',
		'SHI25740' => 'shi',
		'SHI25991' => 'shi',
		'SHI26344' => 'shi',
		'SHI26345' => 'shi',
		'SHI27097' => 'shi',
		'SHI27140' => 'shi',
		'SHI27178' => 'shi',
		'SHI27207' => 'shi',
		'SHI27225' => 'shi',
		'SHI27734' => 'shi',
		'SHI27806' => 'shi',
		'SHI28576' => 'shi',
		'SHI29081' => 'shi',
		'SHI30038' => 'shi',
		'SHI30394' => 'shi',
		'SHI30652' => 'shi',
		'SHI32154' => 'shi',
		'SHI32205' => 'shi',
		'SHI32365' => 'shi',
		'SHI32439' => 'shi',
		'SHI32505' => 'shi',
		'SHI32626' => 'shi',
		'SHI32714' => 'shi',
		'SHI32715' => 'shi',
		'SHI32716' => 'shi',
		'SHI33118' => 'shi',
		'SHI33318' => 'shi',
		'SHI33373' => 'shi',
		'SHI33512' => 'shi',
		'SHI33625' => 'shi',
		'SHI34327' => 'shi',
		'SHI35604' => 'shi',
		'SHI36119' => 'shi',
		'SHI36120' => 'shi',
		'SHI44959' => 'shi',
		'SHI46406' => 'shi',
		'SHI48191' => 'shi',
		'SHI48192' => 'shi',
		'Solyc10g150111.1' => 'sly',
		'Solyc12g062340.2' => 'sly',
		'Sopen00g001750' => 'spe',
		'Sopen00g001820' => 'spe',
		'Sopen00g001830' => 'spe',
		'Sopen00g001890' => 'spe',
		'Sopen00g002240' => 'spe',
		'Sopen00g003950' => 'spe',
		'Sopen00g004130' => 'spe',
		'Sopen00g004810' => 'spe',
		'Sopen00g005120' => 'spe',
		'Sopen00g005190' => 'spe',
		'Sopen00g007000' => 'spe',
		'Sopen00g007210' => 'spe',
		'Sopen00g012840' => 'spe',
		'Sopen00g013060' => 'spe',
		'Sopen00g013610' => 'spe',
		'Sopen00g013630' => 'spe',
		'Sopen01g004610' => 'spe',
		'Sopen01g007660' => 'spe',
		'Sopen01g007750' => 'spe',
		'Sopen01g007760' => 'spe',
		'Sopen01g007770' => 'spe',
		'Sopen01g007860' => 'spe',
		'Sopen01g009130' => 'spe',
		'Sopen01g009820' => 'spe',
		'Sopen01g011240' => 'spe',
		'Sopen01g012740' => 'spe',
		'Sopen01g013840' => 'spe',
		'Sopen01g013850' => 'spe',
		'Sopen01g016140' => 'spe',
		'Sopen01g016150' => 'spe',
		'Sopen01g016830' => 'spe',
		'Sopen01g017260' => 'spe',
		'Sopen01g019000' => 'spe',
		'Sopen01g019690' => 'spe',
		'Sopen01g022160' => 'spe',
		'Sopen01g024000' => 'spe',
		'Sopen01g024670' => 'spe',
		'Sopen01g024770' => 'spe',
		'Sopen01g024900' => 'spe',
		'Sopen01g025130' => 'spe',
		'Sopen01g026370' => 'spe',
		'Sopen01g041640' => 'spe',
		'Sopen01g046930' => 'spe',
		'Sopen02g001360' => 'spe',
		'Sopen02g002010' => 'spe',
		'Sopen02g003600' => 'spe',
		'Sopen02g003730' => 'spe',
		'Sopen02g005430' => 'spe',
		'Sopen02g005510' => 'spe',
		'Sopen02g006840' => 'spe',
		'Sopen02g007390' => 'spe',
		'Sopen02g007420' => 'spe',
		'Sopen02g007540' => 'spe',
		'Sopen02g007920' => 'spe',
		'Sopen02g008960' => 'spe',
		'Sopen02g009450' => 'spe',
		'Sopen02g009460' => 'spe',
		'Sopen02g011320' => 'spe',
		'Sopen02g012680' => 'spe',
		'Sopen02g018090' => 'spe',
		'Sopen02g022140' => 'spe',
		'Sopen03g010330' => 'spe',
		'Sopen03g013130' => 'spe',
		'Sopen03g013180' => 'spe',
		'Sopen03g013230' => 'spe',
		'Sopen03g014110' => 'spe',
		'Sopen03g015260' => 'spe',
		'Sopen03g015790' => 'spe',
		'Sopen03g018360' => 'spe',
		'Sopen03g024470' => 'spe',
		'Sopen03g026800' => 'spe',
		'Sopen04g003180' => 'spe',
		'Sopen04g008260' => 'spe',
		'Sopen04g010320' => 'spe',
		'Sopen04g011020' => 'spe',
		'Sopen04g011200' => 'spe',
		'Sopen04g011280' => 'spe',
		'Sopen04g021910' => 'spe',
		'Sopen04g023870' => 'spe',
		'Sopen05g009880' => 'spe',
		'Sopen05g011580' => 'spe',
		'Sopen05g012230' => 'spe',
		'Sopen05g012500' => 'spe',
		'Sopen05g012560' => 'spe',
		'Sopen05g012570' => 'spe',
		'Sopen05g012760' => 'spe',
		'Sopen05g013710' => 'spe',
		'Sopen05g015050' => 'spe',
		'Sopen05g026090' => 'spe',
		'Sopen05g028020' => 'spe',
		'Sopen05g028610' => 'spe',
		'Sopen05g029300' => 'spe',
		'Sopen06g005520' => 'spe',
		'Sopen06g006750' => 'spe',
		'Sopen06g008160' => 'spe',
		'Sopen06g009120' => 'spe',
		'Sopen06g013550' => 'spe',
		'Sopen06g015340' => 'spe',
		'Sopen06g018330' => 'spe',
		'Sopen06g021630' => 'spe',
		'Sopen06g021650' => 'spe',
		'Sopen07g006730' => 'spe',
		'Sopen07g008690' => 'spe',
		'Sopen07g008700' => 'spe',
		'Sopen07g008720' => 'spe',
		'Sopen07g008870' => 'spe',
		'Sopen07g009400' => 'spe',
		'Sopen07g009410' => 'spe',
		'Sopen07g009470' => 'spe',
		'Sopen07g009540' => 'spe',
		'Sopen07g011060' => 'spe',
		'Sopen07g011110' => 'spe',
		'Sopen07g011820' => 'spe',
		'Sopen07g013260' => 'spe',
		'Sopen07g014740' => 'spe',
		'Sopen07g015160' => 'spe',
		'Sopen07g015230' => 'spe',
		'Sopen07g016240' => 'spe',
		'Sopen07g017200' => 'spe',
		'Sopen07g017810' => 'spe',
		'Sopen07g019030' => 'spe',
		'Sopen07g020430' => 'spe',
		'Sopen07g021010' => 'spe',
		'Sopen07g021340' => 'spe',
		'Sopen07g022950' => 'spe',
		'Sopen07g027860' => 'spe',
		'Sopen08g007820' => 'spe',
		'Sopen08g009330' => 'spe',
		'Sopen08g012310' => 'spe',
		'Sopen08g012560' => 'spe',
		'Sopen08g014040' => 'spe',
		'Sopen08g014650' => 'spe',
		'Sopen08g017020' => 'spe',
		'Sopen08g018300' => 'spe',
		'Sopen08g020530' => 'spe',
		'Sopen09g008590' => 'spe',
		'Sopen09g008780' => 'spe',
		'Sopen09g011540' => 'spe',
		'Sopen09g011920' => 'spe',
		'Sopen09g014170' => 'spe',
		'Sopen09g016520' => 'spe',
		'Sopen09g021030' => 'spe',
		'Sopen09g023110' => 'spe',
		'Sopen09g024750' => 'spe',
		'Sopen09g025230' => 'spe',
		'Sopen09g025600' => 'spe',
		'Sopen09g034660' => 'spe',
		'Sopen10g006700' => 'spe',
		'Sopen10g009130' => 'spe',
		'Sopen10g009140' => 'spe',
		'Sopen10g009560' => 'spe',
		'Sopen10g010340' => 'spe',
		'Sopen10g011040' => 'spe',
		'Sopen10g013650' => 'spe',
		'Sopen10g014130' => 'spe',
		'Sopen10g014140' => 'spe',
		'Sopen10g014760' => 'spe',
		'Sopen10g015080' => 'spe',
		'Sopen10g015830' => 'spe',
		'Sopen10g018240' => 'spe',
		'Sopen10g018300' => 'spe',
		'Sopen10g018350' => 'spe',
		'Sopen10g018460' => 'spe',
		'Sopen10g018670' => 'spe',
		'Sopen10g019040' => 'spe',
		'Sopen10g019330' => 'spe',
		'Sopen10g019340' => 'spe',
		'Sopen10g019360' => 'spe',
		'Sopen10g019370' => 'spe',
		'Sopen10g020620' => 'spe',
		'Sopen10g021550' => 'spe',
		'Sopen10g022160' => 'spe',
		'Sopen10g023540' => 'spe',
		'Sopen10g023570' => 'spe',
		'Sopen10g023580' => 'spe',
		'Sopen10g023600' => 'spe',
		'Sopen10g023620' => 'spe',
		'Sopen10g023650' => 'spe',
		'Sopen10g024800' => 'spe',
		'Sopen10g026170' => 'spe',
		'Sopen11g007790' => 'spe',
		'Sopen11g010170' => 'spe',
		'Sopen11g010580' => 'spe',
		'Sopen11g013420' => 'spe',
		'Sopen11g016330' => 'spe',
		'Sopen11g017010' => 'spe',
		'Sopen11g018110' => 'spe',
		'Sopen11g018960' => 'spe',
		'Sopen11g019000' => 'spe',
		'Sopen11g019970' => 'spe',
		'Sopen11g020340' => 'spe',
		'Sopen11g020970' => 'spe',
		'Sopen12g008510' => 'spe',
		'Sopen12g008910' => 'spe',
		'Sopen12g009010' => 'spe',
		'Sopen12g009120' => 'spe',
		'Sopen12g009340' => 'spe',
		'Sopen12g009580' => 'spe',
		'Sopen12g010190' => 'spe',
		'Sopen12g010320' => 'spe',
		'Sopen12g010370' => 'spe',
		'Sopen12g012140' => 'spe',
		'Sopen12g012700' => 'spe',
		'Sopen12g013490' => 'spe',
		'Sopen12g014290' => 'spe',
		'Sopen12g015060' => 'spe',
		'Sopen12g015610' => 'spe',
		'Sopen12g018380' => 'spe',
		'Sopen12g019150' => 'spe',
		'Sopen12g020560' => 'spe',
		'Sopen12g023320' => 'spe',
		'Sp3g24190' => 'spa',
		'Sp4g07270' => 'spa',
		'Sp4g07530' => 'spa',
		'Sp4g07670' => 'spa',
		'Sp6g09360' => 'spa',
		'Sp7g04180' => 'spa',
		'Sp7g04980' => 'spa',
		'Sp7g08200' => 'spa',
		'Sp7g09660' => 'spa',
		'SpUn0081_0010' => 'spa',
		'THA.LOC104803417' => 'tha',
		'THA.LOC104817059' => 'tha',
		'Thecc.01G188700' => 'tca',
		'Thecc.05G106700' => 'tca',
		'Thecc.06G068800' => 'tca',
		'Thecc.07G189100' => 'tca',
		'Thecc.09G172800' => 'tca',
		'Thhalv10023044m.g' => 'esa',
		'Thhalv10023881m.g' => 'esa',
		'Thhalv10024067m.g' => 'esa'
	),
	'gf_id' => 'HOM05D000691',
	'gf_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'gf_types_configuration' => array(
		'HOMFAM' => array(
			'order' => '1',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		),
		'ORTHOFAM' => array(
			'order' => '2',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		)
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'allow_async_use' => true,
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D000691'
	),
	'data_identifier' => 'HOM05D000691',
	'data_type' => 'gf_id'
)
$sidebar_info = array(
	'gf_id' => 'HOM05D000691',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '827',
	'num_species' => '39'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$gf_genes = array(
	'Ah.01g012340' => 'amhyb',
	'Ah.01g013530' => 'amhyb',
	'Ah.03g143080' => 'amhyb',
	'Ah.06g186750' => 'amhyb',
	'Ah.06g186800' => 'amhyb',
	'Ah.07g200050' => 'amhyb',
	'Ah.08g209110' => 'amhyb',
	'Ah.09g229600' => 'amhyb',
	'Ah.09g229610' => 'amhyb',
	'Ah.10g026490' => 'amhyb',
	'Ah.12g065350' => 'amhyb',
	'Ah.13g069310' => 'amhyb',
	'Ah.14g080130' => 'amhyb',
	'Ah.14g081130' => 'amhyb',
	'Ah.14g081140' => 'amhyb',
	'Ah.16g109160' => 'amhyb',
	'Ah.16g109170' => 'amhyb',
	'Ah.16g109370' => 'amhyb',
	'AL3G47720' => 'aly',
	'ATR0012G060' => 'atr',
	'ATR0026G029' => 'atr',
	'ATR0193G043' => 'atr',
	'ATR0561G076' => 'atr',
	'ATR0561G181' => 'atr',
	'ATR0568G014' => 'atr',
	'ATR0568G114' => 'atr',
	'ATR0620G039' => 'atr',
	'ATR0629G125' => 'atr',
	'ATR0661G583' => 'atr',
	'ATR0686G019' => 'atr',
	'ATR0693G232' => 'atr',
	'ATR0697G104' => 'atr',
	'ATR0789G146' => 'atr',
	'ATR0794G066' => 'atr',
	'ATR1127G127' => 'atr',
	'ATR1131G040' => 'atr',
	'ATR1134G004' => 'atr',
	'ATR1134G095' => 'atr',
	'ATR1152G110' => 'atr',
	'ATR1153G065' => 'atr',
	'Atru.chr3.2296' => 'acertr',
	'AUR62000692' => 'cqu',
	'AUR62001473' => 'cqu',
	'AUR62001812' => 'cqu',
	'AUR62002706' => 'cqu',
	'AUR62003904' => 'cqu',
	'AUR62003905' => 'cqu',
	'AUR62004840' => 'cqu',
	'AUR62005160' => 'cqu',
	'AUR62005604' => 'cqu',
	'AUR62005891' => 'cqu',
	'AUR62007290' => 'cqu',
	'AUR62007502' => 'cqu',
	'AUR62007923' => 'cqu',
	'AUR62009972' => 'cqu',
	'AUR62010488' => 'cqu',
	'AUR62010643' => 'cqu',
	'AUR62012637' => 'cqu',
	'AUR62013492' => 'cqu',
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	'SHI27097' => 'shi',
	'SHI27140' => 'shi',
	'SHI27178' => 'shi',
	'SHI27207' => 'shi',
	'SHI27225' => 'shi',
	'SHI27734' => 'shi',
	'SHI27806' => 'shi',
	'SHI28576' => 'shi',
	'SHI29081' => 'shi',
	'SHI30038' => 'shi',
	'SHI30394' => 'shi',
	'SHI30652' => 'shi',
	'SHI32154' => 'shi',
	'SHI32205' => 'shi',
	'SHI32365' => 'shi',
	'SHI32439' => 'shi',
	'SHI32505' => 'shi',
	'SHI32626' => 'shi',
	'SHI32714' => 'shi',
	'SHI32715' => 'shi',
	'SHI32716' => 'shi',
	'SHI33118' => 'shi',
	'SHI33318' => 'shi',
	'SHI33373' => 'shi',
	'SHI33512' => 'shi',
	'SHI33625' => 'shi',
	'SHI34327' => 'shi',
	'SHI35604' => 'shi',
	'SHI36119' => 'shi',
	'SHI36120' => 'shi',
	'SHI44959' => 'shi',
	'SHI46406' => 'shi',
	'SHI48191' => 'shi',
	'SHI48192' => 'shi',
	'Solyc10g150111.1' => 'sly',
	'Solyc12g062340.2' => 'sly',
	'Sopen00g001750' => 'spe',
	'Sopen00g001820' => 'spe',
	'Sopen00g001830' => 'spe',
	'Sopen00g001890' => 'spe',
	'Sopen00g002240' => 'spe',
	'Sopen00g003950' => 'spe',
	'Sopen00g004130' => 'spe',
	'Sopen00g004810' => 'spe',
	'Sopen00g005120' => 'spe',
	'Sopen00g005190' => 'spe',
	'Sopen00g007000' => 'spe',
	'Sopen00g007210' => 'spe',
	'Sopen00g012840' => 'spe',
	'Sopen00g013060' => 'spe',
	'Sopen00g013610' => 'spe',
	'Sopen00g013630' => 'spe',
	'Sopen01g004610' => 'spe',
	'Sopen01g007660' => 'spe',
	'Sopen01g007750' => 'spe',
	'Sopen01g007760' => 'spe',
	'Sopen01g007770' => 'spe',
	'Sopen01g007860' => 'spe',
	'Sopen01g009130' => 'spe',
	'Sopen01g009820' => 'spe',
	'Sopen01g011240' => 'spe',
	'Sopen01g012740' => 'spe',
	'Sopen01g013840' => 'spe',
	'Sopen01g013850' => 'spe',
	'Sopen01g016140' => 'spe',
	'Sopen01g016150' => 'spe',
	'Sopen01g016830' => 'spe',
	'Sopen01g017260' => 'spe',
	'Sopen01g019000' => 'spe',
	'Sopen01g019690' => 'spe',
	'Sopen01g022160' => 'spe',
	'Sopen01g024000' => 'spe',
	'Sopen01g024670' => 'spe',
	'Sopen01g024770' => 'spe',
	'Sopen01g024900' => 'spe',
	'Sopen01g025130' => 'spe',
	'Sopen01g026370' => 'spe',
	'Sopen01g041640' => 'spe',
	'Sopen01g046930' => 'spe',
	'Sopen02g001360' => 'spe',
	'Sopen02g002010' => 'spe',
	'Sopen02g003600' => 'spe',
	'Sopen02g003730' => 'spe',
	'Sopen02g005430' => 'spe',
	'Sopen02g005510' => 'spe',
	'Sopen02g006840' => 'spe',
	'Sopen02g007390' => 'spe',
	'Sopen02g007420' => 'spe',
	'Sopen02g007540' => 'spe',
	'Sopen02g007920' => 'spe',
	'Sopen02g008960' => 'spe',
	'Sopen02g009450' => 'spe',
	'Sopen02g009460' => 'spe',
	'Sopen02g011320' => 'spe',
	'Sopen02g012680' => 'spe',
	'Sopen02g018090' => 'spe',
	'Sopen02g022140' => 'spe',
	'Sopen03g010330' => 'spe',
	'Sopen03g013130' => 'spe',
	'Sopen03g013180' => 'spe',
	'Sopen03g013230' => 'spe',
	'Sopen03g014110' => 'spe',
	'Sopen03g015260' => 'spe',
	'Sopen03g015790' => 'spe',
	'Sopen03g018360' => 'spe',
	'Sopen03g024470' => 'spe',
	'Sopen03g026800' => 'spe',
	'Sopen04g003180' => 'spe',
	'Sopen04g008260' => 'spe',
	'Sopen04g010320' => 'spe',
	'Sopen04g011020' => 'spe',
	'Sopen04g011200' => 'spe',
	'Sopen04g011280' => 'spe',
	'Sopen04g021910' => 'spe',
	'Sopen04g023870' => 'spe',
	'Sopen05g009880' => 'spe',
	'Sopen05g011580' => 'spe',
	'Sopen05g012230' => 'spe',
	'Sopen05g012500' => 'spe',
	'Sopen05g012560' => 'spe',
	'Sopen05g012570' => 'spe',
	'Sopen05g012760' => 'spe',
	'Sopen05g013710' => 'spe',
	'Sopen05g015050' => 'spe',
	'Sopen05g026090' => 'spe',
	'Sopen05g028020' => 'spe',
	'Sopen05g028610' => 'spe',
	'Sopen05g029300' => 'spe',
	'Sopen06g005520' => 'spe',
	'Sopen06g006750' => 'spe',
	'Sopen06g008160' => 'spe',
	'Sopen06g009120' => 'spe',
	'Sopen06g013550' => 'spe',
	'Sopen06g015340' => 'spe',
	'Sopen06g018330' => 'spe',
	'Sopen06g021630' => 'spe',
	'Sopen06g021650' => 'spe',
	'Sopen07g006730' => 'spe',
	'Sopen07g008690' => 'spe',
	'Sopen07g008700' => 'spe',
	'Sopen07g008720' => 'spe',
	'Sopen07g008870' => 'spe',
	'Sopen07g009400' => 'spe',
	'Sopen07g009410' => 'spe',
	'Sopen07g009470' => 'spe',
	'Sopen07g009540' => 'spe',
	'Sopen07g011060' => 'spe',
	'Sopen07g011110' => 'spe',
	'Sopen07g011820' => 'spe',
	'Sopen07g013260' => 'spe',
	'Sopen07g014740' => 'spe',
	'Sopen07g015160' => 'spe',
	'Sopen07g015230' => 'spe',
	'Sopen07g016240' => 'spe',
	'Sopen07g017200' => 'spe',
	'Sopen07g017810' => 'spe',
	'Sopen07g019030' => 'spe',
	'Sopen07g020430' => 'spe',
	'Sopen07g021010' => 'spe',
	'Sopen07g021340' => 'spe',
	'Sopen07g022950' => 'spe',
	'Sopen07g027860' => 'spe',
	'Sopen08g007820' => 'spe',
	'Sopen08g009330' => 'spe',
	'Sopen08g012310' => 'spe',
	'Sopen08g012560' => 'spe',
	'Sopen08g014040' => 'spe',
	'Sopen08g014650' => 'spe',
	'Sopen08g017020' => 'spe',
	'Sopen08g018300' => 'spe',
	'Sopen08g020530' => 'spe',
	'Sopen09g008590' => 'spe',
	'Sopen09g008780' => 'spe',
	'Sopen09g011540' => 'spe',
	'Sopen09g011920' => 'spe',
	'Sopen09g014170' => 'spe',
	'Sopen09g016520' => 'spe',
	'Sopen09g021030' => 'spe',
	'Sopen09g023110' => 'spe',
	'Sopen09g024750' => 'spe',
	'Sopen09g025230' => 'spe',
	'Sopen09g025600' => 'spe',
	'Sopen09g034660' => 'spe',
	'Sopen10g006700' => 'spe',
	'Sopen10g009130' => 'spe',
	'Sopen10g009140' => 'spe',
	'Sopen10g009560' => 'spe',
	'Sopen10g010340' => 'spe',
	'Sopen10g011040' => 'spe',
	'Sopen10g013650' => 'spe',
	'Sopen10g014130' => 'spe',
	'Sopen10g014140' => 'spe',
	'Sopen10g014760' => 'spe',
	'Sopen10g015080' => 'spe',
	'Sopen10g015830' => 'spe',
	'Sopen10g018240' => 'spe',
	'Sopen10g018300' => 'spe',
	'Sopen10g018350' => 'spe',
	'Sopen10g018460' => 'spe',
	'Sopen10g018670' => 'spe',
	'Sopen10g019040' => 'spe',
	'Sopen10g019330' => 'spe',
	'Sopen10g019340' => 'spe',
	'Sopen10g019360' => 'spe',
	'Sopen10g019370' => 'spe',
	'Sopen10g020620' => 'spe',
	'Sopen10g021550' => 'spe',
	'Sopen10g022160' => 'spe',
	'Sopen10g023540' => 'spe',
	'Sopen10g023570' => 'spe',
	'Sopen10g023580' => 'spe',
	'Sopen10g023600' => 'spe',
	'Sopen10g023620' => 'spe',
	'Sopen10g023650' => 'spe',
	'Sopen10g024800' => 'spe',
	'Sopen10g026170' => 'spe',
	'Sopen11g007790' => 'spe',
	'Sopen11g010170' => 'spe',
	'Sopen11g010580' => 'spe',
	'Sopen11g013420' => 'spe',
	'Sopen11g016330' => 'spe',
	'Sopen11g017010' => 'spe',
	'Sopen11g018110' => 'spe',
	'Sopen11g018960' => 'spe',
	'Sopen11g019000' => 'spe',
	'Sopen11g019970' => 'spe',
	'Sopen11g020340' => 'spe',
	'Sopen11g020970' => 'spe',
	'Sopen12g008510' => 'spe',
	'Sopen12g008910' => 'spe',
	'Sopen12g009010' => 'spe',
	'Sopen12g009120' => 'spe',
	'Sopen12g009340' => 'spe',
	'Sopen12g009580' => 'spe',
	'Sopen12g010190' => 'spe',
	'Sopen12g010320' => 'spe',
	'Sopen12g010370' => 'spe',
	'Sopen12g012140' => 'spe',
	'Sopen12g012700' => 'spe',
	'Sopen12g013490' => 'spe',
	'Sopen12g014290' => 'spe',
	'Sopen12g015060' => 'spe',
	'Sopen12g015610' => 'spe',
	'Sopen12g018380' => 'spe',
	'Sopen12g019150' => 'spe',
	'Sopen12g020560' => 'spe',
	'Sopen12g023320' => 'spe',
	'Sp3g24190' => 'spa',
	'Sp4g07270' => 'spa',
	'Sp4g07530' => 'spa',
	'Sp4g07670' => 'spa',
	'Sp6g09360' => 'spa',
	'Sp7g04180' => 'spa',
	'Sp7g04980' => 'spa',
	'Sp7g08200' => 'spa',
	'Sp7g09660' => 'spa',
	'SpUn0081_0010' => 'spa',
	'THA.LOC104803417' => 'tha',
	'THA.LOC104817059' => 'tha',
	'Thecc.01G188700' => 'tca',
	'Thecc.05G106700' => 'tca',
	'Thecc.06G068800' => 'tca',
	'Thecc.07G189100' => 'tca',
	'Thecc.09G172800' => 'tca',
	'Thhalv10023044m.g' => 'esa',
	'Thhalv10023881m.g' => 'esa',
	'Thhalv10024067m.g' => 'esa'
)
$gf_id = 'HOM05D000691'
$gf_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$gf_types_configuration = array(
	'HOMFAM' => array(
		'order' => '1',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	),
	'ORTHOFAM' => array(
		'order' => '2',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	)
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$allow_async_use = true
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D000691'
)
$data_identifier = 'HOM05D000691'
$data_type = 'gf_id'
$species_gene_counts = array(
	'amhyb' => (int) 18,
	'aly' => (int) 1,
	'atr' => (int) 21,
	'acertr' => (int) 1,
	'cqu' => (int) 90,
	'bol' => (int) 1,
	'can' => (int) 7,
	'cil' => (int) 3,
	'cla' => (int) 15,
	'col' => (int) 1,
	'cpa' => (int) 2,
	'csa' => (int) 7,
	'camsi' => (int) 10,
	'din' => (int) 1,
	'dzi' => (int) 2,
	'bvu' => (int) 18,
	'fve' => (int) 22,
	'gra' => (int) 1,
	'han' => (int) 7,
	'hma' => (int) 9,
	'sun' => (int) 16,
	'lonja' => (int) 46,
	'mes' => (int) 8,
	'mbi' => (int) 2,
	'cme' => (int) 6,
	'oeu' => (int) 110,
	'stu' => (int) 45,
	'ptr' => (int) 1,
	'rch' => (int) 1,
	'sci' => (int) 1,
	'sgi' => (int) 31,
	'sas' => (int) 1,
	'shi' => (int) 89,
	'sly' => (int) 2,
	'spe' => (int) 211,
	'spa' => (int) 10,
	'tha' => (int) 2,
	'tca' => (int) 5,
	'esa' => (int) 3
)
$gf_gene_species = 'esa'
$gf_gene_id = 'Thhalv10024067m.g'
$species_info = array(
	'species' => 'acertr',
	'common_name' => 'Acer truncatum',
	'tax_id' => '47965',
	'version' => 'v2.0'
)
$local_species = 'acertr'
$disabled = ''
$selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Analysis/custom_tree_creation.ctp, line 27
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933

Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]
Code Context
        $disabled    = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";

        $selected    = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";

        $num_hits    = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D000691',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '827',
		'num_species' => '39'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'gf_genes' => array(
		'Ah.01g012340' => 'amhyb',
		'Ah.01g013530' => 'amhyb',
		'Ah.03g143080' => 'amhyb',
		'Ah.06g186750' => 'amhyb',
		'Ah.06g186800' => 'amhyb',
		'Ah.07g200050' => 'amhyb',
		'Ah.08g209110' => 'amhyb',
		'Ah.09g229600' => 'amhyb',
		'Ah.09g229610' => 'amhyb',
		'Ah.10g026490' => 'amhyb',
		'Ah.12g065350' => 'amhyb',
		'Ah.13g069310' => 'amhyb',
		'Ah.14g080130' => 'amhyb',
		'Ah.14g081130' => 'amhyb',
		'Ah.14g081140' => 'amhyb',
		'Ah.16g109160' => 'amhyb',
		'Ah.16g109170' => 'amhyb',
		'Ah.16g109370' => 'amhyb',
		'AL3G47720' => 'aly',
		'ATR0012G060' => 'atr',
		'ATR0026G029' => 'atr',
		'ATR0193G043' => 'atr',
		'ATR0561G076' => 'atr',
		'ATR0561G181' => 'atr',
		'ATR0568G014' => 'atr',
		'ATR0568G114' => 'atr',
		'ATR0620G039' => 'atr',
		'ATR0629G125' => 'atr',
		'ATR0661G583' => 'atr',
		'ATR0686G019' => 'atr',
		'ATR0693G232' => 'atr',
		'ATR0697G104' => 'atr',
		'ATR0789G146' => 'atr',
		'ATR0794G066' => 'atr',
		'ATR1127G127' => 'atr',
		'ATR1131G040' => 'atr',
		'ATR1134G004' => 'atr',
		'ATR1134G095' => 'atr',
		'ATR1152G110' => 'atr',
		'ATR1153G065' => 'atr',
		'Atru.chr3.2296' => 'acertr',
		'AUR62000692' => 'cqu',
		'AUR62001473' => 'cqu',
		'AUR62001812' => 'cqu',
		'AUR62002706' => 'cqu',
		'AUR62003904' => 'cqu',
		'AUR62003905' => 'cqu',
		'AUR62004840' => 'cqu',
		'AUR62005160' => 'cqu',
		'AUR62005604' => 'cqu',
		'AUR62005891' => 'cqu',
		'AUR62007290' => 'cqu',
		'AUR62007502' => 'cqu',
		'AUR62007923' => 'cqu',
		'AUR62009972' => 'cqu',
		'AUR62010488' => 'cqu',
		'AUR62010643' => 'cqu',
		'AUR62012637' => 'cqu',
		'AUR62013492' => 'cqu',
		'AUR62014239' => 'cqu',
		'AUR62014878' => 'cqu',
		'AUR62015857' => 'cqu',
		'AUR62016224' => 'cqu',
		'AUR62017430' => 'cqu',
		'AUR62017467' => 'cqu',
		'AUR62018234' => 'cqu',
		'AUR62019060' => 'cqu',
		'AUR62019607' => 'cqu',
		'AUR62019661' => 'cqu',
		'AUR62022775' => 'cqu',
		'AUR62023603' => 'cqu',
		'AUR62024563' => 'cqu',
		'AUR62026199' => 'cqu',
		'AUR62026905' => 'cqu',
		'AUR62028639' => 'cqu',
		'AUR62029168' => 'cqu',
		'AUR62029551' => 'cqu',
		'AUR62029860' => 'cqu',
		'AUR62030164' => 'cqu',
		'AUR62031208' => 'cqu',
		'AUR62031287' => 'cqu',
		'AUR62031817' => 'cqu',
		'AUR62032126' => 'cqu',
		'AUR62032358' => 'cqu',
		'AUR62032884' => 'cqu',
		'AUR62032892' => 'cqu',
		'AUR62033082' => 'cqu',
		'AUR62033100' => 'cqu',
		'AUR62033255' => 'cqu',
		'AUR62033698' => 'cqu',
		'AUR62033757' => 'cqu',
		'AUR62034760' => 'cqu',
		'AUR62034860' => 'cqu',
		'AUR62035179' => 'cqu',
		'AUR62035881' => 'cqu',
		'AUR62036824' => 'cqu',
		'AUR62036876' => 'cqu',
		'AUR62037319' => 'cqu',
		'AUR62037362' => 'cqu',
		'AUR62037541' => 'cqu',
		'AUR62037853' => 'cqu',
		'AUR62038299' => 'cqu',
		'AUR62038563' => 'cqu',
		'AUR62038564' => 'cqu',
		'AUR62038594' => 'cqu',
		'AUR62038792' => 'cqu',
		'AUR62038947' => 'cqu',
		'AUR62039030' => 'cqu',
		'AUR62039231' => 'cqu',
		'AUR62039452' => 'cqu',
		'AUR62040334' => 'cqu',
		'AUR62040869' => 'cqu',
		'AUR62040870' => 'cqu',
		'AUR62040916' => 'cqu',
		'AUR62041199' => 'cqu',
		'AUR62041334' => 'cqu',
		'AUR62041608' => 'cqu',
		'AUR62041609' => 'cqu',
		'AUR62041833' => 'cqu',
		'AUR62041834' => 'cqu',
		'AUR62042054' => 'cqu',
		'AUR62042134' => 'cqu',
		'AUR62042236' => 'cqu',
		'AUR62042281' => 'cqu',
		'AUR62042593' => 'cqu',
		'AUR62042653' => 'cqu',
		'AUR62043025' => 'cqu',
		'AUR62043026' => 'cqu',
		'AUR62043063' => 'cqu',
		'AUR62043091' => 'cqu',
		'AUR62043320' => 'cqu',
		'BolC5t32558H' => 'bol',
		'CAN.G1036.12' => 'can',
		'CAN.G1432.23' => 'can',
		'CAN.G159.19' => 'can',
		'CAN.G4114.1' => 'can',
		'CAN.G492.85' => 'can',
		'CAN.G500.95' => 'can',
		'CAN.G93.31' => 'can',
		'CiPaw.04G054900' => 'cil',
		'CiPaw.05G045400' => 'cil',
		'CiPaw.15G094100' => 'cil',
		'ClCG00G000700' => 'cla',
		'ClCG00G000780' => 'cla',
		'ClCG01G012280' => 'cla',
		'ClCG02G006140' => 'cla',
		'ClCG02G009810' => 'cla',
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		'Sopen01g009130' => 'spe',
		'Sopen01g009820' => 'spe',
		'Sopen01g011240' => 'spe',
		'Sopen01g012740' => 'spe',
		'Sopen01g013840' => 'spe',
		'Sopen01g013850' => 'spe',
		'Sopen01g016140' => 'spe',
		'Sopen01g016150' => 'spe',
		'Sopen01g016830' => 'spe',
		'Sopen01g017260' => 'spe',
		'Sopen01g019000' => 'spe',
		'Sopen01g019690' => 'spe',
		'Sopen01g022160' => 'spe',
		'Sopen01g024000' => 'spe',
		'Sopen01g024670' => 'spe',
		'Sopen01g024770' => 'spe',
		'Sopen01g024900' => 'spe',
		'Sopen01g025130' => 'spe',
		'Sopen01g026370' => 'spe',
		'Sopen01g041640' => 'spe',
		'Sopen01g046930' => 'spe',
		'Sopen02g001360' => 'spe',
		'Sopen02g002010' => 'spe',
		'Sopen02g003600' => 'spe',
		'Sopen02g003730' => 'spe',
		'Sopen02g005430' => 'spe',
		'Sopen02g005510' => 'spe',
		'Sopen02g006840' => 'spe',
		'Sopen02g007390' => 'spe',
		'Sopen02g007420' => 'spe',
		'Sopen02g007540' => 'spe',
		'Sopen02g007920' => 'spe',
		'Sopen02g008960' => 'spe',
		'Sopen02g009450' => 'spe',
		'Sopen02g009460' => 'spe',
		'Sopen02g011320' => 'spe',
		'Sopen02g012680' => 'spe',
		'Sopen02g018090' => 'spe',
		'Sopen02g022140' => 'spe',
		'Sopen03g010330' => 'spe',
		'Sopen03g013130' => 'spe',
		'Sopen03g013180' => 'spe',
		'Sopen03g013230' => 'spe',
		'Sopen03g014110' => 'spe',
		'Sopen03g015260' => 'spe',
		'Sopen03g015790' => 'spe',
		'Sopen03g018360' => 'spe',
		'Sopen03g024470' => 'spe',
		'Sopen03g026800' => 'spe',
		'Sopen04g003180' => 'spe',
		'Sopen04g008260' => 'spe',
		'Sopen04g010320' => 'spe',
		'Sopen04g011020' => 'spe',
		'Sopen04g011200' => 'spe',
		'Sopen04g011280' => 'spe',
		'Sopen04g021910' => 'spe',
		'Sopen04g023870' => 'spe',
		'Sopen05g009880' => 'spe',
		'Sopen05g011580' => 'spe',
		'Sopen05g012230' => 'spe',
		'Sopen05g012500' => 'spe',
		'Sopen05g012560' => 'spe',
		'Sopen05g012570' => 'spe',
		'Sopen05g012760' => 'spe',
		'Sopen05g013710' => 'spe',
		'Sopen05g015050' => 'spe',
		'Sopen05g026090' => 'spe',
		'Sopen05g028020' => 'spe',
		'Sopen05g028610' => 'spe',
		'Sopen05g029300' => 'spe',
		'Sopen06g005520' => 'spe',
		'Sopen06g006750' => 'spe',
		'Sopen06g008160' => 'spe',
		'Sopen06g009120' => 'spe',
		'Sopen06g013550' => 'spe',
		'Sopen06g015340' => 'spe',
		'Sopen06g018330' => 'spe',
		'Sopen06g021630' => 'spe',
		'Sopen06g021650' => 'spe',
		'Sopen07g006730' => 'spe',
		'Sopen07g008690' => 'spe',
		'Sopen07g008700' => 'spe',
		'Sopen07g008720' => 'spe',
		'Sopen07g008870' => 'spe',
		'Sopen07g009400' => 'spe',
		'Sopen07g009410' => 'spe',
		'Sopen07g009470' => 'spe',
		'Sopen07g009540' => 'spe',
		'Sopen07g011060' => 'spe',
		'Sopen07g011110' => 'spe',
		'Sopen07g011820' => 'spe',
		'Sopen07g013260' => 'spe',
		'Sopen07g014740' => 'spe',
		'Sopen07g015160' => 'spe',
		'Sopen07g015230' => 'spe',
		'Sopen07g016240' => 'spe',
		'Sopen07g017200' => 'spe',
		'Sopen07g017810' => 'spe',
		'Sopen07g019030' => 'spe',
		'Sopen07g020430' => 'spe',
		'Sopen07g021010' => 'spe',
		'Sopen07g021340' => 'spe',
		'Sopen07g022950' => 'spe',
		'Sopen07g027860' => 'spe',
		'Sopen08g007820' => 'spe',
		'Sopen08g009330' => 'spe',
		'Sopen08g012310' => 'spe',
		'Sopen08g012560' => 'spe',
		'Sopen08g014040' => 'spe',
		'Sopen08g014650' => 'spe',
		'Sopen08g017020' => 'spe',
		'Sopen08g018300' => 'spe',
		'Sopen08g020530' => 'spe',
		'Sopen09g008590' => 'spe',
		'Sopen09g008780' => 'spe',
		'Sopen09g011540' => 'spe',
		'Sopen09g011920' => 'spe',
		'Sopen09g014170' => 'spe',
		'Sopen09g016520' => 'spe',
		'Sopen09g021030' => 'spe',
		'Sopen09g023110' => 'spe',
		'Sopen09g024750' => 'spe',
		'Sopen09g025230' => 'spe',
		'Sopen09g025600' => 'spe',
		'Sopen09g034660' => 'spe',
		'Sopen10g006700' => 'spe',
		'Sopen10g009130' => 'spe',
		'Sopen10g009140' => 'spe',
		'Sopen10g009560' => 'spe',
		'Sopen10g010340' => 'spe',
		'Sopen10g011040' => 'spe',
		'Sopen10g013650' => 'spe',
		'Sopen10g014130' => 'spe',
		'Sopen10g014140' => 'spe',
		'Sopen10g014760' => 'spe',
		'Sopen10g015080' => 'spe',
		'Sopen10g015830' => 'spe',
		'Sopen10g018240' => 'spe',
		'Sopen10g018300' => 'spe',
		'Sopen10g018350' => 'spe',
		'Sopen10g018460' => 'spe',
		'Sopen10g018670' => 'spe',
		'Sopen10g019040' => 'spe',
		'Sopen10g019330' => 'spe',
		'Sopen10g019340' => 'spe',
		'Sopen10g019360' => 'spe',
		'Sopen10g019370' => 'spe',
		'Sopen10g020620' => 'spe',
		'Sopen10g021550' => 'spe',
		'Sopen10g022160' => 'spe',
		'Sopen10g023540' => 'spe',
		'Sopen10g023570' => 'spe',
		'Sopen10g023580' => 'spe',
		'Sopen10g023600' => 'spe',
		'Sopen10g023620' => 'spe',
		'Sopen10g023650' => 'spe',
		'Sopen10g024800' => 'spe',
		'Sopen10g026170' => 'spe',
		'Sopen11g007790' => 'spe',
		'Sopen11g010170' => 'spe',
		'Sopen11g010580' => 'spe',
		'Sopen11g013420' => 'spe',
		'Sopen11g016330' => 'spe',
		'Sopen11g017010' => 'spe',
		'Sopen11g018110' => 'spe',
		'Sopen11g018960' => 'spe',
		'Sopen11g019000' => 'spe',
		'Sopen11g019970' => 'spe',
		'Sopen11g020340' => 'spe',
		'Sopen11g020970' => 'spe',
		'Sopen12g008510' => 'spe',
		'Sopen12g008910' => 'spe',
		'Sopen12g009010' => 'spe',
		'Sopen12g009120' => 'spe',
		'Sopen12g009340' => 'spe',
		'Sopen12g009580' => 'spe',
		'Sopen12g010190' => 'spe',
		'Sopen12g010320' => 'spe',
		'Sopen12g010370' => 'spe',
		'Sopen12g012140' => 'spe',
		'Sopen12g012700' => 'spe',
		'Sopen12g013490' => 'spe',
		'Sopen12g014290' => 'spe',
		'Sopen12g015060' => 'spe',
		'Sopen12g015610' => 'spe',
		'Sopen12g018380' => 'spe',
		'Sopen12g019150' => 'spe',
		'Sopen12g020560' => 'spe',
		'Sopen12g023320' => 'spe',
		'Sp3g24190' => 'spa',
		'Sp4g07270' => 'spa',
		'Sp4g07530' => 'spa',
		'Sp4g07670' => 'spa',
		'Sp6g09360' => 'spa',
		'Sp7g04180' => 'spa',
		'Sp7g04980' => 'spa',
		'Sp7g08200' => 'spa',
		'Sp7g09660' => 'spa',
		'SpUn0081_0010' => 'spa',
		'THA.LOC104803417' => 'tha',
		'THA.LOC104817059' => 'tha',
		'Thecc.01G188700' => 'tca',
		'Thecc.05G106700' => 'tca',
		'Thecc.06G068800' => 'tca',
		'Thecc.07G189100' => 'tca',
		'Thecc.09G172800' => 'tca',
		'Thhalv10023044m.g' => 'esa',
		'Thhalv10023881m.g' => 'esa',
		'Thhalv10024067m.g' => 'esa'
	),
	'gf_id' => 'HOM05D000691',
	'gf_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'gf_types_configuration' => array(
		'HOMFAM' => array(
			'order' => '1',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		),
		'ORTHOFAM' => array(
			'order' => '2',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		)
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'allow_async_use' => true,
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D000691'
	),
	'data_identifier' => 'HOM05D000691',
	'data_type' => 'gf_id'
)
$sidebar_info = array(
	'gf_id' => 'HOM05D000691',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '827',
	'num_species' => '39'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$gf_genes = array(
	'Ah.01g012340' => 'amhyb',
	'Ah.01g013530' => 'amhyb',
	'Ah.03g143080' => 'amhyb',
	'Ah.06g186750' => 'amhyb',
	'Ah.06g186800' => 'amhyb',
	'Ah.07g200050' => 'amhyb',
	'Ah.08g209110' => 'amhyb',
	'Ah.09g229600' => 'amhyb',
	'Ah.09g229610' => 'amhyb',
	'Ah.10g026490' => 'amhyb',
	'Ah.12g065350' => 'amhyb',
	'Ah.13g069310' => 'amhyb',
	'Ah.14g080130' => 'amhyb',
	'Ah.14g081130' => 'amhyb',
	'Ah.14g081140' => 'amhyb',
	'Ah.16g109160' => 'amhyb',
	'Ah.16g109170' => 'amhyb',
	'Ah.16g109370' => 'amhyb',
	'AL3G47720' => 'aly',
	'ATR0012G060' => 'atr',
	'ATR0026G029' => 'atr',
	'ATR0193G043' => 'atr',
	'ATR0561G076' => 'atr',
	'ATR0561G181' => 'atr',
	'ATR0568G014' => 'atr',
	'ATR0568G114' => 'atr',
	'ATR0620G039' => 'atr',
	'ATR0629G125' => 'atr',
	'ATR0661G583' => 'atr',
	'ATR0686G019' => 'atr',
	'ATR0693G232' => 'atr',
	'ATR0697G104' => 'atr',
	'ATR0789G146' => 'atr',
	'ATR0794G066' => 'atr',
	'ATR1127G127' => 'atr',
	'ATR1131G040' => 'atr',
	'ATR1134G004' => 'atr',
	'ATR1134G095' => 'atr',
	'ATR1152G110' => 'atr',
	'ATR1153G065' => 'atr',
	'Atru.chr3.2296' => 'acertr',
	'AUR62000692' => 'cqu',
	'AUR62001473' => 'cqu',
	'AUR62001812' => 'cqu',
	'AUR62002706' => 'cqu',
	'AUR62003904' => 'cqu',
	'AUR62003905' => 'cqu',
	'AUR62004840' => 'cqu',
	'AUR62005160' => 'cqu',
	'AUR62005604' => 'cqu',
	'AUR62005891' => 'cqu',
	'AUR62007290' => 'cqu',
	'AUR62007502' => 'cqu',
	'AUR62007923' => 'cqu',
	'AUR62009972' => 'cqu',
	'AUR62010488' => 'cqu',
	'AUR62010643' => 'cqu',
	'AUR62012637' => 'cqu',
	'AUR62013492' => 'cqu',
	'AUR62014239' => 'cqu',
	'AUR62014878' => 'cqu',
	'AUR62015857' => 'cqu',
	'AUR62016224' => 'cqu',
	'AUR62017430' => 'cqu',
	'AUR62017467' => 'cqu',
	'AUR62018234' => 'cqu',
	'AUR62019060' => 'cqu',
	'AUR62019607' => 'cqu',
	'AUR62019661' => 'cqu',
	'AUR62022775' => 'cqu',
	'AUR62023603' => 'cqu',
	'AUR62024563' => 'cqu',
	'AUR62026199' => 'cqu',
	'AUR62026905' => 'cqu',
	'AUR62028639' => 'cqu',
	'AUR62029168' => 'cqu',
	'AUR62029551' => 'cqu',
	'AUR62029860' => 'cqu',
	'AUR62030164' => 'cqu',
	'AUR62031208' => 'cqu',
	'AUR62031287' => 'cqu',
	'AUR62031817' => 'cqu',
	'AUR62032126' => 'cqu',
	'AUR62032358' => 'cqu',
	'AUR62032884' => 'cqu',
	'AUR62032892' => 'cqu',
	'AUR62033082' => 'cqu',
	'AUR62033100' => 'cqu',
	'AUR62033255' => 'cqu',
	'AUR62033698' => 'cqu',
	'AUR62033757' => 'cqu',
	'AUR62034760' => 'cqu',
	'AUR62034860' => 'cqu',
	'AUR62035179' => 'cqu',
	'AUR62035881' => 'cqu',
	'AUR62036824' => 'cqu',
	'AUR62036876' => 'cqu',
	'AUR62037319' => 'cqu',
	'AUR62037362' => 'cqu',
	'AUR62037541' => 'cqu',
	'AUR62037853' => 'cqu',
	'AUR62038299' => 'cqu',
	'AUR62038563' => 'cqu',
	'AUR62038564' => 'cqu',
	'AUR62038594' => 'cqu',
	'AUR62038792' => 'cqu',
	'AUR62038947' => 'cqu',
	'AUR62039030' => 'cqu',
	'AUR62039231' => 'cqu',
	'AUR62039452' => 'cqu',
	'AUR62040334' => 'cqu',
	'AUR62040869' => 'cqu',
	'AUR62040870' => 'cqu',
	'AUR62040916' => 'cqu',
	'AUR62041199' => 'cqu',
	'AUR62041334' => 'cqu',
	'AUR62041608' => 'cqu',
	'AUR62041609' => 'cqu',
	'AUR62041833' => 'cqu',
	'AUR62041834' => 'cqu',
	'AUR62042054' => 'cqu',
	'AUR62042134' => 'cqu',
	'AUR62042236' => 'cqu',
	'AUR62042281' => 'cqu',
	'AUR62042593' => 'cqu',
	'AUR62042653' => 'cqu',
	'AUR62043025' => 'cqu',
	'AUR62043026' => 'cqu',
	'AUR62043063' => 'cqu',
	'AUR62043091' => 'cqu',
	'AUR62043320' => 'cqu',
	'BolC5t32558H' => 'bol',
	'CAN.G1036.12' => 'can',
	'CAN.G1432.23' => 'can',
	'CAN.G159.19' => 'can',
	'CAN.G4114.1' => 'can',
	'CAN.G492.85' => 'can',
	'CAN.G500.95' => 'can',
	'CAN.G93.31' => 'can',
	'CiPaw.04G054900' => 'cil',
	'CiPaw.05G045400' => 'cil',
	'CiPaw.15G094100' => 'cil',
	'ClCG00G000700' => 'cla',
	'ClCG00G000780' => 'cla',
	'ClCG01G012280' => 'cla',
	'ClCG02G006140' => 'cla',
	'ClCG02G009810' => 'cla',
	'ClCG03G010170' => 'cla',
	'ClCG03G010260' => 'cla',
	'ClCG04G000770' => 'cla',
	'ClCG05G013980' => 'cla',
	'ClCG06G009110' => 'cla',
	'ClCG06G009120' => 'cla',
	'ClCG08G002190' => 'cla',
	'ClCG09G013830' => 'cla',
	'ClCG10G006760' => 'cla',
	'ClCG11G007310' => 'cla',
	'COL.COLO4_16141' => 'col',
	'Cpa.g.sc202.2' => 'cpa',
	'Cpa.g.sc76.18' => 'cpa',
	'CsaV3_1G031080' => 'csa',
	'CsaV3_4G011870' => 'csa',
	'CsaV3_4G014860' => 'csa',
	'CsaV3_4G021860' => 'csa',
	'CsaV3_6G009880' => 'csa',
	'CsaV3_7G021240' => 'csa',
	'CsaV3_UNG240600' => 'csa',
	'CSS0003516' => 'camsi',
	'CSS0013023' => 'camsi',
	'CSS0017680' => 'camsi',
	'CSS0018551' => 'camsi',
	'CSS0026792' => 'camsi',
	'CSS0028271' => 'camsi',
	'CSS0033603' => 'camsi',
	'CSS0040789' => 'camsi',
	'CSS0045068' => 'camsi',
	'CSS0045803' => 'camsi',
	'Dinv10528' => 'din',
	'Duzib116G0875' => 'dzi',
	'Duzib128G0055' => 'dzi',
	'EL10Ac1g02377' => 'bvu',
	'EL10Ac1g02378' => 'bvu',
	'EL10Ac2g03486' => 'bvu',
	'EL10Ac2g03487' => 'bvu',
	'EL10Ac3g05722' => 'bvu',
	'EL10Ac3g06186' => 'bvu',
	'EL10Ac5g11258' => 'bvu',
	'EL10Ac6g13831' => 'bvu',
	'EL10Ac6g14162' => 'bvu',
	'EL10Ac6g14316' => 'bvu',
	'EL10Ac6g14317' => 'bvu',
	'EL10Ac6g14588' => 'bvu',
	'EL10Ac7g16302' => 'bvu',
	'EL10Ac7g16543' => 'bvu',
	'EL10Ac8g18762' => 'bvu',
	'EL10Ac9g20847' => 'bvu',
	'EL10As7g23731' => 'bvu',
	'EL10As7g23732' => 'bvu',
	'FvH4_1g23713' => 'fve',
	'FvH4_2g00261' => 'fve',
	'FvH4_2g00262' => 'fve',
	'FvH4_2g15681' => 'fve',
	'FvH4_2g17851' => 'fve',
	'FvH4_3g10531' => 'fve',
	'FvH4_3g33536' => 'fve',
	'FvH4_4g03471' => 'fve',
	'FvH4_4g19351' => 'fve',
	'FvH4_4g34281' => 'fve',
	'FvH4_5g03811' => 'fve',
	'FvH4_5g03812' => 'fve',
	'FvH4_5g11822' => 'fve',
	'FvH4_5g31701' => 'fve',
	'FvH4_6g12161' => 'fve',
	'FvH4_6g15222' => 'fve',
	'FvH4_6g15223' => 'fve',
	'FvH4_6g19301' => 'fve',
	'FvH4_6g33011' => 'fve',
	'FvH4_6g50161' => 'fve',
	'FvH4_7g04123' => 'fve',
	'FvH4_c7g00010' => 'fve',
	'Gorai.012G165300' => 'gra',
	'HanXRQChr00c0452g0574871' => 'han',
	'HanXRQChr01g0029471' => 'han',
	'HanXRQChr05g0133501' => 'han',
	'HanXRQChr10g0280141' => 'han',
	'HanXRQChr10g0280631' => 'han',
	'HanXRQChr13g0409991' => 'han',
	'HanXRQChr15g0468361' => 'han',
	'Hma1.2p1_0021F.1_g014270' => 'hma',
	'Hma1.2p1_0026F.1_g016730' => 'hma',
	'Hma1.2p1_0177F.1_g077930' => 'hma',
	'Hma1.2p1_0370F.1_g137540' => 'hma',
	'Hma1.2p1_0637F.1_g193600' => 'hma',
	'Hma1.2p1_1045F.1_g251360' => 'hma',
	'Hma1.2p1_1168F.1_g263120' => 'hma',
	'Hma1.2p1_1640F.1_g295040' => 'hma',
	'Hma1.2p1_2467F.1_g322660' => 'hma',
	'Hund01785' => 'sun',
	'Hund04739' => 'sun',
	'Hund07717' => 'sun',
	'Hund08060' => 'sun',
	'Hund08734' => 'sun',
	'Hund10876' => 'sun',
	'Hund14991' => 'sun',
	'Hund15051' => 'sun',
	'Hund15082' => 'sun',
	'Hund17998' => 'sun',
	'Hund18526' => 'sun',
	'Hund19828' => 'sun',
	'Hund23384' => 'sun',
	'Hund26399' => 'sun',
	'Hund28766' => 'sun',
	'Hund28768' => 'sun',
	'Lj1A487G33' => 'lonja',
	'Lj1A487G34' => 'lonja',
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	'Sopen10g023600' => 'spe',
	'Sopen10g023620' => 'spe',
	'Sopen10g023650' => 'spe',
	'Sopen10g024800' => 'spe',
	'Sopen10g026170' => 'spe',
	'Sopen11g007790' => 'spe',
	'Sopen11g010170' => 'spe',
	'Sopen11g010580' => 'spe',
	'Sopen11g013420' => 'spe',
	'Sopen11g016330' => 'spe',
	'Sopen11g017010' => 'spe',
	'Sopen11g018110' => 'spe',
	'Sopen11g018960' => 'spe',
	'Sopen11g019000' => 'spe',
	'Sopen11g019970' => 'spe',
	'Sopen11g020340' => 'spe',
	'Sopen11g020970' => 'spe',
	'Sopen12g008510' => 'spe',
	'Sopen12g008910' => 'spe',
	'Sopen12g009010' => 'spe',
	'Sopen12g009120' => 'spe',
	'Sopen12g009340' => 'spe',
	'Sopen12g009580' => 'spe',
	'Sopen12g010190' => 'spe',
	'Sopen12g010320' => 'spe',
	'Sopen12g010370' => 'spe',
	'Sopen12g012140' => 'spe',
	'Sopen12g012700' => 'spe',
	'Sopen12g013490' => 'spe',
	'Sopen12g014290' => 'spe',
	'Sopen12g015060' => 'spe',
	'Sopen12g015610' => 'spe',
	'Sopen12g018380' => 'spe',
	'Sopen12g019150' => 'spe',
	'Sopen12g020560' => 'spe',
	'Sopen12g023320' => 'spe',
	'Sp3g24190' => 'spa',
	'Sp4g07270' => 'spa',
	'Sp4g07530' => 'spa',
	'Sp4g07670' => 'spa',
	'Sp6g09360' => 'spa',
	'Sp7g04180' => 'spa',
	'Sp7g04980' => 'spa',
	'Sp7g08200' => 'spa',
	'Sp7g09660' => 'spa',
	'SpUn0081_0010' => 'spa',
	'THA.LOC104803417' => 'tha',
	'THA.LOC104817059' => 'tha',
	'Thecc.01G188700' => 'tca',
	'Thecc.05G106700' => 'tca',
	'Thecc.06G068800' => 'tca',
	'Thecc.07G189100' => 'tca',
	'Thecc.09G172800' => 'tca',
	'Thhalv10023044m.g' => 'esa',
	'Thhalv10023881m.g' => 'esa',
	'Thhalv10024067m.g' => 'esa'
)
$gf_id = 'HOM05D000691'
$gf_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$gf_types_configuration = array(
	'HOMFAM' => array(
		'order' => '1',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	),
	'ORTHOFAM' => array(
		'order' => '2',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	)
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$allow_async_use = true
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D000691'
)
$data_identifier = 'HOM05D000691'
$data_type = 'gf_id'
$species_gene_counts = array(
	'amhyb' => (int) 18,
	'aly' => (int) 1,
	'atr' => (int) 21,
	'acertr' => (int) 1,
	'cqu' => (int) 90,
	'bol' => (int) 1,
	'can' => (int) 7,
	'cil' => (int) 3,
	'cla' => (int) 15,
	'col' => (int) 1,
	'cpa' => (int) 2,
	'csa' => (int) 7,
	'camsi' => (int) 10,
	'din' => (int) 1,
	'dzi' => (int) 2,
	'bvu' => (int) 18,
	'fve' => (int) 22,
	'gra' => (int) 1,
	'han' => (int) 7,
	'hma' => (int) 9,
	'sun' => (int) 16,
	'lonja' => (int) 46,
	'mes' => (int) 8,
	'mbi' => (int) 2,
	'cme' => (int) 6,
	'oeu' => (int) 110,
	'stu' => (int) 45,
	'ptr' => (int) 1,
	'rch' => (int) 1,
	'sci' => (int) 1,
	'sgi' => (int) 31,
	'sas' => (int) 1,
	'shi' => (int) 89,
	'sly' => (int) 2,
	'spe' => (int) 211,
	'spa' => (int) 10,
	'tha' => (int) 2,
	'tca' => (int) 5,
	'esa' => (int) 3
)
$gf_gene_species = 'esa'
$gf_gene_id = 'Thhalv10024067m.g'
$species_info = array(
	'species' => 'amhyb',
	'common_name' => 'Amaranthus hybridus',
	'tax_id' => '3565',
	'version' => 'v1.0'
)
$local_species = 'amhyb'
$disabled = ''
$selected = ''
$num_hits = (int) 0
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Analysis/custom_tree_creation.ctp, line 27
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933

Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]
Code Context
        $disabled    = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";

        $selected    = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";

        $num_hits    = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D000691',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '827',
		'num_species' => '39'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'gf_genes' => array(
		'Ah.01g012340' => 'amhyb',
		'Ah.01g013530' => 'amhyb',
		'Ah.03g143080' => 'amhyb',
		'Ah.06g186750' => 'amhyb',
		'Ah.06g186800' => 'amhyb',
		'Ah.07g200050' => 'amhyb',
		'Ah.08g209110' => 'amhyb',
		'Ah.09g229600' => 'amhyb',
		'Ah.09g229610' => 'amhyb',
		'Ah.10g026490' => 'amhyb',
		'Ah.12g065350' => 'amhyb',
		'Ah.13g069310' => 'amhyb',
		'Ah.14g080130' => 'amhyb',
		'Ah.14g081130' => 'amhyb',
		'Ah.14g081140' => 'amhyb',
		'Ah.16g109160' => 'amhyb',
		'Ah.16g109170' => 'amhyb',
		'Ah.16g109370' => 'amhyb',
		'AL3G47720' => 'aly',
		'ATR0012G060' => 'atr',
		'ATR0026G029' => 'atr',
		'ATR0193G043' => 'atr',
		'ATR0561G076' => 'atr',
		'ATR0561G181' => 'atr',
		'ATR0568G014' => 'atr',
		'ATR0568G114' => 'atr',
		'ATR0620G039' => 'atr',
		'ATR0629G125' => 'atr',
		'ATR0661G583' => 'atr',
		'ATR0686G019' => 'atr',
		'ATR0693G232' => 'atr',
		'ATR0697G104' => 'atr',
		'ATR0789G146' => 'atr',
		'ATR0794G066' => 'atr',
		'ATR1127G127' => 'atr',
		'ATR1131G040' => 'atr',
		'ATR1134G004' => 'atr',
		'ATR1134G095' => 'atr',
		'ATR1152G110' => 'atr',
		'ATR1153G065' => 'atr',
		'Atru.chr3.2296' => 'acertr',
		'AUR62000692' => 'cqu',
		'AUR62001473' => 'cqu',
		'AUR62001812' => 'cqu',
		'AUR62002706' => 'cqu',
		'AUR62003904' => 'cqu',
		'AUR62003905' => 'cqu',
		'AUR62004840' => 'cqu',
		'AUR62005160' => 'cqu',
		'AUR62005604' => 'cqu',
		'AUR62005891' => 'cqu',
		'AUR62007290' => 'cqu',
		'AUR62007502' => 'cqu',
		'AUR62007923' => 'cqu',
		'AUR62009972' => 'cqu',
		'AUR62010488' => 'cqu',
		'AUR62010643' => 'cqu',
		'AUR62012637' => 'cqu',
		'AUR62013492' => 'cqu',
		'AUR62014239' => 'cqu',
		'AUR62014878' => 'cqu',
		'AUR62015857' => 'cqu',
		'AUR62016224' => 'cqu',
		'AUR62017430' => 'cqu',
		'AUR62017467' => 'cqu',
		'AUR62018234' => 'cqu',
		'AUR62019060' => 'cqu',
		'AUR62019607' => 'cqu',
		'AUR62019661' => 'cqu',
		'AUR62022775' => 'cqu',
		'AUR62023603' => 'cqu',
		'AUR62024563' => 'cqu',
		'AUR62026199' => 'cqu',
		'AUR62026905' => 'cqu',
		'AUR62028639' => 'cqu',
		'AUR62029168' => 'cqu',
		'AUR62029551' => 'cqu',
		'AUR62029860' => 'cqu',
		'AUR62030164' => 'cqu',
		'AUR62031208' => 'cqu',
		'AUR62031287' => 'cqu',
		'AUR62031817' => 'cqu',
		'AUR62032126' => 'cqu',
		'AUR62032358' => 'cqu',
		'AUR62032884' => 'cqu',
		'AUR62032892' => 'cqu',
		'AUR62033082' => 'cqu',
		'AUR62033100' => 'cqu',
		'AUR62033255' => 'cqu',
		'AUR62033698' => 'cqu',
		'AUR62033757' => 'cqu',
		'AUR62034760' => 'cqu',
		'AUR62034860' => 'cqu',
		'AUR62035179' => 'cqu',
		'AUR62035881' => 'cqu',
		'AUR62036824' => 'cqu',
		'AUR62036876' => 'cqu',
		'AUR62037319' => 'cqu',
		'AUR62037362' => 'cqu',
		'AUR62037541' => 'cqu',
		'AUR62037853' => 'cqu',
		'AUR62038299' => 'cqu',
		'AUR62038563' => 'cqu',
		'AUR62038564' => 'cqu',
		'AUR62038594' => 'cqu',
		'AUR62038792' => 'cqu',
		'AUR62038947' => 'cqu',
		'AUR62039030' => 'cqu',
		'AUR62039231' => 'cqu',
		'AUR62039452' => 'cqu',
		'AUR62040334' => 'cqu',
		'AUR62040869' => 'cqu',
		'AUR62040870' => 'cqu',
		'AUR62040916' => 'cqu',
		'AUR62041199' => 'cqu',
		'AUR62041334' => 'cqu',
		'AUR62041608' => 'cqu',
		'AUR62041609' => 'cqu',
		'AUR62041833' => 'cqu',
		'AUR62041834' => 'cqu',
		'AUR62042054' => 'cqu',
		'AUR62042134' => 'cqu',
		'AUR62042236' => 'cqu',
		'AUR62042281' => 'cqu',
		'AUR62042593' => 'cqu',
		'AUR62042653' => 'cqu',
		'AUR62043025' => 'cqu',
		'AUR62043026' => 'cqu',
		'AUR62043063' => 'cqu',
		'AUR62043091' => 'cqu',
		'AUR62043320' => 'cqu',
		'BolC5t32558H' => 'bol',
		'CAN.G1036.12' => 'can',
		'CAN.G1432.23' => 'can',
		'CAN.G159.19' => 'can',
		'CAN.G4114.1' => 'can',
		'CAN.G492.85' => 'can',
		'CAN.G500.95' => 'can',
		'CAN.G93.31' => 'can',
		'CiPaw.04G054900' => 'cil',
		'CiPaw.05G045400' => 'cil',
		'CiPaw.15G094100' => 'cil',
		'ClCG00G000700' => 'cla',
		'ClCG00G000780' => 'cla',
		'ClCG01G012280' => 'cla',
		'ClCG02G006140' => 'cla',
		'ClCG02G009810' => 'cla',
		'ClCG03G010170' => 'cla',
		'ClCG03G010260' => 'cla',
		'ClCG04G000770' => 'cla',
		'ClCG05G013980' => 'cla',
		'ClCG06G009110' => 'cla',
		'ClCG06G009120' => 'cla',
		'ClCG08G002190' => 'cla',
		'ClCG09G013830' => 'cla',
		'ClCG10G006760' => 'cla',
		'ClCG11G007310' => 'cla',
		'COL.COLO4_16141' => 'col',
		'Cpa.g.sc202.2' => 'cpa',
		'Cpa.g.sc76.18' => 'cpa',
		'CsaV3_1G031080' => 'csa',
		'CsaV3_4G011870' => 'csa',
		'CsaV3_4G014860' => 'csa',
		'CsaV3_4G021860' => 'csa',
		'CsaV3_6G009880' => 'csa',
		'CsaV3_7G021240' => 'csa',
		'CsaV3_UNG240600' => 'csa',
		'CSS0003516' => 'camsi',
		'CSS0013023' => 'camsi',
		'CSS0017680' => 'camsi',
		'CSS0018551' => 'camsi',
		'CSS0026792' => 'camsi',
		'CSS0028271' => 'camsi',
		'CSS0033603' => 'camsi',
		'CSS0040789' => 'camsi',
		'CSS0045068' => 'camsi',
		'CSS0045803' => 'camsi',
		'Dinv10528' => 'din',
		'Duzib116G0875' => 'dzi',
		'Duzib128G0055' => 'dzi',
		'EL10Ac1g02377' => 'bvu',
		'EL10Ac1g02378' => 'bvu',
		'EL10Ac2g03486' => 'bvu',
		'EL10Ac2g03487' => 'bvu',
		'EL10Ac3g05722' => 'bvu',
		'EL10Ac3g06186' => 'bvu',
		'EL10Ac5g11258' => 'bvu',
		'EL10Ac6g13831' => 'bvu',
		'EL10Ac6g14162' => 'bvu',
		'EL10Ac6g14316' => 'bvu',
		'EL10Ac6g14317' => 'bvu',
		'EL10Ac6g14588' => 'bvu',
		'EL10Ac7g16302' => 'bvu',
		'EL10Ac7g16543' => 'bvu',
		'EL10Ac8g18762' => 'bvu',
		'EL10Ac9g20847' => 'bvu',
		'EL10As7g23731' => 'bvu',
		'EL10As7g23732' => 'bvu',
		'FvH4_1g23713' => 'fve',
		'FvH4_2g00261' => 'fve',
		'FvH4_2g00262' => 'fve',
		'FvH4_2g15681' => 'fve',
		'FvH4_2g17851' => 'fve',
		'FvH4_3g10531' => 'fve',
		'FvH4_3g33536' => 'fve',
		'FvH4_4g03471' => 'fve',
		'FvH4_4g19351' => 'fve',
		'FvH4_4g34281' => 'fve',
		'FvH4_5g03811' => 'fve',
		'FvH4_5g03812' => 'fve',
		'FvH4_5g11822' => 'fve',
		'FvH4_5g31701' => 'fve',
		'FvH4_6g12161' => 'fve',
		'FvH4_6g15222' => 'fve',
		'FvH4_6g15223' => 'fve',
		'FvH4_6g19301' => 'fve',
		'FvH4_6g33011' => 'fve',
		'FvH4_6g50161' => 'fve',
		'FvH4_7g04123' => 'fve',
		'FvH4_c7g00010' => 'fve',
		'Gorai.012G165300' => 'gra',
		'HanXRQChr00c0452g0574871' => 'han',
		'HanXRQChr01g0029471' => 'han',
		'HanXRQChr05g0133501' => 'han',
		'HanXRQChr10g0280141' => 'han',
		'HanXRQChr10g0280631' => 'han',
		'HanXRQChr13g0409991' => 'han',
		'HanXRQChr15g0468361' => 'han',
		'Hma1.2p1_0021F.1_g014270' => 'hma',
		'Hma1.2p1_0026F.1_g016730' => 'hma',
		'Hma1.2p1_0177F.1_g077930' => 'hma',
		'Hma1.2p1_0370F.1_g137540' => 'hma',
		'Hma1.2p1_0637F.1_g193600' => 'hma',
		'Hma1.2p1_1045F.1_g251360' => 'hma',
		'Hma1.2p1_1168F.1_g263120' => 'hma',
		'Hma1.2p1_1640F.1_g295040' => 'hma',
		'Hma1.2p1_2467F.1_g322660' => 'hma',
		'Hund01785' => 'sun',
		'Hund04739' => 'sun',
		'Hund07717' => 'sun',
		'Hund08060' => 'sun',
		'Hund08734' => 'sun',
		'Hund10876' => 'sun',
		'Hund14991' => 'sun',
		'Hund15051' => 'sun',
		'Hund15082' => 'sun',
		'Hund17998' => 'sun',
		'Hund18526' => 'sun',
		'Hund19828' => 'sun',
		'Hund23384' => 'sun',
		'Hund26399' => 'sun',
		'Hund28766' => 'sun',
		'Hund28768' => 'sun',
		'Lj1A487G33' => 'lonja',
		'Lj1A487G34' => 'lonja',
		'Lj1A489G15' => 'lonja',
		'Lj1C1113T3' => 'lonja',
		'Lj1C3T4' => 'lonja',
		'Lj1C763G4' => 'lonja',
		'Lj1P195T27' => 'lonja',
		'Lj1P573T13' => 'lonja',
		'Lj1P895T45' => 'lonja',
		'Lj1P995G28' => 'lonja',
		'Lj2A1125G46' => 'lonja',
		'Lj2C116T7' => 'lonja',
		'Lj2P295T30' => 'lonja',
		'Lj2P476T23' => 'lonja',
		'Lj2P603T27' => 'lonja',
		'Lj2P609T17' => 'lonja',
		'Lj2P727T24' => 'lonja',
		'Lj3C273T2' => 'lonja',
		'Lj3C644G3' => 'lonja',
		'Lj3C644G4' => 'lonja',
		'Lj3P463T4' => 'lonja',
		'Lj3P545T31' => 'lonja',
		'Lj3P820T55' => 'lonja',
		'Lj4C260T12' => 'lonja',
		'Lj4C714G8' => 'lonja',
		'Lj4P131T14' => 'lonja',
		'Lj4P131T15' => 'lonja',
		'Lj5C102G24' => 'lonja',
		'Lj5P491T3' => 'lonja',
		'Lj5P564T12' => 'lonja',
		'Lj5P786T11' => 'lonja',
		'Lj6C97T3' => 'lonja',
		'Lj8P523T19' => 'lonja',
		'Lj9A24G30' => 'lonja',
		'Lj9A424G33' => 'lonja',
		'Lj9C219G10' => 'lonja',
		'Lj9P219T12' => 'lonja',
		'Lj9P705T22' => 'lonja',
		'Lju114C4T7' => 'lonja',
		'Lju1220C5G5' => 'lonja',
		'Lju2092C1G1' => 'lonja',
		'Lju2092C1T0' => 'lonja',
		'Lju225C6G6' => 'lonja',
		'Lju427C2T0' => 'lonja',
		'Lju50C9T4' => 'lonja',
		'Lju926C12T2' => 'lonja',
		'Manes.06G126602' => 'mes',
		'Manes.13G002614' => 'mes',
		'Manes.15G192966' => 'mes',
		'Manes.17G001483' => 'mes',
		'Manes.17G022547' => 'mes',
		'Manes.18G042825' => 'mes',
		'Manes.S026816' => 'mes',
		'Manes.S027416' => 'mes',
		'MBI02_g15234_MAGBIO' => 'mbi',
		'MBI16_g35584_MAGBIO' => 'mbi',
		'MELO3C008948.2' => 'cme',
		'MELO3C010395.2' => 'cme',
		'MELO3C010396.2' => 'cme',
		'MELO3C015759.2' => 'cme',
		'MELO3C022607.2' => 'cme',
		'MELO3C028897.2' => 'cme',
		'Oeu000188.1' => 'oeu',
		'Oeu002226.1' => 'oeu',
		'Oeu003087.1' => 'oeu',
		'Oeu003392.1' => 'oeu',
		'Oeu003523.1' => 'oeu',
		'Oeu003524.1' => 'oeu',
		'Oeu003528.1' => 'oeu',
		'Oeu003547.2' => 'oeu',
		'Oeu004677.1' => 'oeu',
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		'Sp7g08200' => 'spa',
		'Sp7g09660' => 'spa',
		'SpUn0081_0010' => 'spa',
		'THA.LOC104803417' => 'tha',
		'THA.LOC104817059' => 'tha',
		'Thecc.01G188700' => 'tca',
		'Thecc.05G106700' => 'tca',
		'Thecc.06G068800' => 'tca',
		'Thecc.07G189100' => 'tca',
		'Thecc.09G172800' => 'tca',
		'Thhalv10023044m.g' => 'esa',
		'Thhalv10023881m.g' => 'esa',
		'Thhalv10024067m.g' => 'esa'
	),
	'gf_id' => 'HOM05D000691',
	'gf_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'gf_types_configuration' => array(
		'HOMFAM' => array(
			'order' => '1',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		),
		'ORTHOFAM' => array(
			'order' => '2',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		)
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'allow_async_use' => true,
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D000691'
	),
	'data_identifier' => 'HOM05D000691',
	'data_type' => 'gf_id'
)
$sidebar_info = array(
	'gf_id' => 'HOM05D000691',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '827',
	'num_species' => '39'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$gf_genes = array(
	'Ah.01g012340' => 'amhyb',
	'Ah.01g013530' => 'amhyb',
	'Ah.03g143080' => 'amhyb',
	'Ah.06g186750' => 'amhyb',
	'Ah.06g186800' => 'amhyb',
	'Ah.07g200050' => 'amhyb',
	'Ah.08g209110' => 'amhyb',
	'Ah.09g229600' => 'amhyb',
	'Ah.09g229610' => 'amhyb',
	'Ah.10g026490' => 'amhyb',
	'Ah.12g065350' => 'amhyb',
	'Ah.13g069310' => 'amhyb',
	'Ah.14g080130' => 'amhyb',
	'Ah.14g081130' => 'amhyb',
	'Ah.14g081140' => 'amhyb',
	'Ah.16g109160' => 'amhyb',
	'Ah.16g109170' => 'amhyb',
	'Ah.16g109370' => 'amhyb',
	'AL3G47720' => 'aly',
	'ATR0012G060' => 'atr',
	'ATR0026G029' => 'atr',
	'ATR0193G043' => 'atr',
	'ATR0561G076' => 'atr',
	'ATR0561G181' => 'atr',
	'ATR0568G014' => 'atr',
	'ATR0568G114' => 'atr',
	'ATR0620G039' => 'atr',
	'ATR0629G125' => 'atr',
	'ATR0661G583' => 'atr',
	'ATR0686G019' => 'atr',
	'ATR0693G232' => 'atr',
	'ATR0697G104' => 'atr',
	'ATR0789G146' => 'atr',
	'ATR0794G066' => 'atr',
	'ATR1127G127' => 'atr',
	'ATR1131G040' => 'atr',
	'ATR1134G004' => 'atr',
	'ATR1134G095' => 'atr',
	'ATR1152G110' => 'atr',
	'ATR1153G065' => 'atr',
	'Atru.chr3.2296' => 'acertr',
	'AUR62000692' => 'cqu',
	'AUR62001473' => 'cqu',
	'AUR62001812' => 'cqu',
	'AUR62002706' => 'cqu',
	'AUR62003904' => 'cqu',
	'AUR62003905' => 'cqu',
	'AUR62004840' => 'cqu',
	'AUR62005160' => 'cqu',
	'AUR62005604' => 'cqu',
	'AUR62005891' => 'cqu',
	'AUR62007290' => 'cqu',
	'AUR62007502' => 'cqu',
	'AUR62007923' => 'cqu',
	'AUR62009972' => 'cqu',
	'AUR62010488' => 'cqu',
	'AUR62010643' => 'cqu',
	'AUR62012637' => 'cqu',
	'AUR62013492' => 'cqu',
	'AUR62014239' => 'cqu',
	'AUR62014878' => 'cqu',
	'AUR62015857' => 'cqu',
	'AUR62016224' => 'cqu',
	'AUR62017430' => 'cqu',
	'AUR62017467' => 'cqu',
	'AUR62018234' => 'cqu',
	'AUR62019060' => 'cqu',
	'AUR62019607' => 'cqu',
	'AUR62019661' => 'cqu',
	'AUR62022775' => 'cqu',
	'AUR62023603' => 'cqu',
	'AUR62024563' => 'cqu',
	'AUR62026199' => 'cqu',
	'AUR62026905' => 'cqu',
	'AUR62028639' => 'cqu',
	'AUR62029168' => 'cqu',
	'AUR62029551' => 'cqu',
	'AUR62029860' => 'cqu',
	'AUR62030164' => 'cqu',
	'AUR62031208' => 'cqu',
	'AUR62031287' => 'cqu',
	'AUR62031817' => 'cqu',
	'AUR62032126' => 'cqu',
	'AUR62032358' => 'cqu',
	'AUR62032884' => 'cqu',
	'AUR62032892' => 'cqu',
	'AUR62033082' => 'cqu',
	'AUR62033100' => 'cqu',
	'AUR62033255' => 'cqu',
	'AUR62033698' => 'cqu',
	'AUR62033757' => 'cqu',
	'AUR62034760' => 'cqu',
	'AUR62034860' => 'cqu',
	'AUR62035179' => 'cqu',
	'AUR62035881' => 'cqu',
	'AUR62036824' => 'cqu',
	'AUR62036876' => 'cqu',
	'AUR62037319' => 'cqu',
	'AUR62037362' => 'cqu',
	'AUR62037541' => 'cqu',
	'AUR62037853' => 'cqu',
	'AUR62038299' => 'cqu',
	'AUR62038563' => 'cqu',
	'AUR62038564' => 'cqu',
	'AUR62038594' => 'cqu',
	'AUR62038792' => 'cqu',
	'AUR62038947' => 'cqu',
	'AUR62039030' => 'cqu',
	'AUR62039231' => 'cqu',
	'AUR62039452' => 'cqu',
	'AUR62040334' => 'cqu',
	'AUR62040869' => 'cqu',
	'AUR62040870' => 'cqu',
	'AUR62040916' => 'cqu',
	'AUR62041199' => 'cqu',
	'AUR62041334' => 'cqu',
	'AUR62041608' => 'cqu',
	'AUR62041609' => 'cqu',
	'AUR62041833' => 'cqu',
	'AUR62041834' => 'cqu',
	'AUR62042054' => 'cqu',
	'AUR62042134' => 'cqu',
	'AUR62042236' => 'cqu',
	'AUR62042281' => 'cqu',
	'AUR62042593' => 'cqu',
	'AUR62042653' => 'cqu',
	'AUR62043025' => 'cqu',
	'AUR62043026' => 'cqu',
	'AUR62043063' => 'cqu',
	'AUR62043091' => 'cqu',
	'AUR62043320' => 'cqu',
	'BolC5t32558H' => 'bol',
	'CAN.G1036.12' => 'can',
	'CAN.G1432.23' => 'can',
	'CAN.G159.19' => 'can',
	'CAN.G4114.1' => 'can',
	'CAN.G492.85' => 'can',
	'CAN.G500.95' => 'can',
	'CAN.G93.31' => 'can',
	'CiPaw.04G054900' => 'cil',
	'CiPaw.05G045400' => 'cil',
	'CiPaw.15G094100' => 'cil',
	'ClCG00G000700' => 'cla',
	'ClCG00G000780' => 'cla',
	'ClCG01G012280' => 'cla',
	'ClCG02G006140' => 'cla',
	'ClCG02G009810' => 'cla',
	'ClCG03G010170' => 'cla',
	'ClCG03G010260' => 'cla',
	'ClCG04G000770' => 'cla',
	'ClCG05G013980' => 'cla',
	'ClCG06G009110' => 'cla',
	'ClCG06G009120' => 'cla',
	'ClCG08G002190' => 'cla',
	'ClCG09G013830' => 'cla',
	'ClCG10G006760' => 'cla',
	'ClCG11G007310' => 'cla',
	'COL.COLO4_16141' => 'col',
	'Cpa.g.sc202.2' => 'cpa',
	'Cpa.g.sc76.18' => 'cpa',
	'CsaV3_1G031080' => 'csa',
	'CsaV3_4G011870' => 'csa',
	'CsaV3_4G014860' => 'csa',
	'CsaV3_4G021860' => 'csa',
	'CsaV3_6G009880' => 'csa',
	'CsaV3_7G021240' => 'csa',
	'CsaV3_UNG240600' => 'csa',
	'CSS0003516' => 'camsi',
	'CSS0013023' => 'camsi',
	'CSS0017680' => 'camsi',
	'CSS0018551' => 'camsi',
	'CSS0026792' => 'camsi',
	'CSS0028271' => 'camsi',
	'CSS0033603' => 'camsi',
	'CSS0040789' => 'camsi',
	'CSS0045068' => 'camsi',
	'CSS0045803' => 'camsi',
	'Dinv10528' => 'din',
	'Duzib116G0875' => 'dzi',
	'Duzib128G0055' => 'dzi',
	'EL10Ac1g02377' => 'bvu',
	'EL10Ac1g02378' => 'bvu',
	'EL10Ac2g03486' => 'bvu',
	'EL10Ac2g03487' => 'bvu',
	'EL10Ac3g05722' => 'bvu',
	'EL10Ac3g06186' => 'bvu',
	'EL10Ac5g11258' => 'bvu',
	'EL10Ac6g13831' => 'bvu',
	'EL10Ac6g14162' => 'bvu',
	'EL10Ac6g14316' => 'bvu',
	'EL10Ac6g14317' => 'bvu',
	'EL10Ac6g14588' => 'bvu',
	'EL10Ac7g16302' => 'bvu',
	'EL10Ac7g16543' => 'bvu',
	'EL10Ac8g18762' => 'bvu',
	'EL10Ac9g20847' => 'bvu',
	'EL10As7g23731' => 'bvu',
	'EL10As7g23732' => 'bvu',
	'FvH4_1g23713' => 'fve',
	'FvH4_2g00261' => 'fve',
	'FvH4_2g00262' => 'fve',
	'FvH4_2g15681' => 'fve',
	'FvH4_2g17851' => 'fve',
	'FvH4_3g10531' => 'fve',
	'FvH4_3g33536' => 'fve',
	'FvH4_4g03471' => 'fve',
	'FvH4_4g19351' => 'fve',
	'FvH4_4g34281' => 'fve',
	'FvH4_5g03811' => 'fve',
	'FvH4_5g03812' => 'fve',
	'FvH4_5g11822' => 'fve',
	'FvH4_5g31701' => 'fve',
	'FvH4_6g12161' => 'fve',
	'FvH4_6g15222' => 'fve',
	'FvH4_6g15223' => 'fve',
	'FvH4_6g19301' => 'fve',
	'FvH4_6g33011' => 'fve',
	'FvH4_6g50161' => 'fve',
	'FvH4_7g04123' => 'fve',
	'FvH4_c7g00010' => 'fve',
	'Gorai.012G165300' => 'gra',
	'HanXRQChr00c0452g0574871' => 'han',
	'HanXRQChr01g0029471' => 'han',
	'HanXRQChr05g0133501' => 'han',
	'HanXRQChr10g0280141' => 'han',
	'HanXRQChr10g0280631' => 'han',
	'HanXRQChr13g0409991' => 'han',
	'HanXRQChr15g0468361' => 'han',
	'Hma1.2p1_0021F.1_g014270' => 'hma',
	'Hma1.2p1_0026F.1_g016730' => 'hma',
	'Hma1.2p1_0177F.1_g077930' => 'hma',
	'Hma1.2p1_0370F.1_g137540' => 'hma',
	'Hma1.2p1_0637F.1_g193600' => 'hma',
	'Hma1.2p1_1045F.1_g251360' => 'hma',
	'Hma1.2p1_1168F.1_g263120' => 'hma',
	'Hma1.2p1_1640F.1_g295040' => 'hma',
	'Hma1.2p1_2467F.1_g322660' => 'hma',
	'Hund01785' => 'sun',
	'Hund04739' => 'sun',
	'Hund07717' => 'sun',
	'Hund08060' => 'sun',
	'Hund08734' => 'sun',
	'Hund10876' => 'sun',
	'Hund14991' => 'sun',
	'Hund15051' => 'sun',
	'Hund15082' => 'sun',
	'Hund17998' => 'sun',
	'Hund18526' => 'sun',
	'Hund19828' => 'sun',
	'Hund23384' => 'sun',
	'Hund26399' => 'sun',
	'Hund28766' => 'sun',
	'Hund28768' => 'sun',
	'Lj1A487G33' => 'lonja',
	'Lj1A487G34' => 'lonja',
	'Lj1A489G15' => 'lonja',
	'Lj1C1113T3' => 'lonja',
	'Lj1C3T4' => 'lonja',
	'Lj1C763G4' => 'lonja',
	'Lj1P195T27' => 'lonja',
	'Lj1P573T13' => 'lonja',
	'Lj1P895T45' => 'lonja',
	'Lj1P995G28' => 'lonja',
	'Lj2A1125G46' => 'lonja',
	'Lj2C116T7' => 'lonja',
	'Lj2P295T30' => 'lonja',
	'Lj2P476T23' => 'lonja',
	'Lj2P603T27' => 'lonja',
	'Lj2P609T17' => 'lonja',
	'Lj2P727T24' => 'lonja',
	'Lj3C273T2' => 'lonja',
	'Lj3C644G3' => 'lonja',
	'Lj3C644G4' => 'lonja',
	'Lj3P463T4' => 'lonja',
	'Lj3P545T31' => 'lonja',
	'Lj3P820T55' => 'lonja',
	'Lj4C260T12' => 'lonja',
	'Lj4C714G8' => 'lonja',
	'Lj4P131T14' => 'lonja',
	'Lj4P131T15' => 'lonja',
	'Lj5C102G24' => 'lonja',
	'Lj5P491T3' => 'lonja',
	'Lj5P564T12' => 'lonja',
	'Lj5P786T11' => 'lonja',
	'Lj6C97T3' => 'lonja',
	'Lj8P523T19' => 'lonja',
	'Lj9A24G30' => 'lonja',
	'Lj9A424G33' => 'lonja',
	'Lj9C219G10' => 'lonja',
	'Lj9P219T12' => 'lonja',
	'Lj9P705T22' => 'lonja',
	'Lju114C4T7' => 'lonja',
	'Lju1220C5G5' => 'lonja',
	'Lju2092C1G1' => 'lonja',
	'Lju2092C1T0' => 'lonja',
	'Lju225C6G6' => 'lonja',
	'Lju427C2T0' => 'lonja',
	'Lju50C9T4' => 'lonja',
	'Lju926C12T2' => 'lonja',
	'Manes.06G126602' => 'mes',
	'Manes.13G002614' => 'mes',
	'Manes.15G192966' => 'mes',
	'Manes.17G001483' => 'mes',
	'Manes.17G022547' => 'mes',
	'Manes.18G042825' => 'mes',
	'Manes.S026816' => 'mes',
	'Manes.S027416' => 'mes',
	'MBI02_g15234_MAGBIO' => 'mbi',
	'MBI16_g35584_MAGBIO' => 'mbi',
	'MELO3C008948.2' => 'cme',
	'MELO3C010395.2' => 'cme',
	'MELO3C010396.2' => 'cme',
	'MELO3C015759.2' => 'cme',
	'MELO3C022607.2' => 'cme',
	'MELO3C028897.2' => 'cme',
	'Oeu000188.1' => 'oeu',
	'Oeu002226.1' => 'oeu',
	'Oeu003087.1' => 'oeu',
	'Oeu003392.1' => 'oeu',
	'Oeu003523.1' => 'oeu',
	'Oeu003524.1' => 'oeu',
	'Oeu003528.1' => 'oeu',
	'Oeu003547.2' => 'oeu',
	'Oeu004677.1' => 'oeu',
	'Oeu005362.1' => 'oeu',
	'Oeu005833.1' => 'oeu',
	'Oeu005834.1' => 'oeu',
	'Oeu006751.1' => 'oeu',
	'Oeu007084.1' => 'oeu',
	'Oeu007264.1' => 'oeu',
	'Oeu008153.1' => 'oeu',
	'Oeu008228.1' => 'oeu',
	'Oeu008229.1' => 'oeu',
	'Oeu009580.1' => 'oeu',
	'Oeu010110.1' => 'oeu',
	'Oeu011704.1' => 'oeu',
	'Oeu011912.1' => 'oeu',
	'Oeu012057.1' => 'oeu',
	'Oeu012157.1' => 'oeu',
	'Oeu013775.1' => 'oeu',
	'Oeu013806.1' => 'oeu',
	'Oeu016457.1' => 'oeu',
	'Oeu016803.1' => 'oeu',
	'Oeu017243.2' => 'oeu',
	'Oeu017935.1' => 'oeu',
	'Oeu020246.2' => 'oeu',
	'Oeu020990.1' => 'oeu',
	'Oeu021941.1' => 'oeu',
	'Oeu021986.1' => 'oeu',
	'Oeu023578.1' => 'oeu',
	'Oeu024242.1' => 'oeu',
	'Oeu025087.1' => 'oeu',
	'Oeu025093.1' => 'oeu',
	'Oeu025412.1' => 'oeu',
	'Oeu025520.1' => 'oeu',
	'Oeu026473.1' => 'oeu',
	'Oeu027505.1' => 'oeu',
	'Oeu027530.1' => 'oeu',
	'Oeu027794.2' => 'oeu',
	'Oeu028951.1' => 'oeu',
	'Oeu029141.1' => 'oeu',
	'Oeu029231.4' => 'oeu',
	'Oeu029388.1' => 'oeu',
	'Oeu029673.1' => 'oeu',
	'Oeu029674.1' => 'oeu',
	'Oeu029748.1' => 'oeu',
	'Oeu030224.1' => 'oeu',
	'Oeu030243.1' => 'oeu',
	'Oeu030253.1' => 'oeu',
	'Oeu030414.1' => 'oeu',
	'Oeu030415.1' => 'oeu',
	'Oeu030472.1' => 'oeu',
	'Oeu031432.1' => 'oeu',
	'Oeu031697.1' => 'oeu',
	'Oeu032030.1' => 'oeu',
	'Oeu032031.1' => 'oeu',
	'Oeu032075.1' => 'oeu',
	'Oeu032737.1' => 'oeu',
	'Oeu033407.1' => 'oeu',
	'Oeu033485.1' => 'oeu',
	'Oeu034465.1' => 'oeu',
	'Oeu034951.1' => 'oeu',
	'Oeu036281.1' => 'oeu',
	'Oeu036931.1' => 'oeu',
	'Oeu036932.1' => 'oeu',
	'Oeu037340.1' => 'oeu',
	'Oeu037611.1' => 'oeu',
	'Oeu039205.1' => 'oeu',
	'Oeu039325.1' => 'oeu',
	'Oeu040999.1' => 'oeu',
	'Oeu041244.1' => 'oeu',
	'Oeu041682.1' => 'oeu',
	'Oeu041863.1' => 'oeu',
	'Oeu042345.1' => 'oeu',
	'Oeu042346.1' => 'oeu',
	'Oeu042671.1' => 'oeu',
	'Oeu043273.1' => 'oeu',
	'Oeu043573.1' => 'oeu',
	'Oeu044071.1' => 'oeu',
	'Oeu046813.1' => 'oeu',
	'Oeu048160.1' => 'oeu',
	'Oeu048162.1' => 'oeu',
	'Oeu048282.1' => 'oeu',
	'Oeu048297.1' => 'oeu',
	'Oeu048360.1' => 'oeu',
	'Oeu048565.1' => 'oeu',
	'Oeu049268.1' => 'oeu',
	'Oeu049465.1' => 'oeu',
	'Oeu049978.1' => 'oeu',
	'Oeu050628.1' => 'oeu',
	'Oeu050727.1' => 'oeu',
	'Oeu052065.1' => 'oeu',
	'Oeu052582.1' => 'oeu',
	'Oeu053090.1' => 'oeu',
	'Oeu053644.1' => 'oeu',
	'Oeu053713.1' => 'oeu',
	'Oeu055027.1' => 'oeu',
	'Oeu057741.1' => 'oeu',
	'Oeu058973.1' => 'oeu',
	'Oeu060366.1' => 'oeu',
	'Oeu061428.1' => 'oeu',
	'Oeu062087.1' => 'oeu',
	'Oeu062537.1' => 'oeu',
	'Oeu062538.1' => 'oeu',
	'Oeu064387.1' => 'oeu',
	'PGSC0003DMG400002344' => 'stu',
	'PGSC0003DMG400004046' => 'stu',
	'PGSC0003DMG400006418' => 'stu',
	'PGSC0003DMG400008410' => 'stu',
	'PGSC0003DMG400008620' => 'stu',
	'PGSC0003DMG400009504' => 'stu',
	'PGSC0003DMG400009845' => 'stu',
	'PGSC0003DMG400011177' => 'stu',
	'PGSC0003DMG400011629' => 'stu',
	'PGSC0003DMG400013586' => 'stu',
	'PGSC0003DMG400013599' => 'stu',
	'PGSC0003DMG400014534' => 'stu',
	'PGSC0003DMG400016055' => 'stu',
	'PGSC0003DMG400016736' => 'stu',
	'PGSC0003DMG400016866' => 'stu',
	'PGSC0003DMG400017701' => 'stu',
	'PGSC0003DMG400018448' => 'stu',
	'PGSC0003DMG400020751' => 'stu',
	'PGSC0003DMG400021088' => 'stu',
	'PGSC0003DMG400021387' => 'stu',
	'PGSC0003DMG400021640' => 'stu',
	'PGSC0003DMG400021704' => 'stu',
	'PGSC0003DMG400022155' => 'stu',
	'PGSC0003DMG400023544' => 'stu',
	'PGSC0003DMG400023564' => 'stu',
	'PGSC0003DMG400028558' => 'stu',
	'PGSC0003DMG400028618' => 'stu',
	'PGSC0003DMG400029149' => 'stu',
	'PGSC0003DMG400029979' => 'stu',
	'PGSC0003DMG400030069' => 'stu',
	'PGSC0003DMG400031272' => 'stu',
	'PGSC0003DMG400034656' => 'stu',
	'PGSC0003DMG400035151' => 'stu',
	'PGSC0003DMG400035741' => 'stu',
	'PGSC0003DMG400036100' => 'stu',
	'PGSC0003DMG400037683' => 'stu',
	'PGSC0003DMG400038046' => 'stu',
	'PGSC0003DMG400040121' => 'stu',
	'PGSC0003DMG400042113' => 'stu',
	'PGSC0003DMG400042218' => 'stu',
	'PGSC0003DMG400044188' => 'stu',
	'PGSC0003DMG400044323' => 'stu',
	'PGSC0003DMG400045014' => 'stu',
	'PGSC0003DMG400045177' => 'stu',
	'PGSC0003DMG400047199' => 'stu',
	'Potri.017G071366' => 'ptr',
	'RcHm_v2.0_Chr2g0137481' => 'rch',
	'Sc20g0003180' => 'sci',
	'SEGI_00305' => 'sgi',
	'SEGI_02246' => 'sgi',
	'SEGI_03696' => 'sgi',
	'SEGI_05490' => 'sgi',
	'SEGI_05682' => 'sgi',
	'SEGI_05900' => 'sgi',
	'SEGI_06517' => 'sgi',
	'SEGI_12587' => 'sgi',
	'SEGI_13129' => 'sgi',
	'SEGI_16935' => 'sgi',
	'SEGI_18008' => 'sgi',
	'SEGI_18224' => 'sgi',
	'SEGI_20188' => 'sgi',
	'SEGI_20772' => 'sgi',
	'SEGI_20842' => 'sgi',
	'SEGI_22270' => 'sgi',
	'SEGI_22705' => 'sgi',
	'SEGI_23638' => 'sgi',
	'SEGI_23928' => 'sgi',
	'SEGI_24790' => 'sgi',
	'SEGI_28421' => 'sgi',
	'SEGI_28832' => 'sgi',
	'SEGI_29884' => 'sgi',
	'SEGI_30829' => 'sgi',
	'SEGI_35046' => 'sgi',
	'SEGI_35582' => 'sgi',
	'SEGI_37882' => 'sgi',
	'SEGI_39680' => 'sgi',
	'SEGI_40069' => 'sgi',
	'SEGI_40087' => 'sgi',
	'SEGI_41606' => 'sgi',
	'SGA_v2.0_scaffold50G18578' => 'sas',
	'SHI00293' => 'shi',
	'SHI00389' => 'shi',
	'SHI00445' => 'shi',
	'SHI01000' => 'shi',
	'SHI01503' => 'shi',
	'SHI01718' => 'shi',
	'SHI03454' => 'shi',
	'SHI03493' => 'shi',
	'SHI03494' => 'shi',
	'SHI03628' => 'shi',
	'SHI04457' => 'shi',
	'SHI04691' => 'shi',
	'SHI04829' => 'shi',
	'SHI05225' => 'shi',
	'SHI06326' => 'shi',
	'SHI06505' => 'shi',
	'SHI06770' => 'shi',
	'SHI07388' => 'shi',
	'SHI07582' => 'shi',
	'SHI07583' => 'shi',
	'SHI08271' => 'shi',
	'SHI10619' => 'shi',
	'SHI10892' => 'shi',
	'SHI10910' => 'shi',
	'SHI10911' => 'shi',
	'SHI14326' => 'shi',
	'SHI14681' => 'shi',
	'SHI15017' => 'shi',
	'SHI15096' => 'shi',
	'SHI15120' => 'shi',
	'SHI15274' => 'shi',
	'SHI16232' => 'shi',
	'SHI16811' => 'shi',
	'SHI17386' => 'shi',
	'SHI17926' => 'shi',
	'SHI18293' => 'shi',
	'SHI20489' => 'shi',
	'SHI20658' => 'shi',
	'SHI20663' => 'shi',
	'SHI21566' => 'shi',
	'SHI22547' => 'shi',
	'SHI22708' => 'shi',
	'SHI22709' => 'shi',
	'SHI22878' => 'shi',
	'SHI22879' => 'shi',
	'SHI23024' => 'shi',
	'SHI25053' => 'shi',
	'SHI25076' => 'shi',
	'SHI25116' => 'shi',
	'SHI25381' => 'shi',
	'SHI25535' => 'shi',
	'SHI25740' => 'shi',
	'SHI25991' => 'shi',
	'SHI26344' => 'shi',
	'SHI26345' => 'shi',
	'SHI27097' => 'shi',
	'SHI27140' => 'shi',
	'SHI27178' => 'shi',
	'SHI27207' => 'shi',
	'SHI27225' => 'shi',
	'SHI27734' => 'shi',
	'SHI27806' => 'shi',
	'SHI28576' => 'shi',
	'SHI29081' => 'shi',
	'SHI30038' => 'shi',
	'SHI30394' => 'shi',
	'SHI30652' => 'shi',
	'SHI32154' => 'shi',
	'SHI32205' => 'shi',
	'SHI32365' => 'shi',
	'SHI32439' => 'shi',
	'SHI32505' => 'shi',
	'SHI32626' => 'shi',
	'SHI32714' => 'shi',
	'SHI32715' => 'shi',
	'SHI32716' => 'shi',
	'SHI33118' => 'shi',
	'SHI33318' => 'shi',
	'SHI33373' => 'shi',
	'SHI33512' => 'shi',
	'SHI33625' => 'shi',
	'SHI34327' => 'shi',
	'SHI35604' => 'shi',
	'SHI36119' => 'shi',
	'SHI36120' => 'shi',
	'SHI44959' => 'shi',
	'SHI46406' => 'shi',
	'SHI48191' => 'shi',
	'SHI48192' => 'shi',
	'Solyc10g150111.1' => 'sly',
	'Solyc12g062340.2' => 'sly',
	'Sopen00g001750' => 'spe',
	'Sopen00g001820' => 'spe',
	'Sopen00g001830' => 'spe',
	'Sopen00g001890' => 'spe',
	'Sopen00g002240' => 'spe',
	'Sopen00g003950' => 'spe',
	'Sopen00g004130' => 'spe',
	'Sopen00g004810' => 'spe',
	'Sopen00g005120' => 'spe',
	'Sopen00g005190' => 'spe',
	'Sopen00g007000' => 'spe',
	'Sopen00g007210' => 'spe',
	'Sopen00g012840' => 'spe',
	'Sopen00g013060' => 'spe',
	'Sopen00g013610' => 'spe',
	'Sopen00g013630' => 'spe',
	'Sopen01g004610' => 'spe',
	'Sopen01g007660' => 'spe',
	'Sopen01g007750' => 'spe',
	'Sopen01g007760' => 'spe',
	'Sopen01g007770' => 'spe',
	'Sopen01g007860' => 'spe',
	'Sopen01g009130' => 'spe',
	'Sopen01g009820' => 'spe',
	'Sopen01g011240' => 'spe',
	'Sopen01g012740' => 'spe',
	'Sopen01g013840' => 'spe',
	'Sopen01g013850' => 'spe',
	'Sopen01g016140' => 'spe',
	'Sopen01g016150' => 'spe',
	'Sopen01g016830' => 'spe',
	'Sopen01g017260' => 'spe',
	'Sopen01g019000' => 'spe',
	'Sopen01g019690' => 'spe',
	'Sopen01g022160' => 'spe',
	'Sopen01g024000' => 'spe',
	'Sopen01g024670' => 'spe',
	'Sopen01g024770' => 'spe',
	'Sopen01g024900' => 'spe',
	'Sopen01g025130' => 'spe',
	'Sopen01g026370' => 'spe',
	'Sopen01g041640' => 'spe',
	'Sopen01g046930' => 'spe',
	'Sopen02g001360' => 'spe',
	'Sopen02g002010' => 'spe',
	'Sopen02g003600' => 'spe',
	'Sopen02g003730' => 'spe',
	'Sopen02g005430' => 'spe',
	'Sopen02g005510' => 'spe',
	'Sopen02g006840' => 'spe',
	'Sopen02g007390' => 'spe',
	'Sopen02g007420' => 'spe',
	'Sopen02g007540' => 'spe',
	'Sopen02g007920' => 'spe',
	'Sopen02g008960' => 'spe',
	'Sopen02g009450' => 'spe',
	'Sopen02g009460' => 'spe',
	'Sopen02g011320' => 'spe',
	'Sopen02g012680' => 'spe',
	'Sopen02g018090' => 'spe',
	'Sopen02g022140' => 'spe',
	'Sopen03g010330' => 'spe',
	'Sopen03g013130' => 'spe',
	'Sopen03g013180' => 'spe',
	'Sopen03g013230' => 'spe',
	'Sopen03g014110' => 'spe',
	'Sopen03g015260' => 'spe',
	'Sopen03g015790' => 'spe',
	'Sopen03g018360' => 'spe',
	'Sopen03g024470' => 'spe',
	'Sopen03g026800' => 'spe',
	'Sopen04g003180' => 'spe',
	'Sopen04g008260' => 'spe',
	'Sopen04g010320' => 'spe',
	'Sopen04g011020' => 'spe',
	'Sopen04g011200' => 'spe',
	'Sopen04g011280' => 'spe',
	'Sopen04g021910' => 'spe',
	'Sopen04g023870' => 'spe',
	'Sopen05g009880' => 'spe',
	'Sopen05g011580' => 'spe',
	'Sopen05g012230' => 'spe',
	'Sopen05g012500' => 'spe',
	'Sopen05g012560' => 'spe',
	'Sopen05g012570' => 'spe',
	'Sopen05g012760' => 'spe',
	'Sopen05g013710' => 'spe',
	'Sopen05g015050' => 'spe',
	'Sopen05g026090' => 'spe',
	'Sopen05g028020' => 'spe',
	'Sopen05g028610' => 'spe',
	'Sopen05g029300' => 'spe',
	'Sopen06g005520' => 'spe',
	'Sopen06g006750' => 'spe',
	'Sopen06g008160' => 'spe',
	'Sopen06g009120' => 'spe',
	'Sopen06g013550' => 'spe',
	'Sopen06g015340' => 'spe',
	'Sopen06g018330' => 'spe',
	'Sopen06g021630' => 'spe',
	'Sopen06g021650' => 'spe',
	'Sopen07g006730' => 'spe',
	'Sopen07g008690' => 'spe',
	'Sopen07g008700' => 'spe',
	'Sopen07g008720' => 'spe',
	'Sopen07g008870' => 'spe',
	'Sopen07g009400' => 'spe',
	'Sopen07g009410' => 'spe',
	'Sopen07g009470' => 'spe',
	'Sopen07g009540' => 'spe',
	'Sopen07g011060' => 'spe',
	'Sopen07g011110' => 'spe',
	'Sopen07g011820' => 'spe',
	'Sopen07g013260' => 'spe',
	'Sopen07g014740' => 'spe',
	'Sopen07g015160' => 'spe',
	'Sopen07g015230' => 'spe',
	'Sopen07g016240' => 'spe',
	'Sopen07g017200' => 'spe',
	'Sopen07g017810' => 'spe',
	'Sopen07g019030' => 'spe',
	'Sopen07g020430' => 'spe',
	'Sopen07g021010' => 'spe',
	'Sopen07g021340' => 'spe',
	'Sopen07g022950' => 'spe',
	'Sopen07g027860' => 'spe',
	'Sopen08g007820' => 'spe',
	'Sopen08g009330' => 'spe',
	'Sopen08g012310' => 'spe',
	'Sopen08g012560' => 'spe',
	'Sopen08g014040' => 'spe',
	'Sopen08g014650' => 'spe',
	'Sopen08g017020' => 'spe',
	'Sopen08g018300' => 'spe',
	'Sopen08g020530' => 'spe',
	'Sopen09g008590' => 'spe',
	'Sopen09g008780' => 'spe',
	'Sopen09g011540' => 'spe',
	'Sopen09g011920' => 'spe',
	'Sopen09g014170' => 'spe',
	'Sopen09g016520' => 'spe',
	'Sopen09g021030' => 'spe',
	'Sopen09g023110' => 'spe',
	'Sopen09g024750' => 'spe',
	'Sopen09g025230' => 'spe',
	'Sopen09g025600' => 'spe',
	'Sopen09g034660' => 'spe',
	'Sopen10g006700' => 'spe',
	'Sopen10g009130' => 'spe',
	'Sopen10g009140' => 'spe',
	'Sopen10g009560' => 'spe',
	'Sopen10g010340' => 'spe',
	'Sopen10g011040' => 'spe',
	'Sopen10g013650' => 'spe',
	'Sopen10g014130' => 'spe',
	'Sopen10g014140' => 'spe',
	'Sopen10g014760' => 'spe',
	'Sopen10g015080' => 'spe',
	'Sopen10g015830' => 'spe',
	'Sopen10g018240' => 'spe',
	'Sopen10g018300' => 'spe',
	'Sopen10g018350' => 'spe',
	'Sopen10g018460' => 'spe',
	'Sopen10g018670' => 'spe',
	'Sopen10g019040' => 'spe',
	'Sopen10g019330' => 'spe',
	'Sopen10g019340' => 'spe',
	'Sopen10g019360' => 'spe',
	'Sopen10g019370' => 'spe',
	'Sopen10g020620' => 'spe',
	'Sopen10g021550' => 'spe',
	'Sopen10g022160' => 'spe',
	'Sopen10g023540' => 'spe',
	'Sopen10g023570' => 'spe',
	'Sopen10g023580' => 'spe',
	'Sopen10g023600' => 'spe',
	'Sopen10g023620' => 'spe',
	'Sopen10g023650' => 'spe',
	'Sopen10g024800' => 'spe',
	'Sopen10g026170' => 'spe',
	'Sopen11g007790' => 'spe',
	'Sopen11g010170' => 'spe',
	'Sopen11g010580' => 'spe',
	'Sopen11g013420' => 'spe',
	'Sopen11g016330' => 'spe',
	'Sopen11g017010' => 'spe',
	'Sopen11g018110' => 'spe',
	'Sopen11g018960' => 'spe',
	'Sopen11g019000' => 'spe',
	'Sopen11g019970' => 'spe',
	'Sopen11g020340' => 'spe',
	'Sopen11g020970' => 'spe',
	'Sopen12g008510' => 'spe',
	'Sopen12g008910' => 'spe',
	'Sopen12g009010' => 'spe',
	'Sopen12g009120' => 'spe',
	'Sopen12g009340' => 'spe',
	'Sopen12g009580' => 'spe',
	'Sopen12g010190' => 'spe',
	'Sopen12g010320' => 'spe',
	'Sopen12g010370' => 'spe',
	'Sopen12g012140' => 'spe',
	'Sopen12g012700' => 'spe',
	'Sopen12g013490' => 'spe',
	'Sopen12g014290' => 'spe',
	'Sopen12g015060' => 'spe',
	'Sopen12g015610' => 'spe',
	'Sopen12g018380' => 'spe',
	'Sopen12g019150' => 'spe',
	'Sopen12g020560' => 'spe',
	'Sopen12g023320' => 'spe',
	'Sp3g24190' => 'spa',
	'Sp4g07270' => 'spa',
	'Sp4g07530' => 'spa',
	'Sp4g07670' => 'spa',
	'Sp6g09360' => 'spa',
	'Sp7g04180' => 'spa',
	'Sp7g04980' => 'spa',
	'Sp7g08200' => 'spa',
	'Sp7g09660' => 'spa',
	'SpUn0081_0010' => 'spa',
	'THA.LOC104803417' => 'tha',
	'THA.LOC104817059' => 'tha',
	'Thecc.01G188700' => 'tca',
	'Thecc.05G106700' => 'tca',
	'Thecc.06G068800' => 'tca',
	'Thecc.07G189100' => 'tca',
	'Thecc.09G172800' => 'tca',
	'Thhalv10023044m.g' => 'esa',
	'Thhalv10023881m.g' => 'esa',
	'Thhalv10024067m.g' => 'esa'
)
$gf_id = 'HOM05D000691'
$gf_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$gf_types_configuration = array(
	'HOMFAM' => array(
		'order' => '1',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	),
	'ORTHOFAM' => array(
		'order' => '2',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	)
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$allow_async_use = true
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D000691'
)
$data_identifier = 'HOM05D000691'
$data_type = 'gf_id'
$species_gene_counts = array(
	'amhyb' => (int) 18,
	'aly' => (int) 1,
	'atr' => (int) 21,
	'acertr' => (int) 1,
	'cqu' => (int) 90,
	'bol' => (int) 1,
	'can' => (int) 7,
	'cil' => (int) 3,
	'cla' => (int) 15,
	'col' => (int) 1,
	'cpa' => (int) 2,
	'csa' => (int) 7,
	'camsi' => (int) 10,
	'din' => (int) 1,
	'dzi' => (int) 2,
	'bvu' => (int) 18,
	'fve' => (int) 22,
	'gra' => (int) 1,
	'han' => (int) 7,
	'hma' => (int) 9,
	'sun' => (int) 16,
	'lonja' => (int) 46,
	'mes' => (int) 8,
	'mbi' => (int) 2,
	'cme' => (int) 6,
	'oeu' => (int) 110,
	'stu' => (int) 45,
	'ptr' => (int) 1,
	'rch' => (int) 1,
	'sci' => (int) 1,
	'sgi' => (int) 31,
	'sas' => (int) 1,
	'shi' => (int) 89,
	'sly' => (int) 2,
	'spe' => (int) 211,
	'spa' => (int) 10,
	'tha' => (int) 2,
	'tca' => (int) 5,
	'esa' => (int) 3
)
$gf_gene_species = 'esa'
$gf_gene_id = 'Thhalv10024067m.g'
$species_info = array(
	'species' => 'atr',
	'common_name' => 'Amborella trichopoda',
	'tax_id' => '13333',
	'version' => 'JGI v1.0'
)
$local_species = 'atr'
$disabled = ''
$selected = ''
$num_hits = (int) 1
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Analysis/custom_tree_creation.ctp, line 27
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933

Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]
Code Context
        $disabled    = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";

        $selected    = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";

        $num_hits    = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D000691',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '827',
		'num_species' => '39'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'gf_genes' => array(
		'Ah.01g012340' => 'amhyb',
		'Ah.01g013530' => 'amhyb',
		'Ah.03g143080' => 'amhyb',
		'Ah.06g186750' => 'amhyb',
		'Ah.06g186800' => 'amhyb',
		'Ah.07g200050' => 'amhyb',
		'Ah.08g209110' => 'amhyb',
		'Ah.09g229600' => 'amhyb',
		'Ah.09g229610' => 'amhyb',
		'Ah.10g026490' => 'amhyb',
		'Ah.12g065350' => 'amhyb',
		'Ah.13g069310' => 'amhyb',
		'Ah.14g080130' => 'amhyb',
		'Ah.14g081130' => 'amhyb',
		'Ah.14g081140' => 'amhyb',
		'Ah.16g109160' => 'amhyb',
		'Ah.16g109170' => 'amhyb',
		'Ah.16g109370' => 'amhyb',
		'AL3G47720' => 'aly',
		'ATR0012G060' => 'atr',
		'ATR0026G029' => 'atr',
		'ATR0193G043' => 'atr',
		'ATR0561G076' => 'atr',
		'ATR0561G181' => 'atr',
		'ATR0568G014' => 'atr',
		'ATR0568G114' => 'atr',
		'ATR0620G039' => 'atr',
		'ATR0629G125' => 'atr',
		'ATR0661G583' => 'atr',
		'ATR0686G019' => 'atr',
		'ATR0693G232' => 'atr',
		'ATR0697G104' => 'atr',
		'ATR0789G146' => 'atr',
		'ATR0794G066' => 'atr',
		'ATR1127G127' => 'atr',
		'ATR1131G040' => 'atr',
		'ATR1134G004' => 'atr',
		'ATR1134G095' => 'atr',
		'ATR1152G110' => 'atr',
		'ATR1153G065' => 'atr',
		'Atru.chr3.2296' => 'acertr',
		'AUR62000692' => 'cqu',
		'AUR62001473' => 'cqu',
		'AUR62001812' => 'cqu',
		'AUR62002706' => 'cqu',
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		'SHI00293' => 'shi',
		'SHI00389' => 'shi',
		'SHI00445' => 'shi',
		'SHI01000' => 'shi',
		'SHI01503' => 'shi',
		'SHI01718' => 'shi',
		'SHI03454' => 'shi',
		'SHI03493' => 'shi',
		'SHI03494' => 'shi',
		'SHI03628' => 'shi',
		'SHI04457' => 'shi',
		'SHI04691' => 'shi',
		'SHI04829' => 'shi',
		'SHI05225' => 'shi',
		'SHI06326' => 'shi',
		'SHI06505' => 'shi',
		'SHI06770' => 'shi',
		'SHI07388' => 'shi',
		'SHI07582' => 'shi',
		'SHI07583' => 'shi',
		'SHI08271' => 'shi',
		'SHI10619' => 'shi',
		'SHI10892' => 'shi',
		'SHI10910' => 'shi',
		'SHI10911' => 'shi',
		'SHI14326' => 'shi',
		'SHI14681' => 'shi',
		'SHI15017' => 'shi',
		'SHI15096' => 'shi',
		'SHI15120' => 'shi',
		'SHI15274' => 'shi',
		'SHI16232' => 'shi',
		'SHI16811' => 'shi',
		'SHI17386' => 'shi',
		'SHI17926' => 'shi',
		'SHI18293' => 'shi',
		'SHI20489' => 'shi',
		'SHI20658' => 'shi',
		'SHI20663' => 'shi',
		'SHI21566' => 'shi',
		'SHI22547' => 'shi',
		'SHI22708' => 'shi',
		'SHI22709' => 'shi',
		'SHI22878' => 'shi',
		'SHI22879' => 'shi',
		'SHI23024' => 'shi',
		'SHI25053' => 'shi',
		'SHI25076' => 'shi',
		'SHI25116' => 'shi',
		'SHI25381' => 'shi',
		'SHI25535' => 'shi',
		'SHI25740' => 'shi',
		'SHI25991' => 'shi',
		'SHI26344' => 'shi',
		'SHI26345' => 'shi',
		'SHI27097' => 'shi',
		'SHI27140' => 'shi',
		'SHI27178' => 'shi',
		'SHI27207' => 'shi',
		'SHI27225' => 'shi',
		'SHI27734' => 'shi',
		'SHI27806' => 'shi',
		'SHI28576' => 'shi',
		'SHI29081' => 'shi',
		'SHI30038' => 'shi',
		'SHI30394' => 'shi',
		'SHI30652' => 'shi',
		'SHI32154' => 'shi',
		'SHI32205' => 'shi',
		'SHI32365' => 'shi',
		'SHI32439' => 'shi',
		'SHI32505' => 'shi',
		'SHI32626' => 'shi',
		'SHI32714' => 'shi',
		'SHI32715' => 'shi',
		'SHI32716' => 'shi',
		'SHI33118' => 'shi',
		'SHI33318' => 'shi',
		'SHI33373' => 'shi',
		'SHI33512' => 'shi',
		'SHI33625' => 'shi',
		'SHI34327' => 'shi',
		'SHI35604' => 'shi',
		'SHI36119' => 'shi',
		'SHI36120' => 'shi',
		'SHI44959' => 'shi',
		'SHI46406' => 'shi',
		'SHI48191' => 'shi',
		'SHI48192' => 'shi',
		'Solyc10g150111.1' => 'sly',
		'Solyc12g062340.2' => 'sly',
		'Sopen00g001750' => 'spe',
		'Sopen00g001820' => 'spe',
		'Sopen00g001830' => 'spe',
		'Sopen00g001890' => 'spe',
		'Sopen00g002240' => 'spe',
		'Sopen00g003950' => 'spe',
		'Sopen00g004130' => 'spe',
		'Sopen00g004810' => 'spe',
		'Sopen00g005120' => 'spe',
		'Sopen00g005190' => 'spe',
		'Sopen00g007000' => 'spe',
		'Sopen00g007210' => 'spe',
		'Sopen00g012840' => 'spe',
		'Sopen00g013060' => 'spe',
		'Sopen00g013610' => 'spe',
		'Sopen00g013630' => 'spe',
		'Sopen01g004610' => 'spe',
		'Sopen01g007660' => 'spe',
		'Sopen01g007750' => 'spe',
		'Sopen01g007760' => 'spe',
		'Sopen01g007770' => 'spe',
		'Sopen01g007860' => 'spe',
		'Sopen01g009130' => 'spe',
		'Sopen01g009820' => 'spe',
		'Sopen01g011240' => 'spe',
		'Sopen01g012740' => 'spe',
		'Sopen01g013840' => 'spe',
		'Sopen01g013850' => 'spe',
		'Sopen01g016140' => 'spe',
		'Sopen01g016150' => 'spe',
		'Sopen01g016830' => 'spe',
		'Sopen01g017260' => 'spe',
		'Sopen01g019000' => 'spe',
		'Sopen01g019690' => 'spe',
		'Sopen01g022160' => 'spe',
		'Sopen01g024000' => 'spe',
		'Sopen01g024670' => 'spe',
		'Sopen01g024770' => 'spe',
		'Sopen01g024900' => 'spe',
		'Sopen01g025130' => 'spe',
		'Sopen01g026370' => 'spe',
		'Sopen01g041640' => 'spe',
		'Sopen01g046930' => 'spe',
		'Sopen02g001360' => 'spe',
		'Sopen02g002010' => 'spe',
		'Sopen02g003600' => 'spe',
		'Sopen02g003730' => 'spe',
		'Sopen02g005430' => 'spe',
		'Sopen02g005510' => 'spe',
		'Sopen02g006840' => 'spe',
		'Sopen02g007390' => 'spe',
		'Sopen02g007420' => 'spe',
		'Sopen02g007540' => 'spe',
		'Sopen02g007920' => 'spe',
		'Sopen02g008960' => 'spe',
		'Sopen02g009450' => 'spe',
		'Sopen02g009460' => 'spe',
		'Sopen02g011320' => 'spe',
		'Sopen02g012680' => 'spe',
		'Sopen02g018090' => 'spe',
		'Sopen02g022140' => 'spe',
		'Sopen03g010330' => 'spe',
		'Sopen03g013130' => 'spe',
		'Sopen03g013180' => 'spe',
		'Sopen03g013230' => 'spe',
		'Sopen03g014110' => 'spe',
		'Sopen03g015260' => 'spe',
		'Sopen03g015790' => 'spe',
		'Sopen03g018360' => 'spe',
		'Sopen03g024470' => 'spe',
		'Sopen03g026800' => 'spe',
		'Sopen04g003180' => 'spe',
		'Sopen04g008260' => 'spe',
		'Sopen04g010320' => 'spe',
		'Sopen04g011020' => 'spe',
		'Sopen04g011200' => 'spe',
		'Sopen04g011280' => 'spe',
		'Sopen04g021910' => 'spe',
		'Sopen04g023870' => 'spe',
		'Sopen05g009880' => 'spe',
		'Sopen05g011580' => 'spe',
		'Sopen05g012230' => 'spe',
		'Sopen05g012500' => 'spe',
		'Sopen05g012560' => 'spe',
		'Sopen05g012570' => 'spe',
		'Sopen05g012760' => 'spe',
		'Sopen05g013710' => 'spe',
		'Sopen05g015050' => 'spe',
		'Sopen05g026090' => 'spe',
		'Sopen05g028020' => 'spe',
		'Sopen05g028610' => 'spe',
		'Sopen05g029300' => 'spe',
		'Sopen06g005520' => 'spe',
		'Sopen06g006750' => 'spe',
		'Sopen06g008160' => 'spe',
		'Sopen06g009120' => 'spe',
		'Sopen06g013550' => 'spe',
		'Sopen06g015340' => 'spe',
		'Sopen06g018330' => 'spe',
		'Sopen06g021630' => 'spe',
		'Sopen06g021650' => 'spe',
		'Sopen07g006730' => 'spe',
		'Sopen07g008690' => 'spe',
		'Sopen07g008700' => 'spe',
		'Sopen07g008720' => 'spe',
		'Sopen07g008870' => 'spe',
		'Sopen07g009400' => 'spe',
		'Sopen07g009410' => 'spe',
		'Sopen07g009470' => 'spe',
		'Sopen07g009540' => 'spe',
		'Sopen07g011060' => 'spe',
		'Sopen07g011110' => 'spe',
		'Sopen07g011820' => 'spe',
		'Sopen07g013260' => 'spe',
		'Sopen07g014740' => 'spe',
		'Sopen07g015160' => 'spe',
		'Sopen07g015230' => 'spe',
		'Sopen07g016240' => 'spe',
		'Sopen07g017200' => 'spe',
		'Sopen07g017810' => 'spe',
		'Sopen07g019030' => 'spe',
		'Sopen07g020430' => 'spe',
		'Sopen07g021010' => 'spe',
		'Sopen07g021340' => 'spe',
		'Sopen07g022950' => 'spe',
		'Sopen07g027860' => 'spe',
		'Sopen08g007820' => 'spe',
		'Sopen08g009330' => 'spe',
		'Sopen08g012310' => 'spe',
		'Sopen08g012560' => 'spe',
		'Sopen08g014040' => 'spe',
		'Sopen08g014650' => 'spe',
		'Sopen08g017020' => 'spe',
		'Sopen08g018300' => 'spe',
		'Sopen08g020530' => 'spe',
		'Sopen09g008590' => 'spe',
		'Sopen09g008780' => 'spe',
		'Sopen09g011540' => 'spe',
		'Sopen09g011920' => 'spe',
		'Sopen09g014170' => 'spe',
		'Sopen09g016520' => 'spe',
		'Sopen09g021030' => 'spe',
		'Sopen09g023110' => 'spe',
		'Sopen09g024750' => 'spe',
		'Sopen09g025230' => 'spe',
		'Sopen09g025600' => 'spe',
		'Sopen09g034660' => 'spe',
		'Sopen10g006700' => 'spe',
		'Sopen10g009130' => 'spe',
		'Sopen10g009140' => 'spe',
		'Sopen10g009560' => 'spe',
		'Sopen10g010340' => 'spe',
		'Sopen10g011040' => 'spe',
		'Sopen10g013650' => 'spe',
		'Sopen10g014130' => 'spe',
		'Sopen10g014140' => 'spe',
		'Sopen10g014760' => 'spe',
		'Sopen10g015080' => 'spe',
		'Sopen10g015830' => 'spe',
		'Sopen10g018240' => 'spe',
		'Sopen10g018300' => 'spe',
		'Sopen10g018350' => 'spe',
		'Sopen10g018460' => 'spe',
		'Sopen10g018670' => 'spe',
		'Sopen10g019040' => 'spe',
		'Sopen10g019330' => 'spe',
		'Sopen10g019340' => 'spe',
		'Sopen10g019360' => 'spe',
		'Sopen10g019370' => 'spe',
		'Sopen10g020620' => 'spe',
		'Sopen10g021550' => 'spe',
		'Sopen10g022160' => 'spe',
		'Sopen10g023540' => 'spe',
		'Sopen10g023570' => 'spe',
		'Sopen10g023580' => 'spe',
		'Sopen10g023600' => 'spe',
		'Sopen10g023620' => 'spe',
		'Sopen10g023650' => 'spe',
		'Sopen10g024800' => 'spe',
		'Sopen10g026170' => 'spe',
		'Sopen11g007790' => 'spe',
		'Sopen11g010170' => 'spe',
		'Sopen11g010580' => 'spe',
		'Sopen11g013420' => 'spe',
		'Sopen11g016330' => 'spe',
		'Sopen11g017010' => 'spe',
		'Sopen11g018110' => 'spe',
		'Sopen11g018960' => 'spe',
		'Sopen11g019000' => 'spe',
		'Sopen11g019970' => 'spe',
		'Sopen11g020340' => 'spe',
		'Sopen11g020970' => 'spe',
		'Sopen12g008510' => 'spe',
		'Sopen12g008910' => 'spe',
		'Sopen12g009010' => 'spe',
		'Sopen12g009120' => 'spe',
		'Sopen12g009340' => 'spe',
		'Sopen12g009580' => 'spe',
		'Sopen12g010190' => 'spe',
		'Sopen12g010320' => 'spe',
		'Sopen12g010370' => 'spe',
		'Sopen12g012140' => 'spe',
		'Sopen12g012700' => 'spe',
		'Sopen12g013490' => 'spe',
		'Sopen12g014290' => 'spe',
		'Sopen12g015060' => 'spe',
		'Sopen12g015610' => 'spe',
		'Sopen12g018380' => 'spe',
		'Sopen12g019150' => 'spe',
		'Sopen12g020560' => 'spe',
		'Sopen12g023320' => 'spe',
		'Sp3g24190' => 'spa',
		'Sp4g07270' => 'spa',
		'Sp4g07530' => 'spa',
		'Sp4g07670' => 'spa',
		'Sp6g09360' => 'spa',
		'Sp7g04180' => 'spa',
		'Sp7g04980' => 'spa',
		'Sp7g08200' => 'spa',
		'Sp7g09660' => 'spa',
		'SpUn0081_0010' => 'spa',
		'THA.LOC104803417' => 'tha',
		'THA.LOC104817059' => 'tha',
		'Thecc.01G188700' => 'tca',
		'Thecc.05G106700' => 'tca',
		'Thecc.06G068800' => 'tca',
		'Thecc.07G189100' => 'tca',
		'Thecc.09G172800' => 'tca',
		'Thhalv10023044m.g' => 'esa',
		'Thhalv10023881m.g' => 'esa',
		'Thhalv10024067m.g' => 'esa'
	),
	'gf_id' => 'HOM05D000691',
	'gf_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'gf_types_configuration' => array(
		'HOMFAM' => array(
			'order' => '1',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		),
		'ORTHOFAM' => array(
			'order' => '2',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		)
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'allow_async_use' => true,
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D000691'
	),
	'data_identifier' => 'HOM05D000691',
	'data_type' => 'gf_id'
)
$sidebar_info = array(
	'gf_id' => 'HOM05D000691',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '827',
	'num_species' => '39'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$gf_genes = array(
	'Ah.01g012340' => 'amhyb',
	'Ah.01g013530' => 'amhyb',
	'Ah.03g143080' => 'amhyb',
	'Ah.06g186750' => 'amhyb',
	'Ah.06g186800' => 'amhyb',
	'Ah.07g200050' => 'amhyb',
	'Ah.08g209110' => 'amhyb',
	'Ah.09g229600' => 'amhyb',
	'Ah.09g229610' => 'amhyb',
	'Ah.10g026490' => 'amhyb',
	'Ah.12g065350' => 'amhyb',
	'Ah.13g069310' => 'amhyb',
	'Ah.14g080130' => 'amhyb',
	'Ah.14g081130' => 'amhyb',
	'Ah.14g081140' => 'amhyb',
	'Ah.16g109160' => 'amhyb',
	'Ah.16g109170' => 'amhyb',
	'Ah.16g109370' => 'amhyb',
	'AL3G47720' => 'aly',
	'ATR0012G060' => 'atr',
	'ATR0026G029' => 'atr',
	'ATR0193G043' => 'atr',
	'ATR0561G076' => 'atr',
	'ATR0561G181' => 'atr',
	'ATR0568G014' => 'atr',
	'ATR0568G114' => 'atr',
	'ATR0620G039' => 'atr',
	'ATR0629G125' => 'atr',
	'ATR0661G583' => 'atr',
	'ATR0686G019' => 'atr',
	'ATR0693G232' => 'atr',
	'ATR0697G104' => 'atr',
	'ATR0789G146' => 'atr',
	'ATR0794G066' => 'atr',
	'ATR1127G127' => 'atr',
	'ATR1131G040' => 'atr',
	'ATR1134G004' => 'atr',
	'ATR1134G095' => 'atr',
	'ATR1152G110' => 'atr',
	'ATR1153G065' => 'atr',
	'Atru.chr3.2296' => 'acertr',
	'AUR62000692' => 'cqu',
	'AUR62001473' => 'cqu',
	'AUR62001812' => 'cqu',
	'AUR62002706' => 'cqu',
	'AUR62003904' => 'cqu',
	'AUR62003905' => 'cqu',
	'AUR62004840' => 'cqu',
	'AUR62005160' => 'cqu',
	'AUR62005604' => 'cqu',
	'AUR62005891' => 'cqu',
	'AUR62007290' => 'cqu',
	'AUR62007502' => 'cqu',
	'AUR62007923' => 'cqu',
	'AUR62009972' => 'cqu',
	'AUR62010488' => 'cqu',
	'AUR62010643' => 'cqu',
	'AUR62012637' => 'cqu',
	'AUR62013492' => 'cqu',
	'AUR62014239' => 'cqu',
	'AUR62014878' => 'cqu',
	'AUR62015857' => 'cqu',
	'AUR62016224' => 'cqu',
	'AUR62017430' => 'cqu',
	'AUR62017467' => 'cqu',
	'AUR62018234' => 'cqu',
	'AUR62019060' => 'cqu',
	'AUR62019607' => 'cqu',
	'AUR62019661' => 'cqu',
	'AUR62022775' => 'cqu',
	'AUR62023603' => 'cqu',
	'AUR62024563' => 'cqu',
	'AUR62026199' => 'cqu',
	'AUR62026905' => 'cqu',
	'AUR62028639' => 'cqu',
	'AUR62029168' => 'cqu',
	'AUR62029551' => 'cqu',
	'AUR62029860' => 'cqu',
	'AUR62030164' => 'cqu',
	'AUR62031208' => 'cqu',
	'AUR62031287' => 'cqu',
	'AUR62031817' => 'cqu',
	'AUR62032126' => 'cqu',
	'AUR62032358' => 'cqu',
	'AUR62032884' => 'cqu',
	'AUR62032892' => 'cqu',
	'AUR62033082' => 'cqu',
	'AUR62033100' => 'cqu',
	'AUR62033255' => 'cqu',
	'AUR62033698' => 'cqu',
	'AUR62033757' => 'cqu',
	'AUR62034760' => 'cqu',
	'AUR62034860' => 'cqu',
	'AUR62035179' => 'cqu',
	'AUR62035881' => 'cqu',
	'AUR62036824' => 'cqu',
	'AUR62036876' => 'cqu',
	'AUR62037319' => 'cqu',
	'AUR62037362' => 'cqu',
	'AUR62037541' => 'cqu',
	'AUR62037853' => 'cqu',
	'AUR62038299' => 'cqu',
	'AUR62038563' => 'cqu',
	'AUR62038564' => 'cqu',
	'AUR62038594' => 'cqu',
	'AUR62038792' => 'cqu',
	'AUR62038947' => 'cqu',
	'AUR62039030' => 'cqu',
	'AUR62039231' => 'cqu',
	'AUR62039452' => 'cqu',
	'AUR62040334' => 'cqu',
	'AUR62040869' => 'cqu',
	'AUR62040870' => 'cqu',
	'AUR62040916' => 'cqu',
	'AUR62041199' => 'cqu',
	'AUR62041334' => 'cqu',
	'AUR62041608' => 'cqu',
	'AUR62041609' => 'cqu',
	'AUR62041833' => 'cqu',
	'AUR62041834' => 'cqu',
	'AUR62042054' => 'cqu',
	'AUR62042134' => 'cqu',
	'AUR62042236' => 'cqu',
	'AUR62042281' => 'cqu',
	'AUR62042593' => 'cqu',
	'AUR62042653' => 'cqu',
	'AUR62043025' => 'cqu',
	'AUR62043026' => 'cqu',
	'AUR62043063' => 'cqu',
	'AUR62043091' => 'cqu',
	'AUR62043320' => 'cqu',
	'BolC5t32558H' => 'bol',
	'CAN.G1036.12' => 'can',
	'CAN.G1432.23' => 'can',
	'CAN.G159.19' => 'can',
	'CAN.G4114.1' => 'can',
	'CAN.G492.85' => 'can',
	'CAN.G500.95' => 'can',
	'CAN.G93.31' => 'can',
	'CiPaw.04G054900' => 'cil',
	'CiPaw.05G045400' => 'cil',
	'CiPaw.15G094100' => 'cil',
	'ClCG00G000700' => 'cla',
	'ClCG00G000780' => 'cla',
	'ClCG01G012280' => 'cla',
	'ClCG02G006140' => 'cla',
	'ClCG02G009810' => 'cla',
	'ClCG03G010170' => 'cla',
	'ClCG03G010260' => 'cla',
	'ClCG04G000770' => 'cla',
	'ClCG05G013980' => 'cla',
	'ClCG06G009110' => 'cla',
	'ClCG06G009120' => 'cla',
	'ClCG08G002190' => 'cla',
	'ClCG09G013830' => 'cla',
	'ClCG10G006760' => 'cla',
	'ClCG11G007310' => 'cla',
	'COL.COLO4_16141' => 'col',
	'Cpa.g.sc202.2' => 'cpa',
	'Cpa.g.sc76.18' => 'cpa',
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	'Sopen03g018360' => 'spe',
	'Sopen03g024470' => 'spe',
	'Sopen03g026800' => 'spe',
	'Sopen04g003180' => 'spe',
	'Sopen04g008260' => 'spe',
	'Sopen04g010320' => 'spe',
	'Sopen04g011020' => 'spe',
	'Sopen04g011200' => 'spe',
	'Sopen04g011280' => 'spe',
	'Sopen04g021910' => 'spe',
	'Sopen04g023870' => 'spe',
	'Sopen05g009880' => 'spe',
	'Sopen05g011580' => 'spe',
	'Sopen05g012230' => 'spe',
	'Sopen05g012500' => 'spe',
	'Sopen05g012560' => 'spe',
	'Sopen05g012570' => 'spe',
	'Sopen05g012760' => 'spe',
	'Sopen05g013710' => 'spe',
	'Sopen05g015050' => 'spe',
	'Sopen05g026090' => 'spe',
	'Sopen05g028020' => 'spe',
	'Sopen05g028610' => 'spe',
	'Sopen05g029300' => 'spe',
	'Sopen06g005520' => 'spe',
	'Sopen06g006750' => 'spe',
	'Sopen06g008160' => 'spe',
	'Sopen06g009120' => 'spe',
	'Sopen06g013550' => 'spe',
	'Sopen06g015340' => 'spe',
	'Sopen06g018330' => 'spe',
	'Sopen06g021630' => 'spe',
	'Sopen06g021650' => 'spe',
	'Sopen07g006730' => 'spe',
	'Sopen07g008690' => 'spe',
	'Sopen07g008700' => 'spe',
	'Sopen07g008720' => 'spe',
	'Sopen07g008870' => 'spe',
	'Sopen07g009400' => 'spe',
	'Sopen07g009410' => 'spe',
	'Sopen07g009470' => 'spe',
	'Sopen07g009540' => 'spe',
	'Sopen07g011060' => 'spe',
	'Sopen07g011110' => 'spe',
	'Sopen07g011820' => 'spe',
	'Sopen07g013260' => 'spe',
	'Sopen07g014740' => 'spe',
	'Sopen07g015160' => 'spe',
	'Sopen07g015230' => 'spe',
	'Sopen07g016240' => 'spe',
	'Sopen07g017200' => 'spe',
	'Sopen07g017810' => 'spe',
	'Sopen07g019030' => 'spe',
	'Sopen07g020430' => 'spe',
	'Sopen07g021010' => 'spe',
	'Sopen07g021340' => 'spe',
	'Sopen07g022950' => 'spe',
	'Sopen07g027860' => 'spe',
	'Sopen08g007820' => 'spe',
	'Sopen08g009330' => 'spe',
	'Sopen08g012310' => 'spe',
	'Sopen08g012560' => 'spe',
	'Sopen08g014040' => 'spe',
	'Sopen08g014650' => 'spe',
	'Sopen08g017020' => 'spe',
	'Sopen08g018300' => 'spe',
	'Sopen08g020530' => 'spe',
	'Sopen09g008590' => 'spe',
	'Sopen09g008780' => 'spe',
	'Sopen09g011540' => 'spe',
	'Sopen09g011920' => 'spe',
	'Sopen09g014170' => 'spe',
	'Sopen09g016520' => 'spe',
	'Sopen09g021030' => 'spe',
	'Sopen09g023110' => 'spe',
	'Sopen09g024750' => 'spe',
	'Sopen09g025230' => 'spe',
	'Sopen09g025600' => 'spe',
	'Sopen09g034660' => 'spe',
	'Sopen10g006700' => 'spe',
	'Sopen10g009130' => 'spe',
	'Sopen10g009140' => 'spe',
	'Sopen10g009560' => 'spe',
	'Sopen10g010340' => 'spe',
	'Sopen10g011040' => 'spe',
	'Sopen10g013650' => 'spe',
	'Sopen10g014130' => 'spe',
	'Sopen10g014140' => 'spe',
	'Sopen10g014760' => 'spe',
	'Sopen10g015080' => 'spe',
	'Sopen10g015830' => 'spe',
	'Sopen10g018240' => 'spe',
	'Sopen10g018300' => 'spe',
	'Sopen10g018350' => 'spe',
	'Sopen10g018460' => 'spe',
	'Sopen10g018670' => 'spe',
	'Sopen10g019040' => 'spe',
	'Sopen10g019330' => 'spe',
	'Sopen10g019340' => 'spe',
	'Sopen10g019360' => 'spe',
	'Sopen10g019370' => 'spe',
	'Sopen10g020620' => 'spe',
	'Sopen10g021550' => 'spe',
	'Sopen10g022160' => 'spe',
	'Sopen10g023540' => 'spe',
	'Sopen10g023570' => 'spe',
	'Sopen10g023580' => 'spe',
	'Sopen10g023600' => 'spe',
	'Sopen10g023620' => 'spe',
	'Sopen10g023650' => 'spe',
	'Sopen10g024800' => 'spe',
	'Sopen10g026170' => 'spe',
	'Sopen11g007790' => 'spe',
	'Sopen11g010170' => 'spe',
	'Sopen11g010580' => 'spe',
	'Sopen11g013420' => 'spe',
	'Sopen11g016330' => 'spe',
	'Sopen11g017010' => 'spe',
	'Sopen11g018110' => 'spe',
	'Sopen11g018960' => 'spe',
	'Sopen11g019000' => 'spe',
	'Sopen11g019970' => 'spe',
	'Sopen11g020340' => 'spe',
	'Sopen11g020970' => 'spe',
	'Sopen12g008510' => 'spe',
	'Sopen12g008910' => 'spe',
	'Sopen12g009010' => 'spe',
	'Sopen12g009120' => 'spe',
	'Sopen12g009340' => 'spe',
	'Sopen12g009580' => 'spe',
	'Sopen12g010190' => 'spe',
	'Sopen12g010320' => 'spe',
	'Sopen12g010370' => 'spe',
	'Sopen12g012140' => 'spe',
	'Sopen12g012700' => 'spe',
	'Sopen12g013490' => 'spe',
	'Sopen12g014290' => 'spe',
	'Sopen12g015060' => 'spe',
	'Sopen12g015610' => 'spe',
	'Sopen12g018380' => 'spe',
	'Sopen12g019150' => 'spe',
	'Sopen12g020560' => 'spe',
	'Sopen12g023320' => 'spe',
	'Sp3g24190' => 'spa',
	'Sp4g07270' => 'spa',
	'Sp4g07530' => 'spa',
	'Sp4g07670' => 'spa',
	'Sp6g09360' => 'spa',
	'Sp7g04180' => 'spa',
	'Sp7g04980' => 'spa',
	'Sp7g08200' => 'spa',
	'Sp7g09660' => 'spa',
	'SpUn0081_0010' => 'spa',
	'THA.LOC104803417' => 'tha',
	'THA.LOC104817059' => 'tha',
	'Thecc.01G188700' => 'tca',
	'Thecc.05G106700' => 'tca',
	'Thecc.06G068800' => 'tca',
	'Thecc.07G189100' => 'tca',
	'Thecc.09G172800' => 'tca',
	'Thhalv10023044m.g' => 'esa',
	'Thhalv10023881m.g' => 'esa',
	'Thhalv10024067m.g' => 'esa'
)
$gf_id = 'HOM05D000691'
$gf_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$gf_types_configuration = array(
	'HOMFAM' => array(
		'order' => '1',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	),
	'ORTHOFAM' => array(
		'order' => '2',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	)
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$allow_async_use = true
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D000691'
)
$data_identifier = 'HOM05D000691'
$data_type = 'gf_id'
$species_gene_counts = array(
	'amhyb' => (int) 18,
	'aly' => (int) 1,
	'atr' => (int) 21,
	'acertr' => (int) 1,
	'cqu' => (int) 90,
	'bol' => (int) 1,
	'can' => (int) 7,
	'cil' => (int) 3,
	'cla' => (int) 15,
	'col' => (int) 1,
	'cpa' => (int) 2,
	'csa' => (int) 7,
	'camsi' => (int) 10,
	'din' => (int) 1,
	'dzi' => (int) 2,
	'bvu' => (int) 18,
	'fve' => (int) 22,
	'gra' => (int) 1,
	'han' => (int) 7,
	'hma' => (int) 9,
	'sun' => (int) 16,
	'lonja' => (int) 46,
	'mes' => (int) 8,
	'mbi' => (int) 2,
	'cme' => (int) 6,
	'oeu' => (int) 110,
	'stu' => (int) 45,
	'ptr' => (int) 1,
	'rch' => (int) 1,
	'sci' => (int) 1,
	'sgi' => (int) 31,
	'sas' => (int) 1,
	'shi' => (int) 89,
	'sly' => (int) 2,
	'spe' => (int) 211,
	'spa' => (int) 10,
	'tha' => (int) 2,
	'tca' => (int) 5,
	'esa' => (int) 3
)
$gf_gene_species = 'esa'
$gf_gene_id = 'Thhalv10024067m.g'
$species_info = array(
	'species' => 'aly',
	'common_name' => 'Arabidopsis lyrata',
	'tax_id' => '59689',
	'version' => 'JGI v2.1'
)
$local_species = 'aly'
$disabled = ''
$selected = ''
$num_hits = (int) 0
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Analysis/custom_tree_creation.ctp, line 27
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933

Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]
Code Context
        $disabled    = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";

        $selected    = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";

        $num_hits    = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D000691',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '827',
		'num_species' => '39'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'gf_genes' => array(
		'Ah.01g012340' => 'amhyb',
		'Ah.01g013530' => 'amhyb',
		'Ah.03g143080' => 'amhyb',
		'Ah.06g186750' => 'amhyb',
		'Ah.06g186800' => 'amhyb',
		'Ah.07g200050' => 'amhyb',
		'Ah.08g209110' => 'amhyb',
		'Ah.09g229600' => 'amhyb',
		'Ah.09g229610' => 'amhyb',
		'Ah.10g026490' => 'amhyb',
		'Ah.12g065350' => 'amhyb',
		'Ah.13g069310' => 'amhyb',
		'Ah.14g080130' => 'amhyb',
		'Ah.14g081130' => 'amhyb',
		'Ah.14g081140' => 'amhyb',
		'Ah.16g109160' => 'amhyb',
		'Ah.16g109170' => 'amhyb',
		'Ah.16g109370' => 'amhyb',
		'AL3G47720' => 'aly',
		'ATR0012G060' => 'atr',
		'ATR0026G029' => 'atr',
		'ATR0193G043' => 'atr',
		'ATR0561G076' => 'atr',
		'ATR0561G181' => 'atr',
		'ATR0568G014' => 'atr',
		'ATR0568G114' => 'atr',
		'ATR0620G039' => 'atr',
		'ATR0629G125' => 'atr',
		'ATR0661G583' => 'atr',
		'ATR0686G019' => 'atr',
		'ATR0693G232' => 'atr',
		'ATR0697G104' => 'atr',
		'ATR0789G146' => 'atr',
		'ATR0794G066' => 'atr',
		'ATR1127G127' => 'atr',
		'ATR1131G040' => 'atr',
		'ATR1134G004' => 'atr',
		'ATR1134G095' => 'atr',
		'ATR1152G110' => 'atr',
		'ATR1153G065' => 'atr',
		'Atru.chr3.2296' => 'acertr',
		'AUR62000692' => 'cqu',
		'AUR62001473' => 'cqu',
		'AUR62001812' => 'cqu',
		'AUR62002706' => 'cqu',
		'AUR62003904' => 'cqu',
		'AUR62003905' => 'cqu',
		'AUR62004840' => 'cqu',
		'AUR62005160' => 'cqu',
		'AUR62005604' => 'cqu',
		'AUR62005891' => 'cqu',
		'AUR62007290' => 'cqu',
		'AUR62007502' => 'cqu',
		'AUR62007923' => 'cqu',
		'AUR62009972' => 'cqu',
		'AUR62010488' => 'cqu',
		'AUR62010643' => 'cqu',
		'AUR62012637' => 'cqu',
		'AUR62013492' => 'cqu',
		'AUR62014239' => 'cqu',
		'AUR62014878' => 'cqu',
		'AUR62015857' => 'cqu',
		'AUR62016224' => 'cqu',
		'AUR62017430' => 'cqu',
		'AUR62017467' => 'cqu',
		'AUR62018234' => 'cqu',
		'AUR62019060' => 'cqu',
		'AUR62019607' => 'cqu',
		'AUR62019661' => 'cqu',
		'AUR62022775' => 'cqu',
		'AUR62023603' => 'cqu',
		'AUR62024563' => 'cqu',
		'AUR62026199' => 'cqu',
		'AUR62026905' => 'cqu',
		'AUR62028639' => 'cqu',
		'AUR62029168' => 'cqu',
		'AUR62029551' => 'cqu',
		'AUR62029860' => 'cqu',
		'AUR62030164' => 'cqu',
		'AUR62031208' => 'cqu',
		'AUR62031287' => 'cqu',
		'AUR62031817' => 'cqu',
		'AUR62032126' => 'cqu',
		'AUR62032358' => 'cqu',
		'AUR62032884' => 'cqu',
		'AUR62032892' => 'cqu',
		'AUR62033082' => 'cqu',
		'AUR62033100' => 'cqu',
		'AUR62033255' => 'cqu',
		'AUR62033698' => 'cqu',
		'AUR62033757' => 'cqu',
		'AUR62034760' => 'cqu',
		'AUR62034860' => 'cqu',
		'AUR62035179' => 'cqu',
		'AUR62035881' => 'cqu',
		'AUR62036824' => 'cqu',
		'AUR62036876' => 'cqu',
		'AUR62037319' => 'cqu',
		'AUR62037362' => 'cqu',
		'AUR62037541' => 'cqu',
		'AUR62037853' => 'cqu',
		'AUR62038299' => 'cqu',
		'AUR62038563' => 'cqu',
		'AUR62038564' => 'cqu',
		'AUR62038594' => 'cqu',
		'AUR62038792' => 'cqu',
		'AUR62038947' => 'cqu',
		'AUR62039030' => 'cqu',
		'AUR62039231' => 'cqu',
		'AUR62039452' => 'cqu',
		'AUR62040334' => 'cqu',
		'AUR62040869' => 'cqu',
		'AUR62040870' => 'cqu',
		'AUR62040916' => 'cqu',
		'AUR62041199' => 'cqu',
		'AUR62041334' => 'cqu',
		'AUR62041608' => 'cqu',
		'AUR62041609' => 'cqu',
		'AUR62041833' => 'cqu',
		'AUR62041834' => 'cqu',
		'AUR62042054' => 'cqu',
		'AUR62042134' => 'cqu',
		'AUR62042236' => 'cqu',
		'AUR62042281' => 'cqu',
		'AUR62042593' => 'cqu',
		'AUR62042653' => 'cqu',
		'AUR62043025' => 'cqu',
		'AUR62043026' => 'cqu',
		'AUR62043063' => 'cqu',
		'AUR62043091' => 'cqu',
		'AUR62043320' => 'cqu',
		'BolC5t32558H' => 'bol',
		'CAN.G1036.12' => 'can',
		'CAN.G1432.23' => 'can',
		'CAN.G159.19' => 'can',
		'CAN.G4114.1' => 'can',
		'CAN.G492.85' => 'can',
		'CAN.G500.95' => 'can',
		'CAN.G93.31' => 'can',
		'CiPaw.04G054900' => 'cil',
		'CiPaw.05G045400' => 'cil',
		'CiPaw.15G094100' => 'cil',
		'ClCG00G000700' => 'cla',
		'ClCG00G000780' => 'cla',
		'ClCG01G012280' => 'cla',
		'ClCG02G006140' => 'cla',
		'ClCG02G009810' => 'cla',
		'ClCG03G010170' => 'cla',
		'ClCG03G010260' => 'cla',
		'ClCG04G000770' => 'cla',
		'ClCG05G013980' => 'cla',
		'ClCG06G009110' => 'cla',
		'ClCG06G009120' => 'cla',
		'ClCG08G002190' => 'cla',
		'ClCG09G013830' => 'cla',
		'ClCG10G006760' => 'cla',
		'ClCG11G007310' => 'cla',
		'COL.COLO4_16141' => 'col',
		'Cpa.g.sc202.2' => 'cpa',
		'Cpa.g.sc76.18' => 'cpa',
		'CsaV3_1G031080' => 'csa',
		'CsaV3_4G011870' => 'csa',
		'CsaV3_4G014860' => 'csa',
		'CsaV3_4G021860' => 'csa',
		'CsaV3_6G009880' => 'csa',
		'CsaV3_7G021240' => 'csa',
		'CsaV3_UNG240600' => 'csa',
		'CSS0003516' => 'camsi',
		'CSS0013023' => 'camsi',
		'CSS0017680' => 'camsi',
		'CSS0018551' => 'camsi',
		'CSS0026792' => 'camsi',
		'CSS0028271' => 'camsi',
		'CSS0033603' => 'camsi',
		'CSS0040789' => 'camsi',
		'CSS0045068' => 'camsi',
		'CSS0045803' => 'camsi',
		'Dinv10528' => 'din',
		'Duzib116G0875' => 'dzi',
		'Duzib128G0055' => 'dzi',
		'EL10Ac1g02377' => 'bvu',
		'EL10Ac1g02378' => 'bvu',
		'EL10Ac2g03486' => 'bvu',
		'EL10Ac2g03487' => 'bvu',
		'EL10Ac3g05722' => 'bvu',
		'EL10Ac3g06186' => 'bvu',
		'EL10Ac5g11258' => 'bvu',
		'EL10Ac6g13831' => 'bvu',
		'EL10Ac6g14162' => 'bvu',
		'EL10Ac6g14316' => 'bvu',
		'EL10Ac6g14317' => 'bvu',
		'EL10Ac6g14588' => 'bvu',
		'EL10Ac7g16302' => 'bvu',
		'EL10Ac7g16543' => 'bvu',
		'EL10Ac8g18762' => 'bvu',
		'EL10Ac9g20847' => 'bvu',
		'EL10As7g23731' => 'bvu',
		'EL10As7g23732' => 'bvu',
		'FvH4_1g23713' => 'fve',
		'FvH4_2g00261' => 'fve',
		'FvH4_2g00262' => 'fve',
		'FvH4_2g15681' => 'fve',
		'FvH4_2g17851' => 'fve',
		'FvH4_3g10531' => 'fve',
		'FvH4_3g33536' => 'fve',
		'FvH4_4g03471' => 'fve',
		'FvH4_4g19351' => 'fve',
		'FvH4_4g34281' => 'fve',
		'FvH4_5g03811' => 'fve',
		'FvH4_5g03812' => 'fve',
		'FvH4_5g11822' => 'fve',
		'FvH4_5g31701' => 'fve',
		'FvH4_6g12161' => 'fve',
		'FvH4_6g15222' => 'fve',
		'FvH4_6g15223' => 'fve',
		'FvH4_6g19301' => 'fve',
		'FvH4_6g33011' => 'fve',
		'FvH4_6g50161' => 'fve',
		'FvH4_7g04123' => 'fve',
		'FvH4_c7g00010' => 'fve',
		'Gorai.012G165300' => 'gra',
		'HanXRQChr00c0452g0574871' => 'han',
		'HanXRQChr01g0029471' => 'han',
		'HanXRQChr05g0133501' => 'han',
		'HanXRQChr10g0280141' => 'han',
		'HanXRQChr10g0280631' => 'han',
		'HanXRQChr13g0409991' => 'han',
		'HanXRQChr15g0468361' => 'han',
		'Hma1.2p1_0021F.1_g014270' => 'hma',
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		'Sopen07g014740' => 'spe',
		'Sopen07g015160' => 'spe',
		'Sopen07g015230' => 'spe',
		'Sopen07g016240' => 'spe',
		'Sopen07g017200' => 'spe',
		'Sopen07g017810' => 'spe',
		'Sopen07g019030' => 'spe',
		'Sopen07g020430' => 'spe',
		'Sopen07g021010' => 'spe',
		'Sopen07g021340' => 'spe',
		'Sopen07g022950' => 'spe',
		'Sopen07g027860' => 'spe',
		'Sopen08g007820' => 'spe',
		'Sopen08g009330' => 'spe',
		'Sopen08g012310' => 'spe',
		'Sopen08g012560' => 'spe',
		'Sopen08g014040' => 'spe',
		'Sopen08g014650' => 'spe',
		'Sopen08g017020' => 'spe',
		'Sopen08g018300' => 'spe',
		'Sopen08g020530' => 'spe',
		'Sopen09g008590' => 'spe',
		'Sopen09g008780' => 'spe',
		'Sopen09g011540' => 'spe',
		'Sopen09g011920' => 'spe',
		'Sopen09g014170' => 'spe',
		'Sopen09g016520' => 'spe',
		'Sopen09g021030' => 'spe',
		'Sopen09g023110' => 'spe',
		'Sopen09g024750' => 'spe',
		'Sopen09g025230' => 'spe',
		'Sopen09g025600' => 'spe',
		'Sopen09g034660' => 'spe',
		'Sopen10g006700' => 'spe',
		'Sopen10g009130' => 'spe',
		'Sopen10g009140' => 'spe',
		'Sopen10g009560' => 'spe',
		'Sopen10g010340' => 'spe',
		'Sopen10g011040' => 'spe',
		'Sopen10g013650' => 'spe',
		'Sopen10g014130' => 'spe',
		'Sopen10g014140' => 'spe',
		'Sopen10g014760' => 'spe',
		'Sopen10g015080' => 'spe',
		'Sopen10g015830' => 'spe',
		'Sopen10g018240' => 'spe',
		'Sopen10g018300' => 'spe',
		'Sopen10g018350' => 'spe',
		'Sopen10g018460' => 'spe',
		'Sopen10g018670' => 'spe',
		'Sopen10g019040' => 'spe',
		'Sopen10g019330' => 'spe',
		'Sopen10g019340' => 'spe',
		'Sopen10g019360' => 'spe',
		'Sopen10g019370' => 'spe',
		'Sopen10g020620' => 'spe',
		'Sopen10g021550' => 'spe',
		'Sopen10g022160' => 'spe',
		'Sopen10g023540' => 'spe',
		'Sopen10g023570' => 'spe',
		'Sopen10g023580' => 'spe',
		'Sopen10g023600' => 'spe',
		'Sopen10g023620' => 'spe',
		'Sopen10g023650' => 'spe',
		'Sopen10g024800' => 'spe',
		'Sopen10g026170' => 'spe',
		'Sopen11g007790' => 'spe',
		'Sopen11g010170' => 'spe',
		'Sopen11g010580' => 'spe',
		'Sopen11g013420' => 'spe',
		'Sopen11g016330' => 'spe',
		'Sopen11g017010' => 'spe',
		'Sopen11g018110' => 'spe',
		'Sopen11g018960' => 'spe',
		'Sopen11g019000' => 'spe',
		'Sopen11g019970' => 'spe',
		'Sopen11g020340' => 'spe',
		'Sopen11g020970' => 'spe',
		'Sopen12g008510' => 'spe',
		'Sopen12g008910' => 'spe',
		'Sopen12g009010' => 'spe',
		'Sopen12g009120' => 'spe',
		'Sopen12g009340' => 'spe',
		'Sopen12g009580' => 'spe',
		'Sopen12g010190' => 'spe',
		'Sopen12g010320' => 'spe',
		'Sopen12g010370' => 'spe',
		'Sopen12g012140' => 'spe',
		'Sopen12g012700' => 'spe',
		'Sopen12g013490' => 'spe',
		'Sopen12g014290' => 'spe',
		'Sopen12g015060' => 'spe',
		'Sopen12g015610' => 'spe',
		'Sopen12g018380' => 'spe',
		'Sopen12g019150' => 'spe',
		'Sopen12g020560' => 'spe',
		'Sopen12g023320' => 'spe',
		'Sp3g24190' => 'spa',
		'Sp4g07270' => 'spa',
		'Sp4g07530' => 'spa',
		'Sp4g07670' => 'spa',
		'Sp6g09360' => 'spa',
		'Sp7g04180' => 'spa',
		'Sp7g04980' => 'spa',
		'Sp7g08200' => 'spa',
		'Sp7g09660' => 'spa',
		'SpUn0081_0010' => 'spa',
		'THA.LOC104803417' => 'tha',
		'THA.LOC104817059' => 'tha',
		'Thecc.01G188700' => 'tca',
		'Thecc.05G106700' => 'tca',
		'Thecc.06G068800' => 'tca',
		'Thecc.07G189100' => 'tca',
		'Thecc.09G172800' => 'tca',
		'Thhalv10023044m.g' => 'esa',
		'Thhalv10023881m.g' => 'esa',
		'Thhalv10024067m.g' => 'esa'
	),
	'gf_id' => 'HOM05D000691',
	'gf_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'gf_types_configuration' => array(
		'HOMFAM' => array(
			'order' => '1',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		),
		'ORTHOFAM' => array(
			'order' => '2',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		)
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'allow_async_use' => true,
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D000691'
	),
	'data_identifier' => 'HOM05D000691',
	'data_type' => 'gf_id'
)
$sidebar_info = array(
	'gf_id' => 'HOM05D000691',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '827',
	'num_species' => '39'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$gf_genes = array(
	'Ah.01g012340' => 'amhyb',
	'Ah.01g013530' => 'amhyb',
	'Ah.03g143080' => 'amhyb',
	'Ah.06g186750' => 'amhyb',
	'Ah.06g186800' => 'amhyb',
	'Ah.07g200050' => 'amhyb',
	'Ah.08g209110' => 'amhyb',
	'Ah.09g229600' => 'amhyb',
	'Ah.09g229610' => 'amhyb',
	'Ah.10g026490' => 'amhyb',
	'Ah.12g065350' => 'amhyb',
	'Ah.13g069310' => 'amhyb',
	'Ah.14g080130' => 'amhyb',
	'Ah.14g081130' => 'amhyb',
	'Ah.14g081140' => 'amhyb',
	'Ah.16g109160' => 'amhyb',
	'Ah.16g109170' => 'amhyb',
	'Ah.16g109370' => 'amhyb',
	'AL3G47720' => 'aly',
	'ATR0012G060' => 'atr',
	'ATR0026G029' => 'atr',
	'ATR0193G043' => 'atr',
	'ATR0561G076' => 'atr',
	'ATR0561G181' => 'atr',
	'ATR0568G014' => 'atr',
	'ATR0568G114' => 'atr',
	'ATR0620G039' => 'atr',
	'ATR0629G125' => 'atr',
	'ATR0661G583' => 'atr',
	'ATR0686G019' => 'atr',
	'ATR0693G232' => 'atr',
	'ATR0697G104' => 'atr',
	'ATR0789G146' => 'atr',
	'ATR0794G066' => 'atr',
	'ATR1127G127' => 'atr',
	'ATR1131G040' => 'atr',
	'ATR1134G004' => 'atr',
	'ATR1134G095' => 'atr',
	'ATR1152G110' => 'atr',
	'ATR1153G065' => 'atr',
	'Atru.chr3.2296' => 'acertr',
	'AUR62000692' => 'cqu',
	'AUR62001473' => 'cqu',
	'AUR62001812' => 'cqu',
	'AUR62002706' => 'cqu',
	'AUR62003904' => 'cqu',
	'AUR62003905' => 'cqu',
	'AUR62004840' => 'cqu',
	'AUR62005160' => 'cqu',
	'AUR62005604' => 'cqu',
	'AUR62005891' => 'cqu',
	'AUR62007290' => 'cqu',
	'AUR62007502' => 'cqu',
	'AUR62007923' => 'cqu',
	'AUR62009972' => 'cqu',
	'AUR62010488' => 'cqu',
	'AUR62010643' => 'cqu',
	'AUR62012637' => 'cqu',
	'AUR62013492' => 'cqu',
	'AUR62014239' => 'cqu',
	'AUR62014878' => 'cqu',
	'AUR62015857' => 'cqu',
	'AUR62016224' => 'cqu',
	'AUR62017430' => 'cqu',
	'AUR62017467' => 'cqu',
	'AUR62018234' => 'cqu',
	'AUR62019060' => 'cqu',
	'AUR62019607' => 'cqu',
	'AUR62019661' => 'cqu',
	'AUR62022775' => 'cqu',
	'AUR62023603' => 'cqu',
	'AUR62024563' => 'cqu',
	'AUR62026199' => 'cqu',
	'AUR62026905' => 'cqu',
	'AUR62028639' => 'cqu',
	'AUR62029168' => 'cqu',
	'AUR62029551' => 'cqu',
	'AUR62029860' => 'cqu',
	'AUR62030164' => 'cqu',
	'AUR62031208' => 'cqu',
	'AUR62031287' => 'cqu',
	'AUR62031817' => 'cqu',
	'AUR62032126' => 'cqu',
	'AUR62032358' => 'cqu',
	'AUR62032884' => 'cqu',
	'AUR62032892' => 'cqu',
	'AUR62033082' => 'cqu',
	'AUR62033100' => 'cqu',
	'AUR62033255' => 'cqu',
	'AUR62033698' => 'cqu',
	'AUR62033757' => 'cqu',
	'AUR62034760' => 'cqu',
	'AUR62034860' => 'cqu',
	'AUR62035179' => 'cqu',
	'AUR62035881' => 'cqu',
	'AUR62036824' => 'cqu',
	'AUR62036876' => 'cqu',
	'AUR62037319' => 'cqu',
	'AUR62037362' => 'cqu',
	'AUR62037541' => 'cqu',
	'AUR62037853' => 'cqu',
	'AUR62038299' => 'cqu',
	'AUR62038563' => 'cqu',
	'AUR62038564' => 'cqu',
	'AUR62038594' => 'cqu',
	'AUR62038792' => 'cqu',
	'AUR62038947' => 'cqu',
	'AUR62039030' => 'cqu',
	'AUR62039231' => 'cqu',
	'AUR62039452' => 'cqu',
	'AUR62040334' => 'cqu',
	'AUR62040869' => 'cqu',
	'AUR62040870' => 'cqu',
	'AUR62040916' => 'cqu',
	'AUR62041199' => 'cqu',
	'AUR62041334' => 'cqu',
	'AUR62041608' => 'cqu',
	'AUR62041609' => 'cqu',
	'AUR62041833' => 'cqu',
	'AUR62041834' => 'cqu',
	'AUR62042054' => 'cqu',
	'AUR62042134' => 'cqu',
	'AUR62042236' => 'cqu',
	'AUR62042281' => 'cqu',
	'AUR62042593' => 'cqu',
	'AUR62042653' => 'cqu',
	'AUR62043025' => 'cqu',
	'AUR62043026' => 'cqu',
	'AUR62043063' => 'cqu',
	'AUR62043091' => 'cqu',
	'AUR62043320' => 'cqu',
	'BolC5t32558H' => 'bol',
	'CAN.G1036.12' => 'can',
	'CAN.G1432.23' => 'can',
	'CAN.G159.19' => 'can',
	'CAN.G4114.1' => 'can',
	'CAN.G492.85' => 'can',
	'CAN.G500.95' => 'can',
	'CAN.G93.31' => 'can',
	'CiPaw.04G054900' => 'cil',
	'CiPaw.05G045400' => 'cil',
	'CiPaw.15G094100' => 'cil',
	'ClCG00G000700' => 'cla',
	'ClCG00G000780' => 'cla',
	'ClCG01G012280' => 'cla',
	'ClCG02G006140' => 'cla',
	'ClCG02G009810' => 'cla',
	'ClCG03G010170' => 'cla',
	'ClCG03G010260' => 'cla',
	'ClCG04G000770' => 'cla',
	'ClCG05G013980' => 'cla',
	'ClCG06G009110' => 'cla',
	'ClCG06G009120' => 'cla',
	'ClCG08G002190' => 'cla',
	'ClCG09G013830' => 'cla',
	'ClCG10G006760' => 'cla',
	'ClCG11G007310' => 'cla',
	'COL.COLO4_16141' => 'col',
	'Cpa.g.sc202.2' => 'cpa',
	'Cpa.g.sc76.18' => 'cpa',
	'CsaV3_1G031080' => 'csa',
	'CsaV3_4G011870' => 'csa',
	'CsaV3_4G014860' => 'csa',
	'CsaV3_4G021860' => 'csa',
	'CsaV3_6G009880' => 'csa',
	'CsaV3_7G021240' => 'csa',
	'CsaV3_UNG240600' => 'csa',
	'CSS0003516' => 'camsi',
	'CSS0013023' => 'camsi',
	'CSS0017680' => 'camsi',
	'CSS0018551' => 'camsi',
	'CSS0026792' => 'camsi',
	'CSS0028271' => 'camsi',
	'CSS0033603' => 'camsi',
	'CSS0040789' => 'camsi',
	'CSS0045068' => 'camsi',
	'CSS0045803' => 'camsi',
	'Dinv10528' => 'din',
	'Duzib116G0875' => 'dzi',
	'Duzib128G0055' => 'dzi',
	'EL10Ac1g02377' => 'bvu',
	'EL10Ac1g02378' => 'bvu',
	'EL10Ac2g03486' => 'bvu',
	'EL10Ac2g03487' => 'bvu',
	'EL10Ac3g05722' => 'bvu',
	'EL10Ac3g06186' => 'bvu',
	'EL10Ac5g11258' => 'bvu',
	'EL10Ac6g13831' => 'bvu',
	'EL10Ac6g14162' => 'bvu',
	'EL10Ac6g14316' => 'bvu',
	'EL10Ac6g14317' => 'bvu',
	'EL10Ac6g14588' => 'bvu',
	'EL10Ac7g16302' => 'bvu',
	'EL10Ac7g16543' => 'bvu',
	'EL10Ac8g18762' => 'bvu',
	'EL10Ac9g20847' => 'bvu',
	'EL10As7g23731' => 'bvu',
	'EL10As7g23732' => 'bvu',
	'FvH4_1g23713' => 'fve',
	'FvH4_2g00261' => 'fve',
	'FvH4_2g00262' => 'fve',
	'FvH4_2g15681' => 'fve',
	'FvH4_2g17851' => 'fve',
	'FvH4_3g10531' => 'fve',
	'FvH4_3g33536' => 'fve',
	'FvH4_4g03471' => 'fve',
	'FvH4_4g19351' => 'fve',
	'FvH4_4g34281' => 'fve',
	'FvH4_5g03811' => 'fve',
	'FvH4_5g03812' => 'fve',
	'FvH4_5g11822' => 'fve',
	'FvH4_5g31701' => 'fve',
	'FvH4_6g12161' => 'fve',
	'FvH4_6g15222' => 'fve',
	'FvH4_6g15223' => 'fve',
	'FvH4_6g19301' => 'fve',
	'FvH4_6g33011' => 'fve',
	'FvH4_6g50161' => 'fve',
	'FvH4_7g04123' => 'fve',
	'FvH4_c7g00010' => 'fve',
	'Gorai.012G165300' => 'gra',
	'HanXRQChr00c0452g0574871' => 'han',
	'HanXRQChr01g0029471' => 'han',
	'HanXRQChr05g0133501' => 'han',
	'HanXRQChr10g0280141' => 'han',
	'HanXRQChr10g0280631' => 'han',
	'HanXRQChr13g0409991' => 'han',
	'HanXRQChr15g0468361' => 'han',
	'Hma1.2p1_0021F.1_g014270' => 'hma',
	'Hma1.2p1_0026F.1_g016730' => 'hma',
	'Hma1.2p1_0177F.1_g077930' => 'hma',
	'Hma1.2p1_0370F.1_g137540' => 'hma',
	'Hma1.2p1_0637F.1_g193600' => 'hma',
	'Hma1.2p1_1045F.1_g251360' => 'hma',
	'Hma1.2p1_1168F.1_g263120' => 'hma',
	'Hma1.2p1_1640F.1_g295040' => 'hma',
	'Hma1.2p1_2467F.1_g322660' => 'hma',
	'Hund01785' => 'sun',
	'Hund04739' => 'sun',
	'Hund07717' => 'sun',
	'Hund08060' => 'sun',
	'Hund08734' => 'sun',
	'Hund10876' => 'sun',
	'Hund14991' => 'sun',
	'Hund15051' => 'sun',
	'Hund15082' => 'sun',
	'Hund17998' => 'sun',
	'Hund18526' => 'sun',
	'Hund19828' => 'sun',
	'Hund23384' => 'sun',
	'Hund26399' => 'sun',
	'Hund28766' => 'sun',
	'Hund28768' => 'sun',
	'Lj1A487G33' => 'lonja',
	'Lj1A487G34' => 'lonja',
	'Lj1A489G15' => 'lonja',
	'Lj1C1113T3' => 'lonja',
	'Lj1C3T4' => 'lonja',
	'Lj1C763G4' => 'lonja',
	'Lj1P195T27' => 'lonja',
	'Lj1P573T13' => 'lonja',
	'Lj1P895T45' => 'lonja',
	'Lj1P995G28' => 'lonja',
	'Lj2A1125G46' => 'lonja',
	'Lj2C116T7' => 'lonja',
	'Lj2P295T30' => 'lonja',
	'Lj2P476T23' => 'lonja',
	'Lj2P603T27' => 'lonja',
	'Lj2P609T17' => 'lonja',
	'Lj2P727T24' => 'lonja',
	'Lj3C273T2' => 'lonja',
	'Lj3C644G3' => 'lonja',
	'Lj3C644G4' => 'lonja',
	'Lj3P463T4' => 'lonja',
	'Lj3P545T31' => 'lonja',
	'Lj3P820T55' => 'lonja',
	'Lj4C260T12' => 'lonja',
	'Lj4C714G8' => 'lonja',
	'Lj4P131T14' => 'lonja',
	'Lj4P131T15' => 'lonja',
	'Lj5C102G24' => 'lonja',
	'Lj5P491T3' => 'lonja',
	'Lj5P564T12' => 'lonja',
	'Lj5P786T11' => 'lonja',
	'Lj6C97T3' => 'lonja',
	'Lj8P523T19' => 'lonja',
	'Lj9A24G30' => 'lonja',
	'Lj9A424G33' => 'lonja',
	'Lj9C219G10' => 'lonja',
	'Lj9P219T12' => 'lonja',
	'Lj9P705T22' => 'lonja',
	'Lju114C4T7' => 'lonja',
	'Lju1220C5G5' => 'lonja',
	'Lju2092C1G1' => 'lonja',
	'Lju2092C1T0' => 'lonja',
	'Lju225C6G6' => 'lonja',
	'Lju427C2T0' => 'lonja',
	'Lju50C9T4' => 'lonja',
	'Lju926C12T2' => 'lonja',
	'Manes.06G126602' => 'mes',
	'Manes.13G002614' => 'mes',
	'Manes.15G192966' => 'mes',
	'Manes.17G001483' => 'mes',
	'Manes.17G022547' => 'mes',
	'Manes.18G042825' => 'mes',
	'Manes.S026816' => 'mes',
	'Manes.S027416' => 'mes',
	'MBI02_g15234_MAGBIO' => 'mbi',
	'MBI16_g35584_MAGBIO' => 'mbi',
	'MELO3C008948.2' => 'cme',
	'MELO3C010395.2' => 'cme',
	'MELO3C010396.2' => 'cme',
	'MELO3C015759.2' => 'cme',
	'MELO3C022607.2' => 'cme',
	'MELO3C028897.2' => 'cme',
	'Oeu000188.1' => 'oeu',
	'Oeu002226.1' => 'oeu',
	'Oeu003087.1' => 'oeu',
	'Oeu003392.1' => 'oeu',
	'Oeu003523.1' => 'oeu',
	'Oeu003524.1' => 'oeu',
	'Oeu003528.1' => 'oeu',
	'Oeu003547.2' => 'oeu',
	'Oeu004677.1' => 'oeu',
	'Oeu005362.1' => 'oeu',
	'Oeu005833.1' => 'oeu',
	'Oeu005834.1' => 'oeu',
	'Oeu006751.1' => 'oeu',
	'Oeu007084.1' => 'oeu',
	'Oeu007264.1' => 'oeu',
	'Oeu008153.1' => 'oeu',
	'Oeu008228.1' => 'oeu',
	'Oeu008229.1' => 'oeu',
	'Oeu009580.1' => 'oeu',
	'Oeu010110.1' => 'oeu',
	'Oeu011704.1' => 'oeu',
	'Oeu011912.1' => 'oeu',
	'Oeu012057.1' => 'oeu',
	'Oeu012157.1' => 'oeu',
	'Oeu013775.1' => 'oeu',
	'Oeu013806.1' => 'oeu',
	'Oeu016457.1' => 'oeu',
	'Oeu016803.1' => 'oeu',
	'Oeu017243.2' => 'oeu',
	'Oeu017935.1' => 'oeu',
	'Oeu020246.2' => 'oeu',
	'Oeu020990.1' => 'oeu',
	'Oeu021941.1' => 'oeu',
	'Oeu021986.1' => 'oeu',
	'Oeu023578.1' => 'oeu',
	'Oeu024242.1' => 'oeu',
	'Oeu025087.1' => 'oeu',
	'Oeu025093.1' => 'oeu',
	'Oeu025412.1' => 'oeu',
	'Oeu025520.1' => 'oeu',
	'Oeu026473.1' => 'oeu',
	'Oeu027505.1' => 'oeu',
	'Oeu027530.1' => 'oeu',
	'Oeu027794.2' => 'oeu',
	'Oeu028951.1' => 'oeu',
	'Oeu029141.1' => 'oeu',
	'Oeu029231.4' => 'oeu',
	'Oeu029388.1' => 'oeu',
	'Oeu029673.1' => 'oeu',
	'Oeu029674.1' => 'oeu',
	'Oeu029748.1' => 'oeu',
	'Oeu030224.1' => 'oeu',
	'Oeu030243.1' => 'oeu',
	'Oeu030253.1' => 'oeu',
	'Oeu030414.1' => 'oeu',
	'Oeu030415.1' => 'oeu',
	'Oeu030472.1' => 'oeu',
	'Oeu031432.1' => 'oeu',
	'Oeu031697.1' => 'oeu',
	'Oeu032030.1' => 'oeu',
	'Oeu032031.1' => 'oeu',
	'Oeu032075.1' => 'oeu',
	'Oeu032737.1' => 'oeu',
	'Oeu033407.1' => 'oeu',
	'Oeu033485.1' => 'oeu',
	'Oeu034465.1' => 'oeu',
	'Oeu034951.1' => 'oeu',
	'Oeu036281.1' => 'oeu',
	'Oeu036931.1' => 'oeu',
	'Oeu036932.1' => 'oeu',
	'Oeu037340.1' => 'oeu',
	'Oeu037611.1' => 'oeu',
	'Oeu039205.1' => 'oeu',
	'Oeu039325.1' => 'oeu',
	'Oeu040999.1' => 'oeu',
	'Oeu041244.1' => 'oeu',
	'Oeu041682.1' => 'oeu',
	'Oeu041863.1' => 'oeu',
	'Oeu042345.1' => 'oeu',
	'Oeu042346.1' => 'oeu',
	'Oeu042671.1' => 'oeu',
	'Oeu043273.1' => 'oeu',
	'Oeu043573.1' => 'oeu',
	'Oeu044071.1' => 'oeu',
	'Oeu046813.1' => 'oeu',
	'Oeu048160.1' => 'oeu',
	'Oeu048162.1' => 'oeu',
	'Oeu048282.1' => 'oeu',
	'Oeu048297.1' => 'oeu',
	'Oeu048360.1' => 'oeu',
	'Oeu048565.1' => 'oeu',
	'Oeu049268.1' => 'oeu',
	'Oeu049465.1' => 'oeu',
	'Oeu049978.1' => 'oeu',
	'Oeu050628.1' => 'oeu',
	'Oeu050727.1' => 'oeu',
	'Oeu052065.1' => 'oeu',
	'Oeu052582.1' => 'oeu',
	'Oeu053090.1' => 'oeu',
	'Oeu053644.1' => 'oeu',
	'Oeu053713.1' => 'oeu',
	'Oeu055027.1' => 'oeu',
	'Oeu057741.1' => 'oeu',
	'Oeu058973.1' => 'oeu',
	'Oeu060366.1' => 'oeu',
	'Oeu061428.1' => 'oeu',
	'Oeu062087.1' => 'oeu',
	'Oeu062537.1' => 'oeu',
	'Oeu062538.1' => 'oeu',
	'Oeu064387.1' => 'oeu',
	'PGSC0003DMG400002344' => 'stu',
	'PGSC0003DMG400004046' => 'stu',
	'PGSC0003DMG400006418' => 'stu',
	'PGSC0003DMG400008410' => 'stu',
	'PGSC0003DMG400008620' => 'stu',
	'PGSC0003DMG400009504' => 'stu',
	'PGSC0003DMG400009845' => 'stu',
	'PGSC0003DMG400011177' => 'stu',
	'PGSC0003DMG400011629' => 'stu',
	'PGSC0003DMG400013586' => 'stu',
	'PGSC0003DMG400013599' => 'stu',
	'PGSC0003DMG400014534' => 'stu',
	'PGSC0003DMG400016055' => 'stu',
	'PGSC0003DMG400016736' => 'stu',
	'PGSC0003DMG400016866' => 'stu',
	'PGSC0003DMG400017701' => 'stu',
	'PGSC0003DMG400018448' => 'stu',
	'PGSC0003DMG400020751' => 'stu',
	'PGSC0003DMG400021088' => 'stu',
	'PGSC0003DMG400021387' => 'stu',
	'PGSC0003DMG400021640' => 'stu',
	'PGSC0003DMG400021704' => 'stu',
	'PGSC0003DMG400022155' => 'stu',
	'PGSC0003DMG400023544' => 'stu',
	'PGSC0003DMG400023564' => 'stu',
	'PGSC0003DMG400028558' => 'stu',
	'PGSC0003DMG400028618' => 'stu',
	'PGSC0003DMG400029149' => 'stu',
	'PGSC0003DMG400029979' => 'stu',
	'PGSC0003DMG400030069' => 'stu',
	'PGSC0003DMG400031272' => 'stu',
	'PGSC0003DMG400034656' => 'stu',
	'PGSC0003DMG400035151' => 'stu',
	'PGSC0003DMG400035741' => 'stu',
	'PGSC0003DMG400036100' => 'stu',
	'PGSC0003DMG400037683' => 'stu',
	'PGSC0003DMG400038046' => 'stu',
	'PGSC0003DMG400040121' => 'stu',
	'PGSC0003DMG400042113' => 'stu',
	'PGSC0003DMG400042218' => 'stu',
	'PGSC0003DMG400044188' => 'stu',
	'PGSC0003DMG400044323' => 'stu',
	'PGSC0003DMG400045014' => 'stu',
	'PGSC0003DMG400045177' => 'stu',
	'PGSC0003DMG400047199' => 'stu',
	'Potri.017G071366' => 'ptr',
	'RcHm_v2.0_Chr2g0137481' => 'rch',
	'Sc20g0003180' => 'sci',
	'SEGI_00305' => 'sgi',
	'SEGI_02246' => 'sgi',
	'SEGI_03696' => 'sgi',
	'SEGI_05490' => 'sgi',
	'SEGI_05682' => 'sgi',
	'SEGI_05900' => 'sgi',
	'SEGI_06517' => 'sgi',
	'SEGI_12587' => 'sgi',
	'SEGI_13129' => 'sgi',
	'SEGI_16935' => 'sgi',
	'SEGI_18008' => 'sgi',
	'SEGI_18224' => 'sgi',
	'SEGI_20188' => 'sgi',
	'SEGI_20772' => 'sgi',
	'SEGI_20842' => 'sgi',
	'SEGI_22270' => 'sgi',
	'SEGI_22705' => 'sgi',
	'SEGI_23638' => 'sgi',
	'SEGI_23928' => 'sgi',
	'SEGI_24790' => 'sgi',
	'SEGI_28421' => 'sgi',
	'SEGI_28832' => 'sgi',
	'SEGI_29884' => 'sgi',
	'SEGI_30829' => 'sgi',
	'SEGI_35046' => 'sgi',
	'SEGI_35582' => 'sgi',
	'SEGI_37882' => 'sgi',
	'SEGI_39680' => 'sgi',
	'SEGI_40069' => 'sgi',
	'SEGI_40087' => 'sgi',
	'SEGI_41606' => 'sgi',
	'SGA_v2.0_scaffold50G18578' => 'sas',
	'SHI00293' => 'shi',
	'SHI00389' => 'shi',
	'SHI00445' => 'shi',
	'SHI01000' => 'shi',
	'SHI01503' => 'shi',
	'SHI01718' => 'shi',
	'SHI03454' => 'shi',
	'SHI03493' => 'shi',
	'SHI03494' => 'shi',
	'SHI03628' => 'shi',
	'SHI04457' => 'shi',
	'SHI04691' => 'shi',
	'SHI04829' => 'shi',
	'SHI05225' => 'shi',
	'SHI06326' => 'shi',
	'SHI06505' => 'shi',
	'SHI06770' => 'shi',
	'SHI07388' => 'shi',
	'SHI07582' => 'shi',
	'SHI07583' => 'shi',
	'SHI08271' => 'shi',
	'SHI10619' => 'shi',
	'SHI10892' => 'shi',
	'SHI10910' => 'shi',
	'SHI10911' => 'shi',
	'SHI14326' => 'shi',
	'SHI14681' => 'shi',
	'SHI15017' => 'shi',
	'SHI15096' => 'shi',
	'SHI15120' => 'shi',
	'SHI15274' => 'shi',
	'SHI16232' => 'shi',
	'SHI16811' => 'shi',
	'SHI17386' => 'shi',
	'SHI17926' => 'shi',
	'SHI18293' => 'shi',
	'SHI20489' => 'shi',
	'SHI20658' => 'shi',
	'SHI20663' => 'shi',
	'SHI21566' => 'shi',
	'SHI22547' => 'shi',
	'SHI22708' => 'shi',
	'SHI22709' => 'shi',
	'SHI22878' => 'shi',
	'SHI22879' => 'shi',
	'SHI23024' => 'shi',
	'SHI25053' => 'shi',
	'SHI25076' => 'shi',
	'SHI25116' => 'shi',
	'SHI25381' => 'shi',
	'SHI25535' => 'shi',
	'SHI25740' => 'shi',
	'SHI25991' => 'shi',
	'SHI26344' => 'shi',
	'SHI26345' => 'shi',
	'SHI27097' => 'shi',
	'SHI27140' => 'shi',
	'SHI27178' => 'shi',
	'SHI27207' => 'shi',
	'SHI27225' => 'shi',
	'SHI27734' => 'shi',
	'SHI27806' => 'shi',
	'SHI28576' => 'shi',
	'SHI29081' => 'shi',
	'SHI30038' => 'shi',
	'SHI30394' => 'shi',
	'SHI30652' => 'shi',
	'SHI32154' => 'shi',
	'SHI32205' => 'shi',
	'SHI32365' => 'shi',
	'SHI32439' => 'shi',
	'SHI32505' => 'shi',
	'SHI32626' => 'shi',
	'SHI32714' => 'shi',
	'SHI32715' => 'shi',
	'SHI32716' => 'shi',
	'SHI33118' => 'shi',
	'SHI33318' => 'shi',
	'SHI33373' => 'shi',
	'SHI33512' => 'shi',
	'SHI33625' => 'shi',
	'SHI34327' => 'shi',
	'SHI35604' => 'shi',
	'SHI36119' => 'shi',
	'SHI36120' => 'shi',
	'SHI44959' => 'shi',
	'SHI46406' => 'shi',
	'SHI48191' => 'shi',
	'SHI48192' => 'shi',
	'Solyc10g150111.1' => 'sly',
	'Solyc12g062340.2' => 'sly',
	'Sopen00g001750' => 'spe',
	'Sopen00g001820' => 'spe',
	'Sopen00g001830' => 'spe',
	'Sopen00g001890' => 'spe',
	'Sopen00g002240' => 'spe',
	'Sopen00g003950' => 'spe',
	'Sopen00g004130' => 'spe',
	'Sopen00g004810' => 'spe',
	'Sopen00g005120' => 'spe',
	'Sopen00g005190' => 'spe',
	'Sopen00g007000' => 'spe',
	'Sopen00g007210' => 'spe',
	'Sopen00g012840' => 'spe',
	'Sopen00g013060' => 'spe',
	'Sopen00g013610' => 'spe',
	'Sopen00g013630' => 'spe',
	'Sopen01g004610' => 'spe',
	'Sopen01g007660' => 'spe',
	'Sopen01g007750' => 'spe',
	'Sopen01g007760' => 'spe',
	'Sopen01g007770' => 'spe',
	'Sopen01g007860' => 'spe',
	'Sopen01g009130' => 'spe',
	'Sopen01g009820' => 'spe',
	'Sopen01g011240' => 'spe',
	'Sopen01g012740' => 'spe',
	'Sopen01g013840' => 'spe',
	'Sopen01g013850' => 'spe',
	'Sopen01g016140' => 'spe',
	'Sopen01g016150' => 'spe',
	'Sopen01g016830' => 'spe',
	'Sopen01g017260' => 'spe',
	'Sopen01g019000' => 'spe',
	'Sopen01g019690' => 'spe',
	'Sopen01g022160' => 'spe',
	'Sopen01g024000' => 'spe',
	'Sopen01g024670' => 'spe',
	'Sopen01g024770' => 'spe',
	'Sopen01g024900' => 'spe',
	'Sopen01g025130' => 'spe',
	'Sopen01g026370' => 'spe',
	'Sopen01g041640' => 'spe',
	'Sopen01g046930' => 'spe',
	'Sopen02g001360' => 'spe',
	'Sopen02g002010' => 'spe',
	'Sopen02g003600' => 'spe',
	'Sopen02g003730' => 'spe',
	'Sopen02g005430' => 'spe',
	'Sopen02g005510' => 'spe',
	'Sopen02g006840' => 'spe',
	'Sopen02g007390' => 'spe',
	'Sopen02g007420' => 'spe',
	'Sopen02g007540' => 'spe',
	'Sopen02g007920' => 'spe',
	'Sopen02g008960' => 'spe',
	'Sopen02g009450' => 'spe',
	'Sopen02g009460' => 'spe',
	'Sopen02g011320' => 'spe',
	'Sopen02g012680' => 'spe',
	'Sopen02g018090' => 'spe',
	'Sopen02g022140' => 'spe',
	'Sopen03g010330' => 'spe',
	'Sopen03g013130' => 'spe',
	'Sopen03g013180' => 'spe',
	'Sopen03g013230' => 'spe',
	'Sopen03g014110' => 'spe',
	'Sopen03g015260' => 'spe',
	'Sopen03g015790' => 'spe',
	'Sopen03g018360' => 'spe',
	'Sopen03g024470' => 'spe',
	'Sopen03g026800' => 'spe',
	'Sopen04g003180' => 'spe',
	'Sopen04g008260' => 'spe',
	'Sopen04g010320' => 'spe',
	'Sopen04g011020' => 'spe',
	'Sopen04g011200' => 'spe',
	'Sopen04g011280' => 'spe',
	'Sopen04g021910' => 'spe',
	'Sopen04g023870' => 'spe',
	'Sopen05g009880' => 'spe',
	'Sopen05g011580' => 'spe',
	'Sopen05g012230' => 'spe',
	'Sopen05g012500' => 'spe',
	'Sopen05g012560' => 'spe',
	'Sopen05g012570' => 'spe',
	'Sopen05g012760' => 'spe',
	'Sopen05g013710' => 'spe',
	'Sopen05g015050' => 'spe',
	'Sopen05g026090' => 'spe',
	'Sopen05g028020' => 'spe',
	'Sopen05g028610' => 'spe',
	'Sopen05g029300' => 'spe',
	'Sopen06g005520' => 'spe',
	'Sopen06g006750' => 'spe',
	'Sopen06g008160' => 'spe',
	'Sopen06g009120' => 'spe',
	'Sopen06g013550' => 'spe',
	'Sopen06g015340' => 'spe',
	'Sopen06g018330' => 'spe',
	'Sopen06g021630' => 'spe',
	'Sopen06g021650' => 'spe',
	'Sopen07g006730' => 'spe',
	'Sopen07g008690' => 'spe',
	'Sopen07g008700' => 'spe',
	'Sopen07g008720' => 'spe',
	'Sopen07g008870' => 'spe',
	'Sopen07g009400' => 'spe',
	'Sopen07g009410' => 'spe',
	'Sopen07g009470' => 'spe',
	'Sopen07g009540' => 'spe',
	'Sopen07g011060' => 'spe',
	'Sopen07g011110' => 'spe',
	'Sopen07g011820' => 'spe',
	'Sopen07g013260' => 'spe',
	'Sopen07g014740' => 'spe',
	'Sopen07g015160' => 'spe',
	'Sopen07g015230' => 'spe',
	'Sopen07g016240' => 'spe',
	'Sopen07g017200' => 'spe',
	'Sopen07g017810' => 'spe',
	'Sopen07g019030' => 'spe',
	'Sopen07g020430' => 'spe',
	'Sopen07g021010' => 'spe',
	'Sopen07g021340' => 'spe',
	'Sopen07g022950' => 'spe',
	'Sopen07g027860' => 'spe',
	'Sopen08g007820' => 'spe',
	'Sopen08g009330' => 'spe',
	'Sopen08g012310' => 'spe',
	'Sopen08g012560' => 'spe',
	'Sopen08g014040' => 'spe',
	'Sopen08g014650' => 'spe',
	'Sopen08g017020' => 'spe',
	'Sopen08g018300' => 'spe',
	'Sopen08g020530' => 'spe',
	'Sopen09g008590' => 'spe',
	'Sopen09g008780' => 'spe',
	'Sopen09g011540' => 'spe',
	'Sopen09g011920' => 'spe',
	'Sopen09g014170' => 'spe',
	'Sopen09g016520' => 'spe',
	'Sopen09g021030' => 'spe',
	'Sopen09g023110' => 'spe',
	'Sopen09g024750' => 'spe',
	'Sopen09g025230' => 'spe',
	'Sopen09g025600' => 'spe',
	'Sopen09g034660' => 'spe',
	'Sopen10g006700' => 'spe',
	'Sopen10g009130' => 'spe',
	'Sopen10g009140' => 'spe',
	'Sopen10g009560' => 'spe',
	'Sopen10g010340' => 'spe',
	'Sopen10g011040' => 'spe',
	'Sopen10g013650' => 'spe',
	'Sopen10g014130' => 'spe',
	'Sopen10g014140' => 'spe',
	'Sopen10g014760' => 'spe',
	'Sopen10g015080' => 'spe',
	'Sopen10g015830' => 'spe',
	'Sopen10g018240' => 'spe',
	'Sopen10g018300' => 'spe',
	'Sopen10g018350' => 'spe',
	'Sopen10g018460' => 'spe',
	'Sopen10g018670' => 'spe',
	'Sopen10g019040' => 'spe',
	'Sopen10g019330' => 'spe',
	'Sopen10g019340' => 'spe',
	'Sopen10g019360' => 'spe',
	'Sopen10g019370' => 'spe',
	'Sopen10g020620' => 'spe',
	'Sopen10g021550' => 'spe',
	'Sopen10g022160' => 'spe',
	'Sopen10g023540' => 'spe',
	'Sopen10g023570' => 'spe',
	'Sopen10g023580' => 'spe',
	'Sopen10g023600' => 'spe',
	'Sopen10g023620' => 'spe',
	'Sopen10g023650' => 'spe',
	'Sopen10g024800' => 'spe',
	'Sopen10g026170' => 'spe',
	'Sopen11g007790' => 'spe',
	'Sopen11g010170' => 'spe',
	'Sopen11g010580' => 'spe',
	'Sopen11g013420' => 'spe',
	'Sopen11g016330' => 'spe',
	'Sopen11g017010' => 'spe',
	'Sopen11g018110' => 'spe',
	'Sopen11g018960' => 'spe',
	'Sopen11g019000' => 'spe',
	'Sopen11g019970' => 'spe',
	'Sopen11g020340' => 'spe',
	'Sopen11g020970' => 'spe',
	'Sopen12g008510' => 'spe',
	'Sopen12g008910' => 'spe',
	'Sopen12g009010' => 'spe',
	'Sopen12g009120' => 'spe',
	'Sopen12g009340' => 'spe',
	'Sopen12g009580' => 'spe',
	'Sopen12g010190' => 'spe',
	'Sopen12g010320' => 'spe',
	'Sopen12g010370' => 'spe',
	'Sopen12g012140' => 'spe',
	'Sopen12g012700' => 'spe',
	'Sopen12g013490' => 'spe',
	'Sopen12g014290' => 'spe',
	'Sopen12g015060' => 'spe',
	'Sopen12g015610' => 'spe',
	'Sopen12g018380' => 'spe',
	'Sopen12g019150' => 'spe',
	'Sopen12g020560' => 'spe',
	'Sopen12g023320' => 'spe',
	'Sp3g24190' => 'spa',
	'Sp4g07270' => 'spa',
	'Sp4g07530' => 'spa',
	'Sp4g07670' => 'spa',
	'Sp6g09360' => 'spa',
	'Sp7g04180' => 'spa',
	'Sp7g04980' => 'spa',
	'Sp7g08200' => 'spa',
	'Sp7g09660' => 'spa',
	'SpUn0081_0010' => 'spa',
	'THA.LOC104803417' => 'tha',
	'THA.LOC104817059' => 'tha',
	'Thecc.01G188700' => 'tca',
	'Thecc.05G106700' => 'tca',
	'Thecc.06G068800' => 'tca',
	'Thecc.07G189100' => 'tca',
	'Thecc.09G172800' => 'tca',
	'Thhalv10023044m.g' => 'esa',
	'Thhalv10023881m.g' => 'esa',
	'Thhalv10024067m.g' => 'esa'
)
$gf_id = 'HOM05D000691'
$gf_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$gf_types_configuration = array(
	'HOMFAM' => array(
		'order' => '1',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	),
	'ORTHOFAM' => array(
		'order' => '2',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	)
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$allow_async_use = true
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D000691'
)
$data_identifier = 'HOM05D000691'
$data_type = 'gf_id'
$species_gene_counts = array(
	'amhyb' => (int) 18,
	'aly' => (int) 1,
	'atr' => (int) 21,
	'acertr' => (int) 1,
	'cqu' => (int) 90,
	'bol' => (int) 1,
	'can' => (int) 7,
	'cil' => (int) 3,
	'cla' => (int) 15,
	'col' => (int) 1,
	'cpa' => (int) 2,
	'csa' => (int) 7,
	'camsi' => (int) 10,
	'din' => (int) 1,
	'dzi' => (int) 2,
	'bvu' => (int) 18,
	'fve' => (int) 22,
	'gra' => (int) 1,
	'han' => (int) 7,
	'hma' => (int) 9,
	'sun' => (int) 16,
	'lonja' => (int) 46,
	'mes' => (int) 8,
	'mbi' => (int) 2,
	'cme' => (int) 6,
	'oeu' => (int) 110,
	'stu' => (int) 45,
	'ptr' => (int) 1,
	'rch' => (int) 1,
	'sci' => (int) 1,
	'sgi' => (int) 31,
	'sas' => (int) 1,
	'shi' => (int) 89,
	'sly' => (int) 2,
	'spe' => (int) 211,
	'spa' => (int) 10,
	'tha' => (int) 2,
	'tca' => (int) 5,
	'esa' => (int) 3
)
$gf_gene_species = 'esa'
$gf_gene_id = 'Thhalv10024067m.g'
$species_info = array(
	'species' => 'bvu',
	'common_name' => 'Beta vulgaris',
	'tax_id' => '161934',
	'version' => 'EL10_1.0'
)
$local_species = 'bvu'
$disabled = ''
$selected = ''
$num_hits = (int) 0
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Analysis/custom_tree_creation.ctp, line 27
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933

Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]
Code Context
        $disabled    = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";

        $selected    = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";

        $num_hits    = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D000691',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '827',
		'num_species' => '39'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'gf_genes' => array(
		'Ah.01g012340' => 'amhyb',
		'Ah.01g013530' => 'amhyb',
		'Ah.03g143080' => 'amhyb',
		'Ah.06g186750' => 'amhyb',
		'Ah.06g186800' => 'amhyb',
		'Ah.07g200050' => 'amhyb',
		'Ah.08g209110' => 'amhyb',
		'Ah.09g229600' => 'amhyb',
		'Ah.09g229610' => 'amhyb',
		'Ah.10g026490' => 'amhyb',
		'Ah.12g065350' => 'amhyb',
		'Ah.13g069310' => 'amhyb',
		'Ah.14g080130' => 'amhyb',
		'Ah.14g081130' => 'amhyb',
		'Ah.14g081140' => 'amhyb',
		'Ah.16g109160' => 'amhyb',
		'Ah.16g109170' => 'amhyb',
		'Ah.16g109370' => 'amhyb',
		'AL3G47720' => 'aly',
		'ATR0012G060' => 'atr',
		'ATR0026G029' => 'atr',
		'ATR0193G043' => 'atr',
		'ATR0561G076' => 'atr',
		'ATR0561G181' => 'atr',
		'ATR0568G014' => 'atr',
		'ATR0568G114' => 'atr',
		'ATR0620G039' => 'atr',
		'ATR0629G125' => 'atr',
		'ATR0661G583' => 'atr',
		'ATR0686G019' => 'atr',
		'ATR0693G232' => 'atr',
		'ATR0697G104' => 'atr',
		'ATR0789G146' => 'atr',
		'ATR0794G066' => 'atr',
		'ATR1127G127' => 'atr',
		'ATR1131G040' => 'atr',
		'ATR1134G004' => 'atr',
		'ATR1134G095' => 'atr',
		'ATR1152G110' => 'atr',
		'ATR1153G065' => 'atr',
		'Atru.chr3.2296' => 'acertr',
		'AUR62000692' => 'cqu',
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		'AUR62005160' => 'cqu',
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		'ClCG10G006760' => 'cla',
		'ClCG11G007310' => 'cla',
		'COL.COLO4_16141' => 'col',
		'Cpa.g.sc202.2' => 'cpa',
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		'CsaV3_7G021240' => 'csa',
		'CsaV3_UNG240600' => 'csa',
		'CSS0003516' => 'camsi',
		'CSS0013023' => 'camsi',
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		'CSS0018551' => 'camsi',
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		'FvH4_7g04123' => 'fve',
		'FvH4_c7g00010' => 'fve',
		'Gorai.012G165300' => 'gra',
		'HanXRQChr00c0452g0574871' => 'han',
		'HanXRQChr01g0029471' => 'han',
		'HanXRQChr05g0133501' => 'han',
		'HanXRQChr10g0280141' => 'han',
		'HanXRQChr10g0280631' => 'han',
		'HanXRQChr13g0409991' => 'han',
		'HanXRQChr15g0468361' => 'han',
		'Hma1.2p1_0021F.1_g014270' => 'hma',
		'Hma1.2p1_0026F.1_g016730' => 'hma',
		'Hma1.2p1_0177F.1_g077930' => 'hma',
		'Hma1.2p1_0370F.1_g137540' => 'hma',
		'Hma1.2p1_0637F.1_g193600' => 'hma',
		'Hma1.2p1_1045F.1_g251360' => 'hma',
		'Hma1.2p1_1168F.1_g263120' => 'hma',
		'Hma1.2p1_1640F.1_g295040' => 'hma',
		'Hma1.2p1_2467F.1_g322660' => 'hma',
		'Hund01785' => 'sun',
		'Hund04739' => 'sun',
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		'Hund26399' => 'sun',
		'Hund28766' => 'sun',
		'Hund28768' => 'sun',
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		'Lj3C273T2' => 'lonja',
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		'Lju2092C1T0' => 'lonja',
		'Lju225C6G6' => 'lonja',
		'Lju427C2T0' => 'lonja',
		'Lju50C9T4' => 'lonja',
		'Lju926C12T2' => 'lonja',
		'Manes.06G126602' => 'mes',
		'Manes.13G002614' => 'mes',
		'Manes.15G192966' => 'mes',
		'Manes.17G001483' => 'mes',
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		'Manes.18G042825' => 'mes',
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		'MBI02_g15234_MAGBIO' => 'mbi',
		'MBI16_g35584_MAGBIO' => 'mbi',
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		'MELO3C010395.2' => 'cme',
		'MELO3C010396.2' => 'cme',
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		'Oeu050727.1' => 'oeu',
		'Oeu052065.1' => 'oeu',
		'Oeu052582.1' => 'oeu',
		'Oeu053090.1' => 'oeu',
		'Oeu053644.1' => 'oeu',
		'Oeu053713.1' => 'oeu',
		'Oeu055027.1' => 'oeu',
		'Oeu057741.1' => 'oeu',
		'Oeu058973.1' => 'oeu',
		'Oeu060366.1' => 'oeu',
		'Oeu061428.1' => 'oeu',
		'Oeu062087.1' => 'oeu',
		'Oeu062537.1' => 'oeu',
		'Oeu062538.1' => 'oeu',
		'Oeu064387.1' => 'oeu',
		'PGSC0003DMG400002344' => 'stu',
		'PGSC0003DMG400004046' => 'stu',
		'PGSC0003DMG400006418' => 'stu',
		'PGSC0003DMG400008410' => 'stu',
		'PGSC0003DMG400008620' => 'stu',
		'PGSC0003DMG400009504' => 'stu',
		'PGSC0003DMG400009845' => 'stu',
		'PGSC0003DMG400011177' => 'stu',
		'PGSC0003DMG400011629' => 'stu',
		'PGSC0003DMG400013586' => 'stu',
		'PGSC0003DMG400013599' => 'stu',
		'PGSC0003DMG400014534' => 'stu',
		'PGSC0003DMG400016055' => 'stu',
		'PGSC0003DMG400016736' => 'stu',
		'PGSC0003DMG400016866' => 'stu',
		'PGSC0003DMG400017701' => 'stu',
		'PGSC0003DMG400018448' => 'stu',
		'PGSC0003DMG400020751' => 'stu',
		'PGSC0003DMG400021088' => 'stu',
		'PGSC0003DMG400021387' => 'stu',
		'PGSC0003DMG400021640' => 'stu',
		'PGSC0003DMG400021704' => 'stu',
		'PGSC0003DMG400022155' => 'stu',
		'PGSC0003DMG400023544' => 'stu',
		'PGSC0003DMG400023564' => 'stu',
		'PGSC0003DMG400028558' => 'stu',
		'PGSC0003DMG400028618' => 'stu',
		'PGSC0003DMG400029149' => 'stu',
		'PGSC0003DMG400029979' => 'stu',
		'PGSC0003DMG400030069' => 'stu',
		'PGSC0003DMG400031272' => 'stu',
		'PGSC0003DMG400034656' => 'stu',
		'PGSC0003DMG400035151' => 'stu',
		'PGSC0003DMG400035741' => 'stu',
		'PGSC0003DMG400036100' => 'stu',
		'PGSC0003DMG400037683' => 'stu',
		'PGSC0003DMG400038046' => 'stu',
		'PGSC0003DMG400040121' => 'stu',
		'PGSC0003DMG400042113' => 'stu',
		'PGSC0003DMG400042218' => 'stu',
		'PGSC0003DMG400044188' => 'stu',
		'PGSC0003DMG400044323' => 'stu',
		'PGSC0003DMG400045014' => 'stu',
		'PGSC0003DMG400045177' => 'stu',
		'PGSC0003DMG400047199' => 'stu',
		'Potri.017G071366' => 'ptr',
		'RcHm_v2.0_Chr2g0137481' => 'rch',
		'Sc20g0003180' => 'sci',
		'SEGI_00305' => 'sgi',
		'SEGI_02246' => 'sgi',
		'SEGI_03696' => 'sgi',
		'SEGI_05490' => 'sgi',
		'SEGI_05682' => 'sgi',
		'SEGI_05900' => 'sgi',
		'SEGI_06517' => 'sgi',
		'SEGI_12587' => 'sgi',
		'SEGI_13129' => 'sgi',
		'SEGI_16935' => 'sgi',
		'SEGI_18008' => 'sgi',
		'SEGI_18224' => 'sgi',
		'SEGI_20188' => 'sgi',
		'SEGI_20772' => 'sgi',
		'SEGI_20842' => 'sgi',
		'SEGI_22270' => 'sgi',
		'SEGI_22705' => 'sgi',
		'SEGI_23638' => 'sgi',
		'SEGI_23928' => 'sgi',
		'SEGI_24790' => 'sgi',
		'SEGI_28421' => 'sgi',
		'SEGI_28832' => 'sgi',
		'SEGI_29884' => 'sgi',
		'SEGI_30829' => 'sgi',
		'SEGI_35046' => 'sgi',
		'SEGI_35582' => 'sgi',
		'SEGI_37882' => 'sgi',
		'SEGI_39680' => 'sgi',
		'SEGI_40069' => 'sgi',
		'SEGI_40087' => 'sgi',
		'SEGI_41606' => 'sgi',
		'SGA_v2.0_scaffold50G18578' => 'sas',
		'SHI00293' => 'shi',
		'SHI00389' => 'shi',
		'SHI00445' => 'shi',
		'SHI01000' => 'shi',
		'SHI01503' => 'shi',
		'SHI01718' => 'shi',
		'SHI03454' => 'shi',
		'SHI03493' => 'shi',
		'SHI03494' => 'shi',
		'SHI03628' => 'shi',
		'SHI04457' => 'shi',
		'SHI04691' => 'shi',
		'SHI04829' => 'shi',
		'SHI05225' => 'shi',
		'SHI06326' => 'shi',
		'SHI06505' => 'shi',
		'SHI06770' => 'shi',
		'SHI07388' => 'shi',
		'SHI07582' => 'shi',
		'SHI07583' => 'shi',
		'SHI08271' => 'shi',
		'SHI10619' => 'shi',
		'SHI10892' => 'shi',
		'SHI10910' => 'shi',
		'SHI10911' => 'shi',
		'SHI14326' => 'shi',
		'SHI14681' => 'shi',
		'SHI15017' => 'shi',
		'SHI15096' => 'shi',
		'SHI15120' => 'shi',
		'SHI15274' => 'shi',
		'SHI16232' => 'shi',
		'SHI16811' => 'shi',
		'SHI17386' => 'shi',
		'SHI17926' => 'shi',
		'SHI18293' => 'shi',
		'SHI20489' => 'shi',
		'SHI20658' => 'shi',
		'SHI20663' => 'shi',
		'SHI21566' => 'shi',
		'SHI22547' => 'shi',
		'SHI22708' => 'shi',
		'SHI22709' => 'shi',
		'SHI22878' => 'shi',
		'SHI22879' => 'shi',
		'SHI23024' => 'shi',
		'SHI25053' => 'shi',
		'SHI25076' => 'shi',
		'SHI25116' => 'shi',
		'SHI25381' => 'shi',
		'SHI25535' => 'shi',
		'SHI25740' => 'shi',
		'SHI25991' => 'shi',
		'SHI26344' => 'shi',
		'SHI26345' => 'shi',
		'SHI27097' => 'shi',
		'SHI27140' => 'shi',
		'SHI27178' => 'shi',
		'SHI27207' => 'shi',
		'SHI27225' => 'shi',
		'SHI27734' => 'shi',
		'SHI27806' => 'shi',
		'SHI28576' => 'shi',
		'SHI29081' => 'shi',
		'SHI30038' => 'shi',
		'SHI30394' => 'shi',
		'SHI30652' => 'shi',
		'SHI32154' => 'shi',
		'SHI32205' => 'shi',
		'SHI32365' => 'shi',
		'SHI32439' => 'shi',
		'SHI32505' => 'shi',
		'SHI32626' => 'shi',
		'SHI32714' => 'shi',
		'SHI32715' => 'shi',
		'SHI32716' => 'shi',
		'SHI33118' => 'shi',
		'SHI33318' => 'shi',
		'SHI33373' => 'shi',
		'SHI33512' => 'shi',
		'SHI33625' => 'shi',
		'SHI34327' => 'shi',
		'SHI35604' => 'shi',
		'SHI36119' => 'shi',
		'SHI36120' => 'shi',
		'SHI44959' => 'shi',
		'SHI46406' => 'shi',
		'SHI48191' => 'shi',
		'SHI48192' => 'shi',
		'Solyc10g150111.1' => 'sly',
		'Solyc12g062340.2' => 'sly',
		'Sopen00g001750' => 'spe',
		'Sopen00g001820' => 'spe',
		'Sopen00g001830' => 'spe',
		'Sopen00g001890' => 'spe',
		'Sopen00g002240' => 'spe',
		'Sopen00g003950' => 'spe',
		'Sopen00g004130' => 'spe',
		'Sopen00g004810' => 'spe',
		'Sopen00g005120' => 'spe',
		'Sopen00g005190' => 'spe',
		'Sopen00g007000' => 'spe',
		'Sopen00g007210' => 'spe',
		'Sopen00g012840' => 'spe',
		'Sopen00g013060' => 'spe',
		'Sopen00g013610' => 'spe',
		'Sopen00g013630' => 'spe',
		'Sopen01g004610' => 'spe',
		'Sopen01g007660' => 'spe',
		'Sopen01g007750' => 'spe',
		'Sopen01g007760' => 'spe',
		'Sopen01g007770' => 'spe',
		'Sopen01g007860' => 'spe',
		'Sopen01g009130' => 'spe',
		'Sopen01g009820' => 'spe',
		'Sopen01g011240' => 'spe',
		'Sopen01g012740' => 'spe',
		'Sopen01g013840' => 'spe',
		'Sopen01g013850' => 'spe',
		'Sopen01g016140' => 'spe',
		'Sopen01g016150' => 'spe',
		'Sopen01g016830' => 'spe',
		'Sopen01g017260' => 'spe',
		'Sopen01g019000' => 'spe',
		'Sopen01g019690' => 'spe',
		'Sopen01g022160' => 'spe',
		'Sopen01g024000' => 'spe',
		'Sopen01g024670' => 'spe',
		'Sopen01g024770' => 'spe',
		'Sopen01g024900' => 'spe',
		'Sopen01g025130' => 'spe',
		'Sopen01g026370' => 'spe',
		'Sopen01g041640' => 'spe',
		'Sopen01g046930' => 'spe',
		'Sopen02g001360' => 'spe',
		'Sopen02g002010' => 'spe',
		'Sopen02g003600' => 'spe',
		'Sopen02g003730' => 'spe',
		'Sopen02g005430' => 'spe',
		'Sopen02g005510' => 'spe',
		'Sopen02g006840' => 'spe',
		'Sopen02g007390' => 'spe',
		'Sopen02g007420' => 'spe',
		'Sopen02g007540' => 'spe',
		'Sopen02g007920' => 'spe',
		'Sopen02g008960' => 'spe',
		'Sopen02g009450' => 'spe',
		'Sopen02g009460' => 'spe',
		'Sopen02g011320' => 'spe',
		'Sopen02g012680' => 'spe',
		'Sopen02g018090' => 'spe',
		'Sopen02g022140' => 'spe',
		'Sopen03g010330' => 'spe',
		'Sopen03g013130' => 'spe',
		'Sopen03g013180' => 'spe',
		'Sopen03g013230' => 'spe',
		'Sopen03g014110' => 'spe',
		'Sopen03g015260' => 'spe',
		'Sopen03g015790' => 'spe',
		'Sopen03g018360' => 'spe',
		'Sopen03g024470' => 'spe',
		'Sopen03g026800' => 'spe',
		'Sopen04g003180' => 'spe',
		'Sopen04g008260' => 'spe',
		'Sopen04g010320' => 'spe',
		'Sopen04g011020' => 'spe',
		'Sopen04g011200' => 'spe',
		'Sopen04g011280' => 'spe',
		'Sopen04g021910' => 'spe',
		'Sopen04g023870' => 'spe',
		'Sopen05g009880' => 'spe',
		'Sopen05g011580' => 'spe',
		'Sopen05g012230' => 'spe',
		'Sopen05g012500' => 'spe',
		'Sopen05g012560' => 'spe',
		'Sopen05g012570' => 'spe',
		'Sopen05g012760' => 'spe',
		'Sopen05g013710' => 'spe',
		'Sopen05g015050' => 'spe',
		'Sopen05g026090' => 'spe',
		'Sopen05g028020' => 'spe',
		'Sopen05g028610' => 'spe',
		'Sopen05g029300' => 'spe',
		'Sopen06g005520' => 'spe',
		'Sopen06g006750' => 'spe',
		'Sopen06g008160' => 'spe',
		'Sopen06g009120' => 'spe',
		'Sopen06g013550' => 'spe',
		'Sopen06g015340' => 'spe',
		'Sopen06g018330' => 'spe',
		'Sopen06g021630' => 'spe',
		'Sopen06g021650' => 'spe',
		'Sopen07g006730' => 'spe',
		'Sopen07g008690' => 'spe',
		'Sopen07g008700' => 'spe',
		'Sopen07g008720' => 'spe',
		'Sopen07g008870' => 'spe',
		'Sopen07g009400' => 'spe',
		'Sopen07g009410' => 'spe',
		'Sopen07g009470' => 'spe',
		'Sopen07g009540' => 'spe',
		'Sopen07g011060' => 'spe',
		'Sopen07g011110' => 'spe',
		'Sopen07g011820' => 'spe',
		'Sopen07g013260' => 'spe',
		'Sopen07g014740' => 'spe',
		'Sopen07g015160' => 'spe',
		'Sopen07g015230' => 'spe',
		'Sopen07g016240' => 'spe',
		'Sopen07g017200' => 'spe',
		'Sopen07g017810' => 'spe',
		'Sopen07g019030' => 'spe',
		'Sopen07g020430' => 'spe',
		'Sopen07g021010' => 'spe',
		'Sopen07g021340' => 'spe',
		'Sopen07g022950' => 'spe',
		'Sopen07g027860' => 'spe',
		'Sopen08g007820' => 'spe',
		'Sopen08g009330' => 'spe',
		'Sopen08g012310' => 'spe',
		'Sopen08g012560' => 'spe',
		'Sopen08g014040' => 'spe',
		'Sopen08g014650' => 'spe',
		'Sopen08g017020' => 'spe',
		'Sopen08g018300' => 'spe',
		'Sopen08g020530' => 'spe',
		'Sopen09g008590' => 'spe',
		'Sopen09g008780' => 'spe',
		'Sopen09g011540' => 'spe',
		'Sopen09g011920' => 'spe',
		'Sopen09g014170' => 'spe',
		'Sopen09g016520' => 'spe',
		'Sopen09g021030' => 'spe',
		'Sopen09g023110' => 'spe',
		'Sopen09g024750' => 'spe',
		'Sopen09g025230' => 'spe',
		'Sopen09g025600' => 'spe',
		'Sopen09g034660' => 'spe',
		'Sopen10g006700' => 'spe',
		'Sopen10g009130' => 'spe',
		'Sopen10g009140' => 'spe',
		'Sopen10g009560' => 'spe',
		'Sopen10g010340' => 'spe',
		'Sopen10g011040' => 'spe',
		'Sopen10g013650' => 'spe',
		'Sopen10g014130' => 'spe',
		'Sopen10g014140' => 'spe',
		'Sopen10g014760' => 'spe',
		'Sopen10g015080' => 'spe',
		'Sopen10g015830' => 'spe',
		'Sopen10g018240' => 'spe',
		'Sopen10g018300' => 'spe',
		'Sopen10g018350' => 'spe',
		'Sopen10g018460' => 'spe',
		'Sopen10g018670' => 'spe',
		'Sopen10g019040' => 'spe',
		'Sopen10g019330' => 'spe',
		'Sopen10g019340' => 'spe',
		'Sopen10g019360' => 'spe',
		'Sopen10g019370' => 'spe',
		'Sopen10g020620' => 'spe',
		'Sopen10g021550' => 'spe',
		'Sopen10g022160' => 'spe',
		'Sopen10g023540' => 'spe',
		'Sopen10g023570' => 'spe',
		'Sopen10g023580' => 'spe',
		'Sopen10g023600' => 'spe',
		'Sopen10g023620' => 'spe',
		'Sopen10g023650' => 'spe',
		'Sopen10g024800' => 'spe',
		'Sopen10g026170' => 'spe',
		'Sopen11g007790' => 'spe',
		'Sopen11g010170' => 'spe',
		'Sopen11g010580' => 'spe',
		'Sopen11g013420' => 'spe',
		'Sopen11g016330' => 'spe',
		'Sopen11g017010' => 'spe',
		'Sopen11g018110' => 'spe',
		'Sopen11g018960' => 'spe',
		'Sopen11g019000' => 'spe',
		'Sopen11g019970' => 'spe',
		'Sopen11g020340' => 'spe',
		'Sopen11g020970' => 'spe',
		'Sopen12g008510' => 'spe',
		'Sopen12g008910' => 'spe',
		'Sopen12g009010' => 'spe',
		'Sopen12g009120' => 'spe',
		'Sopen12g009340' => 'spe',
		'Sopen12g009580' => 'spe',
		'Sopen12g010190' => 'spe',
		'Sopen12g010320' => 'spe',
		'Sopen12g010370' => 'spe',
		'Sopen12g012140' => 'spe',
		'Sopen12g012700' => 'spe',
		'Sopen12g013490' => 'spe',
		'Sopen12g014290' => 'spe',
		'Sopen12g015060' => 'spe',
		'Sopen12g015610' => 'spe',
		'Sopen12g018380' => 'spe',
		'Sopen12g019150' => 'spe',
		'Sopen12g020560' => 'spe',
		'Sopen12g023320' => 'spe',
		'Sp3g24190' => 'spa',
		'Sp4g07270' => 'spa',
		'Sp4g07530' => 'spa',
		'Sp4g07670' => 'spa',
		'Sp6g09360' => 'spa',
		'Sp7g04180' => 'spa',
		'Sp7g04980' => 'spa',
		'Sp7g08200' => 'spa',
		'Sp7g09660' => 'spa',
		'SpUn0081_0010' => 'spa',
		'THA.LOC104803417' => 'tha',
		'THA.LOC104817059' => 'tha',
		'Thecc.01G188700' => 'tca',
		'Thecc.05G106700' => 'tca',
		'Thecc.06G068800' => 'tca',
		'Thecc.07G189100' => 'tca',
		'Thecc.09G172800' => 'tca',
		'Thhalv10023044m.g' => 'esa',
		'Thhalv10023881m.g' => 'esa',
		'Thhalv10024067m.g' => 'esa'
	),
	'gf_id' => 'HOM05D000691',
	'gf_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'gf_types_configuration' => array(
		'HOMFAM' => array(
			'order' => '1',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		),
		'ORTHOFAM' => array(
			'order' => '2',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		)
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'allow_async_use' => true,
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D000691'
	),
	'data_identifier' => 'HOM05D000691',
	'data_type' => 'gf_id'
)
$sidebar_info = array(
	'gf_id' => 'HOM05D000691',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '827',
	'num_species' => '39'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$gf_genes = array(
	'Ah.01g012340' => 'amhyb',
	'Ah.01g013530' => 'amhyb',
	'Ah.03g143080' => 'amhyb',
	'Ah.06g186750' => 'amhyb',
	'Ah.06g186800' => 'amhyb',
	'Ah.07g200050' => 'amhyb',
	'Ah.08g209110' => 'amhyb',
	'Ah.09g229600' => 'amhyb',
	'Ah.09g229610' => 'amhyb',
	'Ah.10g026490' => 'amhyb',
	'Ah.12g065350' => 'amhyb',
	'Ah.13g069310' => 'amhyb',
	'Ah.14g080130' => 'amhyb',
	'Ah.14g081130' => 'amhyb',
	'Ah.14g081140' => 'amhyb',
	'Ah.16g109160' => 'amhyb',
	'Ah.16g109170' => 'amhyb',
	'Ah.16g109370' => 'amhyb',
	'AL3G47720' => 'aly',
	'ATR0012G060' => 'atr',
	'ATR0026G029' => 'atr',
	'ATR0193G043' => 'atr',
	'ATR0561G076' => 'atr',
	'ATR0561G181' => 'atr',
	'ATR0568G014' => 'atr',
	'ATR0568G114' => 'atr',
	'ATR0620G039' => 'atr',
	'ATR0629G125' => 'atr',
	'ATR0661G583' => 'atr',
	'ATR0686G019' => 'atr',
	'ATR0693G232' => 'atr',
	'ATR0697G104' => 'atr',
	'ATR0789G146' => 'atr',
	'ATR0794G066' => 'atr',
	'ATR1127G127' => 'atr',
	'ATR1131G040' => 'atr',
	'ATR1134G004' => 'atr',
	'ATR1134G095' => 'atr',
	'ATR1152G110' => 'atr',
	'ATR1153G065' => 'atr',
	'Atru.chr3.2296' => 'acertr',
	'AUR62000692' => 'cqu',
	'AUR62001473' => 'cqu',
	'AUR62001812' => 'cqu',
	'AUR62002706' => 'cqu',
	'AUR62003904' => 'cqu',
	'AUR62003905' => 'cqu',
	'AUR62004840' => 'cqu',
	'AUR62005160' => 'cqu',
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	'SHI22878' => 'shi',
	'SHI22879' => 'shi',
	'SHI23024' => 'shi',
	'SHI25053' => 'shi',
	'SHI25076' => 'shi',
	'SHI25116' => 'shi',
	'SHI25381' => 'shi',
	'SHI25535' => 'shi',
	'SHI25740' => 'shi',
	'SHI25991' => 'shi',
	'SHI26344' => 'shi',
	'SHI26345' => 'shi',
	'SHI27097' => 'shi',
	'SHI27140' => 'shi',
	'SHI27178' => 'shi',
	'SHI27207' => 'shi',
	'SHI27225' => 'shi',
	'SHI27734' => 'shi',
	'SHI27806' => 'shi',
	'SHI28576' => 'shi',
	'SHI29081' => 'shi',
	'SHI30038' => 'shi',
	'SHI30394' => 'shi',
	'SHI30652' => 'shi',
	'SHI32154' => 'shi',
	'SHI32205' => 'shi',
	'SHI32365' => 'shi',
	'SHI32439' => 'shi',
	'SHI32505' => 'shi',
	'SHI32626' => 'shi',
	'SHI32714' => 'shi',
	'SHI32715' => 'shi',
	'SHI32716' => 'shi',
	'SHI33118' => 'shi',
	'SHI33318' => 'shi',
	'SHI33373' => 'shi',
	'SHI33512' => 'shi',
	'SHI33625' => 'shi',
	'SHI34327' => 'shi',
	'SHI35604' => 'shi',
	'SHI36119' => 'shi',
	'SHI36120' => 'shi',
	'SHI44959' => 'shi',
	'SHI46406' => 'shi',
	'SHI48191' => 'shi',
	'SHI48192' => 'shi',
	'Solyc10g150111.1' => 'sly',
	'Solyc12g062340.2' => 'sly',
	'Sopen00g001750' => 'spe',
	'Sopen00g001820' => 'spe',
	'Sopen00g001830' => 'spe',
	'Sopen00g001890' => 'spe',
	'Sopen00g002240' => 'spe',
	'Sopen00g003950' => 'spe',
	'Sopen00g004130' => 'spe',
	'Sopen00g004810' => 'spe',
	'Sopen00g005120' => 'spe',
	'Sopen00g005190' => 'spe',
	'Sopen00g007000' => 'spe',
	'Sopen00g007210' => 'spe',
	'Sopen00g012840' => 'spe',
	'Sopen00g013060' => 'spe',
	'Sopen00g013610' => 'spe',
	'Sopen00g013630' => 'spe',
	'Sopen01g004610' => 'spe',
	'Sopen01g007660' => 'spe',
	'Sopen01g007750' => 'spe',
	'Sopen01g007760' => 'spe',
	'Sopen01g007770' => 'spe',
	'Sopen01g007860' => 'spe',
	'Sopen01g009130' => 'spe',
	'Sopen01g009820' => 'spe',
	'Sopen01g011240' => 'spe',
	'Sopen01g012740' => 'spe',
	'Sopen01g013840' => 'spe',
	'Sopen01g013850' => 'spe',
	'Sopen01g016140' => 'spe',
	'Sopen01g016150' => 'spe',
	'Sopen01g016830' => 'spe',
	'Sopen01g017260' => 'spe',
	'Sopen01g019000' => 'spe',
	'Sopen01g019690' => 'spe',
	'Sopen01g022160' => 'spe',
	'Sopen01g024000' => 'spe',
	'Sopen01g024670' => 'spe',
	'Sopen01g024770' => 'spe',
	'Sopen01g024900' => 'spe',
	'Sopen01g025130' => 'spe',
	'Sopen01g026370' => 'spe',
	'Sopen01g041640' => 'spe',
	'Sopen01g046930' => 'spe',
	'Sopen02g001360' => 'spe',
	'Sopen02g002010' => 'spe',
	'Sopen02g003600' => 'spe',
	'Sopen02g003730' => 'spe',
	'Sopen02g005430' => 'spe',
	'Sopen02g005510' => 'spe',
	'Sopen02g006840' => 'spe',
	'Sopen02g007390' => 'spe',
	'Sopen02g007420' => 'spe',
	'Sopen02g007540' => 'spe',
	'Sopen02g007920' => 'spe',
	'Sopen02g008960' => 'spe',
	'Sopen02g009450' => 'spe',
	'Sopen02g009460' => 'spe',
	'Sopen02g011320' => 'spe',
	'Sopen02g012680' => 'spe',
	'Sopen02g018090' => 'spe',
	'Sopen02g022140' => 'spe',
	'Sopen03g010330' => 'spe',
	'Sopen03g013130' => 'spe',
	'Sopen03g013180' => 'spe',
	'Sopen03g013230' => 'spe',
	'Sopen03g014110' => 'spe',
	'Sopen03g015260' => 'spe',
	'Sopen03g015790' => 'spe',
	'Sopen03g018360' => 'spe',
	'Sopen03g024470' => 'spe',
	'Sopen03g026800' => 'spe',
	'Sopen04g003180' => 'spe',
	'Sopen04g008260' => 'spe',
	'Sopen04g010320' => 'spe',
	'Sopen04g011020' => 'spe',
	'Sopen04g011200' => 'spe',
	'Sopen04g011280' => 'spe',
	'Sopen04g021910' => 'spe',
	'Sopen04g023870' => 'spe',
	'Sopen05g009880' => 'spe',
	'Sopen05g011580' => 'spe',
	'Sopen05g012230' => 'spe',
	'Sopen05g012500' => 'spe',
	'Sopen05g012560' => 'spe',
	'Sopen05g012570' => 'spe',
	'Sopen05g012760' => 'spe',
	'Sopen05g013710' => 'spe',
	'Sopen05g015050' => 'spe',
	'Sopen05g026090' => 'spe',
	'Sopen05g028020' => 'spe',
	'Sopen05g028610' => 'spe',
	'Sopen05g029300' => 'spe',
	'Sopen06g005520' => 'spe',
	'Sopen06g006750' => 'spe',
	'Sopen06g008160' => 'spe',
	'Sopen06g009120' => 'spe',
	'Sopen06g013550' => 'spe',
	'Sopen06g015340' => 'spe',
	'Sopen06g018330' => 'spe',
	'Sopen06g021630' => 'spe',
	'Sopen06g021650' => 'spe',
	'Sopen07g006730' => 'spe',
	'Sopen07g008690' => 'spe',
	'Sopen07g008700' => 'spe',
	'Sopen07g008720' => 'spe',
	'Sopen07g008870' => 'spe',
	'Sopen07g009400' => 'spe',
	'Sopen07g009410' => 'spe',
	'Sopen07g009470' => 'spe',
	'Sopen07g009540' => 'spe',
	'Sopen07g011060' => 'spe',
	'Sopen07g011110' => 'spe',
	'Sopen07g011820' => 'spe',
	'Sopen07g013260' => 'spe',
	'Sopen07g014740' => 'spe',
	'Sopen07g015160' => 'spe',
	'Sopen07g015230' => 'spe',
	'Sopen07g016240' => 'spe',
	'Sopen07g017200' => 'spe',
	'Sopen07g017810' => 'spe',
	'Sopen07g019030' => 'spe',
	'Sopen07g020430' => 'spe',
	'Sopen07g021010' => 'spe',
	'Sopen07g021340' => 'spe',
	'Sopen07g022950' => 'spe',
	'Sopen07g027860' => 'spe',
	'Sopen08g007820' => 'spe',
	'Sopen08g009330' => 'spe',
	'Sopen08g012310' => 'spe',
	'Sopen08g012560' => 'spe',
	'Sopen08g014040' => 'spe',
	'Sopen08g014650' => 'spe',
	'Sopen08g017020' => 'spe',
	'Sopen08g018300' => 'spe',
	'Sopen08g020530' => 'spe',
	'Sopen09g008590' => 'spe',
	'Sopen09g008780' => 'spe',
	'Sopen09g011540' => 'spe',
	'Sopen09g011920' => 'spe',
	'Sopen09g014170' => 'spe',
	'Sopen09g016520' => 'spe',
	'Sopen09g021030' => 'spe',
	'Sopen09g023110' => 'spe',
	'Sopen09g024750' => 'spe',
	'Sopen09g025230' => 'spe',
	'Sopen09g025600' => 'spe',
	'Sopen09g034660' => 'spe',
	'Sopen10g006700' => 'spe',
	'Sopen10g009130' => 'spe',
	'Sopen10g009140' => 'spe',
	'Sopen10g009560' => 'spe',
	'Sopen10g010340' => 'spe',
	'Sopen10g011040' => 'spe',
	'Sopen10g013650' => 'spe',
	'Sopen10g014130' => 'spe',
	'Sopen10g014140' => 'spe',
	'Sopen10g014760' => 'spe',
	'Sopen10g015080' => 'spe',
	'Sopen10g015830' => 'spe',
	'Sopen10g018240' => 'spe',
	'Sopen10g018300' => 'spe',
	'Sopen10g018350' => 'spe',
	'Sopen10g018460' => 'spe',
	'Sopen10g018670' => 'spe',
	'Sopen10g019040' => 'spe',
	'Sopen10g019330' => 'spe',
	'Sopen10g019340' => 'spe',
	'Sopen10g019360' => 'spe',
	'Sopen10g019370' => 'spe',
	'Sopen10g020620' => 'spe',
	'Sopen10g021550' => 'spe',
	'Sopen10g022160' => 'spe',
	'Sopen10g023540' => 'spe',
	'Sopen10g023570' => 'spe',
	'Sopen10g023580' => 'spe',
	'Sopen10g023600' => 'spe',
	'Sopen10g023620' => 'spe',
	'Sopen10g023650' => 'spe',
	'Sopen10g024800' => 'spe',
	'Sopen10g026170' => 'spe',
	'Sopen11g007790' => 'spe',
	'Sopen11g010170' => 'spe',
	'Sopen11g010580' => 'spe',
	'Sopen11g013420' => 'spe',
	'Sopen11g016330' => 'spe',
	'Sopen11g017010' => 'spe',
	'Sopen11g018110' => 'spe',
	'Sopen11g018960' => 'spe',
	'Sopen11g019000' => 'spe',
	'Sopen11g019970' => 'spe',
	'Sopen11g020340' => 'spe',
	'Sopen11g020970' => 'spe',
	'Sopen12g008510' => 'spe',
	'Sopen12g008910' => 'spe',
	'Sopen12g009010' => 'spe',
	'Sopen12g009120' => 'spe',
	'Sopen12g009340' => 'spe',
	'Sopen12g009580' => 'spe',
	'Sopen12g010190' => 'spe',
	'Sopen12g010320' => 'spe',
	'Sopen12g010370' => 'spe',
	'Sopen12g012140' => 'spe',
	'Sopen12g012700' => 'spe',
	'Sopen12g013490' => 'spe',
	'Sopen12g014290' => 'spe',
	'Sopen12g015060' => 'spe',
	'Sopen12g015610' => 'spe',
	'Sopen12g018380' => 'spe',
	'Sopen12g019150' => 'spe',
	'Sopen12g020560' => 'spe',
	'Sopen12g023320' => 'spe',
	'Sp3g24190' => 'spa',
	'Sp4g07270' => 'spa',
	'Sp4g07530' => 'spa',
	'Sp4g07670' => 'spa',
	'Sp6g09360' => 'spa',
	'Sp7g04180' => 'spa',
	'Sp7g04980' => 'spa',
	'Sp7g08200' => 'spa',
	'Sp7g09660' => 'spa',
	'SpUn0081_0010' => 'spa',
	'THA.LOC104803417' => 'tha',
	'THA.LOC104817059' => 'tha',
	'Thecc.01G188700' => 'tca',
	'Thecc.05G106700' => 'tca',
	'Thecc.06G068800' => 'tca',
	'Thecc.07G189100' => 'tca',
	'Thecc.09G172800' => 'tca',
	'Thhalv10023044m.g' => 'esa',
	'Thhalv10023881m.g' => 'esa',
	'Thhalv10024067m.g' => 'esa'
)
$gf_id = 'HOM05D000691'
$gf_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$gf_types_configuration = array(
	'HOMFAM' => array(
		'order' => '1',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	),
	'ORTHOFAM' => array(
		'order' => '2',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	)
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$allow_async_use = true
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D000691'
)
$data_identifier = 'HOM05D000691'
$data_type = 'gf_id'
$species_gene_counts = array(
	'amhyb' => (int) 18,
	'aly' => (int) 1,
	'atr' => (int) 21,
	'acertr' => (int) 1,
	'cqu' => (int) 90,
	'bol' => (int) 1,
	'can' => (int) 7,
	'cil' => (int) 3,
	'cla' => (int) 15,
	'col' => (int) 1,
	'cpa' => (int) 2,
	'csa' => (int) 7,
	'camsi' => (int) 10,
	'din' => (int) 1,
	'dzi' => (int) 2,
	'bvu' => (int) 18,
	'fve' => (int) 22,
	'gra' => (int) 1,
	'han' => (int) 7,
	'hma' => (int) 9,
	'sun' => (int) 16,
	'lonja' => (int) 46,
	'mes' => (int) 8,
	'mbi' => (int) 2,
	'cme' => (int) 6,
	'oeu' => (int) 110,
	'stu' => (int) 45,
	'ptr' => (int) 1,
	'rch' => (int) 1,
	'sci' => (int) 1,
	'sgi' => (int) 31,
	'sas' => (int) 1,
	'shi' => (int) 89,
	'sly' => (int) 2,
	'spe' => (int) 211,
	'spa' => (int) 10,
	'tha' => (int) 2,
	'tca' => (int) 5,
	'esa' => (int) 3
)
$gf_gene_species = 'esa'
$gf_gene_id = 'Thhalv10024067m.g'
$species_info = array(
	'species' => 'bol',
	'common_name' => 'Brassica oleracea',
	'tax_id' => '109376',
	'version' => 'v1.0'
)
$local_species = 'bol'
$disabled = ''
$selected = ''
$num_hits = (int) 0
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Analysis/custom_tree_creation.ctp, line 27
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933

Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]
Code Context
        $disabled    = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";

        $selected    = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";

        $num_hits    = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D000691',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '827',
		'num_species' => '39'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'gf_genes' => array(
		'Ah.01g012340' => 'amhyb',
		'Ah.01g013530' => 'amhyb',
		'Ah.03g143080' => 'amhyb',
		'Ah.06g186750' => 'amhyb',
		'Ah.06g186800' => 'amhyb',
		'Ah.07g200050' => 'amhyb',
		'Ah.08g209110' => 'amhyb',
		'Ah.09g229600' => 'amhyb',
		'Ah.09g229610' => 'amhyb',
		'Ah.10g026490' => 'amhyb',
		'Ah.12g065350' => 'amhyb',
		'Ah.13g069310' => 'amhyb',
		'Ah.14g080130' => 'amhyb',
		'Ah.14g081130' => 'amhyb',
		'Ah.14g081140' => 'amhyb',
		'Ah.16g109160' => 'amhyb',
		'Ah.16g109170' => 'amhyb',
		'Ah.16g109370' => 'amhyb',
		'AL3G47720' => 'aly',
		'ATR0012G060' => 'atr',
		'ATR0026G029' => 'atr',
		'ATR0193G043' => 'atr',
		'ATR0561G076' => 'atr',
		'ATR0561G181' => 'atr',
		'ATR0568G014' => 'atr',
		'ATR0568G114' => 'atr',
		'ATR0620G039' => 'atr',
		'ATR0629G125' => 'atr',
		'ATR0661G583' => 'atr',
		'ATR0686G019' => 'atr',
		'ATR0693G232' => 'atr',
		'ATR0697G104' => 'atr',
		'ATR0789G146' => 'atr',
		'ATR0794G066' => 'atr',
		'ATR1127G127' => 'atr',
		'ATR1131G040' => 'atr',
		'ATR1134G004' => 'atr',
		'ATR1134G095' => 'atr',
		'ATR1152G110' => 'atr',
		'ATR1153G065' => 'atr',
		'Atru.chr3.2296' => 'acertr',
		'AUR62000692' => 'cqu',
		'AUR62001473' => 'cqu',
		'AUR62001812' => 'cqu',
		'AUR62002706' => 'cqu',
		'AUR62003904' => 'cqu',
		'AUR62003905' => 'cqu',
		'AUR62004840' => 'cqu',
		'AUR62005160' => 'cqu',
		'AUR62005604' => 'cqu',
		'AUR62005891' => 'cqu',
		'AUR62007290' => 'cqu',
		'AUR62007502' => 'cqu',
		'AUR62007923' => 'cqu',
		'AUR62009972' => 'cqu',
		'AUR62010488' => 'cqu',
		'AUR62010643' => 'cqu',
		'AUR62012637' => 'cqu',
		'AUR62013492' => 'cqu',
		'AUR62014239' => 'cqu',
		'AUR62014878' => 'cqu',
		'AUR62015857' => 'cqu',
		'AUR62016224' => 'cqu',
		'AUR62017430' => 'cqu',
		'AUR62017467' => 'cqu',
		'AUR62018234' => 'cqu',
		'AUR62019060' => 'cqu',
		'AUR62019607' => 'cqu',
		'AUR62019661' => 'cqu',
		'AUR62022775' => 'cqu',
		'AUR62023603' => 'cqu',
		'AUR62024563' => 'cqu',
		'AUR62026199' => 'cqu',
		'AUR62026905' => 'cqu',
		'AUR62028639' => 'cqu',
		'AUR62029168' => 'cqu',
		'AUR62029551' => 'cqu',
		'AUR62029860' => 'cqu',
		'AUR62030164' => 'cqu',
		'AUR62031208' => 'cqu',
		'AUR62031287' => 'cqu',
		'AUR62031817' => 'cqu',
		'AUR62032126' => 'cqu',
		'AUR62032358' => 'cqu',
		'AUR62032884' => 'cqu',
		'AUR62032892' => 'cqu',
		'AUR62033082' => 'cqu',
		'AUR62033100' => 'cqu',
		'AUR62033255' => 'cqu',
		'AUR62033698' => 'cqu',
		'AUR62033757' => 'cqu',
		'AUR62034760' => 'cqu',
		'AUR62034860' => 'cqu',
		'AUR62035179' => 'cqu',
		'AUR62035881' => 'cqu',
		'AUR62036824' => 'cqu',
		'AUR62036876' => 'cqu',
		'AUR62037319' => 'cqu',
		'AUR62037362' => 'cqu',
		'AUR62037541' => 'cqu',
		'AUR62037853' => 'cqu',
		'AUR62038299' => 'cqu',
		'AUR62038563' => 'cqu',
		'AUR62038564' => 'cqu',
		'AUR62038594' => 'cqu',
		'AUR62038792' => 'cqu',
		'AUR62038947' => 'cqu',
		'AUR62039030' => 'cqu',
		'AUR62039231' => 'cqu',
		'AUR62039452' => 'cqu',
		'AUR62040334' => 'cqu',
		'AUR62040869' => 'cqu',
		'AUR62040870' => 'cqu',
		'AUR62040916' => 'cqu',
		'AUR62041199' => 'cqu',
		'AUR62041334' => 'cqu',
		'AUR62041608' => 'cqu',
		'AUR62041609' => 'cqu',
		'AUR62041833' => 'cqu',
		'AUR62041834' => 'cqu',
		'AUR62042054' => 'cqu',
		'AUR62042134' => 'cqu',
		'AUR62042236' => 'cqu',
		'AUR62042281' => 'cqu',
		'AUR62042593' => 'cqu',
		'AUR62042653' => 'cqu',
		'AUR62043025' => 'cqu',
		'AUR62043026' => 'cqu',
		'AUR62043063' => 'cqu',
		'AUR62043091' => 'cqu',
		'AUR62043320' => 'cqu',
		'BolC5t32558H' => 'bol',
		'CAN.G1036.12' => 'can',
		'CAN.G1432.23' => 'can',
		'CAN.G159.19' => 'can',
		'CAN.G4114.1' => 'can',
		'CAN.G492.85' => 'can',
		'CAN.G500.95' => 'can',
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		'Sopen00g013630' => 'spe',
		'Sopen01g004610' => 'spe',
		'Sopen01g007660' => 'spe',
		'Sopen01g007750' => 'spe',
		'Sopen01g007760' => 'spe',
		'Sopen01g007770' => 'spe',
		'Sopen01g007860' => 'spe',
		'Sopen01g009130' => 'spe',
		'Sopen01g009820' => 'spe',
		'Sopen01g011240' => 'spe',
		'Sopen01g012740' => 'spe',
		'Sopen01g013840' => 'spe',
		'Sopen01g013850' => 'spe',
		'Sopen01g016140' => 'spe',
		'Sopen01g016150' => 'spe',
		'Sopen01g016830' => 'spe',
		'Sopen01g017260' => 'spe',
		'Sopen01g019000' => 'spe',
		'Sopen01g019690' => 'spe',
		'Sopen01g022160' => 'spe',
		'Sopen01g024000' => 'spe',
		'Sopen01g024670' => 'spe',
		'Sopen01g024770' => 'spe',
		'Sopen01g024900' => 'spe',
		'Sopen01g025130' => 'spe',
		'Sopen01g026370' => 'spe',
		'Sopen01g041640' => 'spe',
		'Sopen01g046930' => 'spe',
		'Sopen02g001360' => 'spe',
		'Sopen02g002010' => 'spe',
		'Sopen02g003600' => 'spe',
		'Sopen02g003730' => 'spe',
		'Sopen02g005430' => 'spe',
		'Sopen02g005510' => 'spe',
		'Sopen02g006840' => 'spe',
		'Sopen02g007390' => 'spe',
		'Sopen02g007420' => 'spe',
		'Sopen02g007540' => 'spe',
		'Sopen02g007920' => 'spe',
		'Sopen02g008960' => 'spe',
		'Sopen02g009450' => 'spe',
		'Sopen02g009460' => 'spe',
		'Sopen02g011320' => 'spe',
		'Sopen02g012680' => 'spe',
		'Sopen02g018090' => 'spe',
		'Sopen02g022140' => 'spe',
		'Sopen03g010330' => 'spe',
		'Sopen03g013130' => 'spe',
		'Sopen03g013180' => 'spe',
		'Sopen03g013230' => 'spe',
		'Sopen03g014110' => 'spe',
		'Sopen03g015260' => 'spe',
		'Sopen03g015790' => 'spe',
		'Sopen03g018360' => 'spe',
		'Sopen03g024470' => 'spe',
		'Sopen03g026800' => 'spe',
		'Sopen04g003180' => 'spe',
		'Sopen04g008260' => 'spe',
		'Sopen04g010320' => 'spe',
		'Sopen04g011020' => 'spe',
		'Sopen04g011200' => 'spe',
		'Sopen04g011280' => 'spe',
		'Sopen04g021910' => 'spe',
		'Sopen04g023870' => 'spe',
		'Sopen05g009880' => 'spe',
		'Sopen05g011580' => 'spe',
		'Sopen05g012230' => 'spe',
		'Sopen05g012500' => 'spe',
		'Sopen05g012560' => 'spe',
		'Sopen05g012570' => 'spe',
		'Sopen05g012760' => 'spe',
		'Sopen05g013710' => 'spe',
		'Sopen05g015050' => 'spe',
		'Sopen05g026090' => 'spe',
		'Sopen05g028020' => 'spe',
		'Sopen05g028610' => 'spe',
		'Sopen05g029300' => 'spe',
		'Sopen06g005520' => 'spe',
		'Sopen06g006750' => 'spe',
		'Sopen06g008160' => 'spe',
		'Sopen06g009120' => 'spe',
		'Sopen06g013550' => 'spe',
		'Sopen06g015340' => 'spe',
		'Sopen06g018330' => 'spe',
		'Sopen06g021630' => 'spe',
		'Sopen06g021650' => 'spe',
		'Sopen07g006730' => 'spe',
		'Sopen07g008690' => 'spe',
		'Sopen07g008700' => 'spe',
		'Sopen07g008720' => 'spe',
		'Sopen07g008870' => 'spe',
		'Sopen07g009400' => 'spe',
		'Sopen07g009410' => 'spe',
		'Sopen07g009470' => 'spe',
		'Sopen07g009540' => 'spe',
		'Sopen07g011060' => 'spe',
		'Sopen07g011110' => 'spe',
		'Sopen07g011820' => 'spe',
		'Sopen07g013260' => 'spe',
		'Sopen07g014740' => 'spe',
		'Sopen07g015160' => 'spe',
		'Sopen07g015230' => 'spe',
		'Sopen07g016240' => 'spe',
		'Sopen07g017200' => 'spe',
		'Sopen07g017810' => 'spe',
		'Sopen07g019030' => 'spe',
		'Sopen07g020430' => 'spe',
		'Sopen07g021010' => 'spe',
		'Sopen07g021340' => 'spe',
		'Sopen07g022950' => 'spe',
		'Sopen07g027860' => 'spe',
		'Sopen08g007820' => 'spe',
		'Sopen08g009330' => 'spe',
		'Sopen08g012310' => 'spe',
		'Sopen08g012560' => 'spe',
		'Sopen08g014040' => 'spe',
		'Sopen08g014650' => 'spe',
		'Sopen08g017020' => 'spe',
		'Sopen08g018300' => 'spe',
		'Sopen08g020530' => 'spe',
		'Sopen09g008590' => 'spe',
		'Sopen09g008780' => 'spe',
		'Sopen09g011540' => 'spe',
		'Sopen09g011920' => 'spe',
		'Sopen09g014170' => 'spe',
		'Sopen09g016520' => 'spe',
		'Sopen09g021030' => 'spe',
		'Sopen09g023110' => 'spe',
		'Sopen09g024750' => 'spe',
		'Sopen09g025230' => 'spe',
		'Sopen09g025600' => 'spe',
		'Sopen09g034660' => 'spe',
		'Sopen10g006700' => 'spe',
		'Sopen10g009130' => 'spe',
		'Sopen10g009140' => 'spe',
		'Sopen10g009560' => 'spe',
		'Sopen10g010340' => 'spe',
		'Sopen10g011040' => 'spe',
		'Sopen10g013650' => 'spe',
		'Sopen10g014130' => 'spe',
		'Sopen10g014140' => 'spe',
		'Sopen10g014760' => 'spe',
		'Sopen10g015080' => 'spe',
		'Sopen10g015830' => 'spe',
		'Sopen10g018240' => 'spe',
		'Sopen10g018300' => 'spe',
		'Sopen10g018350' => 'spe',
		'Sopen10g018460' => 'spe',
		'Sopen10g018670' => 'spe',
		'Sopen10g019040' => 'spe',
		'Sopen10g019330' => 'spe',
		'Sopen10g019340' => 'spe',
		'Sopen10g019360' => 'spe',
		'Sopen10g019370' => 'spe',
		'Sopen10g020620' => 'spe',
		'Sopen10g021550' => 'spe',
		'Sopen10g022160' => 'spe',
		'Sopen10g023540' => 'spe',
		'Sopen10g023570' => 'spe',
		'Sopen10g023580' => 'spe',
		'Sopen10g023600' => 'spe',
		'Sopen10g023620' => 'spe',
		'Sopen10g023650' => 'spe',
		'Sopen10g024800' => 'spe',
		'Sopen10g026170' => 'spe',
		'Sopen11g007790' => 'spe',
		'Sopen11g010170' => 'spe',
		'Sopen11g010580' => 'spe',
		'Sopen11g013420' => 'spe',
		'Sopen11g016330' => 'spe',
		'Sopen11g017010' => 'spe',
		'Sopen11g018110' => 'spe',
		'Sopen11g018960' => 'spe',
		'Sopen11g019000' => 'spe',
		'Sopen11g019970' => 'spe',
		'Sopen11g020340' => 'spe',
		'Sopen11g020970' => 'spe',
		'Sopen12g008510' => 'spe',
		'Sopen12g008910' => 'spe',
		'Sopen12g009010' => 'spe',
		'Sopen12g009120' => 'spe',
		'Sopen12g009340' => 'spe',
		'Sopen12g009580' => 'spe',
		'Sopen12g010190' => 'spe',
		'Sopen12g010320' => 'spe',
		'Sopen12g010370' => 'spe',
		'Sopen12g012140' => 'spe',
		'Sopen12g012700' => 'spe',
		'Sopen12g013490' => 'spe',
		'Sopen12g014290' => 'spe',
		'Sopen12g015060' => 'spe',
		'Sopen12g015610' => 'spe',
		'Sopen12g018380' => 'spe',
		'Sopen12g019150' => 'spe',
		'Sopen12g020560' => 'spe',
		'Sopen12g023320' => 'spe',
		'Sp3g24190' => 'spa',
		'Sp4g07270' => 'spa',
		'Sp4g07530' => 'spa',
		'Sp4g07670' => 'spa',
		'Sp6g09360' => 'spa',
		'Sp7g04180' => 'spa',
		'Sp7g04980' => 'spa',
		'Sp7g08200' => 'spa',
		'Sp7g09660' => 'spa',
		'SpUn0081_0010' => 'spa',
		'THA.LOC104803417' => 'tha',
		'THA.LOC104817059' => 'tha',
		'Thecc.01G188700' => 'tca',
		'Thecc.05G106700' => 'tca',
		'Thecc.06G068800' => 'tca',
		'Thecc.07G189100' => 'tca',
		'Thecc.09G172800' => 'tca',
		'Thhalv10023044m.g' => 'esa',
		'Thhalv10023881m.g' => 'esa',
		'Thhalv10024067m.g' => 'esa'
	),
	'gf_id' => 'HOM05D000691',
	'gf_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'gf_types_configuration' => array(
		'HOMFAM' => array(
			'order' => '1',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		),
		'ORTHOFAM' => array(
			'order' => '2',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		)
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'allow_async_use' => true,
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D000691'
	),
	'data_identifier' => 'HOM05D000691',
	'data_type' => 'gf_id'
)
$sidebar_info = array(
	'gf_id' => 'HOM05D000691',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '827',
	'num_species' => '39'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$gf_genes = array(
	'Ah.01g012340' => 'amhyb',
	'Ah.01g013530' => 'amhyb',
	'Ah.03g143080' => 'amhyb',
	'Ah.06g186750' => 'amhyb',
	'Ah.06g186800' => 'amhyb',
	'Ah.07g200050' => 'amhyb',
	'Ah.08g209110' => 'amhyb',
	'Ah.09g229600' => 'amhyb',
	'Ah.09g229610' => 'amhyb',
	'Ah.10g026490' => 'amhyb',
	'Ah.12g065350' => 'amhyb',
	'Ah.13g069310' => 'amhyb',
	'Ah.14g080130' => 'amhyb',
	'Ah.14g081130' => 'amhyb',
	'Ah.14g081140' => 'amhyb',
	'Ah.16g109160' => 'amhyb',
	'Ah.16g109170' => 'amhyb',
	'Ah.16g109370' => 'amhyb',
	'AL3G47720' => 'aly',
	'ATR0012G060' => 'atr',
	'ATR0026G029' => 'atr',
	'ATR0193G043' => 'atr',
	'ATR0561G076' => 'atr',
	'ATR0561G181' => 'atr',
	'ATR0568G014' => 'atr',
	'ATR0568G114' => 'atr',
	'ATR0620G039' => 'atr',
	'ATR0629G125' => 'atr',
	'ATR0661G583' => 'atr',
	'ATR0686G019' => 'atr',
	'ATR0693G232' => 'atr',
	'ATR0697G104' => 'atr',
	'ATR0789G146' => 'atr',
	'ATR0794G066' => 'atr',
	'ATR1127G127' => 'atr',
	'ATR1131G040' => 'atr',
	'ATR1134G004' => 'atr',
	'ATR1134G095' => 'atr',
	'ATR1152G110' => 'atr',
	'ATR1153G065' => 'atr',
	'Atru.chr3.2296' => 'acertr',
	'AUR62000692' => 'cqu',
	'AUR62001473' => 'cqu',
	'AUR62001812' => 'cqu',
	'AUR62002706' => 'cqu',
	'AUR62003904' => 'cqu',
	'AUR62003905' => 'cqu',
	'AUR62004840' => 'cqu',
	'AUR62005160' => 'cqu',
	'AUR62005604' => 'cqu',
	'AUR62005891' => 'cqu',
	'AUR62007290' => 'cqu',
	'AUR62007502' => 'cqu',
	'AUR62007923' => 'cqu',
	'AUR62009972' => 'cqu',
	'AUR62010488' => 'cqu',
	'AUR62010643' => 'cqu',
	'AUR62012637' => 'cqu',
	'AUR62013492' => 'cqu',
	'AUR62014239' => 'cqu',
	'AUR62014878' => 'cqu',
	'AUR62015857' => 'cqu',
	'AUR62016224' => 'cqu',
	'AUR62017430' => 'cqu',
	'AUR62017467' => 'cqu',
	'AUR62018234' => 'cqu',
	'AUR62019060' => 'cqu',
	'AUR62019607' => 'cqu',
	'AUR62019661' => 'cqu',
	'AUR62022775' => 'cqu',
	'AUR62023603' => 'cqu',
	'AUR62024563' => 'cqu',
	'AUR62026199' => 'cqu',
	'AUR62026905' => 'cqu',
	'AUR62028639' => 'cqu',
	'AUR62029168' => 'cqu',
	'AUR62029551' => 'cqu',
	'AUR62029860' => 'cqu',
	'AUR62030164' => 'cqu',
	'AUR62031208' => 'cqu',
	'AUR62031287' => 'cqu',
	'AUR62031817' => 'cqu',
	'AUR62032126' => 'cqu',
	'AUR62032358' => 'cqu',
	'AUR62032884' => 'cqu',
	'AUR62032892' => 'cqu',
	'AUR62033082' => 'cqu',
	'AUR62033100' => 'cqu',
	'AUR62033255' => 'cqu',
	'AUR62033698' => 'cqu',
	'AUR62033757' => 'cqu',
	'AUR62034760' => 'cqu',
	'AUR62034860' => 'cqu',
	'AUR62035179' => 'cqu',
	'AUR62035881' => 'cqu',
	'AUR62036824' => 'cqu',
	'AUR62036876' => 'cqu',
	'AUR62037319' => 'cqu',
	'AUR62037362' => 'cqu',
	'AUR62037541' => 'cqu',
	'AUR62037853' => 'cqu',
	'AUR62038299' => 'cqu',
	'AUR62038563' => 'cqu',
	'AUR62038564' => 'cqu',
	'AUR62038594' => 'cqu',
	'AUR62038792' => 'cqu',
	'AUR62038947' => 'cqu',
	'AUR62039030' => 'cqu',
	'AUR62039231' => 'cqu',
	'AUR62039452' => 'cqu',
	'AUR62040334' => 'cqu',
	'AUR62040869' => 'cqu',
	'AUR62040870' => 'cqu',
	'AUR62040916' => 'cqu',
	'AUR62041199' => 'cqu',
	'AUR62041334' => 'cqu',
	'AUR62041608' => 'cqu',
	'AUR62041609' => 'cqu',
	'AUR62041833' => 'cqu',
	'AUR62041834' => 'cqu',
	'AUR62042054' => 'cqu',
	'AUR62042134' => 'cqu',
	'AUR62042236' => 'cqu',
	'AUR62042281' => 'cqu',
	'AUR62042593' => 'cqu',
	'AUR62042653' => 'cqu',
	'AUR62043025' => 'cqu',
	'AUR62043026' => 'cqu',
	'AUR62043063' => 'cqu',
	'AUR62043091' => 'cqu',
	'AUR62043320' => 'cqu',
	'BolC5t32558H' => 'bol',
	'CAN.G1036.12' => 'can',
	'CAN.G1432.23' => 'can',
	'CAN.G159.19' => 'can',
	'CAN.G4114.1' => 'can',
	'CAN.G492.85' => 'can',
	'CAN.G500.95' => 'can',
	'CAN.G93.31' => 'can',
	'CiPaw.04G054900' => 'cil',
	'CiPaw.05G045400' => 'cil',
	'CiPaw.15G094100' => 'cil',
	'ClCG00G000700' => 'cla',
	'ClCG00G000780' => 'cla',
	'ClCG01G012280' => 'cla',
	'ClCG02G006140' => 'cla',
	'ClCG02G009810' => 'cla',
	'ClCG03G010170' => 'cla',
	'ClCG03G010260' => 'cla',
	'ClCG04G000770' => 'cla',
	'ClCG05G013980' => 'cla',
	'ClCG06G009110' => 'cla',
	'ClCG06G009120' => 'cla',
	'ClCG08G002190' => 'cla',
	'ClCG09G013830' => 'cla',
	'ClCG10G006760' => 'cla',
	'ClCG11G007310' => 'cla',
	'COL.COLO4_16141' => 'col',
	'Cpa.g.sc202.2' => 'cpa',
	'Cpa.g.sc76.18' => 'cpa',
	'CsaV3_1G031080' => 'csa',
	'CsaV3_4G011870' => 'csa',
	'CsaV3_4G014860' => 'csa',
	'CsaV3_4G021860' => 'csa',
	'CsaV3_6G009880' => 'csa',
	'CsaV3_7G021240' => 'csa',
	'CsaV3_UNG240600' => 'csa',
	'CSS0003516' => 'camsi',
	'CSS0013023' => 'camsi',
	'CSS0017680' => 'camsi',
	'CSS0018551' => 'camsi',
	'CSS0026792' => 'camsi',
	'CSS0028271' => 'camsi',
	'CSS0033603' => 'camsi',
	'CSS0040789' => 'camsi',
	'CSS0045068' => 'camsi',
	'CSS0045803' => 'camsi',
	'Dinv10528' => 'din',
	'Duzib116G0875' => 'dzi',
	'Duzib128G0055' => 'dzi',
	'EL10Ac1g02377' => 'bvu',
	'EL10Ac1g02378' => 'bvu',
	'EL10Ac2g03486' => 'bvu',
	'EL10Ac2g03487' => 'bvu',
	'EL10Ac3g05722' => 'bvu',
	'EL10Ac3g06186' => 'bvu',
	'EL10Ac5g11258' => 'bvu',
	'EL10Ac6g13831' => 'bvu',
	'EL10Ac6g14162' => 'bvu',
	'EL10Ac6g14316' => 'bvu',
	'EL10Ac6g14317' => 'bvu',
	'EL10Ac6g14588' => 'bvu',
	'EL10Ac7g16302' => 'bvu',
	'EL10Ac7g16543' => 'bvu',
	'EL10Ac8g18762' => 'bvu',
	'EL10Ac9g20847' => 'bvu',
	'EL10As7g23731' => 'bvu',
	'EL10As7g23732' => 'bvu',
	'FvH4_1g23713' => 'fve',
	'FvH4_2g00261' => 'fve',
	'FvH4_2g00262' => 'fve',
	'FvH4_2g15681' => 'fve',
	'FvH4_2g17851' => 'fve',
	'FvH4_3g10531' => 'fve',
	'FvH4_3g33536' => 'fve',
	'FvH4_4g03471' => 'fve',
	'FvH4_4g19351' => 'fve',
	'FvH4_4g34281' => 'fve',
	'FvH4_5g03811' => 'fve',
	'FvH4_5g03812' => 'fve',
	'FvH4_5g11822' => 'fve',
	'FvH4_5g31701' => 'fve',
	'FvH4_6g12161' => 'fve',
	'FvH4_6g15222' => 'fve',
	'FvH4_6g15223' => 'fve',
	'FvH4_6g19301' => 'fve',
	'FvH4_6g33011' => 'fve',
	'FvH4_6g50161' => 'fve',
	'FvH4_7g04123' => 'fve',
	'FvH4_c7g00010' => 'fve',
	'Gorai.012G165300' => 'gra',
	'HanXRQChr00c0452g0574871' => 'han',
	'HanXRQChr01g0029471' => 'han',
	'HanXRQChr05g0133501' => 'han',
	'HanXRQChr10g0280141' => 'han',
	'HanXRQChr10g0280631' => 'han',
	'HanXRQChr13g0409991' => 'han',
	'HanXRQChr15g0468361' => 'han',
	'Hma1.2p1_0021F.1_g014270' => 'hma',
	'Hma1.2p1_0026F.1_g016730' => 'hma',
	'Hma1.2p1_0177F.1_g077930' => 'hma',
	'Hma1.2p1_0370F.1_g137540' => 'hma',
	'Hma1.2p1_0637F.1_g193600' => 'hma',
	'Hma1.2p1_1045F.1_g251360' => 'hma',
	'Hma1.2p1_1168F.1_g263120' => 'hma',
	'Hma1.2p1_1640F.1_g295040' => 'hma',
	'Hma1.2p1_2467F.1_g322660' => 'hma',
	'Hund01785' => 'sun',
	'Hund04739' => 'sun',
	'Hund07717' => 'sun',
	'Hund08060' => 'sun',
	'Hund08734' => 'sun',
	'Hund10876' => 'sun',
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	'Sopen10g019330' => 'spe',
	'Sopen10g019340' => 'spe',
	'Sopen10g019360' => 'spe',
	'Sopen10g019370' => 'spe',
	'Sopen10g020620' => 'spe',
	'Sopen10g021550' => 'spe',
	'Sopen10g022160' => 'spe',
	'Sopen10g023540' => 'spe',
	'Sopen10g023570' => 'spe',
	'Sopen10g023580' => 'spe',
	'Sopen10g023600' => 'spe',
	'Sopen10g023620' => 'spe',
	'Sopen10g023650' => 'spe',
	'Sopen10g024800' => 'spe',
	'Sopen10g026170' => 'spe',
	'Sopen11g007790' => 'spe',
	'Sopen11g010170' => 'spe',
	'Sopen11g010580' => 'spe',
	'Sopen11g013420' => 'spe',
	'Sopen11g016330' => 'spe',
	'Sopen11g017010' => 'spe',
	'Sopen11g018110' => 'spe',
	'Sopen11g018960' => 'spe',
	'Sopen11g019000' => 'spe',
	'Sopen11g019970' => 'spe',
	'Sopen11g020340' => 'spe',
	'Sopen11g020970' => 'spe',
	'Sopen12g008510' => 'spe',
	'Sopen12g008910' => 'spe',
	'Sopen12g009010' => 'spe',
	'Sopen12g009120' => 'spe',
	'Sopen12g009340' => 'spe',
	'Sopen12g009580' => 'spe',
	'Sopen12g010190' => 'spe',
	'Sopen12g010320' => 'spe',
	'Sopen12g010370' => 'spe',
	'Sopen12g012140' => 'spe',
	'Sopen12g012700' => 'spe',
	'Sopen12g013490' => 'spe',
	'Sopen12g014290' => 'spe',
	'Sopen12g015060' => 'spe',
	'Sopen12g015610' => 'spe',
	'Sopen12g018380' => 'spe',
	'Sopen12g019150' => 'spe',
	'Sopen12g020560' => 'spe',
	'Sopen12g023320' => 'spe',
	'Sp3g24190' => 'spa',
	'Sp4g07270' => 'spa',
	'Sp4g07530' => 'spa',
	'Sp4g07670' => 'spa',
	'Sp6g09360' => 'spa',
	'Sp7g04180' => 'spa',
	'Sp7g04980' => 'spa',
	'Sp7g08200' => 'spa',
	'Sp7g09660' => 'spa',
	'SpUn0081_0010' => 'spa',
	'THA.LOC104803417' => 'tha',
	'THA.LOC104817059' => 'tha',
	'Thecc.01G188700' => 'tca',
	'Thecc.05G106700' => 'tca',
	'Thecc.06G068800' => 'tca',
	'Thecc.07G189100' => 'tca',
	'Thecc.09G172800' => 'tca',
	'Thhalv10023044m.g' => 'esa',
	'Thhalv10023881m.g' => 'esa',
	'Thhalv10024067m.g' => 'esa'
)
$gf_id = 'HOM05D000691'
$gf_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$gf_types_configuration = array(
	'HOMFAM' => array(
		'order' => '1',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	),
	'ORTHOFAM' => array(
		'order' => '2',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	)
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$allow_async_use = true
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D000691'
)
$data_identifier = 'HOM05D000691'
$data_type = 'gf_id'
$species_gene_counts = array(
	'amhyb' => (int) 18,
	'aly' => (int) 1,
	'atr' => (int) 21,
	'acertr' => (int) 1,
	'cqu' => (int) 90,
	'bol' => (int) 1,
	'can' => (int) 7,
	'cil' => (int) 3,
	'cla' => (int) 15,
	'col' => (int) 1,
	'cpa' => (int) 2,
	'csa' => (int) 7,
	'camsi' => (int) 10,
	'din' => (int) 1,
	'dzi' => (int) 2,
	'bvu' => (int) 18,
	'fve' => (int) 22,
	'gra' => (int) 1,
	'han' => (int) 7,
	'hma' => (int) 9,
	'sun' => (int) 16,
	'lonja' => (int) 46,
	'mes' => (int) 8,
	'mbi' => (int) 2,
	'cme' => (int) 6,
	'oeu' => (int) 110,
	'stu' => (int) 45,
	'ptr' => (int) 1,
	'rch' => (int) 1,
	'sci' => (int) 1,
	'sgi' => (int) 31,
	'sas' => (int) 1,
	'shi' => (int) 89,
	'sly' => (int) 2,
	'spe' => (int) 211,
	'spa' => (int) 10,
	'tha' => (int) 2,
	'tca' => (int) 5,
	'esa' => (int) 3
)
$gf_gene_species = 'esa'
$gf_gene_id = 'Thhalv10024067m.g'
$species_info = array(
	'species' => 'camsi',
	'common_name' => 'Camellia sinensis var. sinensis',
	'tax_id' => '542762',
	'version' => 'CSS_ChrLev_20200506'
)
$local_species = 'camsi'
$disabled = ''
$selected = ''
$num_hits = (int) 0
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Analysis/custom_tree_creation.ctp, line 27
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933

Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]
Code Context
        $disabled    = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";

        $selected    = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";

        $num_hits    = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D000691',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '827',
		'num_species' => '39'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'gf_genes' => array(
		'Ah.01g012340' => 'amhyb',
		'Ah.01g013530' => 'amhyb',
		'Ah.03g143080' => 'amhyb',
		'Ah.06g186750' => 'amhyb',
		'Ah.06g186800' => 'amhyb',
		'Ah.07g200050' => 'amhyb',
		'Ah.08g209110' => 'amhyb',
		'Ah.09g229600' => 'amhyb',
		'Ah.09g229610' => 'amhyb',
		'Ah.10g026490' => 'amhyb',
		'Ah.12g065350' => 'amhyb',
		'Ah.13g069310' => 'amhyb',
		'Ah.14g080130' => 'amhyb',
		'Ah.14g081130' => 'amhyb',
		'Ah.14g081140' => 'amhyb',
		'Ah.16g109160' => 'amhyb',
		'Ah.16g109170' => 'amhyb',
		'Ah.16g109370' => 'amhyb',
		'AL3G47720' => 'aly',
		'ATR0012G060' => 'atr',
		'ATR0026G029' => 'atr',
		'ATR0193G043' => 'atr',
		'ATR0561G076' => 'atr',
		'ATR0561G181' => 'atr',
		'ATR0568G014' => 'atr',
		'ATR0568G114' => 'atr',
		'ATR0620G039' => 'atr',
		'ATR0629G125' => 'atr',
		'ATR0661G583' => 'atr',
		'ATR0686G019' => 'atr',
		'ATR0693G232' => 'atr',
		'ATR0697G104' => 'atr',
		'ATR0789G146' => 'atr',
		'ATR0794G066' => 'atr',
		'ATR1127G127' => 'atr',
		'ATR1131G040' => 'atr',
		'ATR1134G004' => 'atr',
		'ATR1134G095' => 'atr',
		'ATR1152G110' => 'atr',
		'ATR1153G065' => 'atr',
		'Atru.chr3.2296' => 'acertr',
		'AUR62000692' => 'cqu',
		'AUR62001473' => 'cqu',
		'AUR62001812' => 'cqu',
		'AUR62002706' => 'cqu',
		'AUR62003904' => 'cqu',
		'AUR62003905' => 'cqu',
		'AUR62004840' => 'cqu',
		'AUR62005160' => 'cqu',
		'AUR62005604' => 'cqu',
		'AUR62005891' => 'cqu',
		'AUR62007290' => 'cqu',
		'AUR62007502' => 'cqu',
		'AUR62007923' => 'cqu',
		'AUR62009972' => 'cqu',
		'AUR62010488' => 'cqu',
		'AUR62010643' => 'cqu',
		'AUR62012637' => 'cqu',
		'AUR62013492' => 'cqu',
		'AUR62014239' => 'cqu',
		'AUR62014878' => 'cqu',
		'AUR62015857' => 'cqu',
		'AUR62016224' => 'cqu',
		'AUR62017430' => 'cqu',
		'AUR62017467' => 'cqu',
		'AUR62018234' => 'cqu',
		'AUR62019060' => 'cqu',
		'AUR62019607' => 'cqu',
		'AUR62019661' => 'cqu',
		'AUR62022775' => 'cqu',
		'AUR62023603' => 'cqu',
		'AUR62024563' => 'cqu',
		'AUR62026199' => 'cqu',
		'AUR62026905' => 'cqu',
		'AUR62028639' => 'cqu',
		'AUR62029168' => 'cqu',
		'AUR62029551' => 'cqu',
		'AUR62029860' => 'cqu',
		'AUR62030164' => 'cqu',
		'AUR62031208' => 'cqu',
		'AUR62031287' => 'cqu',
		'AUR62031817' => 'cqu',
		'AUR62032126' => 'cqu',
		'AUR62032358' => 'cqu',
		'AUR62032884' => 'cqu',
		'AUR62032892' => 'cqu',
		'AUR62033082' => 'cqu',
		'AUR62033100' => 'cqu',
		'AUR62033255' => 'cqu',
		'AUR62033698' => 'cqu',
		'AUR62033757' => 'cqu',
		'AUR62034760' => 'cqu',
		'AUR62034860' => 'cqu',
		'AUR62035179' => 'cqu',
		'AUR62035881' => 'cqu',
		'AUR62036824' => 'cqu',
		'AUR62036876' => 'cqu',
		'AUR62037319' => 'cqu',
		'AUR62037362' => 'cqu',
		'AUR62037541' => 'cqu',
		'AUR62037853' => 'cqu',
		'AUR62038299' => 'cqu',
		'AUR62038563' => 'cqu',
		'AUR62038564' => 'cqu',
		'AUR62038594' => 'cqu',
		'AUR62038792' => 'cqu',
		'AUR62038947' => 'cqu',
		'AUR62039030' => 'cqu',
		'AUR62039231' => 'cqu',
		'AUR62039452' => 'cqu',
		'AUR62040334' => 'cqu',
		'AUR62040869' => 'cqu',
		'AUR62040870' => 'cqu',
		'AUR62040916' => 'cqu',
		'AUR62041199' => 'cqu',
		'AUR62041334' => 'cqu',
		'AUR62041608' => 'cqu',
		'AUR62041609' => 'cqu',
		'AUR62041833' => 'cqu',
		'AUR62041834' => 'cqu',
		'AUR62042054' => 'cqu',
		'AUR62042134' => 'cqu',
		'AUR62042236' => 'cqu',
		'AUR62042281' => 'cqu',
		'AUR62042593' => 'cqu',
		'AUR62042653' => 'cqu',
		'AUR62043025' => 'cqu',
		'AUR62043026' => 'cqu',
		'AUR62043063' => 'cqu',
		'AUR62043091' => 'cqu',
		'AUR62043320' => 'cqu',
		'BolC5t32558H' => 'bol',
		'CAN.G1036.12' => 'can',
		'CAN.G1432.23' => 'can',
		'CAN.G159.19' => 'can',
		'CAN.G4114.1' => 'can',
		'CAN.G492.85' => 'can',
		'CAN.G500.95' => 'can',
		'CAN.G93.31' => 'can',
		'CiPaw.04G054900' => 'cil',
		'CiPaw.05G045400' => 'cil',
		'CiPaw.15G094100' => 'cil',
		'ClCG00G000700' => 'cla',
		'ClCG00G000780' => 'cla',
		'ClCG01G012280' => 'cla',
		'ClCG02G006140' => 'cla',
		'ClCG02G009810' => 'cla',
		'ClCG03G010170' => 'cla',
		'ClCG03G010260' => 'cla',
		'ClCG04G000770' => 'cla',
		'ClCG05G013980' => 'cla',
		'ClCG06G009110' => 'cla',
		'ClCG06G009120' => 'cla',
		'ClCG08G002190' => 'cla',
		'ClCG09G013830' => 'cla',
		'ClCG10G006760' => 'cla',
		'ClCG11G007310' => 'cla',
		'COL.COLO4_16141' => 'col',
		'Cpa.g.sc202.2' => 'cpa',
		'Cpa.g.sc76.18' => 'cpa',
		'CsaV3_1G031080' => 'csa',
		'CsaV3_4G011870' => 'csa',
		'CsaV3_4G014860' => 'csa',
		'CsaV3_4G021860' => 'csa',
		'CsaV3_6G009880' => 'csa',
		'CsaV3_7G021240' => 'csa',
		'CsaV3_UNG240600' => 'csa',
		'CSS0003516' => 'camsi',
		'CSS0013023' => 'camsi',
		'CSS0017680' => 'camsi',
		'CSS0018551' => 'camsi',
		'CSS0026792' => 'camsi',
		'CSS0028271' => 'camsi',
		'CSS0033603' => 'camsi',
		'CSS0040789' => 'camsi',
		'CSS0045068' => 'camsi',
		'CSS0045803' => 'camsi',
		'Dinv10528' => 'din',
		'Duzib116G0875' => 'dzi',
		'Duzib128G0055' => 'dzi',
		'EL10Ac1g02377' => 'bvu',
		'EL10Ac1g02378' => 'bvu',
		'EL10Ac2g03486' => 'bvu',
		'EL10Ac2g03487' => 'bvu',
		'EL10Ac3g05722' => 'bvu',
		'EL10Ac3g06186' => 'bvu',
		'EL10Ac5g11258' => 'bvu',
		'EL10Ac6g13831' => 'bvu',
		'EL10Ac6g14162' => 'bvu',
		'EL10Ac6g14316' => 'bvu',
		'EL10Ac6g14317' => 'bvu',
		'EL10Ac6g14588' => 'bvu',
		'EL10Ac7g16302' => 'bvu',
		'EL10Ac7g16543' => 'bvu',
		'EL10Ac8g18762' => 'bvu',
		'EL10Ac9g20847' => 'bvu',
		'EL10As7g23731' => 'bvu',
		'EL10As7g23732' => 'bvu',
		'FvH4_1g23713' => 'fve',
		'FvH4_2g00261' => 'fve',
		'FvH4_2g00262' => 'fve',
		'FvH4_2g15681' => 'fve',
		'FvH4_2g17851' => 'fve',
		'FvH4_3g10531' => 'fve',
		'FvH4_3g33536' => 'fve',
		'FvH4_4g03471' => 'fve',
		'FvH4_4g19351' => 'fve',
		'FvH4_4g34281' => 'fve',
		'FvH4_5g03811' => 'fve',
		'FvH4_5g03812' => 'fve',
		'FvH4_5g11822' => 'fve',
		'FvH4_5g31701' => 'fve',
		'FvH4_6g12161' => 'fve',
		'FvH4_6g15222' => 'fve',
		'FvH4_6g15223' => 'fve',
		'FvH4_6g19301' => 'fve',
		'FvH4_6g33011' => 'fve',
		'FvH4_6g50161' => 'fve',
		'FvH4_7g04123' => 'fve',
		'FvH4_c7g00010' => 'fve',
		'Gorai.012G165300' => 'gra',
		'HanXRQChr00c0452g0574871' => 'han',
		'HanXRQChr01g0029471' => 'han',
		'HanXRQChr05g0133501' => 'han',
		'HanXRQChr10g0280141' => 'han',
		'HanXRQChr10g0280631' => 'han',
		'HanXRQChr13g0409991' => 'han',
		'HanXRQChr15g0468361' => 'han',
		'Hma1.2p1_0021F.1_g014270' => 'hma',
		'Hma1.2p1_0026F.1_g016730' => 'hma',
		'Hma1.2p1_0177F.1_g077930' => 'hma',
		'Hma1.2p1_0370F.1_g137540' => 'hma',
		'Hma1.2p1_0637F.1_g193600' => 'hma',
		'Hma1.2p1_1045F.1_g251360' => 'hma',
		'Hma1.2p1_1168F.1_g263120' => 'hma',
		'Hma1.2p1_1640F.1_g295040' => 'hma',
		'Hma1.2p1_2467F.1_g322660' => 'hma',
		'Hund01785' => 'sun',
		'Hund04739' => 'sun',
		'Hund07717' => 'sun',
		'Hund08060' => 'sun',
		'Hund08734' => 'sun',
		'Hund10876' => 'sun',
		'Hund14991' => 'sun',
		'Hund15051' => 'sun',
		'Hund15082' => 'sun',
		'Hund17998' => 'sun',
		'Hund18526' => 'sun',
		'Hund19828' => 'sun',
		'Hund23384' => 'sun',
		'Hund26399' => 'sun',
		'Hund28766' => 'sun',
		'Hund28768' => 'sun',
		'Lj1A487G33' => 'lonja',
		'Lj1A487G34' => 'lonja',
		'Lj1A489G15' => 'lonja',
		'Lj1C1113T3' => 'lonja',
		'Lj1C3T4' => 'lonja',
		'Lj1C763G4' => 'lonja',
		'Lj1P195T27' => 'lonja',
		'Lj1P573T13' => 'lonja',
		'Lj1P895T45' => 'lonja',
		'Lj1P995G28' => 'lonja',
		'Lj2A1125G46' => 'lonja',
		'Lj2C116T7' => 'lonja',
		'Lj2P295T30' => 'lonja',
		'Lj2P476T23' => 'lonja',
		'Lj2P603T27' => 'lonja',
		'Lj2P609T17' => 'lonja',
		'Lj2P727T24' => 'lonja',
		'Lj3C273T2' => 'lonja',
		'Lj3C644G3' => 'lonja',
		'Lj3C644G4' => 'lonja',
		'Lj3P463T4' => 'lonja',
		'Lj3P545T31' => 'lonja',
		'Lj3P820T55' => 'lonja',
		'Lj4C260T12' => 'lonja',
		'Lj4C714G8' => 'lonja',
		'Lj4P131T14' => 'lonja',
		'Lj4P131T15' => 'lonja',
		'Lj5C102G24' => 'lonja',
		'Lj5P491T3' => 'lonja',
		'Lj5P564T12' => 'lonja',
		'Lj5P786T11' => 'lonja',
		'Lj6C97T3' => 'lonja',
		'Lj8P523T19' => 'lonja',
		'Lj9A24G30' => 'lonja',
		'Lj9A424G33' => 'lonja',
		'Lj9C219G10' => 'lonja',
		'Lj9P219T12' => 'lonja',
		'Lj9P705T22' => 'lonja',
		'Lju114C4T7' => 'lonja',
		'Lju1220C5G5' => 'lonja',
		'Lju2092C1G1' => 'lonja',
		'Lju2092C1T0' => 'lonja',
		'Lju225C6G6' => 'lonja',
		'Lju427C2T0' => 'lonja',
		'Lju50C9T4' => 'lonja',
		'Lju926C12T2' => 'lonja',
		'Manes.06G126602' => 'mes',
		'Manes.13G002614' => 'mes',
		'Manes.15G192966' => 'mes',
		'Manes.17G001483' => 'mes',
		'Manes.17G022547' => 'mes',
		'Manes.18G042825' => 'mes',
		'Manes.S026816' => 'mes',
		'Manes.S027416' => 'mes',
		'MBI02_g15234_MAGBIO' => 'mbi',
		'MBI16_g35584_MAGBIO' => 'mbi',
		'MELO3C008948.2' => 'cme',
		'MELO3C010395.2' => 'cme',
		'MELO3C010396.2' => 'cme',
		'MELO3C015759.2' => 'cme',
		'MELO3C022607.2' => 'cme',
		'MELO3C028897.2' => 'cme',
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		'Sopen12g019150' => 'spe',
		'Sopen12g020560' => 'spe',
		'Sopen12g023320' => 'spe',
		'Sp3g24190' => 'spa',
		'Sp4g07270' => 'spa',
		'Sp4g07530' => 'spa',
		'Sp4g07670' => 'spa',
		'Sp6g09360' => 'spa',
		'Sp7g04180' => 'spa',
		'Sp7g04980' => 'spa',
		'Sp7g08200' => 'spa',
		'Sp7g09660' => 'spa',
		'SpUn0081_0010' => 'spa',
		'THA.LOC104803417' => 'tha',
		'THA.LOC104817059' => 'tha',
		'Thecc.01G188700' => 'tca',
		'Thecc.05G106700' => 'tca',
		'Thecc.06G068800' => 'tca',
		'Thecc.07G189100' => 'tca',
		'Thecc.09G172800' => 'tca',
		'Thhalv10023044m.g' => 'esa',
		'Thhalv10023881m.g' => 'esa',
		'Thhalv10024067m.g' => 'esa'
	),
	'gf_id' => 'HOM05D000691',
	'gf_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'gf_types_configuration' => array(
		'HOMFAM' => array(
			'order' => '1',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		),
		'ORTHOFAM' => array(
			'order' => '2',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		)
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'allow_async_use' => true,
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D000691'
	),
	'data_identifier' => 'HOM05D000691',
	'data_type' => 'gf_id'
)
$sidebar_info = array(
	'gf_id' => 'HOM05D000691',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '827',
	'num_species' => '39'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$gf_genes = array(
	'Ah.01g012340' => 'amhyb',
	'Ah.01g013530' => 'amhyb',
	'Ah.03g143080' => 'amhyb',
	'Ah.06g186750' => 'amhyb',
	'Ah.06g186800' => 'amhyb',
	'Ah.07g200050' => 'amhyb',
	'Ah.08g209110' => 'amhyb',
	'Ah.09g229600' => 'amhyb',
	'Ah.09g229610' => 'amhyb',
	'Ah.10g026490' => 'amhyb',
	'Ah.12g065350' => 'amhyb',
	'Ah.13g069310' => 'amhyb',
	'Ah.14g080130' => 'amhyb',
	'Ah.14g081130' => 'amhyb',
	'Ah.14g081140' => 'amhyb',
	'Ah.16g109160' => 'amhyb',
	'Ah.16g109170' => 'amhyb',
	'Ah.16g109370' => 'amhyb',
	'AL3G47720' => 'aly',
	'ATR0012G060' => 'atr',
	'ATR0026G029' => 'atr',
	'ATR0193G043' => 'atr',
	'ATR0561G076' => 'atr',
	'ATR0561G181' => 'atr',
	'ATR0568G014' => 'atr',
	'ATR0568G114' => 'atr',
	'ATR0620G039' => 'atr',
	'ATR0629G125' => 'atr',
	'ATR0661G583' => 'atr',
	'ATR0686G019' => 'atr',
	'ATR0693G232' => 'atr',
	'ATR0697G104' => 'atr',
	'ATR0789G146' => 'atr',
	'ATR0794G066' => 'atr',
	'ATR1127G127' => 'atr',
	'ATR1131G040' => 'atr',
	'ATR1134G004' => 'atr',
	'ATR1134G095' => 'atr',
	'ATR1152G110' => 'atr',
	'ATR1153G065' => 'atr',
	'Atru.chr3.2296' => 'acertr',
	'AUR62000692' => 'cqu',
	'AUR62001473' => 'cqu',
	'AUR62001812' => 'cqu',
	'AUR62002706' => 'cqu',
	'AUR62003904' => 'cqu',
	'AUR62003905' => 'cqu',
	'AUR62004840' => 'cqu',
	'AUR62005160' => 'cqu',
	'AUR62005604' => 'cqu',
	'AUR62005891' => 'cqu',
	'AUR62007290' => 'cqu',
	'AUR62007502' => 'cqu',
	'AUR62007923' => 'cqu',
	'AUR62009972' => 'cqu',
	'AUR62010488' => 'cqu',
	'AUR62010643' => 'cqu',
	'AUR62012637' => 'cqu',
	'AUR62013492' => 'cqu',
	'AUR62014239' => 'cqu',
	'AUR62014878' => 'cqu',
	'AUR62015857' => 'cqu',
	'AUR62016224' => 'cqu',
	'AUR62017430' => 'cqu',
	'AUR62017467' => 'cqu',
	'AUR62018234' => 'cqu',
	'AUR62019060' => 'cqu',
	'AUR62019607' => 'cqu',
	'AUR62019661' => 'cqu',
	'AUR62022775' => 'cqu',
	'AUR62023603' => 'cqu',
	'AUR62024563' => 'cqu',
	'AUR62026199' => 'cqu',
	'AUR62026905' => 'cqu',
	'AUR62028639' => 'cqu',
	'AUR62029168' => 'cqu',
	'AUR62029551' => 'cqu',
	'AUR62029860' => 'cqu',
	'AUR62030164' => 'cqu',
	'AUR62031208' => 'cqu',
	'AUR62031287' => 'cqu',
	'AUR62031817' => 'cqu',
	'AUR62032126' => 'cqu',
	'AUR62032358' => 'cqu',
	'AUR62032884' => 'cqu',
	'AUR62032892' => 'cqu',
	'AUR62033082' => 'cqu',
	'AUR62033100' => 'cqu',
	'AUR62033255' => 'cqu',
	'AUR62033698' => 'cqu',
	'AUR62033757' => 'cqu',
	'AUR62034760' => 'cqu',
	'AUR62034860' => 'cqu',
	'AUR62035179' => 'cqu',
	'AUR62035881' => 'cqu',
	'AUR62036824' => 'cqu',
	'AUR62036876' => 'cqu',
	'AUR62037319' => 'cqu',
	'AUR62037362' => 'cqu',
	'AUR62037541' => 'cqu',
	'AUR62037853' => 'cqu',
	'AUR62038299' => 'cqu',
	'AUR62038563' => 'cqu',
	'AUR62038564' => 'cqu',
	'AUR62038594' => 'cqu',
	'AUR62038792' => 'cqu',
	'AUR62038947' => 'cqu',
	'AUR62039030' => 'cqu',
	'AUR62039231' => 'cqu',
	'AUR62039452' => 'cqu',
	'AUR62040334' => 'cqu',
	'AUR62040869' => 'cqu',
	'AUR62040870' => 'cqu',
	'AUR62040916' => 'cqu',
	'AUR62041199' => 'cqu',
	'AUR62041334' => 'cqu',
	'AUR62041608' => 'cqu',
	'AUR62041609' => 'cqu',
	'AUR62041833' => 'cqu',
	'AUR62041834' => 'cqu',
	'AUR62042054' => 'cqu',
	'AUR62042134' => 'cqu',
	'AUR62042236' => 'cqu',
	'AUR62042281' => 'cqu',
	'AUR62042593' => 'cqu',
	'AUR62042653' => 'cqu',
	'AUR62043025' => 'cqu',
	'AUR62043026' => 'cqu',
	'AUR62043063' => 'cqu',
	'AUR62043091' => 'cqu',
	'AUR62043320' => 'cqu',
	'BolC5t32558H' => 'bol',
	'CAN.G1036.12' => 'can',
	'CAN.G1432.23' => 'can',
	'CAN.G159.19' => 'can',
	'CAN.G4114.1' => 'can',
	'CAN.G492.85' => 'can',
	'CAN.G500.95' => 'can',
	'CAN.G93.31' => 'can',
	'CiPaw.04G054900' => 'cil',
	'CiPaw.05G045400' => 'cil',
	'CiPaw.15G094100' => 'cil',
	'ClCG00G000700' => 'cla',
	'ClCG00G000780' => 'cla',
	'ClCG01G012280' => 'cla',
	'ClCG02G006140' => 'cla',
	'ClCG02G009810' => 'cla',
	'ClCG03G010170' => 'cla',
	'ClCG03G010260' => 'cla',
	'ClCG04G000770' => 'cla',
	'ClCG05G013980' => 'cla',
	'ClCG06G009110' => 'cla',
	'ClCG06G009120' => 'cla',
	'ClCG08G002190' => 'cla',
	'ClCG09G013830' => 'cla',
	'ClCG10G006760' => 'cla',
	'ClCG11G007310' => 'cla',
	'COL.COLO4_16141' => 'col',
	'Cpa.g.sc202.2' => 'cpa',
	'Cpa.g.sc76.18' => 'cpa',
	'CsaV3_1G031080' => 'csa',
	'CsaV3_4G011870' => 'csa',
	'CsaV3_4G014860' => 'csa',
	'CsaV3_4G021860' => 'csa',
	'CsaV3_6G009880' => 'csa',
	'CsaV3_7G021240' => 'csa',
	'CsaV3_UNG240600' => 'csa',
	'CSS0003516' => 'camsi',
	'CSS0013023' => 'camsi',
	'CSS0017680' => 'camsi',
	'CSS0018551' => 'camsi',
	'CSS0026792' => 'camsi',
	'CSS0028271' => 'camsi',
	'CSS0033603' => 'camsi',
	'CSS0040789' => 'camsi',
	'CSS0045068' => 'camsi',
	'CSS0045803' => 'camsi',
	'Dinv10528' => 'din',
	'Duzib116G0875' => 'dzi',
	'Duzib128G0055' => 'dzi',
	'EL10Ac1g02377' => 'bvu',
	'EL10Ac1g02378' => 'bvu',
	'EL10Ac2g03486' => 'bvu',
	'EL10Ac2g03487' => 'bvu',
	'EL10Ac3g05722' => 'bvu',
	'EL10Ac3g06186' => 'bvu',
	'EL10Ac5g11258' => 'bvu',
	'EL10Ac6g13831' => 'bvu',
	'EL10Ac6g14162' => 'bvu',
	'EL10Ac6g14316' => 'bvu',
	'EL10Ac6g14317' => 'bvu',
	'EL10Ac6g14588' => 'bvu',
	'EL10Ac7g16302' => 'bvu',
	'EL10Ac7g16543' => 'bvu',
	'EL10Ac8g18762' => 'bvu',
	'EL10Ac9g20847' => 'bvu',
	'EL10As7g23731' => 'bvu',
	'EL10As7g23732' => 'bvu',
	'FvH4_1g23713' => 'fve',
	'FvH4_2g00261' => 'fve',
	'FvH4_2g00262' => 'fve',
	'FvH4_2g15681' => 'fve',
	'FvH4_2g17851' => 'fve',
	'FvH4_3g10531' => 'fve',
	'FvH4_3g33536' => 'fve',
	'FvH4_4g03471' => 'fve',
	'FvH4_4g19351' => 'fve',
	'FvH4_4g34281' => 'fve',
	'FvH4_5g03811' => 'fve',
	'FvH4_5g03812' => 'fve',
	'FvH4_5g11822' => 'fve',
	'FvH4_5g31701' => 'fve',
	'FvH4_6g12161' => 'fve',
	'FvH4_6g15222' => 'fve',
	'FvH4_6g15223' => 'fve',
	'FvH4_6g19301' => 'fve',
	'FvH4_6g33011' => 'fve',
	'FvH4_6g50161' => 'fve',
	'FvH4_7g04123' => 'fve',
	'FvH4_c7g00010' => 'fve',
	'Gorai.012G165300' => 'gra',
	'HanXRQChr00c0452g0574871' => 'han',
	'HanXRQChr01g0029471' => 'han',
	'HanXRQChr05g0133501' => 'han',
	'HanXRQChr10g0280141' => 'han',
	'HanXRQChr10g0280631' => 'han',
	'HanXRQChr13g0409991' => 'han',
	'HanXRQChr15g0468361' => 'han',
	'Hma1.2p1_0021F.1_g014270' => 'hma',
	'Hma1.2p1_0026F.1_g016730' => 'hma',
	'Hma1.2p1_0177F.1_g077930' => 'hma',
	'Hma1.2p1_0370F.1_g137540' => 'hma',
	'Hma1.2p1_0637F.1_g193600' => 'hma',
	'Hma1.2p1_1045F.1_g251360' => 'hma',
	'Hma1.2p1_1168F.1_g263120' => 'hma',
	'Hma1.2p1_1640F.1_g295040' => 'hma',
	'Hma1.2p1_2467F.1_g322660' => 'hma',
	'Hund01785' => 'sun',
	'Hund04739' => 'sun',
	'Hund07717' => 'sun',
	'Hund08060' => 'sun',
	'Hund08734' => 'sun',
	'Hund10876' => 'sun',
	'Hund14991' => 'sun',
	'Hund15051' => 'sun',
	'Hund15082' => 'sun',
	'Hund17998' => 'sun',
	'Hund18526' => 'sun',
	'Hund19828' => 'sun',
	'Hund23384' => 'sun',
	'Hund26399' => 'sun',
	'Hund28766' => 'sun',
	'Hund28768' => 'sun',
	'Lj1A487G33' => 'lonja',
	'Lj1A487G34' => 'lonja',
	'Lj1A489G15' => 'lonja',
	'Lj1C1113T3' => 'lonja',
	'Lj1C3T4' => 'lonja',
	'Lj1C763G4' => 'lonja',
	'Lj1P195T27' => 'lonja',
	'Lj1P573T13' => 'lonja',
	'Lj1P895T45' => 'lonja',
	'Lj1P995G28' => 'lonja',
	'Lj2A1125G46' => 'lonja',
	'Lj2C116T7' => 'lonja',
	'Lj2P295T30' => 'lonja',
	'Lj2P476T23' => 'lonja',
	'Lj2P603T27' => 'lonja',
	'Lj2P609T17' => 'lonja',
	'Lj2P727T24' => 'lonja',
	'Lj3C273T2' => 'lonja',
	'Lj3C644G3' => 'lonja',
	'Lj3C644G4' => 'lonja',
	'Lj3P463T4' => 'lonja',
	'Lj3P545T31' => 'lonja',
	'Lj3P820T55' => 'lonja',
	'Lj4C260T12' => 'lonja',
	'Lj4C714G8' => 'lonja',
	'Lj4P131T14' => 'lonja',
	'Lj4P131T15' => 'lonja',
	'Lj5C102G24' => 'lonja',
	'Lj5P491T3' => 'lonja',
	'Lj5P564T12' => 'lonja',
	'Lj5P786T11' => 'lonja',
	'Lj6C97T3' => 'lonja',
	'Lj8P523T19' => 'lonja',
	'Lj9A24G30' => 'lonja',
	'Lj9A424G33' => 'lonja',
	'Lj9C219G10' => 'lonja',
	'Lj9P219T12' => 'lonja',
	'Lj9P705T22' => 'lonja',
	'Lju114C4T7' => 'lonja',
	'Lju1220C5G5' => 'lonja',
	'Lju2092C1G1' => 'lonja',
	'Lju2092C1T0' => 'lonja',
	'Lju225C6G6' => 'lonja',
	'Lju427C2T0' => 'lonja',
	'Lju50C9T4' => 'lonja',
	'Lju926C12T2' => 'lonja',
	'Manes.06G126602' => 'mes',
	'Manes.13G002614' => 'mes',
	'Manes.15G192966' => 'mes',
	'Manes.17G001483' => 'mes',
	'Manes.17G022547' => 'mes',
	'Manes.18G042825' => 'mes',
	'Manes.S026816' => 'mes',
	'Manes.S027416' => 'mes',
	'MBI02_g15234_MAGBIO' => 'mbi',
	'MBI16_g35584_MAGBIO' => 'mbi',
	'MELO3C008948.2' => 'cme',
	'MELO3C010395.2' => 'cme',
	'MELO3C010396.2' => 'cme',
	'MELO3C015759.2' => 'cme',
	'MELO3C022607.2' => 'cme',
	'MELO3C028897.2' => 'cme',
	'Oeu000188.1' => 'oeu',
	'Oeu002226.1' => 'oeu',
	'Oeu003087.1' => 'oeu',
	'Oeu003392.1' => 'oeu',
	'Oeu003523.1' => 'oeu',
	'Oeu003524.1' => 'oeu',
	'Oeu003528.1' => 'oeu',
	'Oeu003547.2' => 'oeu',
	'Oeu004677.1' => 'oeu',
	'Oeu005362.1' => 'oeu',
	'Oeu005833.1' => 'oeu',
	'Oeu005834.1' => 'oeu',
	'Oeu006751.1' => 'oeu',
	'Oeu007084.1' => 'oeu',
	'Oeu007264.1' => 'oeu',
	'Oeu008153.1' => 'oeu',
	'Oeu008228.1' => 'oeu',
	'Oeu008229.1' => 'oeu',
	'Oeu009580.1' => 'oeu',
	'Oeu010110.1' => 'oeu',
	'Oeu011704.1' => 'oeu',
	'Oeu011912.1' => 'oeu',
	'Oeu012057.1' => 'oeu',
	'Oeu012157.1' => 'oeu',
	'Oeu013775.1' => 'oeu',
	'Oeu013806.1' => 'oeu',
	'Oeu016457.1' => 'oeu',
	'Oeu016803.1' => 'oeu',
	'Oeu017243.2' => 'oeu',
	'Oeu017935.1' => 'oeu',
	'Oeu020246.2' => 'oeu',
	'Oeu020990.1' => 'oeu',
	'Oeu021941.1' => 'oeu',
	'Oeu021986.1' => 'oeu',
	'Oeu023578.1' => 'oeu',
	'Oeu024242.1' => 'oeu',
	'Oeu025087.1' => 'oeu',
	'Oeu025093.1' => 'oeu',
	'Oeu025412.1' => 'oeu',
	'Oeu025520.1' => 'oeu',
	'Oeu026473.1' => 'oeu',
	'Oeu027505.1' => 'oeu',
	'Oeu027530.1' => 'oeu',
	'Oeu027794.2' => 'oeu',
	'Oeu028951.1' => 'oeu',
	'Oeu029141.1' => 'oeu',
	'Oeu029231.4' => 'oeu',
	'Oeu029388.1' => 'oeu',
	'Oeu029673.1' => 'oeu',
	'Oeu029674.1' => 'oeu',
	'Oeu029748.1' => 'oeu',
	'Oeu030224.1' => 'oeu',
	'Oeu030243.1' => 'oeu',
	'Oeu030253.1' => 'oeu',
	'Oeu030414.1' => 'oeu',
	'Oeu030415.1' => 'oeu',
	'Oeu030472.1' => 'oeu',
	'Oeu031432.1' => 'oeu',
	'Oeu031697.1' => 'oeu',
	'Oeu032030.1' => 'oeu',
	'Oeu032031.1' => 'oeu',
	'Oeu032075.1' => 'oeu',
	'Oeu032737.1' => 'oeu',
	'Oeu033407.1' => 'oeu',
	'Oeu033485.1' => 'oeu',
	'Oeu034465.1' => 'oeu',
	'Oeu034951.1' => 'oeu',
	'Oeu036281.1' => 'oeu',
	'Oeu036931.1' => 'oeu',
	'Oeu036932.1' => 'oeu',
	'Oeu037340.1' => 'oeu',
	'Oeu037611.1' => 'oeu',
	'Oeu039205.1' => 'oeu',
	'Oeu039325.1' => 'oeu',
	'Oeu040999.1' => 'oeu',
	'Oeu041244.1' => 'oeu',
	'Oeu041682.1' => 'oeu',
	'Oeu041863.1' => 'oeu',
	'Oeu042345.1' => 'oeu',
	'Oeu042346.1' => 'oeu',
	'Oeu042671.1' => 'oeu',
	'Oeu043273.1' => 'oeu',
	'Oeu043573.1' => 'oeu',
	'Oeu044071.1' => 'oeu',
	'Oeu046813.1' => 'oeu',
	'Oeu048160.1' => 'oeu',
	'Oeu048162.1' => 'oeu',
	'Oeu048282.1' => 'oeu',
	'Oeu048297.1' => 'oeu',
	'Oeu048360.1' => 'oeu',
	'Oeu048565.1' => 'oeu',
	'Oeu049268.1' => 'oeu',
	'Oeu049465.1' => 'oeu',
	'Oeu049978.1' => 'oeu',
	'Oeu050628.1' => 'oeu',
	'Oeu050727.1' => 'oeu',
	'Oeu052065.1' => 'oeu',
	'Oeu052582.1' => 'oeu',
	'Oeu053090.1' => 'oeu',
	'Oeu053644.1' => 'oeu',
	'Oeu053713.1' => 'oeu',
	'Oeu055027.1' => 'oeu',
	'Oeu057741.1' => 'oeu',
	'Oeu058973.1' => 'oeu',
	'Oeu060366.1' => 'oeu',
	'Oeu061428.1' => 'oeu',
	'Oeu062087.1' => 'oeu',
	'Oeu062537.1' => 'oeu',
	'Oeu062538.1' => 'oeu',
	'Oeu064387.1' => 'oeu',
	'PGSC0003DMG400002344' => 'stu',
	'PGSC0003DMG400004046' => 'stu',
	'PGSC0003DMG400006418' => 'stu',
	'PGSC0003DMG400008410' => 'stu',
	'PGSC0003DMG400008620' => 'stu',
	'PGSC0003DMG400009504' => 'stu',
	'PGSC0003DMG400009845' => 'stu',
	'PGSC0003DMG400011177' => 'stu',
	'PGSC0003DMG400011629' => 'stu',
	'PGSC0003DMG400013586' => 'stu',
	'PGSC0003DMG400013599' => 'stu',
	'PGSC0003DMG400014534' => 'stu',
	'PGSC0003DMG400016055' => 'stu',
	'PGSC0003DMG400016736' => 'stu',
	'PGSC0003DMG400016866' => 'stu',
	'PGSC0003DMG400017701' => 'stu',
	'PGSC0003DMG400018448' => 'stu',
	'PGSC0003DMG400020751' => 'stu',
	'PGSC0003DMG400021088' => 'stu',
	'PGSC0003DMG400021387' => 'stu',
	'PGSC0003DMG400021640' => 'stu',
	'PGSC0003DMG400021704' => 'stu',
	'PGSC0003DMG400022155' => 'stu',
	'PGSC0003DMG400023544' => 'stu',
	'PGSC0003DMG400023564' => 'stu',
	'PGSC0003DMG400028558' => 'stu',
	'PGSC0003DMG400028618' => 'stu',
	'PGSC0003DMG400029149' => 'stu',
	'PGSC0003DMG400029979' => 'stu',
	'PGSC0003DMG400030069' => 'stu',
	'PGSC0003DMG400031272' => 'stu',
	'PGSC0003DMG400034656' => 'stu',
	'PGSC0003DMG400035151' => 'stu',
	'PGSC0003DMG400035741' => 'stu',
	'PGSC0003DMG400036100' => 'stu',
	'PGSC0003DMG400037683' => 'stu',
	'PGSC0003DMG400038046' => 'stu',
	'PGSC0003DMG400040121' => 'stu',
	'PGSC0003DMG400042113' => 'stu',
	'PGSC0003DMG400042218' => 'stu',
	'PGSC0003DMG400044188' => 'stu',
	'PGSC0003DMG400044323' => 'stu',
	'PGSC0003DMG400045014' => 'stu',
	'PGSC0003DMG400045177' => 'stu',
	'PGSC0003DMG400047199' => 'stu',
	'Potri.017G071366' => 'ptr',
	'RcHm_v2.0_Chr2g0137481' => 'rch',
	'Sc20g0003180' => 'sci',
	'SEGI_00305' => 'sgi',
	'SEGI_02246' => 'sgi',
	'SEGI_03696' => 'sgi',
	'SEGI_05490' => 'sgi',
	'SEGI_05682' => 'sgi',
	'SEGI_05900' => 'sgi',
	'SEGI_06517' => 'sgi',
	'SEGI_12587' => 'sgi',
	'SEGI_13129' => 'sgi',
	'SEGI_16935' => 'sgi',
	'SEGI_18008' => 'sgi',
	'SEGI_18224' => 'sgi',
	'SEGI_20188' => 'sgi',
	'SEGI_20772' => 'sgi',
	'SEGI_20842' => 'sgi',
	'SEGI_22270' => 'sgi',
	'SEGI_22705' => 'sgi',
	'SEGI_23638' => 'sgi',
	'SEGI_23928' => 'sgi',
	'SEGI_24790' => 'sgi',
	'SEGI_28421' => 'sgi',
	'SEGI_28832' => 'sgi',
	'SEGI_29884' => 'sgi',
	'SEGI_30829' => 'sgi',
	'SEGI_35046' => 'sgi',
	'SEGI_35582' => 'sgi',
	'SEGI_37882' => 'sgi',
	'SEGI_39680' => 'sgi',
	'SEGI_40069' => 'sgi',
	'SEGI_40087' => 'sgi',
	'SEGI_41606' => 'sgi',
	'SGA_v2.0_scaffold50G18578' => 'sas',
	'SHI00293' => 'shi',
	'SHI00389' => 'shi',
	'SHI00445' => 'shi',
	'SHI01000' => 'shi',
	'SHI01503' => 'shi',
	'SHI01718' => 'shi',
	'SHI03454' => 'shi',
	'SHI03493' => 'shi',
	'SHI03494' => 'shi',
	'SHI03628' => 'shi',
	'SHI04457' => 'shi',
	'SHI04691' => 'shi',
	'SHI04829' => 'shi',
	'SHI05225' => 'shi',
	'SHI06326' => 'shi',
	'SHI06505' => 'shi',
	'SHI06770' => 'shi',
	'SHI07388' => 'shi',
	'SHI07582' => 'shi',
	'SHI07583' => 'shi',
	'SHI08271' => 'shi',
	'SHI10619' => 'shi',
	'SHI10892' => 'shi',
	'SHI10910' => 'shi',
	'SHI10911' => 'shi',
	'SHI14326' => 'shi',
	'SHI14681' => 'shi',
	'SHI15017' => 'shi',
	'SHI15096' => 'shi',
	'SHI15120' => 'shi',
	'SHI15274' => 'shi',
	'SHI16232' => 'shi',
	'SHI16811' => 'shi',
	'SHI17386' => 'shi',
	'SHI17926' => 'shi',
	'SHI18293' => 'shi',
	'SHI20489' => 'shi',
	'SHI20658' => 'shi',
	'SHI20663' => 'shi',
	'SHI21566' => 'shi',
	'SHI22547' => 'shi',
	'SHI22708' => 'shi',
	'SHI22709' => 'shi',
	'SHI22878' => 'shi',
	'SHI22879' => 'shi',
	'SHI23024' => 'shi',
	'SHI25053' => 'shi',
	'SHI25076' => 'shi',
	'SHI25116' => 'shi',
	'SHI25381' => 'shi',
	'SHI25535' => 'shi',
	'SHI25740' => 'shi',
	'SHI25991' => 'shi',
	'SHI26344' => 'shi',
	'SHI26345' => 'shi',
	'SHI27097' => 'shi',
	'SHI27140' => 'shi',
	'SHI27178' => 'shi',
	'SHI27207' => 'shi',
	'SHI27225' => 'shi',
	'SHI27734' => 'shi',
	'SHI27806' => 'shi',
	'SHI28576' => 'shi',
	'SHI29081' => 'shi',
	'SHI30038' => 'shi',
	'SHI30394' => 'shi',
	'SHI30652' => 'shi',
	'SHI32154' => 'shi',
	'SHI32205' => 'shi',
	'SHI32365' => 'shi',
	'SHI32439' => 'shi',
	'SHI32505' => 'shi',
	'SHI32626' => 'shi',
	'SHI32714' => 'shi',
	'SHI32715' => 'shi',
	'SHI32716' => 'shi',
	'SHI33118' => 'shi',
	'SHI33318' => 'shi',
	'SHI33373' => 'shi',
	'SHI33512' => 'shi',
	'SHI33625' => 'shi',
	'SHI34327' => 'shi',
	'SHI35604' => 'shi',
	'SHI36119' => 'shi',
	'SHI36120' => 'shi',
	'SHI44959' => 'shi',
	'SHI46406' => 'shi',
	'SHI48191' => 'shi',
	'SHI48192' => 'shi',
	'Solyc10g150111.1' => 'sly',
	'Solyc12g062340.2' => 'sly',
	'Sopen00g001750' => 'spe',
	'Sopen00g001820' => 'spe',
	'Sopen00g001830' => 'spe',
	'Sopen00g001890' => 'spe',
	'Sopen00g002240' => 'spe',
	'Sopen00g003950' => 'spe',
	'Sopen00g004130' => 'spe',
	'Sopen00g004810' => 'spe',
	'Sopen00g005120' => 'spe',
	'Sopen00g005190' => 'spe',
	'Sopen00g007000' => 'spe',
	'Sopen00g007210' => 'spe',
	'Sopen00g012840' => 'spe',
	'Sopen00g013060' => 'spe',
	'Sopen00g013610' => 'spe',
	'Sopen00g013630' => 'spe',
	'Sopen01g004610' => 'spe',
	'Sopen01g007660' => 'spe',
	'Sopen01g007750' => 'spe',
	'Sopen01g007760' => 'spe',
	'Sopen01g007770' => 'spe',
	'Sopen01g007860' => 'spe',
	'Sopen01g009130' => 'spe',
	'Sopen01g009820' => 'spe',
	'Sopen01g011240' => 'spe',
	'Sopen01g012740' => 'spe',
	'Sopen01g013840' => 'spe',
	'Sopen01g013850' => 'spe',
	'Sopen01g016140' => 'spe',
	'Sopen01g016150' => 'spe',
	'Sopen01g016830' => 'spe',
	'Sopen01g017260' => 'spe',
	'Sopen01g019000' => 'spe',
	'Sopen01g019690' => 'spe',
	'Sopen01g022160' => 'spe',
	'Sopen01g024000' => 'spe',
	'Sopen01g024670' => 'spe',
	'Sopen01g024770' => 'spe',
	'Sopen01g024900' => 'spe',
	'Sopen01g025130' => 'spe',
	'Sopen01g026370' => 'spe',
	'Sopen01g041640' => 'spe',
	'Sopen01g046930' => 'spe',
	'Sopen02g001360' => 'spe',
	'Sopen02g002010' => 'spe',
	'Sopen02g003600' => 'spe',
	'Sopen02g003730' => 'spe',
	'Sopen02g005430' => 'spe',
	'Sopen02g005510' => 'spe',
	'Sopen02g006840' => 'spe',
	'Sopen02g007390' => 'spe',
	'Sopen02g007420' => 'spe',
	'Sopen02g007540' => 'spe',
	'Sopen02g007920' => 'spe',
	'Sopen02g008960' => 'spe',
	'Sopen02g009450' => 'spe',
	'Sopen02g009460' => 'spe',
	'Sopen02g011320' => 'spe',
	'Sopen02g012680' => 'spe',
	'Sopen02g018090' => 'spe',
	'Sopen02g022140' => 'spe',
	'Sopen03g010330' => 'spe',
	'Sopen03g013130' => 'spe',
	'Sopen03g013180' => 'spe',
	'Sopen03g013230' => 'spe',
	'Sopen03g014110' => 'spe',
	'Sopen03g015260' => 'spe',
	'Sopen03g015790' => 'spe',
	'Sopen03g018360' => 'spe',
	'Sopen03g024470' => 'spe',
	'Sopen03g026800' => 'spe',
	'Sopen04g003180' => 'spe',
	'Sopen04g008260' => 'spe',
	'Sopen04g010320' => 'spe',
	'Sopen04g011020' => 'spe',
	'Sopen04g011200' => 'spe',
	'Sopen04g011280' => 'spe',
	'Sopen04g021910' => 'spe',
	'Sopen04g023870' => 'spe',
	'Sopen05g009880' => 'spe',
	'Sopen05g011580' => 'spe',
	'Sopen05g012230' => 'spe',
	'Sopen05g012500' => 'spe',
	'Sopen05g012560' => 'spe',
	'Sopen05g012570' => 'spe',
	'Sopen05g012760' => 'spe',
	'Sopen05g013710' => 'spe',
	'Sopen05g015050' => 'spe',
	'Sopen05g026090' => 'spe',
	'Sopen05g028020' => 'spe',
	'Sopen05g028610' => 'spe',
	'Sopen05g029300' => 'spe',
	'Sopen06g005520' => 'spe',
	'Sopen06g006750' => 'spe',
	'Sopen06g008160' => 'spe',
	'Sopen06g009120' => 'spe',
	'Sopen06g013550' => 'spe',
	'Sopen06g015340' => 'spe',
	'Sopen06g018330' => 'spe',
	'Sopen06g021630' => 'spe',
	'Sopen06g021650' => 'spe',
	'Sopen07g006730' => 'spe',
	'Sopen07g008690' => 'spe',
	'Sopen07g008700' => 'spe',
	'Sopen07g008720' => 'spe',
	'Sopen07g008870' => 'spe',
	'Sopen07g009400' => 'spe',
	'Sopen07g009410' => 'spe',
	'Sopen07g009470' => 'spe',
	'Sopen07g009540' => 'spe',
	'Sopen07g011060' => 'spe',
	'Sopen07g011110' => 'spe',
	'Sopen07g011820' => 'spe',
	'Sopen07g013260' => 'spe',
	'Sopen07g014740' => 'spe',
	'Sopen07g015160' => 'spe',
	'Sopen07g015230' => 'spe',
	'Sopen07g016240' => 'spe',
	'Sopen07g017200' => 'spe',
	'Sopen07g017810' => 'spe',
	'Sopen07g019030' => 'spe',
	'Sopen07g020430' => 'spe',
	'Sopen07g021010' => 'spe',
	'Sopen07g021340' => 'spe',
	'Sopen07g022950' => 'spe',
	'Sopen07g027860' => 'spe',
	'Sopen08g007820' => 'spe',
	'Sopen08g009330' => 'spe',
	'Sopen08g012310' => 'spe',
	'Sopen08g012560' => 'spe',
	'Sopen08g014040' => 'spe',
	'Sopen08g014650' => 'spe',
	'Sopen08g017020' => 'spe',
	'Sopen08g018300' => 'spe',
	'Sopen08g020530' => 'spe',
	'Sopen09g008590' => 'spe',
	'Sopen09g008780' => 'spe',
	'Sopen09g011540' => 'spe',
	'Sopen09g011920' => 'spe',
	'Sopen09g014170' => 'spe',
	'Sopen09g016520' => 'spe',
	'Sopen09g021030' => 'spe',
	'Sopen09g023110' => 'spe',
	'Sopen09g024750' => 'spe',
	'Sopen09g025230' => 'spe',
	'Sopen09g025600' => 'spe',
	'Sopen09g034660' => 'spe',
	'Sopen10g006700' => 'spe',
	'Sopen10g009130' => 'spe',
	'Sopen10g009140' => 'spe',
	'Sopen10g009560' => 'spe',
	'Sopen10g010340' => 'spe',
	'Sopen10g011040' => 'spe',
	'Sopen10g013650' => 'spe',
	'Sopen10g014130' => 'spe',
	'Sopen10g014140' => 'spe',
	'Sopen10g014760' => 'spe',
	'Sopen10g015080' => 'spe',
	'Sopen10g015830' => 'spe',
	'Sopen10g018240' => 'spe',
	'Sopen10g018300' => 'spe',
	'Sopen10g018350' => 'spe',
	'Sopen10g018460' => 'spe',
	'Sopen10g018670' => 'spe',
	'Sopen10g019040' => 'spe',
	'Sopen10g019330' => 'spe',
	'Sopen10g019340' => 'spe',
	'Sopen10g019360' => 'spe',
	'Sopen10g019370' => 'spe',
	'Sopen10g020620' => 'spe',
	'Sopen10g021550' => 'spe',
	'Sopen10g022160' => 'spe',
	'Sopen10g023540' => 'spe',
	'Sopen10g023570' => 'spe',
	'Sopen10g023580' => 'spe',
	'Sopen10g023600' => 'spe',
	'Sopen10g023620' => 'spe',
	'Sopen10g023650' => 'spe',
	'Sopen10g024800' => 'spe',
	'Sopen10g026170' => 'spe',
	'Sopen11g007790' => 'spe',
	'Sopen11g010170' => 'spe',
	'Sopen11g010580' => 'spe',
	'Sopen11g013420' => 'spe',
	'Sopen11g016330' => 'spe',
	'Sopen11g017010' => 'spe',
	'Sopen11g018110' => 'spe',
	'Sopen11g018960' => 'spe',
	'Sopen11g019000' => 'spe',
	'Sopen11g019970' => 'spe',
	'Sopen11g020340' => 'spe',
	'Sopen11g020970' => 'spe',
	'Sopen12g008510' => 'spe',
	'Sopen12g008910' => 'spe',
	'Sopen12g009010' => 'spe',
	'Sopen12g009120' => 'spe',
	'Sopen12g009340' => 'spe',
	'Sopen12g009580' => 'spe',
	'Sopen12g010190' => 'spe',
	'Sopen12g010320' => 'spe',
	'Sopen12g010370' => 'spe',
	'Sopen12g012140' => 'spe',
	'Sopen12g012700' => 'spe',
	'Sopen12g013490' => 'spe',
	'Sopen12g014290' => 'spe',
	'Sopen12g015060' => 'spe',
	'Sopen12g015610' => 'spe',
	'Sopen12g018380' => 'spe',
	'Sopen12g019150' => 'spe',
	'Sopen12g020560' => 'spe',
	'Sopen12g023320' => 'spe',
	'Sp3g24190' => 'spa',
	'Sp4g07270' => 'spa',
	'Sp4g07530' => 'spa',
	'Sp4g07670' => 'spa',
	'Sp6g09360' => 'spa',
	'Sp7g04180' => 'spa',
	'Sp7g04980' => 'spa',
	'Sp7g08200' => 'spa',
	'Sp7g09660' => 'spa',
	'SpUn0081_0010' => 'spa',
	'THA.LOC104803417' => 'tha',
	'THA.LOC104817059' => 'tha',
	'Thecc.01G188700' => 'tca',
	'Thecc.05G106700' => 'tca',
	'Thecc.06G068800' => 'tca',
	'Thecc.07G189100' => 'tca',
	'Thecc.09G172800' => 'tca',
	'Thhalv10023044m.g' => 'esa',
	'Thhalv10023881m.g' => 'esa',
	'Thhalv10024067m.g' => 'esa'
)
$gf_id = 'HOM05D000691'
$gf_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$gf_types_configuration = array(
	'HOMFAM' => array(
		'order' => '1',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	),
	'ORTHOFAM' => array(
		'order' => '2',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	)
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$allow_async_use = true
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D000691'
)
$data_identifier = 'HOM05D000691'
$data_type = 'gf_id'
$species_gene_counts = array(
	'amhyb' => (int) 18,
	'aly' => (int) 1,
	'atr' => (int) 21,
	'acertr' => (int) 1,
	'cqu' => (int) 90,
	'bol' => (int) 1,
	'can' => (int) 7,
	'cil' => (int) 3,
	'cla' => (int) 15,
	'col' => (int) 1,
	'cpa' => (int) 2,
	'csa' => (int) 7,
	'camsi' => (int) 10,
	'din' => (int) 1,
	'dzi' => (int) 2,
	'bvu' => (int) 18,
	'fve' => (int) 22,
	'gra' => (int) 1,
	'han' => (int) 7,
	'hma' => (int) 9,
	'sun' => (int) 16,
	'lonja' => (int) 46,
	'mes' => (int) 8,
	'mbi' => (int) 2,
	'cme' => (int) 6,
	'oeu' => (int) 110,
	'stu' => (int) 45,
	'ptr' => (int) 1,
	'rch' => (int) 1,
	'sci' => (int) 1,
	'sgi' => (int) 31,
	'sas' => (int) 1,
	'shi' => (int) 89,
	'sly' => (int) 2,
	'spe' => (int) 211,
	'spa' => (int) 10,
	'tha' => (int) 2,
	'tca' => (int) 5,
	'esa' => (int) 3
)
$gf_gene_species = 'esa'
$gf_gene_id = 'Thhalv10024067m.g'
$species_info = array(
	'species' => 'can',
	'common_name' => 'Capsicum annuum',
	'tax_id' => '4072',
	'version' => 'Pepper Genome v2.0'
)
$local_species = 'can'
$disabled = ''
$selected = ''
$num_hits = (int) 0
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Analysis/custom_tree_creation.ctp, line 27
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933

Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]
Code Context
        $disabled    = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";

        $selected    = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";

        $num_hits    = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D000691',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '827',
		'num_species' => '39'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'gf_genes' => array(
		'Ah.01g012340' => 'amhyb',
		'Ah.01g013530' => 'amhyb',
		'Ah.03g143080' => 'amhyb',
		'Ah.06g186750' => 'amhyb',
		'Ah.06g186800' => 'amhyb',
		'Ah.07g200050' => 'amhyb',
		'Ah.08g209110' => 'amhyb',
		'Ah.09g229600' => 'amhyb',
		'Ah.09g229610' => 'amhyb',
		'Ah.10g026490' => 'amhyb',
		'Ah.12g065350' => 'amhyb',
		'Ah.13g069310' => 'amhyb',
		'Ah.14g080130' => 'amhyb',
		'Ah.14g081130' => 'amhyb',
		'Ah.14g081140' => 'amhyb',
		'Ah.16g109160' => 'amhyb',
		'Ah.16g109170' => 'amhyb',
		'Ah.16g109370' => 'amhyb',
		'AL3G47720' => 'aly',
		'ATR0012G060' => 'atr',
		'ATR0026G029' => 'atr',
		'ATR0193G043' => 'atr',
		'ATR0561G076' => 'atr',
		'ATR0561G181' => 'atr',
		'ATR0568G014' => 'atr',
		'ATR0568G114' => 'atr',
		'ATR0620G039' => 'atr',
		'ATR0629G125' => 'atr',
		'ATR0661G583' => 'atr',
		'ATR0686G019' => 'atr',
		'ATR0693G232' => 'atr',
		'ATR0697G104' => 'atr',
		'ATR0789G146' => 'atr',
		'ATR0794G066' => 'atr',
		'ATR1127G127' => 'atr',
		'ATR1131G040' => 'atr',
		'ATR1134G004' => 'atr',
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		'SEGI_35046' => 'sgi',
		'SEGI_35582' => 'sgi',
		'SEGI_37882' => 'sgi',
		'SEGI_39680' => 'sgi',
		'SEGI_40069' => 'sgi',
		'SEGI_40087' => 'sgi',
		'SEGI_41606' => 'sgi',
		'SGA_v2.0_scaffold50G18578' => 'sas',
		'SHI00293' => 'shi',
		'SHI00389' => 'shi',
		'SHI00445' => 'shi',
		'SHI01000' => 'shi',
		'SHI01503' => 'shi',
		'SHI01718' => 'shi',
		'SHI03454' => 'shi',
		'SHI03493' => 'shi',
		'SHI03494' => 'shi',
		'SHI03628' => 'shi',
		'SHI04457' => 'shi',
		'SHI04691' => 'shi',
		'SHI04829' => 'shi',
		'SHI05225' => 'shi',
		'SHI06326' => 'shi',
		'SHI06505' => 'shi',
		'SHI06770' => 'shi',
		'SHI07388' => 'shi',
		'SHI07582' => 'shi',
		'SHI07583' => 'shi',
		'SHI08271' => 'shi',
		'SHI10619' => 'shi',
		'SHI10892' => 'shi',
		'SHI10910' => 'shi',
		'SHI10911' => 'shi',
		'SHI14326' => 'shi',
		'SHI14681' => 'shi',
		'SHI15017' => 'shi',
		'SHI15096' => 'shi',
		'SHI15120' => 'shi',
		'SHI15274' => 'shi',
		'SHI16232' => 'shi',
		'SHI16811' => 'shi',
		'SHI17386' => 'shi',
		'SHI17926' => 'shi',
		'SHI18293' => 'shi',
		'SHI20489' => 'shi',
		'SHI20658' => 'shi',
		'SHI20663' => 'shi',
		'SHI21566' => 'shi',
		'SHI22547' => 'shi',
		'SHI22708' => 'shi',
		'SHI22709' => 'shi',
		'SHI22878' => 'shi',
		'SHI22879' => 'shi',
		'SHI23024' => 'shi',
		'SHI25053' => 'shi',
		'SHI25076' => 'shi',
		'SHI25116' => 'shi',
		'SHI25381' => 'shi',
		'SHI25535' => 'shi',
		'SHI25740' => 'shi',
		'SHI25991' => 'shi',
		'SHI26344' => 'shi',
		'SHI26345' => 'shi',
		'SHI27097' => 'shi',
		'SHI27140' => 'shi',
		'SHI27178' => 'shi',
		'SHI27207' => 'shi',
		'SHI27225' => 'shi',
		'SHI27734' => 'shi',
		'SHI27806' => 'shi',
		'SHI28576' => 'shi',
		'SHI29081' => 'shi',
		'SHI30038' => 'shi',
		'SHI30394' => 'shi',
		'SHI30652' => 'shi',
		'SHI32154' => 'shi',
		'SHI32205' => 'shi',
		'SHI32365' => 'shi',
		'SHI32439' => 'shi',
		'SHI32505' => 'shi',
		'SHI32626' => 'shi',
		'SHI32714' => 'shi',
		'SHI32715' => 'shi',
		'SHI32716' => 'shi',
		'SHI33118' => 'shi',
		'SHI33318' => 'shi',
		'SHI33373' => 'shi',
		'SHI33512' => 'shi',
		'SHI33625' => 'shi',
		'SHI34327' => 'shi',
		'SHI35604' => 'shi',
		'SHI36119' => 'shi',
		'SHI36120' => 'shi',
		'SHI44959' => 'shi',
		'SHI46406' => 'shi',
		'SHI48191' => 'shi',
		'SHI48192' => 'shi',
		'Solyc10g150111.1' => 'sly',
		'Solyc12g062340.2' => 'sly',
		'Sopen00g001750' => 'spe',
		'Sopen00g001820' => 'spe',
		'Sopen00g001830' => 'spe',
		'Sopen00g001890' => 'spe',
		'Sopen00g002240' => 'spe',
		'Sopen00g003950' => 'spe',
		'Sopen00g004130' => 'spe',
		'Sopen00g004810' => 'spe',
		'Sopen00g005120' => 'spe',
		'Sopen00g005190' => 'spe',
		'Sopen00g007000' => 'spe',
		'Sopen00g007210' => 'spe',
		'Sopen00g012840' => 'spe',
		'Sopen00g013060' => 'spe',
		'Sopen00g013610' => 'spe',
		'Sopen00g013630' => 'spe',
		'Sopen01g004610' => 'spe',
		'Sopen01g007660' => 'spe',
		'Sopen01g007750' => 'spe',
		'Sopen01g007760' => 'spe',
		'Sopen01g007770' => 'spe',
		'Sopen01g007860' => 'spe',
		'Sopen01g009130' => 'spe',
		'Sopen01g009820' => 'spe',
		'Sopen01g011240' => 'spe',
		'Sopen01g012740' => 'spe',
		'Sopen01g013840' => 'spe',
		'Sopen01g013850' => 'spe',
		'Sopen01g016140' => 'spe',
		'Sopen01g016150' => 'spe',
		'Sopen01g016830' => 'spe',
		'Sopen01g017260' => 'spe',
		'Sopen01g019000' => 'spe',
		'Sopen01g019690' => 'spe',
		'Sopen01g022160' => 'spe',
		'Sopen01g024000' => 'spe',
		'Sopen01g024670' => 'spe',
		'Sopen01g024770' => 'spe',
		'Sopen01g024900' => 'spe',
		'Sopen01g025130' => 'spe',
		'Sopen01g026370' => 'spe',
		'Sopen01g041640' => 'spe',
		'Sopen01g046930' => 'spe',
		'Sopen02g001360' => 'spe',
		'Sopen02g002010' => 'spe',
		'Sopen02g003600' => 'spe',
		'Sopen02g003730' => 'spe',
		'Sopen02g005430' => 'spe',
		'Sopen02g005510' => 'spe',
		'Sopen02g006840' => 'spe',
		'Sopen02g007390' => 'spe',
		'Sopen02g007420' => 'spe',
		'Sopen02g007540' => 'spe',
		'Sopen02g007920' => 'spe',
		'Sopen02g008960' => 'spe',
		'Sopen02g009450' => 'spe',
		'Sopen02g009460' => 'spe',
		'Sopen02g011320' => 'spe',
		'Sopen02g012680' => 'spe',
		'Sopen02g018090' => 'spe',
		'Sopen02g022140' => 'spe',
		'Sopen03g010330' => 'spe',
		'Sopen03g013130' => 'spe',
		'Sopen03g013180' => 'spe',
		'Sopen03g013230' => 'spe',
		'Sopen03g014110' => 'spe',
		'Sopen03g015260' => 'spe',
		'Sopen03g015790' => 'spe',
		'Sopen03g018360' => 'spe',
		'Sopen03g024470' => 'spe',
		'Sopen03g026800' => 'spe',
		'Sopen04g003180' => 'spe',
		'Sopen04g008260' => 'spe',
		'Sopen04g010320' => 'spe',
		'Sopen04g011020' => 'spe',
		'Sopen04g011200' => 'spe',
		'Sopen04g011280' => 'spe',
		'Sopen04g021910' => 'spe',
		'Sopen04g023870' => 'spe',
		'Sopen05g009880' => 'spe',
		'Sopen05g011580' => 'spe',
		'Sopen05g012230' => 'spe',
		'Sopen05g012500' => 'spe',
		'Sopen05g012560' => 'spe',
		'Sopen05g012570' => 'spe',
		'Sopen05g012760' => 'spe',
		'Sopen05g013710' => 'spe',
		'Sopen05g015050' => 'spe',
		'Sopen05g026090' => 'spe',
		'Sopen05g028020' => 'spe',
		'Sopen05g028610' => 'spe',
		'Sopen05g029300' => 'spe',
		'Sopen06g005520' => 'spe',
		'Sopen06g006750' => 'spe',
		'Sopen06g008160' => 'spe',
		'Sopen06g009120' => 'spe',
		'Sopen06g013550' => 'spe',
		'Sopen06g015340' => 'spe',
		'Sopen06g018330' => 'spe',
		'Sopen06g021630' => 'spe',
		'Sopen06g021650' => 'spe',
		'Sopen07g006730' => 'spe',
		'Sopen07g008690' => 'spe',
		'Sopen07g008700' => 'spe',
		'Sopen07g008720' => 'spe',
		'Sopen07g008870' => 'spe',
		'Sopen07g009400' => 'spe',
		'Sopen07g009410' => 'spe',
		'Sopen07g009470' => 'spe',
		'Sopen07g009540' => 'spe',
		'Sopen07g011060' => 'spe',
		'Sopen07g011110' => 'spe',
		'Sopen07g011820' => 'spe',
		'Sopen07g013260' => 'spe',
		'Sopen07g014740' => 'spe',
		'Sopen07g015160' => 'spe',
		'Sopen07g015230' => 'spe',
		'Sopen07g016240' => 'spe',
		'Sopen07g017200' => 'spe',
		'Sopen07g017810' => 'spe',
		'Sopen07g019030' => 'spe',
		'Sopen07g020430' => 'spe',
		'Sopen07g021010' => 'spe',
		'Sopen07g021340' => 'spe',
		'Sopen07g022950' => 'spe',
		'Sopen07g027860' => 'spe',
		'Sopen08g007820' => 'spe',
		'Sopen08g009330' => 'spe',
		'Sopen08g012310' => 'spe',
		'Sopen08g012560' => 'spe',
		'Sopen08g014040' => 'spe',
		'Sopen08g014650' => 'spe',
		'Sopen08g017020' => 'spe',
		'Sopen08g018300' => 'spe',
		'Sopen08g020530' => 'spe',
		'Sopen09g008590' => 'spe',
		'Sopen09g008780' => 'spe',
		'Sopen09g011540' => 'spe',
		'Sopen09g011920' => 'spe',
		'Sopen09g014170' => 'spe',
		'Sopen09g016520' => 'spe',
		'Sopen09g021030' => 'spe',
		'Sopen09g023110' => 'spe',
		'Sopen09g024750' => 'spe',
		'Sopen09g025230' => 'spe',
		'Sopen09g025600' => 'spe',
		'Sopen09g034660' => 'spe',
		'Sopen10g006700' => 'spe',
		'Sopen10g009130' => 'spe',
		'Sopen10g009140' => 'spe',
		'Sopen10g009560' => 'spe',
		'Sopen10g010340' => 'spe',
		'Sopen10g011040' => 'spe',
		'Sopen10g013650' => 'spe',
		'Sopen10g014130' => 'spe',
		'Sopen10g014140' => 'spe',
		'Sopen10g014760' => 'spe',
		'Sopen10g015080' => 'spe',
		'Sopen10g015830' => 'spe',
		'Sopen10g018240' => 'spe',
		'Sopen10g018300' => 'spe',
		'Sopen10g018350' => 'spe',
		'Sopen10g018460' => 'spe',
		'Sopen10g018670' => 'spe',
		'Sopen10g019040' => 'spe',
		'Sopen10g019330' => 'spe',
		'Sopen10g019340' => 'spe',
		'Sopen10g019360' => 'spe',
		'Sopen10g019370' => 'spe',
		'Sopen10g020620' => 'spe',
		'Sopen10g021550' => 'spe',
		'Sopen10g022160' => 'spe',
		'Sopen10g023540' => 'spe',
		'Sopen10g023570' => 'spe',
		'Sopen10g023580' => 'spe',
		'Sopen10g023600' => 'spe',
		'Sopen10g023620' => 'spe',
		'Sopen10g023650' => 'spe',
		'Sopen10g024800' => 'spe',
		'Sopen10g026170' => 'spe',
		'Sopen11g007790' => 'spe',
		'Sopen11g010170' => 'spe',
		'Sopen11g010580' => 'spe',
		'Sopen11g013420' => 'spe',
		'Sopen11g016330' => 'spe',
		'Sopen11g017010' => 'spe',
		'Sopen11g018110' => 'spe',
		'Sopen11g018960' => 'spe',
		'Sopen11g019000' => 'spe',
		'Sopen11g019970' => 'spe',
		'Sopen11g020340' => 'spe',
		'Sopen11g020970' => 'spe',
		'Sopen12g008510' => 'spe',
		'Sopen12g008910' => 'spe',
		'Sopen12g009010' => 'spe',
		'Sopen12g009120' => 'spe',
		'Sopen12g009340' => 'spe',
		'Sopen12g009580' => 'spe',
		'Sopen12g010190' => 'spe',
		'Sopen12g010320' => 'spe',
		'Sopen12g010370' => 'spe',
		'Sopen12g012140' => 'spe',
		'Sopen12g012700' => 'spe',
		'Sopen12g013490' => 'spe',
		'Sopen12g014290' => 'spe',
		'Sopen12g015060' => 'spe',
		'Sopen12g015610' => 'spe',
		'Sopen12g018380' => 'spe',
		'Sopen12g019150' => 'spe',
		'Sopen12g020560' => 'spe',
		'Sopen12g023320' => 'spe',
		'Sp3g24190' => 'spa',
		'Sp4g07270' => 'spa',
		'Sp4g07530' => 'spa',
		'Sp4g07670' => 'spa',
		'Sp6g09360' => 'spa',
		'Sp7g04180' => 'spa',
		'Sp7g04980' => 'spa',
		'Sp7g08200' => 'spa',
		'Sp7g09660' => 'spa',
		'SpUn0081_0010' => 'spa',
		'THA.LOC104803417' => 'tha',
		'THA.LOC104817059' => 'tha',
		'Thecc.01G188700' => 'tca',
		'Thecc.05G106700' => 'tca',
		'Thecc.06G068800' => 'tca',
		'Thecc.07G189100' => 'tca',
		'Thecc.09G172800' => 'tca',
		'Thhalv10023044m.g' => 'esa',
		'Thhalv10023881m.g' => 'esa',
		'Thhalv10024067m.g' => 'esa'
	),
	'gf_id' => 'HOM05D000691',
	'gf_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'gf_types_configuration' => array(
		'HOMFAM' => array(
			'order' => '1',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		),
		'ORTHOFAM' => array(
			'order' => '2',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		)
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'allow_async_use' => true,
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D000691'
	),
	'data_identifier' => 'HOM05D000691',
	'data_type' => 'gf_id'
)
$sidebar_info = array(
	'gf_id' => 'HOM05D000691',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '827',
	'num_species' => '39'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$gf_genes = array(
	'Ah.01g012340' => 'amhyb',
	'Ah.01g013530' => 'amhyb',
	'Ah.03g143080' => 'amhyb',
	'Ah.06g186750' => 'amhyb',
	'Ah.06g186800' => 'amhyb',
	'Ah.07g200050' => 'amhyb',
	'Ah.08g209110' => 'amhyb',
	'Ah.09g229600' => 'amhyb',
	'Ah.09g229610' => 'amhyb',
	'Ah.10g026490' => 'amhyb',
	'Ah.12g065350' => 'amhyb',
	'Ah.13g069310' => 'amhyb',
	'Ah.14g080130' => 'amhyb',
	'Ah.14g081130' => 'amhyb',
	'Ah.14g081140' => 'amhyb',
	'Ah.16g109160' => 'amhyb',
	'Ah.16g109170' => 'amhyb',
	'Ah.16g109370' => 'amhyb',
	'AL3G47720' => 'aly',
	'ATR0012G060' => 'atr',
	'ATR0026G029' => 'atr',
	'ATR0193G043' => 'atr',
	'ATR0561G076' => 'atr',
	'ATR0561G181' => 'atr',
	'ATR0568G014' => 'atr',
	'ATR0568G114' => 'atr',
	'ATR0620G039' => 'atr',
	'ATR0629G125' => 'atr',
	'ATR0661G583' => 'atr',
	'ATR0686G019' => 'atr',
	'ATR0693G232' => 'atr',
	'ATR0697G104' => 'atr',
	'ATR0789G146' => 'atr',
	'ATR0794G066' => 'atr',
	'ATR1127G127' => 'atr',
	'ATR1131G040' => 'atr',
	'ATR1134G004' => 'atr',
	'ATR1134G095' => 'atr',
	'ATR1152G110' => 'atr',
	'ATR1153G065' => 'atr',
	'Atru.chr3.2296' => 'acertr',
	'AUR62000692' => 'cqu',
	'AUR62001473' => 'cqu',
	'AUR62001812' => 'cqu',
	'AUR62002706' => 'cqu',
	'AUR62003904' => 'cqu',
	'AUR62003905' => 'cqu',
	'AUR62004840' => 'cqu',
	'AUR62005160' => 'cqu',
	'AUR62005604' => 'cqu',
	'AUR62005891' => 'cqu',
	'AUR62007290' => 'cqu',
	'AUR62007502' => 'cqu',
	'AUR62007923' => 'cqu',
	'AUR62009972' => 'cqu',
	'AUR62010488' => 'cqu',
	'AUR62010643' => 'cqu',
	'AUR62012637' => 'cqu',
	'AUR62013492' => 'cqu',
	'AUR62014239' => 'cqu',
	'AUR62014878' => 'cqu',
	'AUR62015857' => 'cqu',
	'AUR62016224' => 'cqu',
	'AUR62017430' => 'cqu',
	'AUR62017467' => 'cqu',
	'AUR62018234' => 'cqu',
	'AUR62019060' => 'cqu',
	'AUR62019607' => 'cqu',
	'AUR62019661' => 'cqu',
	'AUR62022775' => 'cqu',
	'AUR62023603' => 'cqu',
	'AUR62024563' => 'cqu',
	'AUR62026199' => 'cqu',
	'AUR62026905' => 'cqu',
	'AUR62028639' => 'cqu',
	'AUR62029168' => 'cqu',
	'AUR62029551' => 'cqu',
	'AUR62029860' => 'cqu',
	'AUR62030164' => 'cqu',
	'AUR62031208' => 'cqu',
	'AUR62031287' => 'cqu',
	'AUR62031817' => 'cqu',
	'AUR62032126' => 'cqu',
	'AUR62032358' => 'cqu',
	'AUR62032884' => 'cqu',
	'AUR62032892' => 'cqu',
	'AUR62033082' => 'cqu',
	'AUR62033100' => 'cqu',
	'AUR62033255' => 'cqu',
	'AUR62033698' => 'cqu',
	'AUR62033757' => 'cqu',
	'AUR62034760' => 'cqu',
	'AUR62034860' => 'cqu',
	'AUR62035179' => 'cqu',
	'AUR62035881' => 'cqu',
	'AUR62036824' => 'cqu',
	'AUR62036876' => 'cqu',
	'AUR62037319' => 'cqu',
	'AUR62037362' => 'cqu',
	'AUR62037541' => 'cqu',
	'AUR62037853' => 'cqu',
	'AUR62038299' => 'cqu',
	'AUR62038563' => 'cqu',
	'AUR62038564' => 'cqu',
	'AUR62038594' => 'cqu',
	'AUR62038792' => 'cqu',
	'AUR62038947' => 'cqu',
	'AUR62039030' => 'cqu',
	'AUR62039231' => 'cqu',
	'AUR62039452' => 'cqu',
	'AUR62040334' => 'cqu',
	'AUR62040869' => 'cqu',
	'AUR62040870' => 'cqu',
	'AUR62040916' => 'cqu',
	'AUR62041199' => 'cqu',
	'AUR62041334' => 'cqu',
	'AUR62041608' => 'cqu',
	'AUR62041609' => 'cqu',
	'AUR62041833' => 'cqu',
	'AUR62041834' => 'cqu',
	'AUR62042054' => 'cqu',
	'AUR62042134' => 'cqu',
	'AUR62042236' => 'cqu',
	'AUR62042281' => 'cqu',
	'AUR62042593' => 'cqu',
	'AUR62042653' => 'cqu',
	'AUR62043025' => 'cqu',
	'AUR62043026' => 'cqu',
	'AUR62043063' => 'cqu',
	'AUR62043091' => 'cqu',
	'AUR62043320' => 'cqu',
	'BolC5t32558H' => 'bol',
	'CAN.G1036.12' => 'can',
	'CAN.G1432.23' => 'can',
	'CAN.G159.19' => 'can',
	'CAN.G4114.1' => 'can',
	'CAN.G492.85' => 'can',
	'CAN.G500.95' => 'can',
	'CAN.G93.31' => 'can',
	'CiPaw.04G054900' => 'cil',
	'CiPaw.05G045400' => 'cil',
	'CiPaw.15G094100' => 'cil',
	'ClCG00G000700' => 'cla',
	'ClCG00G000780' => 'cla',
	'ClCG01G012280' => 'cla',
	'ClCG02G006140' => 'cla',
	'ClCG02G009810' => 'cla',
	'ClCG03G010170' => 'cla',
	'ClCG03G010260' => 'cla',
	'ClCG04G000770' => 'cla',
	'ClCG05G013980' => 'cla',
	'ClCG06G009110' => 'cla',
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	'Sopen02g022140' => 'spe',
	'Sopen03g010330' => 'spe',
	'Sopen03g013130' => 'spe',
	'Sopen03g013180' => 'spe',
	'Sopen03g013230' => 'spe',
	'Sopen03g014110' => 'spe',
	'Sopen03g015260' => 'spe',
	'Sopen03g015790' => 'spe',
	'Sopen03g018360' => 'spe',
	'Sopen03g024470' => 'spe',
	'Sopen03g026800' => 'spe',
	'Sopen04g003180' => 'spe',
	'Sopen04g008260' => 'spe',
	'Sopen04g010320' => 'spe',
	'Sopen04g011020' => 'spe',
	'Sopen04g011200' => 'spe',
	'Sopen04g011280' => 'spe',
	'Sopen04g021910' => 'spe',
	'Sopen04g023870' => 'spe',
	'Sopen05g009880' => 'spe',
	'Sopen05g011580' => 'spe',
	'Sopen05g012230' => 'spe',
	'Sopen05g012500' => 'spe',
	'Sopen05g012560' => 'spe',
	'Sopen05g012570' => 'spe',
	'Sopen05g012760' => 'spe',
	'Sopen05g013710' => 'spe',
	'Sopen05g015050' => 'spe',
	'Sopen05g026090' => 'spe',
	'Sopen05g028020' => 'spe',
	'Sopen05g028610' => 'spe',
	'Sopen05g029300' => 'spe',
	'Sopen06g005520' => 'spe',
	'Sopen06g006750' => 'spe',
	'Sopen06g008160' => 'spe',
	'Sopen06g009120' => 'spe',
	'Sopen06g013550' => 'spe',
	'Sopen06g015340' => 'spe',
	'Sopen06g018330' => 'spe',
	'Sopen06g021630' => 'spe',
	'Sopen06g021650' => 'spe',
	'Sopen07g006730' => 'spe',
	'Sopen07g008690' => 'spe',
	'Sopen07g008700' => 'spe',
	'Sopen07g008720' => 'spe',
	'Sopen07g008870' => 'spe',
	'Sopen07g009400' => 'spe',
	'Sopen07g009410' => 'spe',
	'Sopen07g009470' => 'spe',
	'Sopen07g009540' => 'spe',
	'Sopen07g011060' => 'spe',
	'Sopen07g011110' => 'spe',
	'Sopen07g011820' => 'spe',
	'Sopen07g013260' => 'spe',
	'Sopen07g014740' => 'spe',
	'Sopen07g015160' => 'spe',
	'Sopen07g015230' => 'spe',
	'Sopen07g016240' => 'spe',
	'Sopen07g017200' => 'spe',
	'Sopen07g017810' => 'spe',
	'Sopen07g019030' => 'spe',
	'Sopen07g020430' => 'spe',
	'Sopen07g021010' => 'spe',
	'Sopen07g021340' => 'spe',
	'Sopen07g022950' => 'spe',
	'Sopen07g027860' => 'spe',
	'Sopen08g007820' => 'spe',
	'Sopen08g009330' => 'spe',
	'Sopen08g012310' => 'spe',
	'Sopen08g012560' => 'spe',
	'Sopen08g014040' => 'spe',
	'Sopen08g014650' => 'spe',
	'Sopen08g017020' => 'spe',
	'Sopen08g018300' => 'spe',
	'Sopen08g020530' => 'spe',
	'Sopen09g008590' => 'spe',
	'Sopen09g008780' => 'spe',
	'Sopen09g011540' => 'spe',
	'Sopen09g011920' => 'spe',
	'Sopen09g014170' => 'spe',
	'Sopen09g016520' => 'spe',
	'Sopen09g021030' => 'spe',
	'Sopen09g023110' => 'spe',
	'Sopen09g024750' => 'spe',
	'Sopen09g025230' => 'spe',
	'Sopen09g025600' => 'spe',
	'Sopen09g034660' => 'spe',
	'Sopen10g006700' => 'spe',
	'Sopen10g009130' => 'spe',
	'Sopen10g009140' => 'spe',
	'Sopen10g009560' => 'spe',
	'Sopen10g010340' => 'spe',
	'Sopen10g011040' => 'spe',
	'Sopen10g013650' => 'spe',
	'Sopen10g014130' => 'spe',
	'Sopen10g014140' => 'spe',
	'Sopen10g014760' => 'spe',
	'Sopen10g015080' => 'spe',
	'Sopen10g015830' => 'spe',
	'Sopen10g018240' => 'spe',
	'Sopen10g018300' => 'spe',
	'Sopen10g018350' => 'spe',
	'Sopen10g018460' => 'spe',
	'Sopen10g018670' => 'spe',
	'Sopen10g019040' => 'spe',
	'Sopen10g019330' => 'spe',
	'Sopen10g019340' => 'spe',
	'Sopen10g019360' => 'spe',
	'Sopen10g019370' => 'spe',
	'Sopen10g020620' => 'spe',
	'Sopen10g021550' => 'spe',
	'Sopen10g022160' => 'spe',
	'Sopen10g023540' => 'spe',
	'Sopen10g023570' => 'spe',
	'Sopen10g023580' => 'spe',
	'Sopen10g023600' => 'spe',
	'Sopen10g023620' => 'spe',
	'Sopen10g023650' => 'spe',
	'Sopen10g024800' => 'spe',
	'Sopen10g026170' => 'spe',
	'Sopen11g007790' => 'spe',
	'Sopen11g010170' => 'spe',
	'Sopen11g010580' => 'spe',
	'Sopen11g013420' => 'spe',
	'Sopen11g016330' => 'spe',
	'Sopen11g017010' => 'spe',
	'Sopen11g018110' => 'spe',
	'Sopen11g018960' => 'spe',
	'Sopen11g019000' => 'spe',
	'Sopen11g019970' => 'spe',
	'Sopen11g020340' => 'spe',
	'Sopen11g020970' => 'spe',
	'Sopen12g008510' => 'spe',
	'Sopen12g008910' => 'spe',
	'Sopen12g009010' => 'spe',
	'Sopen12g009120' => 'spe',
	'Sopen12g009340' => 'spe',
	'Sopen12g009580' => 'spe',
	'Sopen12g010190' => 'spe',
	'Sopen12g010320' => 'spe',
	'Sopen12g010370' => 'spe',
	'Sopen12g012140' => 'spe',
	'Sopen12g012700' => 'spe',
	'Sopen12g013490' => 'spe',
	'Sopen12g014290' => 'spe',
	'Sopen12g015060' => 'spe',
	'Sopen12g015610' => 'spe',
	'Sopen12g018380' => 'spe',
	'Sopen12g019150' => 'spe',
	'Sopen12g020560' => 'spe',
	'Sopen12g023320' => 'spe',
	'Sp3g24190' => 'spa',
	'Sp4g07270' => 'spa',
	'Sp4g07530' => 'spa',
	'Sp4g07670' => 'spa',
	'Sp6g09360' => 'spa',
	'Sp7g04180' => 'spa',
	'Sp7g04980' => 'spa',
	'Sp7g08200' => 'spa',
	'Sp7g09660' => 'spa',
	'SpUn0081_0010' => 'spa',
	'THA.LOC104803417' => 'tha',
	'THA.LOC104817059' => 'tha',
	'Thecc.01G188700' => 'tca',
	'Thecc.05G106700' => 'tca',
	'Thecc.06G068800' => 'tca',
	'Thecc.07G189100' => 'tca',
	'Thecc.09G172800' => 'tca',
	'Thhalv10023044m.g' => 'esa',
	'Thhalv10023881m.g' => 'esa',
	'Thhalv10024067m.g' => 'esa'
)
$gf_id = 'HOM05D000691'
$gf_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$gf_types_configuration = array(
	'HOMFAM' => array(
		'order' => '1',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	),
	'ORTHOFAM' => array(
		'order' => '2',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	)
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$allow_async_use = true
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D000691'
)
$data_identifier = 'HOM05D000691'
$data_type = 'gf_id'
$species_gene_counts = array(
	'amhyb' => (int) 18,
	'aly' => (int) 1,
	'atr' => (int) 21,
	'acertr' => (int) 1,
	'cqu' => (int) 90,
	'bol' => (int) 1,
	'can' => (int) 7,
	'cil' => (int) 3,
	'cla' => (int) 15,
	'col' => (int) 1,
	'cpa' => (int) 2,
	'csa' => (int) 7,
	'camsi' => (int) 10,
	'din' => (int) 1,
	'dzi' => (int) 2,
	'bvu' => (int) 18,
	'fve' => (int) 22,
	'gra' => (int) 1,
	'han' => (int) 7,
	'hma' => (int) 9,
	'sun' => (int) 16,
	'lonja' => (int) 46,
	'mes' => (int) 8,
	'mbi' => (int) 2,
	'cme' => (int) 6,
	'oeu' => (int) 110,
	'stu' => (int) 45,
	'ptr' => (int) 1,
	'rch' => (int) 1,
	'sci' => (int) 1,
	'sgi' => (int) 31,
	'sas' => (int) 1,
	'shi' => (int) 89,
	'sly' => (int) 2,
	'spe' => (int) 211,
	'spa' => (int) 10,
	'tha' => (int) 2,
	'tca' => (int) 5,
	'esa' => (int) 3
)
$gf_gene_species = 'esa'
$gf_gene_id = 'Thhalv10024067m.g'
$species_info = array(
	'species' => 'cpa',
	'common_name' => 'Carica papaya',
	'tax_id' => '3649',
	'version' => 'JGI ASGPB0.4'
)
$local_species = 'cpa'
$disabled = ''
$selected = ''
$num_hits = (int) 0
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Analysis/custom_tree_creation.ctp, line 27
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933

Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]
Code Context
        $disabled    = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";

        $selected    = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";

        $num_hits    = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D000691',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '827',
		'num_species' => '39'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'gf_genes' => array(
		'Ah.01g012340' => 'amhyb',
		'Ah.01g013530' => 'amhyb',
		'Ah.03g143080' => 'amhyb',
		'Ah.06g186750' => 'amhyb',
		'Ah.06g186800' => 'amhyb',
		'Ah.07g200050' => 'amhyb',
		'Ah.08g209110' => 'amhyb',
		'Ah.09g229600' => 'amhyb',
		'Ah.09g229610' => 'amhyb',
		'Ah.10g026490' => 'amhyb',
		'Ah.12g065350' => 'amhyb',
		'Ah.13g069310' => 'amhyb',
		'Ah.14g080130' => 'amhyb',
		'Ah.14g081130' => 'amhyb',
		'Ah.14g081140' => 'amhyb',
		'Ah.16g109160' => 'amhyb',
		'Ah.16g109170' => 'amhyb',
		'Ah.16g109370' => 'amhyb',
		'AL3G47720' => 'aly',
		'ATR0012G060' => 'atr',
		'ATR0026G029' => 'atr',
		'ATR0193G043' => 'atr',
		'ATR0561G076' => 'atr',
		'ATR0561G181' => 'atr',
		'ATR0568G014' => 'atr',
		'ATR0568G114' => 'atr',
		'ATR0620G039' => 'atr',
		'ATR0629G125' => 'atr',
		'ATR0661G583' => 'atr',
		'ATR0686G019' => 'atr',
		'ATR0693G232' => 'atr',
		'ATR0697G104' => 'atr',
		'ATR0789G146' => 'atr',
		'ATR0794G066' => 'atr',
		'ATR1127G127' => 'atr',
		'ATR1131G040' => 'atr',
		'ATR1134G004' => 'atr',
		'ATR1134G095' => 'atr',
		'ATR1152G110' => 'atr',
		'ATR1153G065' => 'atr',
		'Atru.chr3.2296' => 'acertr',
		'AUR62000692' => 'cqu',
		'AUR62001473' => 'cqu',
		'AUR62001812' => 'cqu',
		'AUR62002706' => 'cqu',
		'AUR62003904' => 'cqu',
		'AUR62003905' => 'cqu',
		'AUR62004840' => 'cqu',
		'AUR62005160' => 'cqu',
		'AUR62005604' => 'cqu',
		'AUR62005891' => 'cqu',
		'AUR62007290' => 'cqu',
		'AUR62007502' => 'cqu',
		'AUR62007923' => 'cqu',
		'AUR62009972' => 'cqu',
		'AUR62010488' => 'cqu',
		'AUR62010643' => 'cqu',
		'AUR62012637' => 'cqu',
		'AUR62013492' => 'cqu',
		'AUR62014239' => 'cqu',
		'AUR62014878' => 'cqu',
		'AUR62015857' => 'cqu',
		'AUR62016224' => 'cqu',
		'AUR62017430' => 'cqu',
		'AUR62017467' => 'cqu',
		'AUR62018234' => 'cqu',
		'AUR62019060' => 'cqu',
		'AUR62019607' => 'cqu',
		'AUR62019661' => 'cqu',
		'AUR62022775' => 'cqu',
		'AUR62023603' => 'cqu',
		'AUR62024563' => 'cqu',
		'AUR62026199' => 'cqu',
		'AUR62026905' => 'cqu',
		'AUR62028639' => 'cqu',
		'AUR62029168' => 'cqu',
		'AUR62029551' => 'cqu',
		'AUR62029860' => 'cqu',
		'AUR62030164' => 'cqu',
		'AUR62031208' => 'cqu',
		'AUR62031287' => 'cqu',
		'AUR62031817' => 'cqu',
		'AUR62032126' => 'cqu',
		'AUR62032358' => 'cqu',
		'AUR62032884' => 'cqu',
		'AUR62032892' => 'cqu',
		'AUR62033082' => 'cqu',
		'AUR62033100' => 'cqu',
		'AUR62033255' => 'cqu',
		'AUR62033698' => 'cqu',
		'AUR62033757' => 'cqu',
		'AUR62034760' => 'cqu',
		'AUR62034860' => 'cqu',
		'AUR62035179' => 'cqu',
		'AUR62035881' => 'cqu',
		'AUR62036824' => 'cqu',
		'AUR62036876' => 'cqu',
		'AUR62037319' => 'cqu',
		'AUR62037362' => 'cqu',
		'AUR62037541' => 'cqu',
		'AUR62037853' => 'cqu',
		'AUR62038299' => 'cqu',
		'AUR62038563' => 'cqu',
		'AUR62038564' => 'cqu',
		'AUR62038594' => 'cqu',
		'AUR62038792' => 'cqu',
		'AUR62038947' => 'cqu',
		'AUR62039030' => 'cqu',
		'AUR62039231' => 'cqu',
		'AUR62039452' => 'cqu',
		'AUR62040334' => 'cqu',
		'AUR62040869' => 'cqu',
		'AUR62040870' => 'cqu',
		'AUR62040916' => 'cqu',
		'AUR62041199' => 'cqu',
		'AUR62041334' => 'cqu',
		'AUR62041608' => 'cqu',
		'AUR62041609' => 'cqu',
		'AUR62041833' => 'cqu',
		'AUR62041834' => 'cqu',
		'AUR62042054' => 'cqu',
		'AUR62042134' => 'cqu',
		'AUR62042236' => 'cqu',
		'AUR62042281' => 'cqu',
		'AUR62042593' => 'cqu',
		'AUR62042653' => 'cqu',
		'AUR62043025' => 'cqu',
		'AUR62043026' => 'cqu',
		'AUR62043063' => 'cqu',
		'AUR62043091' => 'cqu',
		'AUR62043320' => 'cqu',
		'BolC5t32558H' => 'bol',
		'CAN.G1036.12' => 'can',
		'CAN.G1432.23' => 'can',
		'CAN.G159.19' => 'can',
		'CAN.G4114.1' => 'can',
		'CAN.G492.85' => 'can',
		'CAN.G500.95' => 'can',
		'CAN.G93.31' => 'can',
		'CiPaw.04G054900' => 'cil',
		'CiPaw.05G045400' => 'cil',
		'CiPaw.15G094100' => 'cil',
		'ClCG00G000700' => 'cla',
		'ClCG00G000780' => 'cla',
		'ClCG01G012280' => 'cla',
		'ClCG02G006140' => 'cla',
		'ClCG02G009810' => 'cla',
		'ClCG03G010170' => 'cla',
		'ClCG03G010260' => 'cla',
		'ClCG04G000770' => 'cla',
		'ClCG05G013980' => 'cla',
		'ClCG06G009110' => 'cla',
		'ClCG06G009120' => 'cla',
		'ClCG08G002190' => 'cla',
		'ClCG09G013830' => 'cla',
		'ClCG10G006760' => 'cla',
		'ClCG11G007310' => 'cla',
		'COL.COLO4_16141' => 'col',
		'Cpa.g.sc202.2' => 'cpa',
		'Cpa.g.sc76.18' => 'cpa',
		'CsaV3_1G031080' => 'csa',
		'CsaV3_4G011870' => 'csa',
		'CsaV3_4G014860' => 'csa',
		'CsaV3_4G021860' => 'csa',
		'CsaV3_6G009880' => 'csa',
		'CsaV3_7G021240' => 'csa',
		'CsaV3_UNG240600' => 'csa',
		'CSS0003516' => 'camsi',
		'CSS0013023' => 'camsi',
		'CSS0017680' => 'camsi',
		'CSS0018551' => 'camsi',
		'CSS0026792' => 'camsi',
		'CSS0028271' => 'camsi',
		'CSS0033603' => 'camsi',
		'CSS0040789' => 'camsi',
		'CSS0045068' => 'camsi',
		'CSS0045803' => 'camsi',
		'Dinv10528' => 'din',
		'Duzib116G0875' => 'dzi',
		'Duzib128G0055' => 'dzi',
		'EL10Ac1g02377' => 'bvu',
		'EL10Ac1g02378' => 'bvu',
		'EL10Ac2g03486' => 'bvu',
		'EL10Ac2g03487' => 'bvu',
		'EL10Ac3g05722' => 'bvu',
		'EL10Ac3g06186' => 'bvu',
		'EL10Ac5g11258' => 'bvu',
		'EL10Ac6g13831' => 'bvu',
		'EL10Ac6g14162' => 'bvu',
		'EL10Ac6g14316' => 'bvu',
		'EL10Ac6g14317' => 'bvu',
		'EL10Ac6g14588' => 'bvu',
		'EL10Ac7g16302' => 'bvu',
		'EL10Ac7g16543' => 'bvu',
		'EL10Ac8g18762' => 'bvu',
		'EL10Ac9g20847' => 'bvu',
		'EL10As7g23731' => 'bvu',
		'EL10As7g23732' => 'bvu',
		'FvH4_1g23713' => 'fve',
		'FvH4_2g00261' => 'fve',
		'FvH4_2g00262' => 'fve',
		'FvH4_2g15681' => 'fve',
		'FvH4_2g17851' => 'fve',
		'FvH4_3g10531' => 'fve',
		'FvH4_3g33536' => 'fve',
		'FvH4_4g03471' => 'fve',
		'FvH4_4g19351' => 'fve',
		'FvH4_4g34281' => 'fve',
		'FvH4_5g03811' => 'fve',
		'FvH4_5g03812' => 'fve',
		'FvH4_5g11822' => 'fve',
		'FvH4_5g31701' => 'fve',
		'FvH4_6g12161' => 'fve',
		'FvH4_6g15222' => 'fve',
		'FvH4_6g15223' => 'fve',
		'FvH4_6g19301' => 'fve',
		'FvH4_6g33011' => 'fve',
		'FvH4_6g50161' => 'fve',
		'FvH4_7g04123' => 'fve',
		'FvH4_c7g00010' => 'fve',
		'Gorai.012G165300' => 'gra',
		'HanXRQChr00c0452g0574871' => 'han',
		'HanXRQChr01g0029471' => 'han',
		'HanXRQChr05g0133501' => 'han',
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		'Sopen07g009470' => 'spe',
		'Sopen07g009540' => 'spe',
		'Sopen07g011060' => 'spe',
		'Sopen07g011110' => 'spe',
		'Sopen07g011820' => 'spe',
		'Sopen07g013260' => 'spe',
		'Sopen07g014740' => 'spe',
		'Sopen07g015160' => 'spe',
		'Sopen07g015230' => 'spe',
		'Sopen07g016240' => 'spe',
		'Sopen07g017200' => 'spe',
		'Sopen07g017810' => 'spe',
		'Sopen07g019030' => 'spe',
		'Sopen07g020430' => 'spe',
		'Sopen07g021010' => 'spe',
		'Sopen07g021340' => 'spe',
		'Sopen07g022950' => 'spe',
		'Sopen07g027860' => 'spe',
		'Sopen08g007820' => 'spe',
		'Sopen08g009330' => 'spe',
		'Sopen08g012310' => 'spe',
		'Sopen08g012560' => 'spe',
		'Sopen08g014040' => 'spe',
		'Sopen08g014650' => 'spe',
		'Sopen08g017020' => 'spe',
		'Sopen08g018300' => 'spe',
		'Sopen08g020530' => 'spe',
		'Sopen09g008590' => 'spe',
		'Sopen09g008780' => 'spe',
		'Sopen09g011540' => 'spe',
		'Sopen09g011920' => 'spe',
		'Sopen09g014170' => 'spe',
		'Sopen09g016520' => 'spe',
		'Sopen09g021030' => 'spe',
		'Sopen09g023110' => 'spe',
		'Sopen09g024750' => 'spe',
		'Sopen09g025230' => 'spe',
		'Sopen09g025600' => 'spe',
		'Sopen09g034660' => 'spe',
		'Sopen10g006700' => 'spe',
		'Sopen10g009130' => 'spe',
		'Sopen10g009140' => 'spe',
		'Sopen10g009560' => 'spe',
		'Sopen10g010340' => 'spe',
		'Sopen10g011040' => 'spe',
		'Sopen10g013650' => 'spe',
		'Sopen10g014130' => 'spe',
		'Sopen10g014140' => 'spe',
		'Sopen10g014760' => 'spe',
		'Sopen10g015080' => 'spe',
		'Sopen10g015830' => 'spe',
		'Sopen10g018240' => 'spe',
		'Sopen10g018300' => 'spe',
		'Sopen10g018350' => 'spe',
		'Sopen10g018460' => 'spe',
		'Sopen10g018670' => 'spe',
		'Sopen10g019040' => 'spe',
		'Sopen10g019330' => 'spe',
		'Sopen10g019340' => 'spe',
		'Sopen10g019360' => 'spe',
		'Sopen10g019370' => 'spe',
		'Sopen10g020620' => 'spe',
		'Sopen10g021550' => 'spe',
		'Sopen10g022160' => 'spe',
		'Sopen10g023540' => 'spe',
		'Sopen10g023570' => 'spe',
		'Sopen10g023580' => 'spe',
		'Sopen10g023600' => 'spe',
		'Sopen10g023620' => 'spe',
		'Sopen10g023650' => 'spe',
		'Sopen10g024800' => 'spe',
		'Sopen10g026170' => 'spe',
		'Sopen11g007790' => 'spe',
		'Sopen11g010170' => 'spe',
		'Sopen11g010580' => 'spe',
		'Sopen11g013420' => 'spe',
		'Sopen11g016330' => 'spe',
		'Sopen11g017010' => 'spe',
		'Sopen11g018110' => 'spe',
		'Sopen11g018960' => 'spe',
		'Sopen11g019000' => 'spe',
		'Sopen11g019970' => 'spe',
		'Sopen11g020340' => 'spe',
		'Sopen11g020970' => 'spe',
		'Sopen12g008510' => 'spe',
		'Sopen12g008910' => 'spe',
		'Sopen12g009010' => 'spe',
		'Sopen12g009120' => 'spe',
		'Sopen12g009340' => 'spe',
		'Sopen12g009580' => 'spe',
		'Sopen12g010190' => 'spe',
		'Sopen12g010320' => 'spe',
		'Sopen12g010370' => 'spe',
		'Sopen12g012140' => 'spe',
		'Sopen12g012700' => 'spe',
		'Sopen12g013490' => 'spe',
		'Sopen12g014290' => 'spe',
		'Sopen12g015060' => 'spe',
		'Sopen12g015610' => 'spe',
		'Sopen12g018380' => 'spe',
		'Sopen12g019150' => 'spe',
		'Sopen12g020560' => 'spe',
		'Sopen12g023320' => 'spe',
		'Sp3g24190' => 'spa',
		'Sp4g07270' => 'spa',
		'Sp4g07530' => 'spa',
		'Sp4g07670' => 'spa',
		'Sp6g09360' => 'spa',
		'Sp7g04180' => 'spa',
		'Sp7g04980' => 'spa',
		'Sp7g08200' => 'spa',
		'Sp7g09660' => 'spa',
		'SpUn0081_0010' => 'spa',
		'THA.LOC104803417' => 'tha',
		'THA.LOC104817059' => 'tha',
		'Thecc.01G188700' => 'tca',
		'Thecc.05G106700' => 'tca',
		'Thecc.06G068800' => 'tca',
		'Thecc.07G189100' => 'tca',
		'Thecc.09G172800' => 'tca',
		'Thhalv10023044m.g' => 'esa',
		'Thhalv10023881m.g' => 'esa',
		'Thhalv10024067m.g' => 'esa'
	),
	'gf_id' => 'HOM05D000691',
	'gf_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'gf_types_configuration' => array(
		'HOMFAM' => array(
			'order' => '1',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		),
		'ORTHOFAM' => array(
			'order' => '2',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		)
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'allow_async_use' => true,
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D000691'
	),
	'data_identifier' => 'HOM05D000691',
	'data_type' => 'gf_id'
)
$sidebar_info = array(
	'gf_id' => 'HOM05D000691',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '827',
	'num_species' => '39'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$gf_genes = array(
	'Ah.01g012340' => 'amhyb',
	'Ah.01g013530' => 'amhyb',
	'Ah.03g143080' => 'amhyb',
	'Ah.06g186750' => 'amhyb',
	'Ah.06g186800' => 'amhyb',
	'Ah.07g200050' => 'amhyb',
	'Ah.08g209110' => 'amhyb',
	'Ah.09g229600' => 'amhyb',
	'Ah.09g229610' => 'amhyb',
	'Ah.10g026490' => 'amhyb',
	'Ah.12g065350' => 'amhyb',
	'Ah.13g069310' => 'amhyb',
	'Ah.14g080130' => 'amhyb',
	'Ah.14g081130' => 'amhyb',
	'Ah.14g081140' => 'amhyb',
	'Ah.16g109160' => 'amhyb',
	'Ah.16g109170' => 'amhyb',
	'Ah.16g109370' => 'amhyb',
	'AL3G47720' => 'aly',
	'ATR0012G060' => 'atr',
	'ATR0026G029' => 'atr',
	'ATR0193G043' => 'atr',
	'ATR0561G076' => 'atr',
	'ATR0561G181' => 'atr',
	'ATR0568G014' => 'atr',
	'ATR0568G114' => 'atr',
	'ATR0620G039' => 'atr',
	'ATR0629G125' => 'atr',
	'ATR0661G583' => 'atr',
	'ATR0686G019' => 'atr',
	'ATR0693G232' => 'atr',
	'ATR0697G104' => 'atr',
	'ATR0789G146' => 'atr',
	'ATR0794G066' => 'atr',
	'ATR1127G127' => 'atr',
	'ATR1131G040' => 'atr',
	'ATR1134G004' => 'atr',
	'ATR1134G095' => 'atr',
	'ATR1152G110' => 'atr',
	'ATR1153G065' => 'atr',
	'Atru.chr3.2296' => 'acertr',
	'AUR62000692' => 'cqu',
	'AUR62001473' => 'cqu',
	'AUR62001812' => 'cqu',
	'AUR62002706' => 'cqu',
	'AUR62003904' => 'cqu',
	'AUR62003905' => 'cqu',
	'AUR62004840' => 'cqu',
	'AUR62005160' => 'cqu',
	'AUR62005604' => 'cqu',
	'AUR62005891' => 'cqu',
	'AUR62007290' => 'cqu',
	'AUR62007502' => 'cqu',
	'AUR62007923' => 'cqu',
	'AUR62009972' => 'cqu',
	'AUR62010488' => 'cqu',
	'AUR62010643' => 'cqu',
	'AUR62012637' => 'cqu',
	'AUR62013492' => 'cqu',
	'AUR62014239' => 'cqu',
	'AUR62014878' => 'cqu',
	'AUR62015857' => 'cqu',
	'AUR62016224' => 'cqu',
	'AUR62017430' => 'cqu',
	'AUR62017467' => 'cqu',
	'AUR62018234' => 'cqu',
	'AUR62019060' => 'cqu',
	'AUR62019607' => 'cqu',
	'AUR62019661' => 'cqu',
	'AUR62022775' => 'cqu',
	'AUR62023603' => 'cqu',
	'AUR62024563' => 'cqu',
	'AUR62026199' => 'cqu',
	'AUR62026905' => 'cqu',
	'AUR62028639' => 'cqu',
	'AUR62029168' => 'cqu',
	'AUR62029551' => 'cqu',
	'AUR62029860' => 'cqu',
	'AUR62030164' => 'cqu',
	'AUR62031208' => 'cqu',
	'AUR62031287' => 'cqu',
	'AUR62031817' => 'cqu',
	'AUR62032126' => 'cqu',
	'AUR62032358' => 'cqu',
	'AUR62032884' => 'cqu',
	'AUR62032892' => 'cqu',
	'AUR62033082' => 'cqu',
	'AUR62033100' => 'cqu',
	'AUR62033255' => 'cqu',
	'AUR62033698' => 'cqu',
	'AUR62033757' => 'cqu',
	'AUR62034760' => 'cqu',
	'AUR62034860' => 'cqu',
	'AUR62035179' => 'cqu',
	'AUR62035881' => 'cqu',
	'AUR62036824' => 'cqu',
	'AUR62036876' => 'cqu',
	'AUR62037319' => 'cqu',
	'AUR62037362' => 'cqu',
	'AUR62037541' => 'cqu',
	'AUR62037853' => 'cqu',
	'AUR62038299' => 'cqu',
	'AUR62038563' => 'cqu',
	'AUR62038564' => 'cqu',
	'AUR62038594' => 'cqu',
	'AUR62038792' => 'cqu',
	'AUR62038947' => 'cqu',
	'AUR62039030' => 'cqu',
	'AUR62039231' => 'cqu',
	'AUR62039452' => 'cqu',
	'AUR62040334' => 'cqu',
	'AUR62040869' => 'cqu',
	'AUR62040870' => 'cqu',
	'AUR62040916' => 'cqu',
	'AUR62041199' => 'cqu',
	'AUR62041334' => 'cqu',
	'AUR62041608' => 'cqu',
	'AUR62041609' => 'cqu',
	'AUR62041833' => 'cqu',
	'AUR62041834' => 'cqu',
	'AUR62042054' => 'cqu',
	'AUR62042134' => 'cqu',
	'AUR62042236' => 'cqu',
	'AUR62042281' => 'cqu',
	'AUR62042593' => 'cqu',
	'AUR62042653' => 'cqu',
	'AUR62043025' => 'cqu',
	'AUR62043026' => 'cqu',
	'AUR62043063' => 'cqu',
	'AUR62043091' => 'cqu',
	'AUR62043320' => 'cqu',
	'BolC5t32558H' => 'bol',
	'CAN.G1036.12' => 'can',
	'CAN.G1432.23' => 'can',
	'CAN.G159.19' => 'can',
	'CAN.G4114.1' => 'can',
	'CAN.G492.85' => 'can',
	'CAN.G500.95' => 'can',
	'CAN.G93.31' => 'can',
	'CiPaw.04G054900' => 'cil',
	'CiPaw.05G045400' => 'cil',
	'CiPaw.15G094100' => 'cil',
	'ClCG00G000700' => 'cla',
	'ClCG00G000780' => 'cla',
	'ClCG01G012280' => 'cla',
	'ClCG02G006140' => 'cla',
	'ClCG02G009810' => 'cla',
	'ClCG03G010170' => 'cla',
	'ClCG03G010260' => 'cla',
	'ClCG04G000770' => 'cla',
	'ClCG05G013980' => 'cla',
	'ClCG06G009110' => 'cla',
	'ClCG06G009120' => 'cla',
	'ClCG08G002190' => 'cla',
	'ClCG09G013830' => 'cla',
	'ClCG10G006760' => 'cla',
	'ClCG11G007310' => 'cla',
	'COL.COLO4_16141' => 'col',
	'Cpa.g.sc202.2' => 'cpa',
	'Cpa.g.sc76.18' => 'cpa',
	'CsaV3_1G031080' => 'csa',
	'CsaV3_4G011870' => 'csa',
	'CsaV3_4G014860' => 'csa',
	'CsaV3_4G021860' => 'csa',
	'CsaV3_6G009880' => 'csa',
	'CsaV3_7G021240' => 'csa',
	'CsaV3_UNG240600' => 'csa',
	'CSS0003516' => 'camsi',
	'CSS0013023' => 'camsi',
	'CSS0017680' => 'camsi',
	'CSS0018551' => 'camsi',
	'CSS0026792' => 'camsi',
	'CSS0028271' => 'camsi',
	'CSS0033603' => 'camsi',
	'CSS0040789' => 'camsi',
	'CSS0045068' => 'camsi',
	'CSS0045803' => 'camsi',
	'Dinv10528' => 'din',
	'Duzib116G0875' => 'dzi',
	'Duzib128G0055' => 'dzi',
	'EL10Ac1g02377' => 'bvu',
	'EL10Ac1g02378' => 'bvu',
	'EL10Ac2g03486' => 'bvu',
	'EL10Ac2g03487' => 'bvu',
	'EL10Ac3g05722' => 'bvu',
	'EL10Ac3g06186' => 'bvu',
	'EL10Ac5g11258' => 'bvu',
	'EL10Ac6g13831' => 'bvu',
	'EL10Ac6g14162' => 'bvu',
	'EL10Ac6g14316' => 'bvu',
	'EL10Ac6g14317' => 'bvu',
	'EL10Ac6g14588' => 'bvu',
	'EL10Ac7g16302' => 'bvu',
	'EL10Ac7g16543' => 'bvu',
	'EL10Ac8g18762' => 'bvu',
	'EL10Ac9g20847' => 'bvu',
	'EL10As7g23731' => 'bvu',
	'EL10As7g23732' => 'bvu',
	'FvH4_1g23713' => 'fve',
	'FvH4_2g00261' => 'fve',
	'FvH4_2g00262' => 'fve',
	'FvH4_2g15681' => 'fve',
	'FvH4_2g17851' => 'fve',
	'FvH4_3g10531' => 'fve',
	'FvH4_3g33536' => 'fve',
	'FvH4_4g03471' => 'fve',
	'FvH4_4g19351' => 'fve',
	'FvH4_4g34281' => 'fve',
	'FvH4_5g03811' => 'fve',
	'FvH4_5g03812' => 'fve',
	'FvH4_5g11822' => 'fve',
	'FvH4_5g31701' => 'fve',
	'FvH4_6g12161' => 'fve',
	'FvH4_6g15222' => 'fve',
	'FvH4_6g15223' => 'fve',
	'FvH4_6g19301' => 'fve',
	'FvH4_6g33011' => 'fve',
	'FvH4_6g50161' => 'fve',
	'FvH4_7g04123' => 'fve',
	'FvH4_c7g00010' => 'fve',
	'Gorai.012G165300' => 'gra',
	'HanXRQChr00c0452g0574871' => 'han',
	'HanXRQChr01g0029471' => 'han',
	'HanXRQChr05g0133501' => 'han',
	'HanXRQChr10g0280141' => 'han',
	'HanXRQChr10g0280631' => 'han',
	'HanXRQChr13g0409991' => 'han',
	'HanXRQChr15g0468361' => 'han',
	'Hma1.2p1_0021F.1_g014270' => 'hma',
	'Hma1.2p1_0026F.1_g016730' => 'hma',
	'Hma1.2p1_0177F.1_g077930' => 'hma',
	'Hma1.2p1_0370F.1_g137540' => 'hma',
	'Hma1.2p1_0637F.1_g193600' => 'hma',
	'Hma1.2p1_1045F.1_g251360' => 'hma',
	'Hma1.2p1_1168F.1_g263120' => 'hma',
	'Hma1.2p1_1640F.1_g295040' => 'hma',
	'Hma1.2p1_2467F.1_g322660' => 'hma',
	'Hund01785' => 'sun',
	'Hund04739' => 'sun',
	'Hund07717' => 'sun',
	'Hund08060' => 'sun',
	'Hund08734' => 'sun',
	'Hund10876' => 'sun',
	'Hund14991' => 'sun',
	'Hund15051' => 'sun',
	'Hund15082' => 'sun',
	'Hund17998' => 'sun',
	'Hund18526' => 'sun',
	'Hund19828' => 'sun',
	'Hund23384' => 'sun',
	'Hund26399' => 'sun',
	'Hund28766' => 'sun',
	'Hund28768' => 'sun',
	'Lj1A487G33' => 'lonja',
	'Lj1A487G34' => 'lonja',
	'Lj1A489G15' => 'lonja',
	'Lj1C1113T3' => 'lonja',
	'Lj1C3T4' => 'lonja',
	'Lj1C763G4' => 'lonja',
	'Lj1P195T27' => 'lonja',
	'Lj1P573T13' => 'lonja',
	'Lj1P895T45' => 'lonja',
	'Lj1P995G28' => 'lonja',
	'Lj2A1125G46' => 'lonja',
	'Lj2C116T7' => 'lonja',
	'Lj2P295T30' => 'lonja',
	'Lj2P476T23' => 'lonja',
	'Lj2P603T27' => 'lonja',
	'Lj2P609T17' => 'lonja',
	'Lj2P727T24' => 'lonja',
	'Lj3C273T2' => 'lonja',
	'Lj3C644G3' => 'lonja',
	'Lj3C644G4' => 'lonja',
	'Lj3P463T4' => 'lonja',
	'Lj3P545T31' => 'lonja',
	'Lj3P820T55' => 'lonja',
	'Lj4C260T12' => 'lonja',
	'Lj4C714G8' => 'lonja',
	'Lj4P131T14' => 'lonja',
	'Lj4P131T15' => 'lonja',
	'Lj5C102G24' => 'lonja',
	'Lj5P491T3' => 'lonja',
	'Lj5P564T12' => 'lonja',
	'Lj5P786T11' => 'lonja',
	'Lj6C97T3' => 'lonja',
	'Lj8P523T19' => 'lonja',
	'Lj9A24G30' => 'lonja',
	'Lj9A424G33' => 'lonja',
	'Lj9C219G10' => 'lonja',
	'Lj9P219T12' => 'lonja',
	'Lj9P705T22' => 'lonja',
	'Lju114C4T7' => 'lonja',
	'Lju1220C5G5' => 'lonja',
	'Lju2092C1G1' => 'lonja',
	'Lju2092C1T0' => 'lonja',
	'Lju225C6G6' => 'lonja',
	'Lju427C2T0' => 'lonja',
	'Lju50C9T4' => 'lonja',
	'Lju926C12T2' => 'lonja',
	'Manes.06G126602' => 'mes',
	'Manes.13G002614' => 'mes',
	'Manes.15G192966' => 'mes',
	'Manes.17G001483' => 'mes',
	'Manes.17G022547' => 'mes',
	'Manes.18G042825' => 'mes',
	'Manes.S026816' => 'mes',
	'Manes.S027416' => 'mes',
	'MBI02_g15234_MAGBIO' => 'mbi',
	'MBI16_g35584_MAGBIO' => 'mbi',
	'MELO3C008948.2' => 'cme',
	'MELO3C010395.2' => 'cme',
	'MELO3C010396.2' => 'cme',
	'MELO3C015759.2' => 'cme',
	'MELO3C022607.2' => 'cme',
	'MELO3C028897.2' => 'cme',
	'Oeu000188.1' => 'oeu',
	'Oeu002226.1' => 'oeu',
	'Oeu003087.1' => 'oeu',
	'Oeu003392.1' => 'oeu',
	'Oeu003523.1' => 'oeu',
	'Oeu003524.1' => 'oeu',
	'Oeu003528.1' => 'oeu',
	'Oeu003547.2' => 'oeu',
	'Oeu004677.1' => 'oeu',
	'Oeu005362.1' => 'oeu',
	'Oeu005833.1' => 'oeu',
	'Oeu005834.1' => 'oeu',
	'Oeu006751.1' => 'oeu',
	'Oeu007084.1' => 'oeu',
	'Oeu007264.1' => 'oeu',
	'Oeu008153.1' => 'oeu',
	'Oeu008228.1' => 'oeu',
	'Oeu008229.1' => 'oeu',
	'Oeu009580.1' => 'oeu',
	'Oeu010110.1' => 'oeu',
	'Oeu011704.1' => 'oeu',
	'Oeu011912.1' => 'oeu',
	'Oeu012057.1' => 'oeu',
	'Oeu012157.1' => 'oeu',
	'Oeu013775.1' => 'oeu',
	'Oeu013806.1' => 'oeu',
	'Oeu016457.1' => 'oeu',
	'Oeu016803.1' => 'oeu',
	'Oeu017243.2' => 'oeu',
	'Oeu017935.1' => 'oeu',
	'Oeu020246.2' => 'oeu',
	'Oeu020990.1' => 'oeu',
	'Oeu021941.1' => 'oeu',
	'Oeu021986.1' => 'oeu',
	'Oeu023578.1' => 'oeu',
	'Oeu024242.1' => 'oeu',
	'Oeu025087.1' => 'oeu',
	'Oeu025093.1' => 'oeu',
	'Oeu025412.1' => 'oeu',
	'Oeu025520.1' => 'oeu',
	'Oeu026473.1' => 'oeu',
	'Oeu027505.1' => 'oeu',
	'Oeu027530.1' => 'oeu',
	'Oeu027794.2' => 'oeu',
	'Oeu028951.1' => 'oeu',
	'Oeu029141.1' => 'oeu',
	'Oeu029231.4' => 'oeu',
	'Oeu029388.1' => 'oeu',
	'Oeu029673.1' => 'oeu',
	'Oeu029674.1' => 'oeu',
	'Oeu029748.1' => 'oeu',
	'Oeu030224.1' => 'oeu',
	'Oeu030243.1' => 'oeu',
	'Oeu030253.1' => 'oeu',
	'Oeu030414.1' => 'oeu',
	'Oeu030415.1' => 'oeu',
	'Oeu030472.1' => 'oeu',
	'Oeu031432.1' => 'oeu',
	'Oeu031697.1' => 'oeu',
	'Oeu032030.1' => 'oeu',
	'Oeu032031.1' => 'oeu',
	'Oeu032075.1' => 'oeu',
	'Oeu032737.1' => 'oeu',
	'Oeu033407.1' => 'oeu',
	'Oeu033485.1' => 'oeu',
	'Oeu034465.1' => 'oeu',
	'Oeu034951.1' => 'oeu',
	'Oeu036281.1' => 'oeu',
	'Oeu036931.1' => 'oeu',
	'Oeu036932.1' => 'oeu',
	'Oeu037340.1' => 'oeu',
	'Oeu037611.1' => 'oeu',
	'Oeu039205.1' => 'oeu',
	'Oeu039325.1' => 'oeu',
	'Oeu040999.1' => 'oeu',
	'Oeu041244.1' => 'oeu',
	'Oeu041682.1' => 'oeu',
	'Oeu041863.1' => 'oeu',
	'Oeu042345.1' => 'oeu',
	'Oeu042346.1' => 'oeu',
	'Oeu042671.1' => 'oeu',
	'Oeu043273.1' => 'oeu',
	'Oeu043573.1' => 'oeu',
	'Oeu044071.1' => 'oeu',
	'Oeu046813.1' => 'oeu',
	'Oeu048160.1' => 'oeu',
	'Oeu048162.1' => 'oeu',
	'Oeu048282.1' => 'oeu',
	'Oeu048297.1' => 'oeu',
	'Oeu048360.1' => 'oeu',
	'Oeu048565.1' => 'oeu',
	'Oeu049268.1' => 'oeu',
	'Oeu049465.1' => 'oeu',
	'Oeu049978.1' => 'oeu',
	'Oeu050628.1' => 'oeu',
	'Oeu050727.1' => 'oeu',
	'Oeu052065.1' => 'oeu',
	'Oeu052582.1' => 'oeu',
	'Oeu053090.1' => 'oeu',
	'Oeu053644.1' => 'oeu',
	'Oeu053713.1' => 'oeu',
	'Oeu055027.1' => 'oeu',
	'Oeu057741.1' => 'oeu',
	'Oeu058973.1' => 'oeu',
	'Oeu060366.1' => 'oeu',
	'Oeu061428.1' => 'oeu',
	'Oeu062087.1' => 'oeu',
	'Oeu062537.1' => 'oeu',
	'Oeu062538.1' => 'oeu',
	'Oeu064387.1' => 'oeu',
	'PGSC0003DMG400002344' => 'stu',
	'PGSC0003DMG400004046' => 'stu',
	'PGSC0003DMG400006418' => 'stu',
	'PGSC0003DMG400008410' => 'stu',
	'PGSC0003DMG400008620' => 'stu',
	'PGSC0003DMG400009504' => 'stu',
	'PGSC0003DMG400009845' => 'stu',
	'PGSC0003DMG400011177' => 'stu',
	'PGSC0003DMG400011629' => 'stu',
	'PGSC0003DMG400013586' => 'stu',
	'PGSC0003DMG400013599' => 'stu',
	'PGSC0003DMG400014534' => 'stu',
	'PGSC0003DMG400016055' => 'stu',
	'PGSC0003DMG400016736' => 'stu',
	'PGSC0003DMG400016866' => 'stu',
	'PGSC0003DMG400017701' => 'stu',
	'PGSC0003DMG400018448' => 'stu',
	'PGSC0003DMG400020751' => 'stu',
	'PGSC0003DMG400021088' => 'stu',
	'PGSC0003DMG400021387' => 'stu',
	'PGSC0003DMG400021640' => 'stu',
	'PGSC0003DMG400021704' => 'stu',
	'PGSC0003DMG400022155' => 'stu',
	'PGSC0003DMG400023544' => 'stu',
	'PGSC0003DMG400023564' => 'stu',
	'PGSC0003DMG400028558' => 'stu',
	'PGSC0003DMG400028618' => 'stu',
	'PGSC0003DMG400029149' => 'stu',
	'PGSC0003DMG400029979' => 'stu',
	'PGSC0003DMG400030069' => 'stu',
	'PGSC0003DMG400031272' => 'stu',
	'PGSC0003DMG400034656' => 'stu',
	'PGSC0003DMG400035151' => 'stu',
	'PGSC0003DMG400035741' => 'stu',
	'PGSC0003DMG400036100' => 'stu',
	'PGSC0003DMG400037683' => 'stu',
	'PGSC0003DMG400038046' => 'stu',
	'PGSC0003DMG400040121' => 'stu',
	'PGSC0003DMG400042113' => 'stu',
	'PGSC0003DMG400042218' => 'stu',
	'PGSC0003DMG400044188' => 'stu',
	'PGSC0003DMG400044323' => 'stu',
	'PGSC0003DMG400045014' => 'stu',
	'PGSC0003DMG400045177' => 'stu',
	'PGSC0003DMG400047199' => 'stu',
	'Potri.017G071366' => 'ptr',
	'RcHm_v2.0_Chr2g0137481' => 'rch',
	'Sc20g0003180' => 'sci',
	'SEGI_00305' => 'sgi',
	'SEGI_02246' => 'sgi',
	'SEGI_03696' => 'sgi',
	'SEGI_05490' => 'sgi',
	'SEGI_05682' => 'sgi',
	'SEGI_05900' => 'sgi',
	'SEGI_06517' => 'sgi',
	'SEGI_12587' => 'sgi',
	'SEGI_13129' => 'sgi',
	'SEGI_16935' => 'sgi',
	'SEGI_18008' => 'sgi',
	'SEGI_18224' => 'sgi',
	'SEGI_20188' => 'sgi',
	'SEGI_20772' => 'sgi',
	'SEGI_20842' => 'sgi',
	'SEGI_22270' => 'sgi',
	'SEGI_22705' => 'sgi',
	'SEGI_23638' => 'sgi',
	'SEGI_23928' => 'sgi',
	'SEGI_24790' => 'sgi',
	'SEGI_28421' => 'sgi',
	'SEGI_28832' => 'sgi',
	'SEGI_29884' => 'sgi',
	'SEGI_30829' => 'sgi',
	'SEGI_35046' => 'sgi',
	'SEGI_35582' => 'sgi',
	'SEGI_37882' => 'sgi',
	'SEGI_39680' => 'sgi',
	'SEGI_40069' => 'sgi',
	'SEGI_40087' => 'sgi',
	'SEGI_41606' => 'sgi',
	'SGA_v2.0_scaffold50G18578' => 'sas',
	'SHI00293' => 'shi',
	'SHI00389' => 'shi',
	'SHI00445' => 'shi',
	'SHI01000' => 'shi',
	'SHI01503' => 'shi',
	'SHI01718' => 'shi',
	'SHI03454' => 'shi',
	'SHI03493' => 'shi',
	'SHI03494' => 'shi',
	'SHI03628' => 'shi',
	'SHI04457' => 'shi',
	'SHI04691' => 'shi',
	'SHI04829' => 'shi',
	'SHI05225' => 'shi',
	'SHI06326' => 'shi',
	'SHI06505' => 'shi',
	'SHI06770' => 'shi',
	'SHI07388' => 'shi',
	'SHI07582' => 'shi',
	'SHI07583' => 'shi',
	'SHI08271' => 'shi',
	'SHI10619' => 'shi',
	'SHI10892' => 'shi',
	'SHI10910' => 'shi',
	'SHI10911' => 'shi',
	'SHI14326' => 'shi',
	'SHI14681' => 'shi',
	'SHI15017' => 'shi',
	'SHI15096' => 'shi',
	'SHI15120' => 'shi',
	'SHI15274' => 'shi',
	'SHI16232' => 'shi',
	'SHI16811' => 'shi',
	'SHI17386' => 'shi',
	'SHI17926' => 'shi',
	'SHI18293' => 'shi',
	'SHI20489' => 'shi',
	'SHI20658' => 'shi',
	'SHI20663' => 'shi',
	'SHI21566' => 'shi',
	'SHI22547' => 'shi',
	'SHI22708' => 'shi',
	'SHI22709' => 'shi',
	'SHI22878' => 'shi',
	'SHI22879' => 'shi',
	'SHI23024' => 'shi',
	'SHI25053' => 'shi',
	'SHI25076' => 'shi',
	'SHI25116' => 'shi',
	'SHI25381' => 'shi',
	'SHI25535' => 'shi',
	'SHI25740' => 'shi',
	'SHI25991' => 'shi',
	'SHI26344' => 'shi',
	'SHI26345' => 'shi',
	'SHI27097' => 'shi',
	'SHI27140' => 'shi',
	'SHI27178' => 'shi',
	'SHI27207' => 'shi',
	'SHI27225' => 'shi',
	'SHI27734' => 'shi',
	'SHI27806' => 'shi',
	'SHI28576' => 'shi',
	'SHI29081' => 'shi',
	'SHI30038' => 'shi',
	'SHI30394' => 'shi',
	'SHI30652' => 'shi',
	'SHI32154' => 'shi',
	'SHI32205' => 'shi',
	'SHI32365' => 'shi',
	'SHI32439' => 'shi',
	'SHI32505' => 'shi',
	'SHI32626' => 'shi',
	'SHI32714' => 'shi',
	'SHI32715' => 'shi',
	'SHI32716' => 'shi',
	'SHI33118' => 'shi',
	'SHI33318' => 'shi',
	'SHI33373' => 'shi',
	'SHI33512' => 'shi',
	'SHI33625' => 'shi',
	'SHI34327' => 'shi',
	'SHI35604' => 'shi',
	'SHI36119' => 'shi',
	'SHI36120' => 'shi',
	'SHI44959' => 'shi',
	'SHI46406' => 'shi',
	'SHI48191' => 'shi',
	'SHI48192' => 'shi',
	'Solyc10g150111.1' => 'sly',
	'Solyc12g062340.2' => 'sly',
	'Sopen00g001750' => 'spe',
	'Sopen00g001820' => 'spe',
	'Sopen00g001830' => 'spe',
	'Sopen00g001890' => 'spe',
	'Sopen00g002240' => 'spe',
	'Sopen00g003950' => 'spe',
	'Sopen00g004130' => 'spe',
	'Sopen00g004810' => 'spe',
	'Sopen00g005120' => 'spe',
	'Sopen00g005190' => 'spe',
	'Sopen00g007000' => 'spe',
	'Sopen00g007210' => 'spe',
	'Sopen00g012840' => 'spe',
	'Sopen00g013060' => 'spe',
	'Sopen00g013610' => 'spe',
	'Sopen00g013630' => 'spe',
	'Sopen01g004610' => 'spe',
	'Sopen01g007660' => 'spe',
	'Sopen01g007750' => 'spe',
	'Sopen01g007760' => 'spe',
	'Sopen01g007770' => 'spe',
	'Sopen01g007860' => 'spe',
	'Sopen01g009130' => 'spe',
	'Sopen01g009820' => 'spe',
	'Sopen01g011240' => 'spe',
	'Sopen01g012740' => 'spe',
	'Sopen01g013840' => 'spe',
	'Sopen01g013850' => 'spe',
	'Sopen01g016140' => 'spe',
	'Sopen01g016150' => 'spe',
	'Sopen01g016830' => 'spe',
	'Sopen01g017260' => 'spe',
	'Sopen01g019000' => 'spe',
	'Sopen01g019690' => 'spe',
	'Sopen01g022160' => 'spe',
	'Sopen01g024000' => 'spe',
	'Sopen01g024670' => 'spe',
	'Sopen01g024770' => 'spe',
	'Sopen01g024900' => 'spe',
	'Sopen01g025130' => 'spe',
	'Sopen01g026370' => 'spe',
	'Sopen01g041640' => 'spe',
	'Sopen01g046930' => 'spe',
	'Sopen02g001360' => 'spe',
	'Sopen02g002010' => 'spe',
	'Sopen02g003600' => 'spe',
	'Sopen02g003730' => 'spe',
	'Sopen02g005430' => 'spe',
	'Sopen02g005510' => 'spe',
	'Sopen02g006840' => 'spe',
	'Sopen02g007390' => 'spe',
	'Sopen02g007420' => 'spe',
	'Sopen02g007540' => 'spe',
	'Sopen02g007920' => 'spe',
	'Sopen02g008960' => 'spe',
	'Sopen02g009450' => 'spe',
	'Sopen02g009460' => 'spe',
	'Sopen02g011320' => 'spe',
	'Sopen02g012680' => 'spe',
	'Sopen02g018090' => 'spe',
	'Sopen02g022140' => 'spe',
	'Sopen03g010330' => 'spe',
	'Sopen03g013130' => 'spe',
	'Sopen03g013180' => 'spe',
	'Sopen03g013230' => 'spe',
	'Sopen03g014110' => 'spe',
	'Sopen03g015260' => 'spe',
	'Sopen03g015790' => 'spe',
	'Sopen03g018360' => 'spe',
	'Sopen03g024470' => 'spe',
	'Sopen03g026800' => 'spe',
	'Sopen04g003180' => 'spe',
	'Sopen04g008260' => 'spe',
	'Sopen04g010320' => 'spe',
	'Sopen04g011020' => 'spe',
	'Sopen04g011200' => 'spe',
	'Sopen04g011280' => 'spe',
	'Sopen04g021910' => 'spe',
	'Sopen04g023870' => 'spe',
	'Sopen05g009880' => 'spe',
	'Sopen05g011580' => 'spe',
	'Sopen05g012230' => 'spe',
	'Sopen05g012500' => 'spe',
	'Sopen05g012560' => 'spe',
	'Sopen05g012570' => 'spe',
	'Sopen05g012760' => 'spe',
	'Sopen05g013710' => 'spe',
	'Sopen05g015050' => 'spe',
	'Sopen05g026090' => 'spe',
	'Sopen05g028020' => 'spe',
	'Sopen05g028610' => 'spe',
	'Sopen05g029300' => 'spe',
	'Sopen06g005520' => 'spe',
	'Sopen06g006750' => 'spe',
	'Sopen06g008160' => 'spe',
	'Sopen06g009120' => 'spe',
	'Sopen06g013550' => 'spe',
	'Sopen06g015340' => 'spe',
	'Sopen06g018330' => 'spe',
	'Sopen06g021630' => 'spe',
	'Sopen06g021650' => 'spe',
	'Sopen07g006730' => 'spe',
	'Sopen07g008690' => 'spe',
	'Sopen07g008700' => 'spe',
	'Sopen07g008720' => 'spe',
	'Sopen07g008870' => 'spe',
	'Sopen07g009400' => 'spe',
	'Sopen07g009410' => 'spe',
	'Sopen07g009470' => 'spe',
	'Sopen07g009540' => 'spe',
	'Sopen07g011060' => 'spe',
	'Sopen07g011110' => 'spe',
	'Sopen07g011820' => 'spe',
	'Sopen07g013260' => 'spe',
	'Sopen07g014740' => 'spe',
	'Sopen07g015160' => 'spe',
	'Sopen07g015230' => 'spe',
	'Sopen07g016240' => 'spe',
	'Sopen07g017200' => 'spe',
	'Sopen07g017810' => 'spe',
	'Sopen07g019030' => 'spe',
	'Sopen07g020430' => 'spe',
	'Sopen07g021010' => 'spe',
	'Sopen07g021340' => 'spe',
	'Sopen07g022950' => 'spe',
	'Sopen07g027860' => 'spe',
	'Sopen08g007820' => 'spe',
	'Sopen08g009330' => 'spe',
	'Sopen08g012310' => 'spe',
	'Sopen08g012560' => 'spe',
	'Sopen08g014040' => 'spe',
	'Sopen08g014650' => 'spe',
	'Sopen08g017020' => 'spe',
	'Sopen08g018300' => 'spe',
	'Sopen08g020530' => 'spe',
	'Sopen09g008590' => 'spe',
	'Sopen09g008780' => 'spe',
	'Sopen09g011540' => 'spe',
	'Sopen09g011920' => 'spe',
	'Sopen09g014170' => 'spe',
	'Sopen09g016520' => 'spe',
	'Sopen09g021030' => 'spe',
	'Sopen09g023110' => 'spe',
	'Sopen09g024750' => 'spe',
	'Sopen09g025230' => 'spe',
	'Sopen09g025600' => 'spe',
	'Sopen09g034660' => 'spe',
	'Sopen10g006700' => 'spe',
	'Sopen10g009130' => 'spe',
	'Sopen10g009140' => 'spe',
	'Sopen10g009560' => 'spe',
	'Sopen10g010340' => 'spe',
	'Sopen10g011040' => 'spe',
	'Sopen10g013650' => 'spe',
	'Sopen10g014130' => 'spe',
	'Sopen10g014140' => 'spe',
	'Sopen10g014760' => 'spe',
	'Sopen10g015080' => 'spe',
	'Sopen10g015830' => 'spe',
	'Sopen10g018240' => 'spe',
	'Sopen10g018300' => 'spe',
	'Sopen10g018350' => 'spe',
	'Sopen10g018460' => 'spe',
	'Sopen10g018670' => 'spe',
	'Sopen10g019040' => 'spe',
	'Sopen10g019330' => 'spe',
	'Sopen10g019340' => 'spe',
	'Sopen10g019360' => 'spe',
	'Sopen10g019370' => 'spe',
	'Sopen10g020620' => 'spe',
	'Sopen10g021550' => 'spe',
	'Sopen10g022160' => 'spe',
	'Sopen10g023540' => 'spe',
	'Sopen10g023570' => 'spe',
	'Sopen10g023580' => 'spe',
	'Sopen10g023600' => 'spe',
	'Sopen10g023620' => 'spe',
	'Sopen10g023650' => 'spe',
	'Sopen10g024800' => 'spe',
	'Sopen10g026170' => 'spe',
	'Sopen11g007790' => 'spe',
	'Sopen11g010170' => 'spe',
	'Sopen11g010580' => 'spe',
	'Sopen11g013420' => 'spe',
	'Sopen11g016330' => 'spe',
	'Sopen11g017010' => 'spe',
	'Sopen11g018110' => 'spe',
	'Sopen11g018960' => 'spe',
	'Sopen11g019000' => 'spe',
	'Sopen11g019970' => 'spe',
	'Sopen11g020340' => 'spe',
	'Sopen11g020970' => 'spe',
	'Sopen12g008510' => 'spe',
	'Sopen12g008910' => 'spe',
	'Sopen12g009010' => 'spe',
	'Sopen12g009120' => 'spe',
	'Sopen12g009340' => 'spe',
	'Sopen12g009580' => 'spe',
	'Sopen12g010190' => 'spe',
	'Sopen12g010320' => 'spe',
	'Sopen12g010370' => 'spe',
	'Sopen12g012140' => 'spe',
	'Sopen12g012700' => 'spe',
	'Sopen12g013490' => 'spe',
	'Sopen12g014290' => 'spe',
	'Sopen12g015060' => 'spe',
	'Sopen12g015610' => 'spe',
	'Sopen12g018380' => 'spe',
	'Sopen12g019150' => 'spe',
	'Sopen12g020560' => 'spe',
	'Sopen12g023320' => 'spe',
	'Sp3g24190' => 'spa',
	'Sp4g07270' => 'spa',
	'Sp4g07530' => 'spa',
	'Sp4g07670' => 'spa',
	'Sp6g09360' => 'spa',
	'Sp7g04180' => 'spa',
	'Sp7g04980' => 'spa',
	'Sp7g08200' => 'spa',
	'Sp7g09660' => 'spa',
	'SpUn0081_0010' => 'spa',
	'THA.LOC104803417' => 'tha',
	'THA.LOC104817059' => 'tha',
	'Thecc.01G188700' => 'tca',
	'Thecc.05G106700' => 'tca',
	'Thecc.06G068800' => 'tca',
	'Thecc.07G189100' => 'tca',
	'Thecc.09G172800' => 'tca',
	'Thhalv10023044m.g' => 'esa',
	'Thhalv10023881m.g' => 'esa',
	'Thhalv10024067m.g' => 'esa'
)
$gf_id = 'HOM05D000691'
$gf_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$gf_types_configuration = array(
	'HOMFAM' => array(
		'order' => '1',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	),
	'ORTHOFAM' => array(
		'order' => '2',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	)
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$allow_async_use = true
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D000691'
)
$data_identifier = 'HOM05D000691'
$data_type = 'gf_id'
$species_gene_counts = array(
	'amhyb' => (int) 18,
	'aly' => (int) 1,
	'atr' => (int) 21,
	'acertr' => (int) 1,
	'cqu' => (int) 90,
	'bol' => (int) 1,
	'can' => (int) 7,
	'cil' => (int) 3,
	'cla' => (int) 15,
	'col' => (int) 1,
	'cpa' => (int) 2,
	'csa' => (int) 7,
	'camsi' => (int) 10,
	'din' => (int) 1,
	'dzi' => (int) 2,
	'bvu' => (int) 18,
	'fve' => (int) 22,
	'gra' => (int) 1,
	'han' => (int) 7,
	'hma' => (int) 9,
	'sun' => (int) 16,
	'lonja' => (int) 46,
	'mes' => (int) 8,
	'mbi' => (int) 2,
	'cme' => (int) 6,
	'oeu' => (int) 110,
	'stu' => (int) 45,
	'ptr' => (int) 1,
	'rch' => (int) 1,
	'sci' => (int) 1,
	'sgi' => (int) 31,
	'sas' => (int) 1,
	'shi' => (int) 89,
	'sly' => (int) 2,
	'spe' => (int) 211,
	'spa' => (int) 10,
	'tha' => (int) 2,
	'tca' => (int) 5,
	'esa' => (int) 3
)
$gf_gene_species = 'esa'
$gf_gene_id = 'Thhalv10024067m.g'
$species_info = array(
	'species' => 'cil',
	'common_name' => 'Carya illinoinensis',
	'tax_id' => '32201',
	'version' => 'v1.1'
)
$local_species = 'cil'
$disabled = ''
$selected = ''
$num_hits = (int) 0
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Analysis/custom_tree_creation.ctp, line 27
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933

Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]
Code Context
        $disabled    = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";

        $selected    = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";

        $num_hits    = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D000691',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '827',
		'num_species' => '39'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'gf_genes' => array(
		'Ah.01g012340' => 'amhyb',
		'Ah.01g013530' => 'amhyb',
		'Ah.03g143080' => 'amhyb',
		'Ah.06g186750' => 'amhyb',
		'Ah.06g186800' => 'amhyb',
		'Ah.07g200050' => 'amhyb',
		'Ah.08g209110' => 'amhyb',
		'Ah.09g229600' => 'amhyb',
		'Ah.09g229610' => 'amhyb',
		'Ah.10g026490' => 'amhyb',
		'Ah.12g065350' => 'amhyb',
		'Ah.13g069310' => 'amhyb',
		'Ah.14g080130' => 'amhyb',
		'Ah.14g081130' => 'amhyb',
		'Ah.14g081140' => 'amhyb',
		'Ah.16g109160' => 'amhyb',
		'Ah.16g109170' => 'amhyb',
		'Ah.16g109370' => 'amhyb',
		'AL3G47720' => 'aly',
		'ATR0012G060' => 'atr',
		'ATR0026G029' => 'atr',
		'ATR0193G043' => 'atr',
		'ATR0561G076' => 'atr',
		'ATR0561G181' => 'atr',
		'ATR0568G014' => 'atr',
		'ATR0568G114' => 'atr',
		'ATR0620G039' => 'atr',
		'ATR0629G125' => 'atr',
		'ATR0661G583' => 'atr',
		'ATR0686G019' => 'atr',
		'ATR0693G232' => 'atr',
		'ATR0697G104' => 'atr',
		'ATR0789G146' => 'atr',
		'ATR0794G066' => 'atr',
		'ATR1127G127' => 'atr',
		'ATR1131G040' => 'atr',
		'ATR1134G004' => 'atr',
		'ATR1134G095' => 'atr',
		'ATR1152G110' => 'atr',
		'ATR1153G065' => 'atr',
		'Atru.chr3.2296' => 'acertr',
		'AUR62000692' => 'cqu',
		'AUR62001473' => 'cqu',
		'AUR62001812' => 'cqu',
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		'AUR62003905' => 'cqu',
		'AUR62004840' => 'cqu',
		'AUR62005160' => 'cqu',
		'AUR62005604' => 'cqu',
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		'BolC5t32558H' => 'bol',
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		'ClCG09G013830' => 'cla',
		'ClCG10G006760' => 'cla',
		'ClCG11G007310' => 'cla',
		'COL.COLO4_16141' => 'col',
		'Cpa.g.sc202.2' => 'cpa',
		'Cpa.g.sc76.18' => 'cpa',
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		'CsaV3_6G009880' => 'csa',
		'CsaV3_7G021240' => 'csa',
		'CsaV3_UNG240600' => 'csa',
		'CSS0003516' => 'camsi',
		'CSS0013023' => 'camsi',
		'CSS0017680' => 'camsi',
		'CSS0018551' => 'camsi',
		'CSS0026792' => 'camsi',
		'CSS0028271' => 'camsi',
		'CSS0033603' => 'camsi',
		'CSS0040789' => 'camsi',
		'CSS0045068' => 'camsi',
		'CSS0045803' => 'camsi',
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		'FvH4_6g33011' => 'fve',
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		'FvH4_7g04123' => 'fve',
		'FvH4_c7g00010' => 'fve',
		'Gorai.012G165300' => 'gra',
		'HanXRQChr00c0452g0574871' => 'han',
		'HanXRQChr01g0029471' => 'han',
		'HanXRQChr05g0133501' => 'han',
		'HanXRQChr10g0280141' => 'han',
		'HanXRQChr10g0280631' => 'han',
		'HanXRQChr13g0409991' => 'han',
		'HanXRQChr15g0468361' => 'han',
		'Hma1.2p1_0021F.1_g014270' => 'hma',
		'Hma1.2p1_0026F.1_g016730' => 'hma',
		'Hma1.2p1_0177F.1_g077930' => 'hma',
		'Hma1.2p1_0370F.1_g137540' => 'hma',
		'Hma1.2p1_0637F.1_g193600' => 'hma',
		'Hma1.2p1_1045F.1_g251360' => 'hma',
		'Hma1.2p1_1168F.1_g263120' => 'hma',
		'Hma1.2p1_1640F.1_g295040' => 'hma',
		'Hma1.2p1_2467F.1_g322660' => 'hma',
		'Hund01785' => 'sun',
		'Hund04739' => 'sun',
		'Hund07717' => 'sun',
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		'Hund17998' => 'sun',
		'Hund18526' => 'sun',
		'Hund19828' => 'sun',
		'Hund23384' => 'sun',
		'Hund26399' => 'sun',
		'Hund28766' => 'sun',
		'Hund28768' => 'sun',
		'Lj1A487G33' => 'lonja',
		'Lj1A487G34' => 'lonja',
		'Lj1A489G15' => 'lonja',
		'Lj1C1113T3' => 'lonja',
		'Lj1C3T4' => 'lonja',
		'Lj1C763G4' => 'lonja',
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		'Lj3C273T2' => 'lonja',
		'Lj3C644G3' => 'lonja',
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		'Lj4C260T12' => 'lonja',
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		'Lj4P131T15' => 'lonja',
		'Lj5C102G24' => 'lonja',
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		'Lj9A424G33' => 'lonja',
		'Lj9C219G10' => 'lonja',
		'Lj9P219T12' => 'lonja',
		'Lj9P705T22' => 'lonja',
		'Lju114C4T7' => 'lonja',
		'Lju1220C5G5' => 'lonja',
		'Lju2092C1G1' => 'lonja',
		'Lju2092C1T0' => 'lonja',
		'Lju225C6G6' => 'lonja',
		'Lju427C2T0' => 'lonja',
		'Lju50C9T4' => 'lonja',
		'Lju926C12T2' => 'lonja',
		'Manes.06G126602' => 'mes',
		'Manes.13G002614' => 'mes',
		'Manes.15G192966' => 'mes',
		'Manes.17G001483' => 'mes',
		'Manes.17G022547' => 'mes',
		'Manes.18G042825' => 'mes',
		'Manes.S026816' => 'mes',
		'Manes.S027416' => 'mes',
		'MBI02_g15234_MAGBIO' => 'mbi',
		'MBI16_g35584_MAGBIO' => 'mbi',
		'MELO3C008948.2' => 'cme',
		'MELO3C010395.2' => 'cme',
		'MELO3C010396.2' => 'cme',
		'MELO3C015759.2' => 'cme',
		'MELO3C022607.2' => 'cme',
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		'Oeu048565.1' => 'oeu',
		'Oeu049268.1' => 'oeu',
		'Oeu049465.1' => 'oeu',
		'Oeu049978.1' => 'oeu',
		'Oeu050628.1' => 'oeu',
		'Oeu050727.1' => 'oeu',
		'Oeu052065.1' => 'oeu',
		'Oeu052582.1' => 'oeu',
		'Oeu053090.1' => 'oeu',
		'Oeu053644.1' => 'oeu',
		'Oeu053713.1' => 'oeu',
		'Oeu055027.1' => 'oeu',
		'Oeu057741.1' => 'oeu',
		'Oeu058973.1' => 'oeu',
		'Oeu060366.1' => 'oeu',
		'Oeu061428.1' => 'oeu',
		'Oeu062087.1' => 'oeu',
		'Oeu062537.1' => 'oeu',
		'Oeu062538.1' => 'oeu',
		'Oeu064387.1' => 'oeu',
		'PGSC0003DMG400002344' => 'stu',
		'PGSC0003DMG400004046' => 'stu',
		'PGSC0003DMG400006418' => 'stu',
		'PGSC0003DMG400008410' => 'stu',
		'PGSC0003DMG400008620' => 'stu',
		'PGSC0003DMG400009504' => 'stu',
		'PGSC0003DMG400009845' => 'stu',
		'PGSC0003DMG400011177' => 'stu',
		'PGSC0003DMG400011629' => 'stu',
		'PGSC0003DMG400013586' => 'stu',
		'PGSC0003DMG400013599' => 'stu',
		'PGSC0003DMG400014534' => 'stu',
		'PGSC0003DMG400016055' => 'stu',
		'PGSC0003DMG400016736' => 'stu',
		'PGSC0003DMG400016866' => 'stu',
		'PGSC0003DMG400017701' => 'stu',
		'PGSC0003DMG400018448' => 'stu',
		'PGSC0003DMG400020751' => 'stu',
		'PGSC0003DMG400021088' => 'stu',
		'PGSC0003DMG400021387' => 'stu',
		'PGSC0003DMG400021640' => 'stu',
		'PGSC0003DMG400021704' => 'stu',
		'PGSC0003DMG400022155' => 'stu',
		'PGSC0003DMG400023544' => 'stu',
		'PGSC0003DMG400023564' => 'stu',
		'PGSC0003DMG400028558' => 'stu',
		'PGSC0003DMG400028618' => 'stu',
		'PGSC0003DMG400029149' => 'stu',
		'PGSC0003DMG400029979' => 'stu',
		'PGSC0003DMG400030069' => 'stu',
		'PGSC0003DMG400031272' => 'stu',
		'PGSC0003DMG400034656' => 'stu',
		'PGSC0003DMG400035151' => 'stu',
		'PGSC0003DMG400035741' => 'stu',
		'PGSC0003DMG400036100' => 'stu',
		'PGSC0003DMG400037683' => 'stu',
		'PGSC0003DMG400038046' => 'stu',
		'PGSC0003DMG400040121' => 'stu',
		'PGSC0003DMG400042113' => 'stu',
		'PGSC0003DMG400042218' => 'stu',
		'PGSC0003DMG400044188' => 'stu',
		'PGSC0003DMG400044323' => 'stu',
		'PGSC0003DMG400045014' => 'stu',
		'PGSC0003DMG400045177' => 'stu',
		'PGSC0003DMG400047199' => 'stu',
		'Potri.017G071366' => 'ptr',
		'RcHm_v2.0_Chr2g0137481' => 'rch',
		'Sc20g0003180' => 'sci',
		'SEGI_00305' => 'sgi',
		'SEGI_02246' => 'sgi',
		'SEGI_03696' => 'sgi',
		'SEGI_05490' => 'sgi',
		'SEGI_05682' => 'sgi',
		'SEGI_05900' => 'sgi',
		'SEGI_06517' => 'sgi',
		'SEGI_12587' => 'sgi',
		'SEGI_13129' => 'sgi',
		'SEGI_16935' => 'sgi',
		'SEGI_18008' => 'sgi',
		'SEGI_18224' => 'sgi',
		'SEGI_20188' => 'sgi',
		'SEGI_20772' => 'sgi',
		'SEGI_20842' => 'sgi',
		'SEGI_22270' => 'sgi',
		'SEGI_22705' => 'sgi',
		'SEGI_23638' => 'sgi',
		'SEGI_23928' => 'sgi',
		'SEGI_24790' => 'sgi',
		'SEGI_28421' => 'sgi',
		'SEGI_28832' => 'sgi',
		'SEGI_29884' => 'sgi',
		'SEGI_30829' => 'sgi',
		'SEGI_35046' => 'sgi',
		'SEGI_35582' => 'sgi',
		'SEGI_37882' => 'sgi',
		'SEGI_39680' => 'sgi',
		'SEGI_40069' => 'sgi',
		'SEGI_40087' => 'sgi',
		'SEGI_41606' => 'sgi',
		'SGA_v2.0_scaffold50G18578' => 'sas',
		'SHI00293' => 'shi',
		'SHI00389' => 'shi',
		'SHI00445' => 'shi',
		'SHI01000' => 'shi',
		'SHI01503' => 'shi',
		'SHI01718' => 'shi',
		'SHI03454' => 'shi',
		'SHI03493' => 'shi',
		'SHI03494' => 'shi',
		'SHI03628' => 'shi',
		'SHI04457' => 'shi',
		'SHI04691' => 'shi',
		'SHI04829' => 'shi',
		'SHI05225' => 'shi',
		'SHI06326' => 'shi',
		'SHI06505' => 'shi',
		'SHI06770' => 'shi',
		'SHI07388' => 'shi',
		'SHI07582' => 'shi',
		'SHI07583' => 'shi',
		'SHI08271' => 'shi',
		'SHI10619' => 'shi',
		'SHI10892' => 'shi',
		'SHI10910' => 'shi',
		'SHI10911' => 'shi',
		'SHI14326' => 'shi',
		'SHI14681' => 'shi',
		'SHI15017' => 'shi',
		'SHI15096' => 'shi',
		'SHI15120' => 'shi',
		'SHI15274' => 'shi',
		'SHI16232' => 'shi',
		'SHI16811' => 'shi',
		'SHI17386' => 'shi',
		'SHI17926' => 'shi',
		'SHI18293' => 'shi',
		'SHI20489' => 'shi',
		'SHI20658' => 'shi',
		'SHI20663' => 'shi',
		'SHI21566' => 'shi',
		'SHI22547' => 'shi',
		'SHI22708' => 'shi',
		'SHI22709' => 'shi',
		'SHI22878' => 'shi',
		'SHI22879' => 'shi',
		'SHI23024' => 'shi',
		'SHI25053' => 'shi',
		'SHI25076' => 'shi',
		'SHI25116' => 'shi',
		'SHI25381' => 'shi',
		'SHI25535' => 'shi',
		'SHI25740' => 'shi',
		'SHI25991' => 'shi',
		'SHI26344' => 'shi',
		'SHI26345' => 'shi',
		'SHI27097' => 'shi',
		'SHI27140' => 'shi',
		'SHI27178' => 'shi',
		'SHI27207' => 'shi',
		'SHI27225' => 'shi',
		'SHI27734' => 'shi',
		'SHI27806' => 'shi',
		'SHI28576' => 'shi',
		'SHI29081' => 'shi',
		'SHI30038' => 'shi',
		'SHI30394' => 'shi',
		'SHI30652' => 'shi',
		'SHI32154' => 'shi',
		'SHI32205' => 'shi',
		'SHI32365' => 'shi',
		'SHI32439' => 'shi',
		'SHI32505' => 'shi',
		'SHI32626' => 'shi',
		'SHI32714' => 'shi',
		'SHI32715' => 'shi',
		'SHI32716' => 'shi',
		'SHI33118' => 'shi',
		'SHI33318' => 'shi',
		'SHI33373' => 'shi',
		'SHI33512' => 'shi',
		'SHI33625' => 'shi',
		'SHI34327' => 'shi',
		'SHI35604' => 'shi',
		'SHI36119' => 'shi',
		'SHI36120' => 'shi',
		'SHI44959' => 'shi',
		'SHI46406' => 'shi',
		'SHI48191' => 'shi',
		'SHI48192' => 'shi',
		'Solyc10g150111.1' => 'sly',
		'Solyc12g062340.2' => 'sly',
		'Sopen00g001750' => 'spe',
		'Sopen00g001820' => 'spe',
		'Sopen00g001830' => 'spe',
		'Sopen00g001890' => 'spe',
		'Sopen00g002240' => 'spe',
		'Sopen00g003950' => 'spe',
		'Sopen00g004130' => 'spe',
		'Sopen00g004810' => 'spe',
		'Sopen00g005120' => 'spe',
		'Sopen00g005190' => 'spe',
		'Sopen00g007000' => 'spe',
		'Sopen00g007210' => 'spe',
		'Sopen00g012840' => 'spe',
		'Sopen00g013060' => 'spe',
		'Sopen00g013610' => 'spe',
		'Sopen00g013630' => 'spe',
		'Sopen01g004610' => 'spe',
		'Sopen01g007660' => 'spe',
		'Sopen01g007750' => 'spe',
		'Sopen01g007760' => 'spe',
		'Sopen01g007770' => 'spe',
		'Sopen01g007860' => 'spe',
		'Sopen01g009130' => 'spe',
		'Sopen01g009820' => 'spe',
		'Sopen01g011240' => 'spe',
		'Sopen01g012740' => 'spe',
		'Sopen01g013840' => 'spe',
		'Sopen01g013850' => 'spe',
		'Sopen01g016140' => 'spe',
		'Sopen01g016150' => 'spe',
		'Sopen01g016830' => 'spe',
		'Sopen01g017260' => 'spe',
		'Sopen01g019000' => 'spe',
		'Sopen01g019690' => 'spe',
		'Sopen01g022160' => 'spe',
		'Sopen01g024000' => 'spe',
		'Sopen01g024670' => 'spe',
		'Sopen01g024770' => 'spe',
		'Sopen01g024900' => 'spe',
		'Sopen01g025130' => 'spe',
		'Sopen01g026370' => 'spe',
		'Sopen01g041640' => 'spe',
		'Sopen01g046930' => 'spe',
		'Sopen02g001360' => 'spe',
		'Sopen02g002010' => 'spe',
		'Sopen02g003600' => 'spe',
		'Sopen02g003730' => 'spe',
		'Sopen02g005430' => 'spe',
		'Sopen02g005510' => 'spe',
		'Sopen02g006840' => 'spe',
		'Sopen02g007390' => 'spe',
		'Sopen02g007420' => 'spe',
		'Sopen02g007540' => 'spe',
		'Sopen02g007920' => 'spe',
		'Sopen02g008960' => 'spe',
		'Sopen02g009450' => 'spe',
		'Sopen02g009460' => 'spe',
		'Sopen02g011320' => 'spe',
		'Sopen02g012680' => 'spe',
		'Sopen02g018090' => 'spe',
		'Sopen02g022140' => 'spe',
		'Sopen03g010330' => 'spe',
		'Sopen03g013130' => 'spe',
		'Sopen03g013180' => 'spe',
		'Sopen03g013230' => 'spe',
		'Sopen03g014110' => 'spe',
		'Sopen03g015260' => 'spe',
		'Sopen03g015790' => 'spe',
		'Sopen03g018360' => 'spe',
		'Sopen03g024470' => 'spe',
		'Sopen03g026800' => 'spe',
		'Sopen04g003180' => 'spe',
		'Sopen04g008260' => 'spe',
		'Sopen04g010320' => 'spe',
		'Sopen04g011020' => 'spe',
		'Sopen04g011200' => 'spe',
		'Sopen04g011280' => 'spe',
		'Sopen04g021910' => 'spe',
		'Sopen04g023870' => 'spe',
		'Sopen05g009880' => 'spe',
		'Sopen05g011580' => 'spe',
		'Sopen05g012230' => 'spe',
		'Sopen05g012500' => 'spe',
		'Sopen05g012560' => 'spe',
		'Sopen05g012570' => 'spe',
		'Sopen05g012760' => 'spe',
		'Sopen05g013710' => 'spe',
		'Sopen05g015050' => 'spe',
		'Sopen05g026090' => 'spe',
		'Sopen05g028020' => 'spe',
		'Sopen05g028610' => 'spe',
		'Sopen05g029300' => 'spe',
		'Sopen06g005520' => 'spe',
		'Sopen06g006750' => 'spe',
		'Sopen06g008160' => 'spe',
		'Sopen06g009120' => 'spe',
		'Sopen06g013550' => 'spe',
		'Sopen06g015340' => 'spe',
		'Sopen06g018330' => 'spe',
		'Sopen06g021630' => 'spe',
		'Sopen06g021650' => 'spe',
		'Sopen07g006730' => 'spe',
		'Sopen07g008690' => 'spe',
		'Sopen07g008700' => 'spe',
		'Sopen07g008720' => 'spe',
		'Sopen07g008870' => 'spe',
		'Sopen07g009400' => 'spe',
		'Sopen07g009410' => 'spe',
		'Sopen07g009470' => 'spe',
		'Sopen07g009540' => 'spe',
		'Sopen07g011060' => 'spe',
		'Sopen07g011110' => 'spe',
		'Sopen07g011820' => 'spe',
		'Sopen07g013260' => 'spe',
		'Sopen07g014740' => 'spe',
		'Sopen07g015160' => 'spe',
		'Sopen07g015230' => 'spe',
		'Sopen07g016240' => 'spe',
		'Sopen07g017200' => 'spe',
		'Sopen07g017810' => 'spe',
		'Sopen07g019030' => 'spe',
		'Sopen07g020430' => 'spe',
		'Sopen07g021010' => 'spe',
		'Sopen07g021340' => 'spe',
		'Sopen07g022950' => 'spe',
		'Sopen07g027860' => 'spe',
		'Sopen08g007820' => 'spe',
		'Sopen08g009330' => 'spe',
		'Sopen08g012310' => 'spe',
		'Sopen08g012560' => 'spe',
		'Sopen08g014040' => 'spe',
		'Sopen08g014650' => 'spe',
		'Sopen08g017020' => 'spe',
		'Sopen08g018300' => 'spe',
		'Sopen08g020530' => 'spe',
		'Sopen09g008590' => 'spe',
		'Sopen09g008780' => 'spe',
		'Sopen09g011540' => 'spe',
		'Sopen09g011920' => 'spe',
		'Sopen09g014170' => 'spe',
		'Sopen09g016520' => 'spe',
		'Sopen09g021030' => 'spe',
		'Sopen09g023110' => 'spe',
		'Sopen09g024750' => 'spe',
		'Sopen09g025230' => 'spe',
		'Sopen09g025600' => 'spe',
		'Sopen09g034660' => 'spe',
		'Sopen10g006700' => 'spe',
		'Sopen10g009130' => 'spe',
		'Sopen10g009140' => 'spe',
		'Sopen10g009560' => 'spe',
		'Sopen10g010340' => 'spe',
		'Sopen10g011040' => 'spe',
		'Sopen10g013650' => 'spe',
		'Sopen10g014130' => 'spe',
		'Sopen10g014140' => 'spe',
		'Sopen10g014760' => 'spe',
		'Sopen10g015080' => 'spe',
		'Sopen10g015830' => 'spe',
		'Sopen10g018240' => 'spe',
		'Sopen10g018300' => 'spe',
		'Sopen10g018350' => 'spe',
		'Sopen10g018460' => 'spe',
		'Sopen10g018670' => 'spe',
		'Sopen10g019040' => 'spe',
		'Sopen10g019330' => 'spe',
		'Sopen10g019340' => 'spe',
		'Sopen10g019360' => 'spe',
		'Sopen10g019370' => 'spe',
		'Sopen10g020620' => 'spe',
		'Sopen10g021550' => 'spe',
		'Sopen10g022160' => 'spe',
		'Sopen10g023540' => 'spe',
		'Sopen10g023570' => 'spe',
		'Sopen10g023580' => 'spe',
		'Sopen10g023600' => 'spe',
		'Sopen10g023620' => 'spe',
		'Sopen10g023650' => 'spe',
		'Sopen10g024800' => 'spe',
		'Sopen10g026170' => 'spe',
		'Sopen11g007790' => 'spe',
		'Sopen11g010170' => 'spe',
		'Sopen11g010580' => 'spe',
		'Sopen11g013420' => 'spe',
		'Sopen11g016330' => 'spe',
		'Sopen11g017010' => 'spe',
		'Sopen11g018110' => 'spe',
		'Sopen11g018960' => 'spe',
		'Sopen11g019000' => 'spe',
		'Sopen11g019970' => 'spe',
		'Sopen11g020340' => 'spe',
		'Sopen11g020970' => 'spe',
		'Sopen12g008510' => 'spe',
		'Sopen12g008910' => 'spe',
		'Sopen12g009010' => 'spe',
		'Sopen12g009120' => 'spe',
		'Sopen12g009340' => 'spe',
		'Sopen12g009580' => 'spe',
		'Sopen12g010190' => 'spe',
		'Sopen12g010320' => 'spe',
		'Sopen12g010370' => 'spe',
		'Sopen12g012140' => 'spe',
		'Sopen12g012700' => 'spe',
		'Sopen12g013490' => 'spe',
		'Sopen12g014290' => 'spe',
		'Sopen12g015060' => 'spe',
		'Sopen12g015610' => 'spe',
		'Sopen12g018380' => 'spe',
		'Sopen12g019150' => 'spe',
		'Sopen12g020560' => 'spe',
		'Sopen12g023320' => 'spe',
		'Sp3g24190' => 'spa',
		'Sp4g07270' => 'spa',
		'Sp4g07530' => 'spa',
		'Sp4g07670' => 'spa',
		'Sp6g09360' => 'spa',
		'Sp7g04180' => 'spa',
		'Sp7g04980' => 'spa',
		'Sp7g08200' => 'spa',
		'Sp7g09660' => 'spa',
		'SpUn0081_0010' => 'spa',
		'THA.LOC104803417' => 'tha',
		'THA.LOC104817059' => 'tha',
		'Thecc.01G188700' => 'tca',
		'Thecc.05G106700' => 'tca',
		'Thecc.06G068800' => 'tca',
		'Thecc.07G189100' => 'tca',
		'Thecc.09G172800' => 'tca',
		'Thhalv10023044m.g' => 'esa',
		'Thhalv10023881m.g' => 'esa',
		'Thhalv10024067m.g' => 'esa'
	),
	'gf_id' => 'HOM05D000691',
	'gf_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'gf_types_configuration' => array(
		'HOMFAM' => array(
			'order' => '1',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		),
		'ORTHOFAM' => array(
			'order' => '2',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		)
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'allow_async_use' => true,
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D000691'
	),
	'data_identifier' => 'HOM05D000691',
	'data_type' => 'gf_id'
)
$sidebar_info = array(
	'gf_id' => 'HOM05D000691',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '827',
	'num_species' => '39'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$gf_genes = array(
	'Ah.01g012340' => 'amhyb',
	'Ah.01g013530' => 'amhyb',
	'Ah.03g143080' => 'amhyb',
	'Ah.06g186750' => 'amhyb',
	'Ah.06g186800' => 'amhyb',
	'Ah.07g200050' => 'amhyb',
	'Ah.08g209110' => 'amhyb',
	'Ah.09g229600' => 'amhyb',
	'Ah.09g229610' => 'amhyb',
	'Ah.10g026490' => 'amhyb',
	'Ah.12g065350' => 'amhyb',
	'Ah.13g069310' => 'amhyb',
	'Ah.14g080130' => 'amhyb',
	'Ah.14g081130' => 'amhyb',
	'Ah.14g081140' => 'amhyb',
	'Ah.16g109160' => 'amhyb',
	'Ah.16g109170' => 'amhyb',
	'Ah.16g109370' => 'amhyb',
	'AL3G47720' => 'aly',
	'ATR0012G060' => 'atr',
	'ATR0026G029' => 'atr',
	'ATR0193G043' => 'atr',
	'ATR0561G076' => 'atr',
	'ATR0561G181' => 'atr',
	'ATR0568G014' => 'atr',
	'ATR0568G114' => 'atr',
	'ATR0620G039' => 'atr',
	'ATR0629G125' => 'atr',
	'ATR0661G583' => 'atr',
	'ATR0686G019' => 'atr',
	'ATR0693G232' => 'atr',
	'ATR0697G104' => 'atr',
	'ATR0789G146' => 'atr',
	'ATR0794G066' => 'atr',
	'ATR1127G127' => 'atr',
	'ATR1131G040' => 'atr',
	'ATR1134G004' => 'atr',
	'ATR1134G095' => 'atr',
	'ATR1152G110' => 'atr',
	'ATR1153G065' => 'atr',
	'Atru.chr3.2296' => 'acertr',
	'AUR62000692' => 'cqu',
	'AUR62001473' => 'cqu',
	'AUR62001812' => 'cqu',
	'AUR62002706' => 'cqu',
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	'SHI21566' => 'shi',
	'SHI22547' => 'shi',
	'SHI22708' => 'shi',
	'SHI22709' => 'shi',
	'SHI22878' => 'shi',
	'SHI22879' => 'shi',
	'SHI23024' => 'shi',
	'SHI25053' => 'shi',
	'SHI25076' => 'shi',
	'SHI25116' => 'shi',
	'SHI25381' => 'shi',
	'SHI25535' => 'shi',
	'SHI25740' => 'shi',
	'SHI25991' => 'shi',
	'SHI26344' => 'shi',
	'SHI26345' => 'shi',
	'SHI27097' => 'shi',
	'SHI27140' => 'shi',
	'SHI27178' => 'shi',
	'SHI27207' => 'shi',
	'SHI27225' => 'shi',
	'SHI27734' => 'shi',
	'SHI27806' => 'shi',
	'SHI28576' => 'shi',
	'SHI29081' => 'shi',
	'SHI30038' => 'shi',
	'SHI30394' => 'shi',
	'SHI30652' => 'shi',
	'SHI32154' => 'shi',
	'SHI32205' => 'shi',
	'SHI32365' => 'shi',
	'SHI32439' => 'shi',
	'SHI32505' => 'shi',
	'SHI32626' => 'shi',
	'SHI32714' => 'shi',
	'SHI32715' => 'shi',
	'SHI32716' => 'shi',
	'SHI33118' => 'shi',
	'SHI33318' => 'shi',
	'SHI33373' => 'shi',
	'SHI33512' => 'shi',
	'SHI33625' => 'shi',
	'SHI34327' => 'shi',
	'SHI35604' => 'shi',
	'SHI36119' => 'shi',
	'SHI36120' => 'shi',
	'SHI44959' => 'shi',
	'SHI46406' => 'shi',
	'SHI48191' => 'shi',
	'SHI48192' => 'shi',
	'Solyc10g150111.1' => 'sly',
	'Solyc12g062340.2' => 'sly',
	'Sopen00g001750' => 'spe',
	'Sopen00g001820' => 'spe',
	'Sopen00g001830' => 'spe',
	'Sopen00g001890' => 'spe',
	'Sopen00g002240' => 'spe',
	'Sopen00g003950' => 'spe',
	'Sopen00g004130' => 'spe',
	'Sopen00g004810' => 'spe',
	'Sopen00g005120' => 'spe',
	'Sopen00g005190' => 'spe',
	'Sopen00g007000' => 'spe',
	'Sopen00g007210' => 'spe',
	'Sopen00g012840' => 'spe',
	'Sopen00g013060' => 'spe',
	'Sopen00g013610' => 'spe',
	'Sopen00g013630' => 'spe',
	'Sopen01g004610' => 'spe',
	'Sopen01g007660' => 'spe',
	'Sopen01g007750' => 'spe',
	'Sopen01g007760' => 'spe',
	'Sopen01g007770' => 'spe',
	'Sopen01g007860' => 'spe',
	'Sopen01g009130' => 'spe',
	'Sopen01g009820' => 'spe',
	'Sopen01g011240' => 'spe',
	'Sopen01g012740' => 'spe',
	'Sopen01g013840' => 'spe',
	'Sopen01g013850' => 'spe',
	'Sopen01g016140' => 'spe',
	'Sopen01g016150' => 'spe',
	'Sopen01g016830' => 'spe',
	'Sopen01g017260' => 'spe',
	'Sopen01g019000' => 'spe',
	'Sopen01g019690' => 'spe',
	'Sopen01g022160' => 'spe',
	'Sopen01g024000' => 'spe',
	'Sopen01g024670' => 'spe',
	'Sopen01g024770' => 'spe',
	'Sopen01g024900' => 'spe',
	'Sopen01g025130' => 'spe',
	'Sopen01g026370' => 'spe',
	'Sopen01g041640' => 'spe',
	'Sopen01g046930' => 'spe',
	'Sopen02g001360' => 'spe',
	'Sopen02g002010' => 'spe',
	'Sopen02g003600' => 'spe',
	'Sopen02g003730' => 'spe',
	'Sopen02g005430' => 'spe',
	'Sopen02g005510' => 'spe',
	'Sopen02g006840' => 'spe',
	'Sopen02g007390' => 'spe',
	'Sopen02g007420' => 'spe',
	'Sopen02g007540' => 'spe',
	'Sopen02g007920' => 'spe',
	'Sopen02g008960' => 'spe',
	'Sopen02g009450' => 'spe',
	'Sopen02g009460' => 'spe',
	'Sopen02g011320' => 'spe',
	'Sopen02g012680' => 'spe',
	'Sopen02g018090' => 'spe',
	'Sopen02g022140' => 'spe',
	'Sopen03g010330' => 'spe',
	'Sopen03g013130' => 'spe',
	'Sopen03g013180' => 'spe',
	'Sopen03g013230' => 'spe',
	'Sopen03g014110' => 'spe',
	'Sopen03g015260' => 'spe',
	'Sopen03g015790' => 'spe',
	'Sopen03g018360' => 'spe',
	'Sopen03g024470' => 'spe',
	'Sopen03g026800' => 'spe',
	'Sopen04g003180' => 'spe',
	'Sopen04g008260' => 'spe',
	'Sopen04g010320' => 'spe',
	'Sopen04g011020' => 'spe',
	'Sopen04g011200' => 'spe',
	'Sopen04g011280' => 'spe',
	'Sopen04g021910' => 'spe',
	'Sopen04g023870' => 'spe',
	'Sopen05g009880' => 'spe',
	'Sopen05g011580' => 'spe',
	'Sopen05g012230' => 'spe',
	'Sopen05g012500' => 'spe',
	'Sopen05g012560' => 'spe',
	'Sopen05g012570' => 'spe',
	'Sopen05g012760' => 'spe',
	'Sopen05g013710' => 'spe',
	'Sopen05g015050' => 'spe',
	'Sopen05g026090' => 'spe',
	'Sopen05g028020' => 'spe',
	'Sopen05g028610' => 'spe',
	'Sopen05g029300' => 'spe',
	'Sopen06g005520' => 'spe',
	'Sopen06g006750' => 'spe',
	'Sopen06g008160' => 'spe',
	'Sopen06g009120' => 'spe',
	'Sopen06g013550' => 'spe',
	'Sopen06g015340' => 'spe',
	'Sopen06g018330' => 'spe',
	'Sopen06g021630' => 'spe',
	'Sopen06g021650' => 'spe',
	'Sopen07g006730' => 'spe',
	'Sopen07g008690' => 'spe',
	'Sopen07g008700' => 'spe',
	'Sopen07g008720' => 'spe',
	'Sopen07g008870' => 'spe',
	'Sopen07g009400' => 'spe',
	'Sopen07g009410' => 'spe',
	'Sopen07g009470' => 'spe',
	'Sopen07g009540' => 'spe',
	'Sopen07g011060' => 'spe',
	'Sopen07g011110' => 'spe',
	'Sopen07g011820' => 'spe',
	'Sopen07g013260' => 'spe',
	'Sopen07g014740' => 'spe',
	'Sopen07g015160' => 'spe',
	'Sopen07g015230' => 'spe',
	'Sopen07g016240' => 'spe',
	'Sopen07g017200' => 'spe',
	'Sopen07g017810' => 'spe',
	'Sopen07g019030' => 'spe',
	'Sopen07g020430' => 'spe',
	'Sopen07g021010' => 'spe',
	'Sopen07g021340' => 'spe',
	'Sopen07g022950' => 'spe',
	'Sopen07g027860' => 'spe',
	'Sopen08g007820' => 'spe',
	'Sopen08g009330' => 'spe',
	'Sopen08g012310' => 'spe',
	'Sopen08g012560' => 'spe',
	'Sopen08g014040' => 'spe',
	'Sopen08g014650' => 'spe',
	'Sopen08g017020' => 'spe',
	'Sopen08g018300' => 'spe',
	'Sopen08g020530' => 'spe',
	'Sopen09g008590' => 'spe',
	'Sopen09g008780' => 'spe',
	'Sopen09g011540' => 'spe',
	'Sopen09g011920' => 'spe',
	'Sopen09g014170' => 'spe',
	'Sopen09g016520' => 'spe',
	'Sopen09g021030' => 'spe',
	'Sopen09g023110' => 'spe',
	'Sopen09g024750' => 'spe',
	'Sopen09g025230' => 'spe',
	'Sopen09g025600' => 'spe',
	'Sopen09g034660' => 'spe',
	'Sopen10g006700' => 'spe',
	'Sopen10g009130' => 'spe',
	'Sopen10g009140' => 'spe',
	'Sopen10g009560' => 'spe',
	'Sopen10g010340' => 'spe',
	'Sopen10g011040' => 'spe',
	'Sopen10g013650' => 'spe',
	'Sopen10g014130' => 'spe',
	'Sopen10g014140' => 'spe',
	'Sopen10g014760' => 'spe',
	'Sopen10g015080' => 'spe',
	'Sopen10g015830' => 'spe',
	'Sopen10g018240' => 'spe',
	'Sopen10g018300' => 'spe',
	'Sopen10g018350' => 'spe',
	'Sopen10g018460' => 'spe',
	'Sopen10g018670' => 'spe',
	'Sopen10g019040' => 'spe',
	'Sopen10g019330' => 'spe',
	'Sopen10g019340' => 'spe',
	'Sopen10g019360' => 'spe',
	'Sopen10g019370' => 'spe',
	'Sopen10g020620' => 'spe',
	'Sopen10g021550' => 'spe',
	'Sopen10g022160' => 'spe',
	'Sopen10g023540' => 'spe',
	'Sopen10g023570' => 'spe',
	'Sopen10g023580' => 'spe',
	'Sopen10g023600' => 'spe',
	'Sopen10g023620' => 'spe',
	'Sopen10g023650' => 'spe',
	'Sopen10g024800' => 'spe',
	'Sopen10g026170' => 'spe',
	'Sopen11g007790' => 'spe',
	'Sopen11g010170' => 'spe',
	'Sopen11g010580' => 'spe',
	'Sopen11g013420' => 'spe',
	'Sopen11g016330' => 'spe',
	'Sopen11g017010' => 'spe',
	'Sopen11g018110' => 'spe',
	'Sopen11g018960' => 'spe',
	'Sopen11g019000' => 'spe',
	'Sopen11g019970' => 'spe',
	'Sopen11g020340' => 'spe',
	'Sopen11g020970' => 'spe',
	'Sopen12g008510' => 'spe',
	'Sopen12g008910' => 'spe',
	'Sopen12g009010' => 'spe',
	'Sopen12g009120' => 'spe',
	'Sopen12g009340' => 'spe',
	'Sopen12g009580' => 'spe',
	'Sopen12g010190' => 'spe',
	'Sopen12g010320' => 'spe',
	'Sopen12g010370' => 'spe',
	'Sopen12g012140' => 'spe',
	'Sopen12g012700' => 'spe',
	'Sopen12g013490' => 'spe',
	'Sopen12g014290' => 'spe',
	'Sopen12g015060' => 'spe',
	'Sopen12g015610' => 'spe',
	'Sopen12g018380' => 'spe',
	'Sopen12g019150' => 'spe',
	'Sopen12g020560' => 'spe',
	'Sopen12g023320' => 'spe',
	'Sp3g24190' => 'spa',
	'Sp4g07270' => 'spa',
	'Sp4g07530' => 'spa',
	'Sp4g07670' => 'spa',
	'Sp6g09360' => 'spa',
	'Sp7g04180' => 'spa',
	'Sp7g04980' => 'spa',
	'Sp7g08200' => 'spa',
	'Sp7g09660' => 'spa',
	'SpUn0081_0010' => 'spa',
	'THA.LOC104803417' => 'tha',
	'THA.LOC104817059' => 'tha',
	'Thecc.01G188700' => 'tca',
	'Thecc.05G106700' => 'tca',
	'Thecc.06G068800' => 'tca',
	'Thecc.07G189100' => 'tca',
	'Thecc.09G172800' => 'tca',
	'Thhalv10023044m.g' => 'esa',
	'Thhalv10023881m.g' => 'esa',
	'Thhalv10024067m.g' => 'esa'
)
$gf_id = 'HOM05D000691'
$gf_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$gf_types_configuration = array(
	'HOMFAM' => array(
		'order' => '1',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	),
	'ORTHOFAM' => array(
		'order' => '2',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	)
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$allow_async_use = true
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D000691'
)
$data_identifier = 'HOM05D000691'
$data_type = 'gf_id'
$species_gene_counts = array(
	'amhyb' => (int) 18,
	'aly' => (int) 1,
	'atr' => (int) 21,
	'acertr' => (int) 1,
	'cqu' => (int) 90,
	'bol' => (int) 1,
	'can' => (int) 7,
	'cil' => (int) 3,
	'cla' => (int) 15,
	'col' => (int) 1,
	'cpa' => (int) 2,
	'csa' => (int) 7,
	'camsi' => (int) 10,
	'din' => (int) 1,
	'dzi' => (int) 2,
	'bvu' => (int) 18,
	'fve' => (int) 22,
	'gra' => (int) 1,
	'han' => (int) 7,
	'hma' => (int) 9,
	'sun' => (int) 16,
	'lonja' => (int) 46,
	'mes' => (int) 8,
	'mbi' => (int) 2,
	'cme' => (int) 6,
	'oeu' => (int) 110,
	'stu' => (int) 45,
	'ptr' => (int) 1,
	'rch' => (int) 1,
	'sci' => (int) 1,
	'sgi' => (int) 31,
	'sas' => (int) 1,
	'shi' => (int) 89,
	'sly' => (int) 2,
	'spe' => (int) 211,
	'spa' => (int) 10,
	'tha' => (int) 2,
	'tca' => (int) 5,
	'esa' => (int) 3
)
$gf_gene_species = 'esa'
$gf_gene_id = 'Thhalv10024067m.g'
$species_info = array(
	'species' => 'cqu',
	'common_name' => 'Chenopodium quinoa',
	'tax_id' => '63459',
	'version' => 'KAUST v1.0'
)
$local_species = 'cqu'
$disabled = ''
$selected = ''
$num_hits = (int) 0
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Analysis/custom_tree_creation.ctp, line 27
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933

Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]
Code Context
        $disabled    = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";

        $selected    = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";

        $num_hits    = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D000691',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '827',
		'num_species' => '39'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'gf_genes' => array(
		'Ah.01g012340' => 'amhyb',
		'Ah.01g013530' => 'amhyb',
		'Ah.03g143080' => 'amhyb',
		'Ah.06g186750' => 'amhyb',
		'Ah.06g186800' => 'amhyb',
		'Ah.07g200050' => 'amhyb',
		'Ah.08g209110' => 'amhyb',
		'Ah.09g229600' => 'amhyb',
		'Ah.09g229610' => 'amhyb',
		'Ah.10g026490' => 'amhyb',
		'Ah.12g065350' => 'amhyb',
		'Ah.13g069310' => 'amhyb',
		'Ah.14g080130' => 'amhyb',
		'Ah.14g081130' => 'amhyb',
		'Ah.14g081140' => 'amhyb',
		'Ah.16g109160' => 'amhyb',
		'Ah.16g109170' => 'amhyb',
		'Ah.16g109370' => 'amhyb',
		'AL3G47720' => 'aly',
		'ATR0012G060' => 'atr',
		'ATR0026G029' => 'atr',
		'ATR0193G043' => 'atr',
		'ATR0561G076' => 'atr',
		'ATR0561G181' => 'atr',
		'ATR0568G014' => 'atr',
		'ATR0568G114' => 'atr',
		'ATR0620G039' => 'atr',
		'ATR0629G125' => 'atr',
		'ATR0661G583' => 'atr',
		'ATR0686G019' => 'atr',
		'ATR0693G232' => 'atr',
		'ATR0697G104' => 'atr',
		'ATR0789G146' => 'atr',
		'ATR0794G066' => 'atr',
		'ATR1127G127' => 'atr',
		'ATR1131G040' => 'atr',
		'ATR1134G004' => 'atr',
		'ATR1134G095' => 'atr',
		'ATR1152G110' => 'atr',
		'ATR1153G065' => 'atr',
		'Atru.chr3.2296' => 'acertr',
		'AUR62000692' => 'cqu',
		'AUR62001473' => 'cqu',
		'AUR62001812' => 'cqu',
		'AUR62002706' => 'cqu',
		'AUR62003904' => 'cqu',
		'AUR62003905' => 'cqu',
		'AUR62004840' => 'cqu',
		'AUR62005160' => 'cqu',
		'AUR62005604' => 'cqu',
		'AUR62005891' => 'cqu',
		'AUR62007290' => 'cqu',
		'AUR62007502' => 'cqu',
		'AUR62007923' => 'cqu',
		'AUR62009972' => 'cqu',
		'AUR62010488' => 'cqu',
		'AUR62010643' => 'cqu',
		'AUR62012637' => 'cqu',
		'AUR62013492' => 'cqu',
		'AUR62014239' => 'cqu',
		'AUR62014878' => 'cqu',
		'AUR62015857' => 'cqu',
		'AUR62016224' => 'cqu',
		'AUR62017430' => 'cqu',
		'AUR62017467' => 'cqu',
		'AUR62018234' => 'cqu',
		'AUR62019060' => 'cqu',
		'AUR62019607' => 'cqu',
		'AUR62019661' => 'cqu',
		'AUR62022775' => 'cqu',
		'AUR62023603' => 'cqu',
		'AUR62024563' => 'cqu',
		'AUR62026199' => 'cqu',
		'AUR62026905' => 'cqu',
		'AUR62028639' => 'cqu',
		'AUR62029168' => 'cqu',
		'AUR62029551' => 'cqu',
		'AUR62029860' => 'cqu',
		'AUR62030164' => 'cqu',
		'AUR62031208' => 'cqu',
		'AUR62031287' => 'cqu',
		'AUR62031817' => 'cqu',
		'AUR62032126' => 'cqu',
		'AUR62032358' => 'cqu',
		'AUR62032884' => 'cqu',
		'AUR62032892' => 'cqu',
		'AUR62033082' => 'cqu',
		'AUR62033100' => 'cqu',
		'AUR62033255' => 'cqu',
		'AUR62033698' => 'cqu',
		'AUR62033757' => 'cqu',
		'AUR62034760' => 'cqu',
		'AUR62034860' => 'cqu',
		'AUR62035179' => 'cqu',
		'AUR62035881' => 'cqu',
		'AUR62036824' => 'cqu',
		'AUR62036876' => 'cqu',
		'AUR62037319' => 'cqu',
		'AUR62037362' => 'cqu',
		'AUR62037541' => 'cqu',
		'AUR62037853' => 'cqu',
		'AUR62038299' => 'cqu',
		'AUR62038563' => 'cqu',
		'AUR62038564' => 'cqu',
		'AUR62038594' => 'cqu',
		'AUR62038792' => 'cqu',
		'AUR62038947' => 'cqu',
		'AUR62039030' => 'cqu',
		'AUR62039231' => 'cqu',
		'AUR62039452' => 'cqu',
		'AUR62040334' => 'cqu',
		'AUR62040869' => 'cqu',
		'AUR62040870' => 'cqu',
		'AUR62040916' => 'cqu',
		'AUR62041199' => 'cqu',
		'AUR62041334' => 'cqu',
		'AUR62041608' => 'cqu',
		'AUR62041609' => 'cqu',
		'AUR62041833' => 'cqu',
		'AUR62041834' => 'cqu',
		'AUR62042054' => 'cqu',
		'AUR62042134' => 'cqu',
		'AUR62042236' => 'cqu',
		'AUR62042281' => 'cqu',
		'AUR62042593' => 'cqu',
		'AUR62042653' => 'cqu',
		'AUR62043025' => 'cqu',
		'AUR62043026' => 'cqu',
		'AUR62043063' => 'cqu',
		'AUR62043091' => 'cqu',
		'AUR62043320' => 'cqu',
		'BolC5t32558H' => 'bol',
		'CAN.G1036.12' => 'can',
		'CAN.G1432.23' => 'can',
		'CAN.G159.19' => 'can',
		'CAN.G4114.1' => 'can',
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		'Sopen00g013060' => 'spe',
		'Sopen00g013610' => 'spe',
		'Sopen00g013630' => 'spe',
		'Sopen01g004610' => 'spe',
		'Sopen01g007660' => 'spe',
		'Sopen01g007750' => 'spe',
		'Sopen01g007760' => 'spe',
		'Sopen01g007770' => 'spe',
		'Sopen01g007860' => 'spe',
		'Sopen01g009130' => 'spe',
		'Sopen01g009820' => 'spe',
		'Sopen01g011240' => 'spe',
		'Sopen01g012740' => 'spe',
		'Sopen01g013840' => 'spe',
		'Sopen01g013850' => 'spe',
		'Sopen01g016140' => 'spe',
		'Sopen01g016150' => 'spe',
		'Sopen01g016830' => 'spe',
		'Sopen01g017260' => 'spe',
		'Sopen01g019000' => 'spe',
		'Sopen01g019690' => 'spe',
		'Sopen01g022160' => 'spe',
		'Sopen01g024000' => 'spe',
		'Sopen01g024670' => 'spe',
		'Sopen01g024770' => 'spe',
		'Sopen01g024900' => 'spe',
		'Sopen01g025130' => 'spe',
		'Sopen01g026370' => 'spe',
		'Sopen01g041640' => 'spe',
		'Sopen01g046930' => 'spe',
		'Sopen02g001360' => 'spe',
		'Sopen02g002010' => 'spe',
		'Sopen02g003600' => 'spe',
		'Sopen02g003730' => 'spe',
		'Sopen02g005430' => 'spe',
		'Sopen02g005510' => 'spe',
		'Sopen02g006840' => 'spe',
		'Sopen02g007390' => 'spe',
		'Sopen02g007420' => 'spe',
		'Sopen02g007540' => 'spe',
		'Sopen02g007920' => 'spe',
		'Sopen02g008960' => 'spe',
		'Sopen02g009450' => 'spe',
		'Sopen02g009460' => 'spe',
		'Sopen02g011320' => 'spe',
		'Sopen02g012680' => 'spe',
		'Sopen02g018090' => 'spe',
		'Sopen02g022140' => 'spe',
		'Sopen03g010330' => 'spe',
		'Sopen03g013130' => 'spe',
		'Sopen03g013180' => 'spe',
		'Sopen03g013230' => 'spe',
		'Sopen03g014110' => 'spe',
		'Sopen03g015260' => 'spe',
		'Sopen03g015790' => 'spe',
		'Sopen03g018360' => 'spe',
		'Sopen03g024470' => 'spe',
		'Sopen03g026800' => 'spe',
		'Sopen04g003180' => 'spe',
		'Sopen04g008260' => 'spe',
		'Sopen04g010320' => 'spe',
		'Sopen04g011020' => 'spe',
		'Sopen04g011200' => 'spe',
		'Sopen04g011280' => 'spe',
		'Sopen04g021910' => 'spe',
		'Sopen04g023870' => 'spe',
		'Sopen05g009880' => 'spe',
		'Sopen05g011580' => 'spe',
		'Sopen05g012230' => 'spe',
		'Sopen05g012500' => 'spe',
		'Sopen05g012560' => 'spe',
		'Sopen05g012570' => 'spe',
		'Sopen05g012760' => 'spe',
		'Sopen05g013710' => 'spe',
		'Sopen05g015050' => 'spe',
		'Sopen05g026090' => 'spe',
		'Sopen05g028020' => 'spe',
		'Sopen05g028610' => 'spe',
		'Sopen05g029300' => 'spe',
		'Sopen06g005520' => 'spe',
		'Sopen06g006750' => 'spe',
		'Sopen06g008160' => 'spe',
		'Sopen06g009120' => 'spe',
		'Sopen06g013550' => 'spe',
		'Sopen06g015340' => 'spe',
		'Sopen06g018330' => 'spe',
		'Sopen06g021630' => 'spe',
		'Sopen06g021650' => 'spe',
		'Sopen07g006730' => 'spe',
		'Sopen07g008690' => 'spe',
		'Sopen07g008700' => 'spe',
		'Sopen07g008720' => 'spe',
		'Sopen07g008870' => 'spe',
		'Sopen07g009400' => 'spe',
		'Sopen07g009410' => 'spe',
		'Sopen07g009470' => 'spe',
		'Sopen07g009540' => 'spe',
		'Sopen07g011060' => 'spe',
		'Sopen07g011110' => 'spe',
		'Sopen07g011820' => 'spe',
		'Sopen07g013260' => 'spe',
		'Sopen07g014740' => 'spe',
		'Sopen07g015160' => 'spe',
		'Sopen07g015230' => 'spe',
		'Sopen07g016240' => 'spe',
		'Sopen07g017200' => 'spe',
		'Sopen07g017810' => 'spe',
		'Sopen07g019030' => 'spe',
		'Sopen07g020430' => 'spe',
		'Sopen07g021010' => 'spe',
		'Sopen07g021340' => 'spe',
		'Sopen07g022950' => 'spe',
		'Sopen07g027860' => 'spe',
		'Sopen08g007820' => 'spe',
		'Sopen08g009330' => 'spe',
		'Sopen08g012310' => 'spe',
		'Sopen08g012560' => 'spe',
		'Sopen08g014040' => 'spe',
		'Sopen08g014650' => 'spe',
		'Sopen08g017020' => 'spe',
		'Sopen08g018300' => 'spe',
		'Sopen08g020530' => 'spe',
		'Sopen09g008590' => 'spe',
		'Sopen09g008780' => 'spe',
		'Sopen09g011540' => 'spe',
		'Sopen09g011920' => 'spe',
		'Sopen09g014170' => 'spe',
		'Sopen09g016520' => 'spe',
		'Sopen09g021030' => 'spe',
		'Sopen09g023110' => 'spe',
		'Sopen09g024750' => 'spe',
		'Sopen09g025230' => 'spe',
		'Sopen09g025600' => 'spe',
		'Sopen09g034660' => 'spe',
		'Sopen10g006700' => 'spe',
		'Sopen10g009130' => 'spe',
		'Sopen10g009140' => 'spe',
		'Sopen10g009560' => 'spe',
		'Sopen10g010340' => 'spe',
		'Sopen10g011040' => 'spe',
		'Sopen10g013650' => 'spe',
		'Sopen10g014130' => 'spe',
		'Sopen10g014140' => 'spe',
		'Sopen10g014760' => 'spe',
		'Sopen10g015080' => 'spe',
		'Sopen10g015830' => 'spe',
		'Sopen10g018240' => 'spe',
		'Sopen10g018300' => 'spe',
		'Sopen10g018350' => 'spe',
		'Sopen10g018460' => 'spe',
		'Sopen10g018670' => 'spe',
		'Sopen10g019040' => 'spe',
		'Sopen10g019330' => 'spe',
		'Sopen10g019340' => 'spe',
		'Sopen10g019360' => 'spe',
		'Sopen10g019370' => 'spe',
		'Sopen10g020620' => 'spe',
		'Sopen10g021550' => 'spe',
		'Sopen10g022160' => 'spe',
		'Sopen10g023540' => 'spe',
		'Sopen10g023570' => 'spe',
		'Sopen10g023580' => 'spe',
		'Sopen10g023600' => 'spe',
		'Sopen10g023620' => 'spe',
		'Sopen10g023650' => 'spe',
		'Sopen10g024800' => 'spe',
		'Sopen10g026170' => 'spe',
		'Sopen11g007790' => 'spe',
		'Sopen11g010170' => 'spe',
		'Sopen11g010580' => 'spe',
		'Sopen11g013420' => 'spe',
		'Sopen11g016330' => 'spe',
		'Sopen11g017010' => 'spe',
		'Sopen11g018110' => 'spe',
		'Sopen11g018960' => 'spe',
		'Sopen11g019000' => 'spe',
		'Sopen11g019970' => 'spe',
		'Sopen11g020340' => 'spe',
		'Sopen11g020970' => 'spe',
		'Sopen12g008510' => 'spe',
		'Sopen12g008910' => 'spe',
		'Sopen12g009010' => 'spe',
		'Sopen12g009120' => 'spe',
		'Sopen12g009340' => 'spe',
		'Sopen12g009580' => 'spe',
		'Sopen12g010190' => 'spe',
		'Sopen12g010320' => 'spe',
		'Sopen12g010370' => 'spe',
		'Sopen12g012140' => 'spe',
		'Sopen12g012700' => 'spe',
		'Sopen12g013490' => 'spe',
		'Sopen12g014290' => 'spe',
		'Sopen12g015060' => 'spe',
		'Sopen12g015610' => 'spe',
		'Sopen12g018380' => 'spe',
		'Sopen12g019150' => 'spe',
		'Sopen12g020560' => 'spe',
		'Sopen12g023320' => 'spe',
		'Sp3g24190' => 'spa',
		'Sp4g07270' => 'spa',
		'Sp4g07530' => 'spa',
		'Sp4g07670' => 'spa',
		'Sp6g09360' => 'spa',
		'Sp7g04180' => 'spa',
		'Sp7g04980' => 'spa',
		'Sp7g08200' => 'spa',
		'Sp7g09660' => 'spa',
		'SpUn0081_0010' => 'spa',
		'THA.LOC104803417' => 'tha',
		'THA.LOC104817059' => 'tha',
		'Thecc.01G188700' => 'tca',
		'Thecc.05G106700' => 'tca',
		'Thecc.06G068800' => 'tca',
		'Thecc.07G189100' => 'tca',
		'Thecc.09G172800' => 'tca',
		'Thhalv10023044m.g' => 'esa',
		'Thhalv10023881m.g' => 'esa',
		'Thhalv10024067m.g' => 'esa'
	),
	'gf_id' => 'HOM05D000691',
	'gf_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'gf_types_configuration' => array(
		'HOMFAM' => array(
			'order' => '1',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		),
		'ORTHOFAM' => array(
			'order' => '2',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		)
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'allow_async_use' => true,
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D000691'
	),
	'data_identifier' => 'HOM05D000691',
	'data_type' => 'gf_id'
)
$sidebar_info = array(
	'gf_id' => 'HOM05D000691',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '827',
	'num_species' => '39'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$gf_genes = array(
	'Ah.01g012340' => 'amhyb',
	'Ah.01g013530' => 'amhyb',
	'Ah.03g143080' => 'amhyb',
	'Ah.06g186750' => 'amhyb',
	'Ah.06g186800' => 'amhyb',
	'Ah.07g200050' => 'amhyb',
	'Ah.08g209110' => 'amhyb',
	'Ah.09g229600' => 'amhyb',
	'Ah.09g229610' => 'amhyb',
	'Ah.10g026490' => 'amhyb',
	'Ah.12g065350' => 'amhyb',
	'Ah.13g069310' => 'amhyb',
	'Ah.14g080130' => 'amhyb',
	'Ah.14g081130' => 'amhyb',
	'Ah.14g081140' => 'amhyb',
	'Ah.16g109160' => 'amhyb',
	'Ah.16g109170' => 'amhyb',
	'Ah.16g109370' => 'amhyb',
	'AL3G47720' => 'aly',
	'ATR0012G060' => 'atr',
	'ATR0026G029' => 'atr',
	'ATR0193G043' => 'atr',
	'ATR0561G076' => 'atr',
	'ATR0561G181' => 'atr',
	'ATR0568G014' => 'atr',
	'ATR0568G114' => 'atr',
	'ATR0620G039' => 'atr',
	'ATR0629G125' => 'atr',
	'ATR0661G583' => 'atr',
	'ATR0686G019' => 'atr',
	'ATR0693G232' => 'atr',
	'ATR0697G104' => 'atr',
	'ATR0789G146' => 'atr',
	'ATR0794G066' => 'atr',
	'ATR1127G127' => 'atr',
	'ATR1131G040' => 'atr',
	'ATR1134G004' => 'atr',
	'ATR1134G095' => 'atr',
	'ATR1152G110' => 'atr',
	'ATR1153G065' => 'atr',
	'Atru.chr3.2296' => 'acertr',
	'AUR62000692' => 'cqu',
	'AUR62001473' => 'cqu',
	'AUR62001812' => 'cqu',
	'AUR62002706' => 'cqu',
	'AUR62003904' => 'cqu',
	'AUR62003905' => 'cqu',
	'AUR62004840' => 'cqu',
	'AUR62005160' => 'cqu',
	'AUR62005604' => 'cqu',
	'AUR62005891' => 'cqu',
	'AUR62007290' => 'cqu',
	'AUR62007502' => 'cqu',
	'AUR62007923' => 'cqu',
	'AUR62009972' => 'cqu',
	'AUR62010488' => 'cqu',
	'AUR62010643' => 'cqu',
	'AUR62012637' => 'cqu',
	'AUR62013492' => 'cqu',
	'AUR62014239' => 'cqu',
	'AUR62014878' => 'cqu',
	'AUR62015857' => 'cqu',
	'AUR62016224' => 'cqu',
	'AUR62017430' => 'cqu',
	'AUR62017467' => 'cqu',
	'AUR62018234' => 'cqu',
	'AUR62019060' => 'cqu',
	'AUR62019607' => 'cqu',
	'AUR62019661' => 'cqu',
	'AUR62022775' => 'cqu',
	'AUR62023603' => 'cqu',
	'AUR62024563' => 'cqu',
	'AUR62026199' => 'cqu',
	'AUR62026905' => 'cqu',
	'AUR62028639' => 'cqu',
	'AUR62029168' => 'cqu',
	'AUR62029551' => 'cqu',
	'AUR62029860' => 'cqu',
	'AUR62030164' => 'cqu',
	'AUR62031208' => 'cqu',
	'AUR62031287' => 'cqu',
	'AUR62031817' => 'cqu',
	'AUR62032126' => 'cqu',
	'AUR62032358' => 'cqu',
	'AUR62032884' => 'cqu',
	'AUR62032892' => 'cqu',
	'AUR62033082' => 'cqu',
	'AUR62033100' => 'cqu',
	'AUR62033255' => 'cqu',
	'AUR62033698' => 'cqu',
	'AUR62033757' => 'cqu',
	'AUR62034760' => 'cqu',
	'AUR62034860' => 'cqu',
	'AUR62035179' => 'cqu',
	'AUR62035881' => 'cqu',
	'AUR62036824' => 'cqu',
	'AUR62036876' => 'cqu',
	'AUR62037319' => 'cqu',
	'AUR62037362' => 'cqu',
	'AUR62037541' => 'cqu',
	'AUR62037853' => 'cqu',
	'AUR62038299' => 'cqu',
	'AUR62038563' => 'cqu',
	'AUR62038564' => 'cqu',
	'AUR62038594' => 'cqu',
	'AUR62038792' => 'cqu',
	'AUR62038947' => 'cqu',
	'AUR62039030' => 'cqu',
	'AUR62039231' => 'cqu',
	'AUR62039452' => 'cqu',
	'AUR62040334' => 'cqu',
	'AUR62040869' => 'cqu',
	'AUR62040870' => 'cqu',
	'AUR62040916' => 'cqu',
	'AUR62041199' => 'cqu',
	'AUR62041334' => 'cqu',
	'AUR62041608' => 'cqu',
	'AUR62041609' => 'cqu',
	'AUR62041833' => 'cqu',
	'AUR62041834' => 'cqu',
	'AUR62042054' => 'cqu',
	'AUR62042134' => 'cqu',
	'AUR62042236' => 'cqu',
	'AUR62042281' => 'cqu',
	'AUR62042593' => 'cqu',
	'AUR62042653' => 'cqu',
	'AUR62043025' => 'cqu',
	'AUR62043026' => 'cqu',
	'AUR62043063' => 'cqu',
	'AUR62043091' => 'cqu',
	'AUR62043320' => 'cqu',
	'BolC5t32558H' => 'bol',
	'CAN.G1036.12' => 'can',
	'CAN.G1432.23' => 'can',
	'CAN.G159.19' => 'can',
	'CAN.G4114.1' => 'can',
	'CAN.G492.85' => 'can',
	'CAN.G500.95' => 'can',
	'CAN.G93.31' => 'can',
	'CiPaw.04G054900' => 'cil',
	'CiPaw.05G045400' => 'cil',
	'CiPaw.15G094100' => 'cil',
	'ClCG00G000700' => 'cla',
	'ClCG00G000780' => 'cla',
	'ClCG01G012280' => 'cla',
	'ClCG02G006140' => 'cla',
	'ClCG02G009810' => 'cla',
	'ClCG03G010170' => 'cla',
	'ClCG03G010260' => 'cla',
	'ClCG04G000770' => 'cla',
	'ClCG05G013980' => 'cla',
	'ClCG06G009110' => 'cla',
	'ClCG06G009120' => 'cla',
	'ClCG08G002190' => 'cla',
	'ClCG09G013830' => 'cla',
	'ClCG10G006760' => 'cla',
	'ClCG11G007310' => 'cla',
	'COL.COLO4_16141' => 'col',
	'Cpa.g.sc202.2' => 'cpa',
	'Cpa.g.sc76.18' => 'cpa',
	'CsaV3_1G031080' => 'csa',
	'CsaV3_4G011870' => 'csa',
	'CsaV3_4G014860' => 'csa',
	'CsaV3_4G021860' => 'csa',
	'CsaV3_6G009880' => 'csa',
	'CsaV3_7G021240' => 'csa',
	'CsaV3_UNG240600' => 'csa',
	'CSS0003516' => 'camsi',
	'CSS0013023' => 'camsi',
	'CSS0017680' => 'camsi',
	'CSS0018551' => 'camsi',
	'CSS0026792' => 'camsi',
	'CSS0028271' => 'camsi',
	'CSS0033603' => 'camsi',
	'CSS0040789' => 'camsi',
	'CSS0045068' => 'camsi',
	'CSS0045803' => 'camsi',
	'Dinv10528' => 'din',
	'Duzib116G0875' => 'dzi',
	'Duzib128G0055' => 'dzi',
	'EL10Ac1g02377' => 'bvu',
	'EL10Ac1g02378' => 'bvu',
	'EL10Ac2g03486' => 'bvu',
	'EL10Ac2g03487' => 'bvu',
	'EL10Ac3g05722' => 'bvu',
	'EL10Ac3g06186' => 'bvu',
	'EL10Ac5g11258' => 'bvu',
	'EL10Ac6g13831' => 'bvu',
	'EL10Ac6g14162' => 'bvu',
	'EL10Ac6g14316' => 'bvu',
	'EL10Ac6g14317' => 'bvu',
	'EL10Ac6g14588' => 'bvu',
	'EL10Ac7g16302' => 'bvu',
	'EL10Ac7g16543' => 'bvu',
	'EL10Ac8g18762' => 'bvu',
	'EL10Ac9g20847' => 'bvu',
	'EL10As7g23731' => 'bvu',
	'EL10As7g23732' => 'bvu',
	'FvH4_1g23713' => 'fve',
	'FvH4_2g00261' => 'fve',
	'FvH4_2g00262' => 'fve',
	'FvH4_2g15681' => 'fve',
	'FvH4_2g17851' => 'fve',
	'FvH4_3g10531' => 'fve',
	'FvH4_3g33536' => 'fve',
	'FvH4_4g03471' => 'fve',
	'FvH4_4g19351' => 'fve',
	'FvH4_4g34281' => 'fve',
	'FvH4_5g03811' => 'fve',
	'FvH4_5g03812' => 'fve',
	'FvH4_5g11822' => 'fve',
	'FvH4_5g31701' => 'fve',
	'FvH4_6g12161' => 'fve',
	'FvH4_6g15222' => 'fve',
	'FvH4_6g15223' => 'fve',
	'FvH4_6g19301' => 'fve',
	'FvH4_6g33011' => 'fve',
	'FvH4_6g50161' => 'fve',
	'FvH4_7g04123' => 'fve',
	'FvH4_c7g00010' => 'fve',
	'Gorai.012G165300' => 'gra',
	'HanXRQChr00c0452g0574871' => 'han',
	'HanXRQChr01g0029471' => 'han',
	'HanXRQChr05g0133501' => 'han',
	'HanXRQChr10g0280141' => 'han',
	'HanXRQChr10g0280631' => 'han',
	'HanXRQChr13g0409991' => 'han',
	'HanXRQChr15g0468361' => 'han',
	'Hma1.2p1_0021F.1_g014270' => 'hma',
	'Hma1.2p1_0026F.1_g016730' => 'hma',
	'Hma1.2p1_0177F.1_g077930' => 'hma',
	'Hma1.2p1_0370F.1_g137540' => 'hma',
	'Hma1.2p1_0637F.1_g193600' => 'hma',
	'Hma1.2p1_1045F.1_g251360' => 'hma',
	'Hma1.2p1_1168F.1_g263120' => 'hma',
	'Hma1.2p1_1640F.1_g295040' => 'hma',
	'Hma1.2p1_2467F.1_g322660' => 'hma',
	'Hund01785' => 'sun',
	'Hund04739' => 'sun',
	'Hund07717' => 'sun',
	'Hund08060' => 'sun',
	'Hund08734' => 'sun',
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	'Sopen10g019040' => 'spe',
	'Sopen10g019330' => 'spe',
	'Sopen10g019340' => 'spe',
	'Sopen10g019360' => 'spe',
	'Sopen10g019370' => 'spe',
	'Sopen10g020620' => 'spe',
	'Sopen10g021550' => 'spe',
	'Sopen10g022160' => 'spe',
	'Sopen10g023540' => 'spe',
	'Sopen10g023570' => 'spe',
	'Sopen10g023580' => 'spe',
	'Sopen10g023600' => 'spe',
	'Sopen10g023620' => 'spe',
	'Sopen10g023650' => 'spe',
	'Sopen10g024800' => 'spe',
	'Sopen10g026170' => 'spe',
	'Sopen11g007790' => 'spe',
	'Sopen11g010170' => 'spe',
	'Sopen11g010580' => 'spe',
	'Sopen11g013420' => 'spe',
	'Sopen11g016330' => 'spe',
	'Sopen11g017010' => 'spe',
	'Sopen11g018110' => 'spe',
	'Sopen11g018960' => 'spe',
	'Sopen11g019000' => 'spe',
	'Sopen11g019970' => 'spe',
	'Sopen11g020340' => 'spe',
	'Sopen11g020970' => 'spe',
	'Sopen12g008510' => 'spe',
	'Sopen12g008910' => 'spe',
	'Sopen12g009010' => 'spe',
	'Sopen12g009120' => 'spe',
	'Sopen12g009340' => 'spe',
	'Sopen12g009580' => 'spe',
	'Sopen12g010190' => 'spe',
	'Sopen12g010320' => 'spe',
	'Sopen12g010370' => 'spe',
	'Sopen12g012140' => 'spe',
	'Sopen12g012700' => 'spe',
	'Sopen12g013490' => 'spe',
	'Sopen12g014290' => 'spe',
	'Sopen12g015060' => 'spe',
	'Sopen12g015610' => 'spe',
	'Sopen12g018380' => 'spe',
	'Sopen12g019150' => 'spe',
	'Sopen12g020560' => 'spe',
	'Sopen12g023320' => 'spe',
	'Sp3g24190' => 'spa',
	'Sp4g07270' => 'spa',
	'Sp4g07530' => 'spa',
	'Sp4g07670' => 'spa',
	'Sp6g09360' => 'spa',
	'Sp7g04180' => 'spa',
	'Sp7g04980' => 'spa',
	'Sp7g08200' => 'spa',
	'Sp7g09660' => 'spa',
	'SpUn0081_0010' => 'spa',
	'THA.LOC104803417' => 'tha',
	'THA.LOC104817059' => 'tha',
	'Thecc.01G188700' => 'tca',
	'Thecc.05G106700' => 'tca',
	'Thecc.06G068800' => 'tca',
	'Thecc.07G189100' => 'tca',
	'Thecc.09G172800' => 'tca',
	'Thhalv10023044m.g' => 'esa',
	'Thhalv10023881m.g' => 'esa',
	'Thhalv10024067m.g' => 'esa'
)
$gf_id = 'HOM05D000691'
$gf_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$gf_types_configuration = array(
	'HOMFAM' => array(
		'order' => '1',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	),
	'ORTHOFAM' => array(
		'order' => '2',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	)
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$allow_async_use = true
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D000691'
)
$data_identifier = 'HOM05D000691'
$data_type = 'gf_id'
$species_gene_counts = array(
	'amhyb' => (int) 18,
	'aly' => (int) 1,
	'atr' => (int) 21,
	'acertr' => (int) 1,
	'cqu' => (int) 90,
	'bol' => (int) 1,
	'can' => (int) 7,
	'cil' => (int) 3,
	'cla' => (int) 15,
	'col' => (int) 1,
	'cpa' => (int) 2,
	'csa' => (int) 7,
	'camsi' => (int) 10,
	'din' => (int) 1,
	'dzi' => (int) 2,
	'bvu' => (int) 18,
	'fve' => (int) 22,
	'gra' => (int) 1,
	'han' => (int) 7,
	'hma' => (int) 9,
	'sun' => (int) 16,
	'lonja' => (int) 46,
	'mes' => (int) 8,
	'mbi' => (int) 2,
	'cme' => (int) 6,
	'oeu' => (int) 110,
	'stu' => (int) 45,
	'ptr' => (int) 1,
	'rch' => (int) 1,
	'sci' => (int) 1,
	'sgi' => (int) 31,
	'sas' => (int) 1,
	'shi' => (int) 89,
	'sly' => (int) 2,
	'spe' => (int) 211,
	'spa' => (int) 10,
	'tha' => (int) 2,
	'tca' => (int) 5,
	'esa' => (int) 3
)
$gf_gene_species = 'esa'
$gf_gene_id = 'Thhalv10024067m.g'
$species_info = array(
	'species' => 'cla',
	'common_name' => 'Citrullus lanatus',
	'tax_id' => '3654',
	'version' => 'WCG v2.0'
)
$local_species = 'cla'
$disabled = ''
$selected = ''
$num_hits = (int) 0
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Analysis/custom_tree_creation.ctp, line 27
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933

Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]
Code Context
        $disabled    = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";

        $selected    = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";

        $num_hits    = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D000691',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '827',
		'num_species' => '39'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'gf_genes' => array(
		'Ah.01g012340' => 'amhyb',
		'Ah.01g013530' => 'amhyb',
		'Ah.03g143080' => 'amhyb',
		'Ah.06g186750' => 'amhyb',
		'Ah.06g186800' => 'amhyb',
		'Ah.07g200050' => 'amhyb',
		'Ah.08g209110' => 'amhyb',
		'Ah.09g229600' => 'amhyb',
		'Ah.09g229610' => 'amhyb',
		'Ah.10g026490' => 'amhyb',
		'Ah.12g065350' => 'amhyb',
		'Ah.13g069310' => 'amhyb',
		'Ah.14g080130' => 'amhyb',
		'Ah.14g081130' => 'amhyb',
		'Ah.14g081140' => 'amhyb',
		'Ah.16g109160' => 'amhyb',
		'Ah.16g109170' => 'amhyb',
		'Ah.16g109370' => 'amhyb',
		'AL3G47720' => 'aly',
		'ATR0012G060' => 'atr',
		'ATR0026G029' => 'atr',
		'ATR0193G043' => 'atr',
		'ATR0561G076' => 'atr',
		'ATR0561G181' => 'atr',
		'ATR0568G014' => 'atr',
		'ATR0568G114' => 'atr',
		'ATR0620G039' => 'atr',
		'ATR0629G125' => 'atr',
		'ATR0661G583' => 'atr',
		'ATR0686G019' => 'atr',
		'ATR0693G232' => 'atr',
		'ATR0697G104' => 'atr',
		'ATR0789G146' => 'atr',
		'ATR0794G066' => 'atr',
		'ATR1127G127' => 'atr',
		'ATR1131G040' => 'atr',
		'ATR1134G004' => 'atr',
		'ATR1134G095' => 'atr',
		'ATR1152G110' => 'atr',
		'ATR1153G065' => 'atr',
		'Atru.chr3.2296' => 'acertr',
		'AUR62000692' => 'cqu',
		'AUR62001473' => 'cqu',
		'AUR62001812' => 'cqu',
		'AUR62002706' => 'cqu',
		'AUR62003904' => 'cqu',
		'AUR62003905' => 'cqu',
		'AUR62004840' => 'cqu',
		'AUR62005160' => 'cqu',
		'AUR62005604' => 'cqu',
		'AUR62005891' => 'cqu',
		'AUR62007290' => 'cqu',
		'AUR62007502' => 'cqu',
		'AUR62007923' => 'cqu',
		'AUR62009972' => 'cqu',
		'AUR62010488' => 'cqu',
		'AUR62010643' => 'cqu',
		'AUR62012637' => 'cqu',
		'AUR62013492' => 'cqu',
		'AUR62014239' => 'cqu',
		'AUR62014878' => 'cqu',
		'AUR62015857' => 'cqu',
		'AUR62016224' => 'cqu',
		'AUR62017430' => 'cqu',
		'AUR62017467' => 'cqu',
		'AUR62018234' => 'cqu',
		'AUR62019060' => 'cqu',
		'AUR62019607' => 'cqu',
		'AUR62019661' => 'cqu',
		'AUR62022775' => 'cqu',
		'AUR62023603' => 'cqu',
		'AUR62024563' => 'cqu',
		'AUR62026199' => 'cqu',
		'AUR62026905' => 'cqu',
		'AUR62028639' => 'cqu',
		'AUR62029168' => 'cqu',
		'AUR62029551' => 'cqu',
		'AUR62029860' => 'cqu',
		'AUR62030164' => 'cqu',
		'AUR62031208' => 'cqu',
		'AUR62031287' => 'cqu',
		'AUR62031817' => 'cqu',
		'AUR62032126' => 'cqu',
		'AUR62032358' => 'cqu',
		'AUR62032884' => 'cqu',
		'AUR62032892' => 'cqu',
		'AUR62033082' => 'cqu',
		'AUR62033100' => 'cqu',
		'AUR62033255' => 'cqu',
		'AUR62033698' => 'cqu',
		'AUR62033757' => 'cqu',
		'AUR62034760' => 'cqu',
		'AUR62034860' => 'cqu',
		'AUR62035179' => 'cqu',
		'AUR62035881' => 'cqu',
		'AUR62036824' => 'cqu',
		'AUR62036876' => 'cqu',
		'AUR62037319' => 'cqu',
		'AUR62037362' => 'cqu',
		'AUR62037541' => 'cqu',
		'AUR62037853' => 'cqu',
		'AUR62038299' => 'cqu',
		'AUR62038563' => 'cqu',
		'AUR62038564' => 'cqu',
		'AUR62038594' => 'cqu',
		'AUR62038792' => 'cqu',
		'AUR62038947' => 'cqu',
		'AUR62039030' => 'cqu',
		'AUR62039231' => 'cqu',
		'AUR62039452' => 'cqu',
		'AUR62040334' => 'cqu',
		'AUR62040869' => 'cqu',
		'AUR62040870' => 'cqu',
		'AUR62040916' => 'cqu',
		'AUR62041199' => 'cqu',
		'AUR62041334' => 'cqu',
		'AUR62041608' => 'cqu',
		'AUR62041609' => 'cqu',
		'AUR62041833' => 'cqu',
		'AUR62041834' => 'cqu',
		'AUR62042054' => 'cqu',
		'AUR62042134' => 'cqu',
		'AUR62042236' => 'cqu',
		'AUR62042281' => 'cqu',
		'AUR62042593' => 'cqu',
		'AUR62042653' => 'cqu',
		'AUR62043025' => 'cqu',
		'AUR62043026' => 'cqu',
		'AUR62043063' => 'cqu',
		'AUR62043091' => 'cqu',
		'AUR62043320' => 'cqu',
		'BolC5t32558H' => 'bol',
		'CAN.G1036.12' => 'can',
		'CAN.G1432.23' => 'can',
		'CAN.G159.19' => 'can',
		'CAN.G4114.1' => 'can',
		'CAN.G492.85' => 'can',
		'CAN.G500.95' => 'can',
		'CAN.G93.31' => 'can',
		'CiPaw.04G054900' => 'cil',
		'CiPaw.05G045400' => 'cil',
		'CiPaw.15G094100' => 'cil',
		'ClCG00G000700' => 'cla',
		'ClCG00G000780' => 'cla',
		'ClCG01G012280' => 'cla',
		'ClCG02G006140' => 'cla',
		'ClCG02G009810' => 'cla',
		'ClCG03G010170' => 'cla',
		'ClCG03G010260' => 'cla',
		'ClCG04G000770' => 'cla',
		'ClCG05G013980' => 'cla',
		'ClCG06G009110' => 'cla',
		'ClCG06G009120' => 'cla',
		'ClCG08G002190' => 'cla',
		'ClCG09G013830' => 'cla',
		'ClCG10G006760' => 'cla',
		'ClCG11G007310' => 'cla',
		'COL.COLO4_16141' => 'col',
		'Cpa.g.sc202.2' => 'cpa',
		'Cpa.g.sc76.18' => 'cpa',
		'CsaV3_1G031080' => 'csa',
		'CsaV3_4G011870' => 'csa',
		'CsaV3_4G014860' => 'csa',
		'CsaV3_4G021860' => 'csa',
		'CsaV3_6G009880' => 'csa',
		'CsaV3_7G021240' => 'csa',
		'CsaV3_UNG240600' => 'csa',
		'CSS0003516' => 'camsi',
		'CSS0013023' => 'camsi',
		'CSS0017680' => 'camsi',
		'CSS0018551' => 'camsi',
		'CSS0026792' => 'camsi',
		'CSS0028271' => 'camsi',
		'CSS0033603' => 'camsi',
		'CSS0040789' => 'camsi',
		'CSS0045068' => 'camsi',
		'CSS0045803' => 'camsi',
		'Dinv10528' => 'din',
		'Duzib116G0875' => 'dzi',
		'Duzib128G0055' => 'dzi',
		'EL10Ac1g02377' => 'bvu',
		'EL10Ac1g02378' => 'bvu',
		'EL10Ac2g03486' => 'bvu',
		'EL10Ac2g03487' => 'bvu',
		'EL10Ac3g05722' => 'bvu',
		'EL10Ac3g06186' => 'bvu',
		'EL10Ac5g11258' => 'bvu',
		'EL10Ac6g13831' => 'bvu',
		'EL10Ac6g14162' => 'bvu',
		'EL10Ac6g14316' => 'bvu',
		'EL10Ac6g14317' => 'bvu',
		'EL10Ac6g14588' => 'bvu',
		'EL10Ac7g16302' => 'bvu',
		'EL10Ac7g16543' => 'bvu',
		'EL10Ac8g18762' => 'bvu',
		'EL10Ac9g20847' => 'bvu',
		'EL10As7g23731' => 'bvu',
		'EL10As7g23732' => 'bvu',
		'FvH4_1g23713' => 'fve',
		'FvH4_2g00261' => 'fve',
		'FvH4_2g00262' => 'fve',
		'FvH4_2g15681' => 'fve',
		'FvH4_2g17851' => 'fve',
		'FvH4_3g10531' => 'fve',
		'FvH4_3g33536' => 'fve',
		'FvH4_4g03471' => 'fve',
		'FvH4_4g19351' => 'fve',
		'FvH4_4g34281' => 'fve',
		'FvH4_5g03811' => 'fve',
		'FvH4_5g03812' => 'fve',
		'FvH4_5g11822' => 'fve',
		'FvH4_5g31701' => 'fve',
		'FvH4_6g12161' => 'fve',
		'FvH4_6g15222' => 'fve',
		'FvH4_6g15223' => 'fve',
		'FvH4_6g19301' => 'fve',
		'FvH4_6g33011' => 'fve',
		'FvH4_6g50161' => 'fve',
		'FvH4_7g04123' => 'fve',
		'FvH4_c7g00010' => 'fve',
		'Gorai.012G165300' => 'gra',
		'HanXRQChr00c0452g0574871' => 'han',
		'HanXRQChr01g0029471' => 'han',
		'HanXRQChr05g0133501' => 'han',
		'HanXRQChr10g0280141' => 'han',
		'HanXRQChr10g0280631' => 'han',
		'HanXRQChr13g0409991' => 'han',
		'HanXRQChr15g0468361' => 'han',
		'Hma1.2p1_0021F.1_g014270' => 'hma',
		'Hma1.2p1_0026F.1_g016730' => 'hma',
		'Hma1.2p1_0177F.1_g077930' => 'hma',
		'Hma1.2p1_0370F.1_g137540' => 'hma',
		'Hma1.2p1_0637F.1_g193600' => 'hma',
		'Hma1.2p1_1045F.1_g251360' => 'hma',
		'Hma1.2p1_1168F.1_g263120' => 'hma',
		'Hma1.2p1_1640F.1_g295040' => 'hma',
		'Hma1.2p1_2467F.1_g322660' => 'hma',
		'Hund01785' => 'sun',
		'Hund04739' => 'sun',
		'Hund07717' => 'sun',
		'Hund08060' => 'sun',
		'Hund08734' => 'sun',
		'Hund10876' => 'sun',
		'Hund14991' => 'sun',
		'Hund15051' => 'sun',
		'Hund15082' => 'sun',
		'Hund17998' => 'sun',
		'Hund18526' => 'sun',
		'Hund19828' => 'sun',
		'Hund23384' => 'sun',
		'Hund26399' => 'sun',
		'Hund28766' => 'sun',
		'Hund28768' => 'sun',
		'Lj1A487G33' => 'lonja',
		'Lj1A487G34' => 'lonja',
		'Lj1A489G15' => 'lonja',
		'Lj1C1113T3' => 'lonja',
		'Lj1C3T4' => 'lonja',
		'Lj1C763G4' => 'lonja',
		'Lj1P195T27' => 'lonja',
		'Lj1P573T13' => 'lonja',
		'Lj1P895T45' => 'lonja',
		'Lj1P995G28' => 'lonja',
		'Lj2A1125G46' => 'lonja',
		'Lj2C116T7' => 'lonja',
		'Lj2P295T30' => 'lonja',
		'Lj2P476T23' => 'lonja',
		'Lj2P603T27' => 'lonja',
		'Lj2P609T17' => 'lonja',
		'Lj2P727T24' => 'lonja',
		'Lj3C273T2' => 'lonja',
		'Lj3C644G3' => 'lonja',
		'Lj3C644G4' => 'lonja',
		'Lj3P463T4' => 'lonja',
		'Lj3P545T31' => 'lonja',
		'Lj3P820T55' => 'lonja',
		'Lj4C260T12' => 'lonja',
		'Lj4C714G8' => 'lonja',
		'Lj4P131T14' => 'lonja',
		'Lj4P131T15' => 'lonja',
		'Lj5C102G24' => 'lonja',
		'Lj5P491T3' => 'lonja',
		'Lj5P564T12' => 'lonja',
		'Lj5P786T11' => 'lonja',
		'Lj6C97T3' => 'lonja',
		'Lj8P523T19' => 'lonja',
		'Lj9A24G30' => 'lonja',
		'Lj9A424G33' => 'lonja',
		'Lj9C219G10' => 'lonja',
		'Lj9P219T12' => 'lonja',
		'Lj9P705T22' => 'lonja',
		'Lju114C4T7' => 'lonja',
		'Lju1220C5G5' => 'lonja',
		'Lju2092C1G1' => 'lonja',
		'Lju2092C1T0' => 'lonja',
		'Lju225C6G6' => 'lonja',
		'Lju427C2T0' => 'lonja',
		'Lju50C9T4' => 'lonja',
		'Lju926C12T2' => 'lonja',
		'Manes.06G126602' => 'mes',
		'Manes.13G002614' => 'mes',
		'Manes.15G192966' => 'mes',
		'Manes.17G001483' => 'mes',
		'Manes.17G022547' => 'mes',
		'Manes.18G042825' => 'mes',
		'Manes.S026816' => 'mes',
		'Manes.S027416' => 'mes',
		'MBI02_g15234_MAGBIO' => 'mbi',
		'MBI16_g35584_MAGBIO' => 'mbi',
		'MELO3C008948.2' => 'cme',
		'MELO3C010395.2' => 'cme',
		'MELO3C010396.2' => 'cme',
		'MELO3C015759.2' => 'cme',
		'MELO3C022607.2' => 'cme',
		'MELO3C028897.2' => 'cme',
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		'Sopen12g019150' => 'spe',
		'Sopen12g020560' => 'spe',
		'Sopen12g023320' => 'spe',
		'Sp3g24190' => 'spa',
		'Sp4g07270' => 'spa',
		'Sp4g07530' => 'spa',
		'Sp4g07670' => 'spa',
		'Sp6g09360' => 'spa',
		'Sp7g04180' => 'spa',
		'Sp7g04980' => 'spa',
		'Sp7g08200' => 'spa',
		'Sp7g09660' => 'spa',
		'SpUn0081_0010' => 'spa',
		'THA.LOC104803417' => 'tha',
		'THA.LOC104817059' => 'tha',
		'Thecc.01G188700' => 'tca',
		'Thecc.05G106700' => 'tca',
		'Thecc.06G068800' => 'tca',
		'Thecc.07G189100' => 'tca',
		'Thecc.09G172800' => 'tca',
		'Thhalv10023044m.g' => 'esa',
		'Thhalv10023881m.g' => 'esa',
		'Thhalv10024067m.g' => 'esa'
	),
	'gf_id' => 'HOM05D000691',
	'gf_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'gf_types_configuration' => array(
		'HOMFAM' => array(
			'order' => '1',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		),
		'ORTHOFAM' => array(
			'order' => '2',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		)
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'allow_async_use' => true,
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D000691'
	),
	'data_identifier' => 'HOM05D000691',
	'data_type' => 'gf_id'
)
$sidebar_info = array(
	'gf_id' => 'HOM05D000691',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '827',
	'num_species' => '39'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$gf_genes = array(
	'Ah.01g012340' => 'amhyb',
	'Ah.01g013530' => 'amhyb',
	'Ah.03g143080' => 'amhyb',
	'Ah.06g186750' => 'amhyb',
	'Ah.06g186800' => 'amhyb',
	'Ah.07g200050' => 'amhyb',
	'Ah.08g209110' => 'amhyb',
	'Ah.09g229600' => 'amhyb',
	'Ah.09g229610' => 'amhyb',
	'Ah.10g026490' => 'amhyb',
	'Ah.12g065350' => 'amhyb',
	'Ah.13g069310' => 'amhyb',
	'Ah.14g080130' => 'amhyb',
	'Ah.14g081130' => 'amhyb',
	'Ah.14g081140' => 'amhyb',
	'Ah.16g109160' => 'amhyb',
	'Ah.16g109170' => 'amhyb',
	'Ah.16g109370' => 'amhyb',
	'AL3G47720' => 'aly',
	'ATR0012G060' => 'atr',
	'ATR0026G029' => 'atr',
	'ATR0193G043' => 'atr',
	'ATR0561G076' => 'atr',
	'ATR0561G181' => 'atr',
	'ATR0568G014' => 'atr',
	'ATR0568G114' => 'atr',
	'ATR0620G039' => 'atr',
	'ATR0629G125' => 'atr',
	'ATR0661G583' => 'atr',
	'ATR0686G019' => 'atr',
	'ATR0693G232' => 'atr',
	'ATR0697G104' => 'atr',
	'ATR0789G146' => 'atr',
	'ATR0794G066' => 'atr',
	'ATR1127G127' => 'atr',
	'ATR1131G040' => 'atr',
	'ATR1134G004' => 'atr',
	'ATR1134G095' => 'atr',
	'ATR1152G110' => 'atr',
	'ATR1153G065' => 'atr',
	'Atru.chr3.2296' => 'acertr',
	'AUR62000692' => 'cqu',
	'AUR62001473' => 'cqu',
	'AUR62001812' => 'cqu',
	'AUR62002706' => 'cqu',
	'AUR62003904' => 'cqu',
	'AUR62003905' => 'cqu',
	'AUR62004840' => 'cqu',
	'AUR62005160' => 'cqu',
	'AUR62005604' => 'cqu',
	'AUR62005891' => 'cqu',
	'AUR62007290' => 'cqu',
	'AUR62007502' => 'cqu',
	'AUR62007923' => 'cqu',
	'AUR62009972' => 'cqu',
	'AUR62010488' => 'cqu',
	'AUR62010643' => 'cqu',
	'AUR62012637' => 'cqu',
	'AUR62013492' => 'cqu',
	'AUR62014239' => 'cqu',
	'AUR62014878' => 'cqu',
	'AUR62015857' => 'cqu',
	'AUR62016224' => 'cqu',
	'AUR62017430' => 'cqu',
	'AUR62017467' => 'cqu',
	'AUR62018234' => 'cqu',
	'AUR62019060' => 'cqu',
	'AUR62019607' => 'cqu',
	'AUR62019661' => 'cqu',
	'AUR62022775' => 'cqu',
	'AUR62023603' => 'cqu',
	'AUR62024563' => 'cqu',
	'AUR62026199' => 'cqu',
	'AUR62026905' => 'cqu',
	'AUR62028639' => 'cqu',
	'AUR62029168' => 'cqu',
	'AUR62029551' => 'cqu',
	'AUR62029860' => 'cqu',
	'AUR62030164' => 'cqu',
	'AUR62031208' => 'cqu',
	'AUR62031287' => 'cqu',
	'AUR62031817' => 'cqu',
	'AUR62032126' => 'cqu',
	'AUR62032358' => 'cqu',
	'AUR62032884' => 'cqu',
	'AUR62032892' => 'cqu',
	'AUR62033082' => 'cqu',
	'AUR62033100' => 'cqu',
	'AUR62033255' => 'cqu',
	'AUR62033698' => 'cqu',
	'AUR62033757' => 'cqu',
	'AUR62034760' => 'cqu',
	'AUR62034860' => 'cqu',
	'AUR62035179' => 'cqu',
	'AUR62035881' => 'cqu',
	'AUR62036824' => 'cqu',
	'AUR62036876' => 'cqu',
	'AUR62037319' => 'cqu',
	'AUR62037362' => 'cqu',
	'AUR62037541' => 'cqu',
	'AUR62037853' => 'cqu',
	'AUR62038299' => 'cqu',
	'AUR62038563' => 'cqu',
	'AUR62038564' => 'cqu',
	'AUR62038594' => 'cqu',
	'AUR62038792' => 'cqu',
	'AUR62038947' => 'cqu',
	'AUR62039030' => 'cqu',
	'AUR62039231' => 'cqu',
	'AUR62039452' => 'cqu',
	'AUR62040334' => 'cqu',
	'AUR62040869' => 'cqu',
	'AUR62040870' => 'cqu',
	'AUR62040916' => 'cqu',
	'AUR62041199' => 'cqu',
	'AUR62041334' => 'cqu',
	'AUR62041608' => 'cqu',
	'AUR62041609' => 'cqu',
	'AUR62041833' => 'cqu',
	'AUR62041834' => 'cqu',
	'AUR62042054' => 'cqu',
	'AUR62042134' => 'cqu',
	'AUR62042236' => 'cqu',
	'AUR62042281' => 'cqu',
	'AUR62042593' => 'cqu',
	'AUR62042653' => 'cqu',
	'AUR62043025' => 'cqu',
	'AUR62043026' => 'cqu',
	'AUR62043063' => 'cqu',
	'AUR62043091' => 'cqu',
	'AUR62043320' => 'cqu',
	'BolC5t32558H' => 'bol',
	'CAN.G1036.12' => 'can',
	'CAN.G1432.23' => 'can',
	'CAN.G159.19' => 'can',
	'CAN.G4114.1' => 'can',
	'CAN.G492.85' => 'can',
	'CAN.G500.95' => 'can',
	'CAN.G93.31' => 'can',
	'CiPaw.04G054900' => 'cil',
	'CiPaw.05G045400' => 'cil',
	'CiPaw.15G094100' => 'cil',
	'ClCG00G000700' => 'cla',
	'ClCG00G000780' => 'cla',
	'ClCG01G012280' => 'cla',
	'ClCG02G006140' => 'cla',
	'ClCG02G009810' => 'cla',
	'ClCG03G010170' => 'cla',
	'ClCG03G010260' => 'cla',
	'ClCG04G000770' => 'cla',
	'ClCG05G013980' => 'cla',
	'ClCG06G009110' => 'cla',
	'ClCG06G009120' => 'cla',
	'ClCG08G002190' => 'cla',
	'ClCG09G013830' => 'cla',
	'ClCG10G006760' => 'cla',
	'ClCG11G007310' => 'cla',
	'COL.COLO4_16141' => 'col',
	'Cpa.g.sc202.2' => 'cpa',
	'Cpa.g.sc76.18' => 'cpa',
	'CsaV3_1G031080' => 'csa',
	'CsaV3_4G011870' => 'csa',
	'CsaV3_4G014860' => 'csa',
	'CsaV3_4G021860' => 'csa',
	'CsaV3_6G009880' => 'csa',
	'CsaV3_7G021240' => 'csa',
	'CsaV3_UNG240600' => 'csa',
	'CSS0003516' => 'camsi',
	'CSS0013023' => 'camsi',
	'CSS0017680' => 'camsi',
	'CSS0018551' => 'camsi',
	'CSS0026792' => 'camsi',
	'CSS0028271' => 'camsi',
	'CSS0033603' => 'camsi',
	'CSS0040789' => 'camsi',
	'CSS0045068' => 'camsi',
	'CSS0045803' => 'camsi',
	'Dinv10528' => 'din',
	'Duzib116G0875' => 'dzi',
	'Duzib128G0055' => 'dzi',
	'EL10Ac1g02377' => 'bvu',
	'EL10Ac1g02378' => 'bvu',
	'EL10Ac2g03486' => 'bvu',
	'EL10Ac2g03487' => 'bvu',
	'EL10Ac3g05722' => 'bvu',
	'EL10Ac3g06186' => 'bvu',
	'EL10Ac5g11258' => 'bvu',
	'EL10Ac6g13831' => 'bvu',
	'EL10Ac6g14162' => 'bvu',
	'EL10Ac6g14316' => 'bvu',
	'EL10Ac6g14317' => 'bvu',
	'EL10Ac6g14588' => 'bvu',
	'EL10Ac7g16302' => 'bvu',
	'EL10Ac7g16543' => 'bvu',
	'EL10Ac8g18762' => 'bvu',
	'EL10Ac9g20847' => 'bvu',
	'EL10As7g23731' => 'bvu',
	'EL10As7g23732' => 'bvu',
	'FvH4_1g23713' => 'fve',
	'FvH4_2g00261' => 'fve',
	'FvH4_2g00262' => 'fve',
	'FvH4_2g15681' => 'fve',
	'FvH4_2g17851' => 'fve',
	'FvH4_3g10531' => 'fve',
	'FvH4_3g33536' => 'fve',
	'FvH4_4g03471' => 'fve',
	'FvH4_4g19351' => 'fve',
	'FvH4_4g34281' => 'fve',
	'FvH4_5g03811' => 'fve',
	'FvH4_5g03812' => 'fve',
	'FvH4_5g11822' => 'fve',
	'FvH4_5g31701' => 'fve',
	'FvH4_6g12161' => 'fve',
	'FvH4_6g15222' => 'fve',
	'FvH4_6g15223' => 'fve',
	'FvH4_6g19301' => 'fve',
	'FvH4_6g33011' => 'fve',
	'FvH4_6g50161' => 'fve',
	'FvH4_7g04123' => 'fve',
	'FvH4_c7g00010' => 'fve',
	'Gorai.012G165300' => 'gra',
	'HanXRQChr00c0452g0574871' => 'han',
	'HanXRQChr01g0029471' => 'han',
	'HanXRQChr05g0133501' => 'han',
	'HanXRQChr10g0280141' => 'han',
	'HanXRQChr10g0280631' => 'han',
	'HanXRQChr13g0409991' => 'han',
	'HanXRQChr15g0468361' => 'han',
	'Hma1.2p1_0021F.1_g014270' => 'hma',
	'Hma1.2p1_0026F.1_g016730' => 'hma',
	'Hma1.2p1_0177F.1_g077930' => 'hma',
	'Hma1.2p1_0370F.1_g137540' => 'hma',
	'Hma1.2p1_0637F.1_g193600' => 'hma',
	'Hma1.2p1_1045F.1_g251360' => 'hma',
	'Hma1.2p1_1168F.1_g263120' => 'hma',
	'Hma1.2p1_1640F.1_g295040' => 'hma',
	'Hma1.2p1_2467F.1_g322660' => 'hma',
	'Hund01785' => 'sun',
	'Hund04739' => 'sun',
	'Hund07717' => 'sun',
	'Hund08060' => 'sun',
	'Hund08734' => 'sun',
	'Hund10876' => 'sun',
	'Hund14991' => 'sun',
	'Hund15051' => 'sun',
	'Hund15082' => 'sun',
	'Hund17998' => 'sun',
	'Hund18526' => 'sun',
	'Hund19828' => 'sun',
	'Hund23384' => 'sun',
	'Hund26399' => 'sun',
	'Hund28766' => 'sun',
	'Hund28768' => 'sun',
	'Lj1A487G33' => 'lonja',
	'Lj1A487G34' => 'lonja',
	'Lj1A489G15' => 'lonja',
	'Lj1C1113T3' => 'lonja',
	'Lj1C3T4' => 'lonja',
	'Lj1C763G4' => 'lonja',
	'Lj1P195T27' => 'lonja',
	'Lj1P573T13' => 'lonja',
	'Lj1P895T45' => 'lonja',
	'Lj1P995G28' => 'lonja',
	'Lj2A1125G46' => 'lonja',
	'Lj2C116T7' => 'lonja',
	'Lj2P295T30' => 'lonja',
	'Lj2P476T23' => 'lonja',
	'Lj2P603T27' => 'lonja',
	'Lj2P609T17' => 'lonja',
	'Lj2P727T24' => 'lonja',
	'Lj3C273T2' => 'lonja',
	'Lj3C644G3' => 'lonja',
	'Lj3C644G4' => 'lonja',
	'Lj3P463T4' => 'lonja',
	'Lj3P545T31' => 'lonja',
	'Lj3P820T55' => 'lonja',
	'Lj4C260T12' => 'lonja',
	'Lj4C714G8' => 'lonja',
	'Lj4P131T14' => 'lonja',
	'Lj4P131T15' => 'lonja',
	'Lj5C102G24' => 'lonja',
	'Lj5P491T3' => 'lonja',
	'Lj5P564T12' => 'lonja',
	'Lj5P786T11' => 'lonja',
	'Lj6C97T3' => 'lonja',
	'Lj8P523T19' => 'lonja',
	'Lj9A24G30' => 'lonja',
	'Lj9A424G33' => 'lonja',
	'Lj9C219G10' => 'lonja',
	'Lj9P219T12' => 'lonja',
	'Lj9P705T22' => 'lonja',
	'Lju114C4T7' => 'lonja',
	'Lju1220C5G5' => 'lonja',
	'Lju2092C1G1' => 'lonja',
	'Lju2092C1T0' => 'lonja',
	'Lju225C6G6' => 'lonja',
	'Lju427C2T0' => 'lonja',
	'Lju50C9T4' => 'lonja',
	'Lju926C12T2' => 'lonja',
	'Manes.06G126602' => 'mes',
	'Manes.13G002614' => 'mes',
	'Manes.15G192966' => 'mes',
	'Manes.17G001483' => 'mes',
	'Manes.17G022547' => 'mes',
	'Manes.18G042825' => 'mes',
	'Manes.S026816' => 'mes',
	'Manes.S027416' => 'mes',
	'MBI02_g15234_MAGBIO' => 'mbi',
	'MBI16_g35584_MAGBIO' => 'mbi',
	'MELO3C008948.2' => 'cme',
	'MELO3C010395.2' => 'cme',
	'MELO3C010396.2' => 'cme',
	'MELO3C015759.2' => 'cme',
	'MELO3C022607.2' => 'cme',
	'MELO3C028897.2' => 'cme',
	'Oeu000188.1' => 'oeu',
	'Oeu002226.1' => 'oeu',
	'Oeu003087.1' => 'oeu',
	'Oeu003392.1' => 'oeu',
	'Oeu003523.1' => 'oeu',
	'Oeu003524.1' => 'oeu',
	'Oeu003528.1' => 'oeu',
	'Oeu003547.2' => 'oeu',
	'Oeu004677.1' => 'oeu',
	'Oeu005362.1' => 'oeu',
	'Oeu005833.1' => 'oeu',
	'Oeu005834.1' => 'oeu',
	'Oeu006751.1' => 'oeu',
	'Oeu007084.1' => 'oeu',
	'Oeu007264.1' => 'oeu',
	'Oeu008153.1' => 'oeu',
	'Oeu008228.1' => 'oeu',
	'Oeu008229.1' => 'oeu',
	'Oeu009580.1' => 'oeu',
	'Oeu010110.1' => 'oeu',
	'Oeu011704.1' => 'oeu',
	'Oeu011912.1' => 'oeu',
	'Oeu012057.1' => 'oeu',
	'Oeu012157.1' => 'oeu',
	'Oeu013775.1' => 'oeu',
	'Oeu013806.1' => 'oeu',
	'Oeu016457.1' => 'oeu',
	'Oeu016803.1' => 'oeu',
	'Oeu017243.2' => 'oeu',
	'Oeu017935.1' => 'oeu',
	'Oeu020246.2' => 'oeu',
	'Oeu020990.1' => 'oeu',
	'Oeu021941.1' => 'oeu',
	'Oeu021986.1' => 'oeu',
	'Oeu023578.1' => 'oeu',
	'Oeu024242.1' => 'oeu',
	'Oeu025087.1' => 'oeu',
	'Oeu025093.1' => 'oeu',
	'Oeu025412.1' => 'oeu',
	'Oeu025520.1' => 'oeu',
	'Oeu026473.1' => 'oeu',
	'Oeu027505.1' => 'oeu',
	'Oeu027530.1' => 'oeu',
	'Oeu027794.2' => 'oeu',
	'Oeu028951.1' => 'oeu',
	'Oeu029141.1' => 'oeu',
	'Oeu029231.4' => 'oeu',
	'Oeu029388.1' => 'oeu',
	'Oeu029673.1' => 'oeu',
	'Oeu029674.1' => 'oeu',
	'Oeu029748.1' => 'oeu',
	'Oeu030224.1' => 'oeu',
	'Oeu030243.1' => 'oeu',
	'Oeu030253.1' => 'oeu',
	'Oeu030414.1' => 'oeu',
	'Oeu030415.1' => 'oeu',
	'Oeu030472.1' => 'oeu',
	'Oeu031432.1' => 'oeu',
	'Oeu031697.1' => 'oeu',
	'Oeu032030.1' => 'oeu',
	'Oeu032031.1' => 'oeu',
	'Oeu032075.1' => 'oeu',
	'Oeu032737.1' => 'oeu',
	'Oeu033407.1' => 'oeu',
	'Oeu033485.1' => 'oeu',
	'Oeu034465.1' => 'oeu',
	'Oeu034951.1' => 'oeu',
	'Oeu036281.1' => 'oeu',
	'Oeu036931.1' => 'oeu',
	'Oeu036932.1' => 'oeu',
	'Oeu037340.1' => 'oeu',
	'Oeu037611.1' => 'oeu',
	'Oeu039205.1' => 'oeu',
	'Oeu039325.1' => 'oeu',
	'Oeu040999.1' => 'oeu',
	'Oeu041244.1' => 'oeu',
	'Oeu041682.1' => 'oeu',
	'Oeu041863.1' => 'oeu',
	'Oeu042345.1' => 'oeu',
	'Oeu042346.1' => 'oeu',
	'Oeu042671.1' => 'oeu',
	'Oeu043273.1' => 'oeu',
	'Oeu043573.1' => 'oeu',
	'Oeu044071.1' => 'oeu',
	'Oeu046813.1' => 'oeu',
	'Oeu048160.1' => 'oeu',
	'Oeu048162.1' => 'oeu',
	'Oeu048282.1' => 'oeu',
	'Oeu048297.1' => 'oeu',
	'Oeu048360.1' => 'oeu',
	'Oeu048565.1' => 'oeu',
	'Oeu049268.1' => 'oeu',
	'Oeu049465.1' => 'oeu',
	'Oeu049978.1' => 'oeu',
	'Oeu050628.1' => 'oeu',
	'Oeu050727.1' => 'oeu',
	'Oeu052065.1' => 'oeu',
	'Oeu052582.1' => 'oeu',
	'Oeu053090.1' => 'oeu',
	'Oeu053644.1' => 'oeu',
	'Oeu053713.1' => 'oeu',
	'Oeu055027.1' => 'oeu',
	'Oeu057741.1' => 'oeu',
	'Oeu058973.1' => 'oeu',
	'Oeu060366.1' => 'oeu',
	'Oeu061428.1' => 'oeu',
	'Oeu062087.1' => 'oeu',
	'Oeu062537.1' => 'oeu',
	'Oeu062538.1' => 'oeu',
	'Oeu064387.1' => 'oeu',
	'PGSC0003DMG400002344' => 'stu',
	'PGSC0003DMG400004046' => 'stu',
	'PGSC0003DMG400006418' => 'stu',
	'PGSC0003DMG400008410' => 'stu',
	'PGSC0003DMG400008620' => 'stu',
	'PGSC0003DMG400009504' => 'stu',
	'PGSC0003DMG400009845' => 'stu',
	'PGSC0003DMG400011177' => 'stu',
	'PGSC0003DMG400011629' => 'stu',
	'PGSC0003DMG400013586' => 'stu',
	'PGSC0003DMG400013599' => 'stu',
	'PGSC0003DMG400014534' => 'stu',
	'PGSC0003DMG400016055' => 'stu',
	'PGSC0003DMG400016736' => 'stu',
	'PGSC0003DMG400016866' => 'stu',
	'PGSC0003DMG400017701' => 'stu',
	'PGSC0003DMG400018448' => 'stu',
	'PGSC0003DMG400020751' => 'stu',
	'PGSC0003DMG400021088' => 'stu',
	'PGSC0003DMG400021387' => 'stu',
	'PGSC0003DMG400021640' => 'stu',
	'PGSC0003DMG400021704' => 'stu',
	'PGSC0003DMG400022155' => 'stu',
	'PGSC0003DMG400023544' => 'stu',
	'PGSC0003DMG400023564' => 'stu',
	'PGSC0003DMG400028558' => 'stu',
	'PGSC0003DMG400028618' => 'stu',
	'PGSC0003DMG400029149' => 'stu',
	'PGSC0003DMG400029979' => 'stu',
	'PGSC0003DMG400030069' => 'stu',
	'PGSC0003DMG400031272' => 'stu',
	'PGSC0003DMG400034656' => 'stu',
	'PGSC0003DMG400035151' => 'stu',
	'PGSC0003DMG400035741' => 'stu',
	'PGSC0003DMG400036100' => 'stu',
	'PGSC0003DMG400037683' => 'stu',
	'PGSC0003DMG400038046' => 'stu',
	'PGSC0003DMG400040121' => 'stu',
	'PGSC0003DMG400042113' => 'stu',
	'PGSC0003DMG400042218' => 'stu',
	'PGSC0003DMG400044188' => 'stu',
	'PGSC0003DMG400044323' => 'stu',
	'PGSC0003DMG400045014' => 'stu',
	'PGSC0003DMG400045177' => 'stu',
	'PGSC0003DMG400047199' => 'stu',
	'Potri.017G071366' => 'ptr',
	'RcHm_v2.0_Chr2g0137481' => 'rch',
	'Sc20g0003180' => 'sci',
	'SEGI_00305' => 'sgi',
	'SEGI_02246' => 'sgi',
	'SEGI_03696' => 'sgi',
	'SEGI_05490' => 'sgi',
	'SEGI_05682' => 'sgi',
	'SEGI_05900' => 'sgi',
	'SEGI_06517' => 'sgi',
	'SEGI_12587' => 'sgi',
	'SEGI_13129' => 'sgi',
	'SEGI_16935' => 'sgi',
	'SEGI_18008' => 'sgi',
	'SEGI_18224' => 'sgi',
	'SEGI_20188' => 'sgi',
	'SEGI_20772' => 'sgi',
	'SEGI_20842' => 'sgi',
	'SEGI_22270' => 'sgi',
	'SEGI_22705' => 'sgi',
	'SEGI_23638' => 'sgi',
	'SEGI_23928' => 'sgi',
	'SEGI_24790' => 'sgi',
	'SEGI_28421' => 'sgi',
	'SEGI_28832' => 'sgi',
	'SEGI_29884' => 'sgi',
	'SEGI_30829' => 'sgi',
	'SEGI_35046' => 'sgi',
	'SEGI_35582' => 'sgi',
	'SEGI_37882' => 'sgi',
	'SEGI_39680' => 'sgi',
	'SEGI_40069' => 'sgi',
	'SEGI_40087' => 'sgi',
	'SEGI_41606' => 'sgi',
	'SGA_v2.0_scaffold50G18578' => 'sas',
	'SHI00293' => 'shi',
	'SHI00389' => 'shi',
	'SHI00445' => 'shi',
	'SHI01000' => 'shi',
	'SHI01503' => 'shi',
	'SHI01718' => 'shi',
	'SHI03454' => 'shi',
	'SHI03493' => 'shi',
	'SHI03494' => 'shi',
	'SHI03628' => 'shi',
	'SHI04457' => 'shi',
	'SHI04691' => 'shi',
	'SHI04829' => 'shi',
	'SHI05225' => 'shi',
	'SHI06326' => 'shi',
	'SHI06505' => 'shi',
	'SHI06770' => 'shi',
	'SHI07388' => 'shi',
	'SHI07582' => 'shi',
	'SHI07583' => 'shi',
	'SHI08271' => 'shi',
	'SHI10619' => 'shi',
	'SHI10892' => 'shi',
	'SHI10910' => 'shi',
	'SHI10911' => 'shi',
	'SHI14326' => 'shi',
	'SHI14681' => 'shi',
	'SHI15017' => 'shi',
	'SHI15096' => 'shi',
	'SHI15120' => 'shi',
	'SHI15274' => 'shi',
	'SHI16232' => 'shi',
	'SHI16811' => 'shi',
	'SHI17386' => 'shi',
	'SHI17926' => 'shi',
	'SHI18293' => 'shi',
	'SHI20489' => 'shi',
	'SHI20658' => 'shi',
	'SHI20663' => 'shi',
	'SHI21566' => 'shi',
	'SHI22547' => 'shi',
	'SHI22708' => 'shi',
	'SHI22709' => 'shi',
	'SHI22878' => 'shi',
	'SHI22879' => 'shi',
	'SHI23024' => 'shi',
	'SHI25053' => 'shi',
	'SHI25076' => 'shi',
	'SHI25116' => 'shi',
	'SHI25381' => 'shi',
	'SHI25535' => 'shi',
	'SHI25740' => 'shi',
	'SHI25991' => 'shi',
	'SHI26344' => 'shi',
	'SHI26345' => 'shi',
	'SHI27097' => 'shi',
	'SHI27140' => 'shi',
	'SHI27178' => 'shi',
	'SHI27207' => 'shi',
	'SHI27225' => 'shi',
	'SHI27734' => 'shi',
	'SHI27806' => 'shi',
	'SHI28576' => 'shi',
	'SHI29081' => 'shi',
	'SHI30038' => 'shi',
	'SHI30394' => 'shi',
	'SHI30652' => 'shi',
	'SHI32154' => 'shi',
	'SHI32205' => 'shi',
	'SHI32365' => 'shi',
	'SHI32439' => 'shi',
	'SHI32505' => 'shi',
	'SHI32626' => 'shi',
	'SHI32714' => 'shi',
	'SHI32715' => 'shi',
	'SHI32716' => 'shi',
	'SHI33118' => 'shi',
	'SHI33318' => 'shi',
	'SHI33373' => 'shi',
	'SHI33512' => 'shi',
	'SHI33625' => 'shi',
	'SHI34327' => 'shi',
	'SHI35604' => 'shi',
	'SHI36119' => 'shi',
	'SHI36120' => 'shi',
	'SHI44959' => 'shi',
	'SHI46406' => 'shi',
	'SHI48191' => 'shi',
	'SHI48192' => 'shi',
	'Solyc10g150111.1' => 'sly',
	'Solyc12g062340.2' => 'sly',
	'Sopen00g001750' => 'spe',
	'Sopen00g001820' => 'spe',
	'Sopen00g001830' => 'spe',
	'Sopen00g001890' => 'spe',
	'Sopen00g002240' => 'spe',
	'Sopen00g003950' => 'spe',
	'Sopen00g004130' => 'spe',
	'Sopen00g004810' => 'spe',
	'Sopen00g005120' => 'spe',
	'Sopen00g005190' => 'spe',
	'Sopen00g007000' => 'spe',
	'Sopen00g007210' => 'spe',
	'Sopen00g012840' => 'spe',
	'Sopen00g013060' => 'spe',
	'Sopen00g013610' => 'spe',
	'Sopen00g013630' => 'spe',
	'Sopen01g004610' => 'spe',
	'Sopen01g007660' => 'spe',
	'Sopen01g007750' => 'spe',
	'Sopen01g007760' => 'spe',
	'Sopen01g007770' => 'spe',
	'Sopen01g007860' => 'spe',
	'Sopen01g009130' => 'spe',
	'Sopen01g009820' => 'spe',
	'Sopen01g011240' => 'spe',
	'Sopen01g012740' => 'spe',
	'Sopen01g013840' => 'spe',
	'Sopen01g013850' => 'spe',
	'Sopen01g016140' => 'spe',
	'Sopen01g016150' => 'spe',
	'Sopen01g016830' => 'spe',
	'Sopen01g017260' => 'spe',
	'Sopen01g019000' => 'spe',
	'Sopen01g019690' => 'spe',
	'Sopen01g022160' => 'spe',
	'Sopen01g024000' => 'spe',
	'Sopen01g024670' => 'spe',
	'Sopen01g024770' => 'spe',
	'Sopen01g024900' => 'spe',
	'Sopen01g025130' => 'spe',
	'Sopen01g026370' => 'spe',
	'Sopen01g041640' => 'spe',
	'Sopen01g046930' => 'spe',
	'Sopen02g001360' => 'spe',
	'Sopen02g002010' => 'spe',
	'Sopen02g003600' => 'spe',
	'Sopen02g003730' => 'spe',
	'Sopen02g005430' => 'spe',
	'Sopen02g005510' => 'spe',
	'Sopen02g006840' => 'spe',
	'Sopen02g007390' => 'spe',
	'Sopen02g007420' => 'spe',
	'Sopen02g007540' => 'spe',
	'Sopen02g007920' => 'spe',
	'Sopen02g008960' => 'spe',
	'Sopen02g009450' => 'spe',
	'Sopen02g009460' => 'spe',
	'Sopen02g011320' => 'spe',
	'Sopen02g012680' => 'spe',
	'Sopen02g018090' => 'spe',
	'Sopen02g022140' => 'spe',
	'Sopen03g010330' => 'spe',
	'Sopen03g013130' => 'spe',
	'Sopen03g013180' => 'spe',
	'Sopen03g013230' => 'spe',
	'Sopen03g014110' => 'spe',
	'Sopen03g015260' => 'spe',
	'Sopen03g015790' => 'spe',
	'Sopen03g018360' => 'spe',
	'Sopen03g024470' => 'spe',
	'Sopen03g026800' => 'spe',
	'Sopen04g003180' => 'spe',
	'Sopen04g008260' => 'spe',
	'Sopen04g010320' => 'spe',
	'Sopen04g011020' => 'spe',
	'Sopen04g011200' => 'spe',
	'Sopen04g011280' => 'spe',
	'Sopen04g021910' => 'spe',
	'Sopen04g023870' => 'spe',
	'Sopen05g009880' => 'spe',
	'Sopen05g011580' => 'spe',
	'Sopen05g012230' => 'spe',
	'Sopen05g012500' => 'spe',
	'Sopen05g012560' => 'spe',
	'Sopen05g012570' => 'spe',
	'Sopen05g012760' => 'spe',
	'Sopen05g013710' => 'spe',
	'Sopen05g015050' => 'spe',
	'Sopen05g026090' => 'spe',
	'Sopen05g028020' => 'spe',
	'Sopen05g028610' => 'spe',
	'Sopen05g029300' => 'spe',
	'Sopen06g005520' => 'spe',
	'Sopen06g006750' => 'spe',
	'Sopen06g008160' => 'spe',
	'Sopen06g009120' => 'spe',
	'Sopen06g013550' => 'spe',
	'Sopen06g015340' => 'spe',
	'Sopen06g018330' => 'spe',
	'Sopen06g021630' => 'spe',
	'Sopen06g021650' => 'spe',
	'Sopen07g006730' => 'spe',
	'Sopen07g008690' => 'spe',
	'Sopen07g008700' => 'spe',
	'Sopen07g008720' => 'spe',
	'Sopen07g008870' => 'spe',
	'Sopen07g009400' => 'spe',
	'Sopen07g009410' => 'spe',
	'Sopen07g009470' => 'spe',
	'Sopen07g009540' => 'spe',
	'Sopen07g011060' => 'spe',
	'Sopen07g011110' => 'spe',
	'Sopen07g011820' => 'spe',
	'Sopen07g013260' => 'spe',
	'Sopen07g014740' => 'spe',
	'Sopen07g015160' => 'spe',
	'Sopen07g015230' => 'spe',
	'Sopen07g016240' => 'spe',
	'Sopen07g017200' => 'spe',
	'Sopen07g017810' => 'spe',
	'Sopen07g019030' => 'spe',
	'Sopen07g020430' => 'spe',
	'Sopen07g021010' => 'spe',
	'Sopen07g021340' => 'spe',
	'Sopen07g022950' => 'spe',
	'Sopen07g027860' => 'spe',
	'Sopen08g007820' => 'spe',
	'Sopen08g009330' => 'spe',
	'Sopen08g012310' => 'spe',
	'Sopen08g012560' => 'spe',
	'Sopen08g014040' => 'spe',
	'Sopen08g014650' => 'spe',
	'Sopen08g017020' => 'spe',
	'Sopen08g018300' => 'spe',
	'Sopen08g020530' => 'spe',
	'Sopen09g008590' => 'spe',
	'Sopen09g008780' => 'spe',
	'Sopen09g011540' => 'spe',
	'Sopen09g011920' => 'spe',
	'Sopen09g014170' => 'spe',
	'Sopen09g016520' => 'spe',
	'Sopen09g021030' => 'spe',
	'Sopen09g023110' => 'spe',
	'Sopen09g024750' => 'spe',
	'Sopen09g025230' => 'spe',
	'Sopen09g025600' => 'spe',
	'Sopen09g034660' => 'spe',
	'Sopen10g006700' => 'spe',
	'Sopen10g009130' => 'spe',
	'Sopen10g009140' => 'spe',
	'Sopen10g009560' => 'spe',
	'Sopen10g010340' => 'spe',
	'Sopen10g011040' => 'spe',
	'Sopen10g013650' => 'spe',
	'Sopen10g014130' => 'spe',
	'Sopen10g014140' => 'spe',
	'Sopen10g014760' => 'spe',
	'Sopen10g015080' => 'spe',
	'Sopen10g015830' => 'spe',
	'Sopen10g018240' => 'spe',
	'Sopen10g018300' => 'spe',
	'Sopen10g018350' => 'spe',
	'Sopen10g018460' => 'spe',
	'Sopen10g018670' => 'spe',
	'Sopen10g019040' => 'spe',
	'Sopen10g019330' => 'spe',
	'Sopen10g019340' => 'spe',
	'Sopen10g019360' => 'spe',
	'Sopen10g019370' => 'spe',
	'Sopen10g020620' => 'spe',
	'Sopen10g021550' => 'spe',
	'Sopen10g022160' => 'spe',
	'Sopen10g023540' => 'spe',
	'Sopen10g023570' => 'spe',
	'Sopen10g023580' => 'spe',
	'Sopen10g023600' => 'spe',
	'Sopen10g023620' => 'spe',
	'Sopen10g023650' => 'spe',
	'Sopen10g024800' => 'spe',
	'Sopen10g026170' => 'spe',
	'Sopen11g007790' => 'spe',
	'Sopen11g010170' => 'spe',
	'Sopen11g010580' => 'spe',
	'Sopen11g013420' => 'spe',
	'Sopen11g016330' => 'spe',
	'Sopen11g017010' => 'spe',
	'Sopen11g018110' => 'spe',
	'Sopen11g018960' => 'spe',
	'Sopen11g019000' => 'spe',
	'Sopen11g019970' => 'spe',
	'Sopen11g020340' => 'spe',
	'Sopen11g020970' => 'spe',
	'Sopen12g008510' => 'spe',
	'Sopen12g008910' => 'spe',
	'Sopen12g009010' => 'spe',
	'Sopen12g009120' => 'spe',
	'Sopen12g009340' => 'spe',
	'Sopen12g009580' => 'spe',
	'Sopen12g010190' => 'spe',
	'Sopen12g010320' => 'spe',
	'Sopen12g010370' => 'spe',
	'Sopen12g012140' => 'spe',
	'Sopen12g012700' => 'spe',
	'Sopen12g013490' => 'spe',
	'Sopen12g014290' => 'spe',
	'Sopen12g015060' => 'spe',
	'Sopen12g015610' => 'spe',
	'Sopen12g018380' => 'spe',
	'Sopen12g019150' => 'spe',
	'Sopen12g020560' => 'spe',
	'Sopen12g023320' => 'spe',
	'Sp3g24190' => 'spa',
	'Sp4g07270' => 'spa',
	'Sp4g07530' => 'spa',
	'Sp4g07670' => 'spa',
	'Sp6g09360' => 'spa',
	'Sp7g04180' => 'spa',
	'Sp7g04980' => 'spa',
	'Sp7g08200' => 'spa',
	'Sp7g09660' => 'spa',
	'SpUn0081_0010' => 'spa',
	'THA.LOC104803417' => 'tha',
	'THA.LOC104817059' => 'tha',
	'Thecc.01G188700' => 'tca',
	'Thecc.05G106700' => 'tca',
	'Thecc.06G068800' => 'tca',
	'Thecc.07G189100' => 'tca',
	'Thecc.09G172800' => 'tca',
	'Thhalv10023044m.g' => 'esa',
	'Thhalv10023881m.g' => 'esa',
	'Thhalv10024067m.g' => 'esa'
)
$gf_id = 'HOM05D000691'
$gf_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$gf_types_configuration = array(
	'HOMFAM' => array(
		'order' => '1',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	),
	'ORTHOFAM' => array(
		'order' => '2',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	)
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$allow_async_use = true
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D000691'
)
$data_identifier = 'HOM05D000691'
$data_type = 'gf_id'
$species_gene_counts = array(
	'amhyb' => (int) 18,
	'aly' => (int) 1,
	'atr' => (int) 21,
	'acertr' => (int) 1,
	'cqu' => (int) 90,
	'bol' => (int) 1,
	'can' => (int) 7,
	'cil' => (int) 3,
	'cla' => (int) 15,
	'col' => (int) 1,
	'cpa' => (int) 2,
	'csa' => (int) 7,
	'camsi' => (int) 10,
	'din' => (int) 1,
	'dzi' => (int) 2,
	'bvu' => (int) 18,
	'fve' => (int) 22,
	'gra' => (int) 1,
	'han' => (int) 7,
	'hma' => (int) 9,
	'sun' => (int) 16,
	'lonja' => (int) 46,
	'mes' => (int) 8,
	'mbi' => (int) 2,
	'cme' => (int) 6,
	'oeu' => (int) 110,
	'stu' => (int) 45,
	'ptr' => (int) 1,
	'rch' => (int) 1,
	'sci' => (int) 1,
	'sgi' => (int) 31,
	'sas' => (int) 1,
	'shi' => (int) 89,
	'sly' => (int) 2,
	'spe' => (int) 211,
	'spa' => (int) 10,
	'tha' => (int) 2,
	'tca' => (int) 5,
	'esa' => (int) 3
)
$gf_gene_species = 'esa'
$gf_gene_id = 'Thhalv10024067m.g'
$species_info = array(
	'species' => 'col',
	'common_name' => 'Corchorus olitorius',
	'tax_id' => '93759',
	'version' => 'GenBank v1.0'
)
$local_species = 'col'
$disabled = ''
$selected = ''
$num_hits = (int) 0
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Analysis/custom_tree_creation.ctp, line 27
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933

Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]
Code Context
        $disabled    = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";

        $selected    = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";

        $num_hits    = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D000691',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '827',
		'num_species' => '39'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'gf_genes' => array(
		'Ah.01g012340' => 'amhyb',
		'Ah.01g013530' => 'amhyb',
		'Ah.03g143080' => 'amhyb',
		'Ah.06g186750' => 'amhyb',
		'Ah.06g186800' => 'amhyb',
		'Ah.07g200050' => 'amhyb',
		'Ah.08g209110' => 'amhyb',
		'Ah.09g229600' => 'amhyb',
		'Ah.09g229610' => 'amhyb',
		'Ah.10g026490' => 'amhyb',
		'Ah.12g065350' => 'amhyb',
		'Ah.13g069310' => 'amhyb',
		'Ah.14g080130' => 'amhyb',
		'Ah.14g081130' => 'amhyb',
		'Ah.14g081140' => 'amhyb',
		'Ah.16g109160' => 'amhyb',
		'Ah.16g109170' => 'amhyb',
		'Ah.16g109370' => 'amhyb',
		'AL3G47720' => 'aly',
		'ATR0012G060' => 'atr',
		'ATR0026G029' => 'atr',
		'ATR0193G043' => 'atr',
		'ATR0561G076' => 'atr',
		'ATR0561G181' => 'atr',
		'ATR0568G014' => 'atr',
		'ATR0568G114' => 'atr',
		'ATR0620G039' => 'atr',
		'ATR0629G125' => 'atr',
		'ATR0661G583' => 'atr',
		'ATR0686G019' => 'atr',
		'ATR0693G232' => 'atr',
		'ATR0697G104' => 'atr',
		'ATR0789G146' => 'atr',
		'ATR0794G066' => 'atr',
		'ATR1127G127' => 'atr',
		'ATR1131G040' => 'atr',
		'ATR1134G004' => 'atr',
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		'SEGI_35046' => 'sgi',
		'SEGI_35582' => 'sgi',
		'SEGI_37882' => 'sgi',
		'SEGI_39680' => 'sgi',
		'SEGI_40069' => 'sgi',
		'SEGI_40087' => 'sgi',
		'SEGI_41606' => 'sgi',
		'SGA_v2.0_scaffold50G18578' => 'sas',
		'SHI00293' => 'shi',
		'SHI00389' => 'shi',
		'SHI00445' => 'shi',
		'SHI01000' => 'shi',
		'SHI01503' => 'shi',
		'SHI01718' => 'shi',
		'SHI03454' => 'shi',
		'SHI03493' => 'shi',
		'SHI03494' => 'shi',
		'SHI03628' => 'shi',
		'SHI04457' => 'shi',
		'SHI04691' => 'shi',
		'SHI04829' => 'shi',
		'SHI05225' => 'shi',
		'SHI06326' => 'shi',
		'SHI06505' => 'shi',
		'SHI06770' => 'shi',
		'SHI07388' => 'shi',
		'SHI07582' => 'shi',
		'SHI07583' => 'shi',
		'SHI08271' => 'shi',
		'SHI10619' => 'shi',
		'SHI10892' => 'shi',
		'SHI10910' => 'shi',
		'SHI10911' => 'shi',
		'SHI14326' => 'shi',
		'SHI14681' => 'shi',
		'SHI15017' => 'shi',
		'SHI15096' => 'shi',
		'SHI15120' => 'shi',
		'SHI15274' => 'shi',
		'SHI16232' => 'shi',
		'SHI16811' => 'shi',
		'SHI17386' => 'shi',
		'SHI17926' => 'shi',
		'SHI18293' => 'shi',
		'SHI20489' => 'shi',
		'SHI20658' => 'shi',
		'SHI20663' => 'shi',
		'SHI21566' => 'shi',
		'SHI22547' => 'shi',
		'SHI22708' => 'shi',
		'SHI22709' => 'shi',
		'SHI22878' => 'shi',
		'SHI22879' => 'shi',
		'SHI23024' => 'shi',
		'SHI25053' => 'shi',
		'SHI25076' => 'shi',
		'SHI25116' => 'shi',
		'SHI25381' => 'shi',
		'SHI25535' => 'shi',
		'SHI25740' => 'shi',
		'SHI25991' => 'shi',
		'SHI26344' => 'shi',
		'SHI26345' => 'shi',
		'SHI27097' => 'shi',
		'SHI27140' => 'shi',
		'SHI27178' => 'shi',
		'SHI27207' => 'shi',
		'SHI27225' => 'shi',
		'SHI27734' => 'shi',
		'SHI27806' => 'shi',
		'SHI28576' => 'shi',
		'SHI29081' => 'shi',
		'SHI30038' => 'shi',
		'SHI30394' => 'shi',
		'SHI30652' => 'shi',
		'SHI32154' => 'shi',
		'SHI32205' => 'shi',
		'SHI32365' => 'shi',
		'SHI32439' => 'shi',
		'SHI32505' => 'shi',
		'SHI32626' => 'shi',
		'SHI32714' => 'shi',
		'SHI32715' => 'shi',
		'SHI32716' => 'shi',
		'SHI33118' => 'shi',
		'SHI33318' => 'shi',
		'SHI33373' => 'shi',
		'SHI33512' => 'shi',
		'SHI33625' => 'shi',
		'SHI34327' => 'shi',
		'SHI35604' => 'shi',
		'SHI36119' => 'shi',
		'SHI36120' => 'shi',
		'SHI44959' => 'shi',
		'SHI46406' => 'shi',
		'SHI48191' => 'shi',
		'SHI48192' => 'shi',
		'Solyc10g150111.1' => 'sly',
		'Solyc12g062340.2' => 'sly',
		'Sopen00g001750' => 'spe',
		'Sopen00g001820' => 'spe',
		'Sopen00g001830' => 'spe',
		'Sopen00g001890' => 'spe',
		'Sopen00g002240' => 'spe',
		'Sopen00g003950' => 'spe',
		'Sopen00g004130' => 'spe',
		'Sopen00g004810' => 'spe',
		'Sopen00g005120' => 'spe',
		'Sopen00g005190' => 'spe',
		'Sopen00g007000' => 'spe',
		'Sopen00g007210' => 'spe',
		'Sopen00g012840' => 'spe',
		'Sopen00g013060' => 'spe',
		'Sopen00g013610' => 'spe',
		'Sopen00g013630' => 'spe',
		'Sopen01g004610' => 'spe',
		'Sopen01g007660' => 'spe',
		'Sopen01g007750' => 'spe',
		'Sopen01g007760' => 'spe',
		'Sopen01g007770' => 'spe',
		'Sopen01g007860' => 'spe',
		'Sopen01g009130' => 'spe',
		'Sopen01g009820' => 'spe',
		'Sopen01g011240' => 'spe',
		'Sopen01g012740' => 'spe',
		'Sopen01g013840' => 'spe',
		'Sopen01g013850' => 'spe',
		'Sopen01g016140' => 'spe',
		'Sopen01g016150' => 'spe',
		'Sopen01g016830' => 'spe',
		'Sopen01g017260' => 'spe',
		'Sopen01g019000' => 'spe',
		'Sopen01g019690' => 'spe',
		'Sopen01g022160' => 'spe',
		'Sopen01g024000' => 'spe',
		'Sopen01g024670' => 'spe',
		'Sopen01g024770' => 'spe',
		'Sopen01g024900' => 'spe',
		'Sopen01g025130' => 'spe',
		'Sopen01g026370' => 'spe',
		'Sopen01g041640' => 'spe',
		'Sopen01g046930' => 'spe',
		'Sopen02g001360' => 'spe',
		'Sopen02g002010' => 'spe',
		'Sopen02g003600' => 'spe',
		'Sopen02g003730' => 'spe',
		'Sopen02g005430' => 'spe',
		'Sopen02g005510' => 'spe',
		'Sopen02g006840' => 'spe',
		'Sopen02g007390' => 'spe',
		'Sopen02g007420' => 'spe',
		'Sopen02g007540' => 'spe',
		'Sopen02g007920' => 'spe',
		'Sopen02g008960' => 'spe',
		'Sopen02g009450' => 'spe',
		'Sopen02g009460' => 'spe',
		'Sopen02g011320' => 'spe',
		'Sopen02g012680' => 'spe',
		'Sopen02g018090' => 'spe',
		'Sopen02g022140' => 'spe',
		'Sopen03g010330' => 'spe',
		'Sopen03g013130' => 'spe',
		'Sopen03g013180' => 'spe',
		'Sopen03g013230' => 'spe',
		'Sopen03g014110' => 'spe',
		'Sopen03g015260' => 'spe',
		'Sopen03g015790' => 'spe',
		'Sopen03g018360' => 'spe',
		'Sopen03g024470' => 'spe',
		'Sopen03g026800' => 'spe',
		'Sopen04g003180' => 'spe',
		'Sopen04g008260' => 'spe',
		'Sopen04g010320' => 'spe',
		'Sopen04g011020' => 'spe',
		'Sopen04g011200' => 'spe',
		'Sopen04g011280' => 'spe',
		'Sopen04g021910' => 'spe',
		'Sopen04g023870' => 'spe',
		'Sopen05g009880' => 'spe',
		'Sopen05g011580' => 'spe',
		'Sopen05g012230' => 'spe',
		'Sopen05g012500' => 'spe',
		'Sopen05g012560' => 'spe',
		'Sopen05g012570' => 'spe',
		'Sopen05g012760' => 'spe',
		'Sopen05g013710' => 'spe',
		'Sopen05g015050' => 'spe',
		'Sopen05g026090' => 'spe',
		'Sopen05g028020' => 'spe',
		'Sopen05g028610' => 'spe',
		'Sopen05g029300' => 'spe',
		'Sopen06g005520' => 'spe',
		'Sopen06g006750' => 'spe',
		'Sopen06g008160' => 'spe',
		'Sopen06g009120' => 'spe',
		'Sopen06g013550' => 'spe',
		'Sopen06g015340' => 'spe',
		'Sopen06g018330' => 'spe',
		'Sopen06g021630' => 'spe',
		'Sopen06g021650' => 'spe',
		'Sopen07g006730' => 'spe',
		'Sopen07g008690' => 'spe',
		'Sopen07g008700' => 'spe',
		'Sopen07g008720' => 'spe',
		'Sopen07g008870' => 'spe',
		'Sopen07g009400' => 'spe',
		'Sopen07g009410' => 'spe',
		'Sopen07g009470' => 'spe',
		'Sopen07g009540' => 'spe',
		'Sopen07g011060' => 'spe',
		'Sopen07g011110' => 'spe',
		'Sopen07g011820' => 'spe',
		'Sopen07g013260' => 'spe',
		'Sopen07g014740' => 'spe',
		'Sopen07g015160' => 'spe',
		'Sopen07g015230' => 'spe',
		'Sopen07g016240' => 'spe',
		'Sopen07g017200' => 'spe',
		'Sopen07g017810' => 'spe',
		'Sopen07g019030' => 'spe',
		'Sopen07g020430' => 'spe',
		'Sopen07g021010' => 'spe',
		'Sopen07g021340' => 'spe',
		'Sopen07g022950' => 'spe',
		'Sopen07g027860' => 'spe',
		'Sopen08g007820' => 'spe',
		'Sopen08g009330' => 'spe',
		'Sopen08g012310' => 'spe',
		'Sopen08g012560' => 'spe',
		'Sopen08g014040' => 'spe',
		'Sopen08g014650' => 'spe',
		'Sopen08g017020' => 'spe',
		'Sopen08g018300' => 'spe',
		'Sopen08g020530' => 'spe',
		'Sopen09g008590' => 'spe',
		'Sopen09g008780' => 'spe',
		'Sopen09g011540' => 'spe',
		'Sopen09g011920' => 'spe',
		'Sopen09g014170' => 'spe',
		'Sopen09g016520' => 'spe',
		'Sopen09g021030' => 'spe',
		'Sopen09g023110' => 'spe',
		'Sopen09g024750' => 'spe',
		'Sopen09g025230' => 'spe',
		'Sopen09g025600' => 'spe',
		'Sopen09g034660' => 'spe',
		'Sopen10g006700' => 'spe',
		'Sopen10g009130' => 'spe',
		'Sopen10g009140' => 'spe',
		'Sopen10g009560' => 'spe',
		'Sopen10g010340' => 'spe',
		'Sopen10g011040' => 'spe',
		'Sopen10g013650' => 'spe',
		'Sopen10g014130' => 'spe',
		'Sopen10g014140' => 'spe',
		'Sopen10g014760' => 'spe',
		'Sopen10g015080' => 'spe',
		'Sopen10g015830' => 'spe',
		'Sopen10g018240' => 'spe',
		'Sopen10g018300' => 'spe',
		'Sopen10g018350' => 'spe',
		'Sopen10g018460' => 'spe',
		'Sopen10g018670' => 'spe',
		'Sopen10g019040' => 'spe',
		'Sopen10g019330' => 'spe',
		'Sopen10g019340' => 'spe',
		'Sopen10g019360' => 'spe',
		'Sopen10g019370' => 'spe',
		'Sopen10g020620' => 'spe',
		'Sopen10g021550' => 'spe',
		'Sopen10g022160' => 'spe',
		'Sopen10g023540' => 'spe',
		'Sopen10g023570' => 'spe',
		'Sopen10g023580' => 'spe',
		'Sopen10g023600' => 'spe',
		'Sopen10g023620' => 'spe',
		'Sopen10g023650' => 'spe',
		'Sopen10g024800' => 'spe',
		'Sopen10g026170' => 'spe',
		'Sopen11g007790' => 'spe',
		'Sopen11g010170' => 'spe',
		'Sopen11g010580' => 'spe',
		'Sopen11g013420' => 'spe',
		'Sopen11g016330' => 'spe',
		'Sopen11g017010' => 'spe',
		'Sopen11g018110' => 'spe',
		'Sopen11g018960' => 'spe',
		'Sopen11g019000' => 'spe',
		'Sopen11g019970' => 'spe',
		'Sopen11g020340' => 'spe',
		'Sopen11g020970' => 'spe',
		'Sopen12g008510' => 'spe',
		'Sopen12g008910' => 'spe',
		'Sopen12g009010' => 'spe',
		'Sopen12g009120' => 'spe',
		'Sopen12g009340' => 'spe',
		'Sopen12g009580' => 'spe',
		'Sopen12g010190' => 'spe',
		'Sopen12g010320' => 'spe',
		'Sopen12g010370' => 'spe',
		'Sopen12g012140' => 'spe',
		'Sopen12g012700' => 'spe',
		'Sopen12g013490' => 'spe',
		'Sopen12g014290' => 'spe',
		'Sopen12g015060' => 'spe',
		'Sopen12g015610' => 'spe',
		'Sopen12g018380' => 'spe',
		'Sopen12g019150' => 'spe',
		'Sopen12g020560' => 'spe',
		'Sopen12g023320' => 'spe',
		'Sp3g24190' => 'spa',
		'Sp4g07270' => 'spa',
		'Sp4g07530' => 'spa',
		'Sp4g07670' => 'spa',
		'Sp6g09360' => 'spa',
		'Sp7g04180' => 'spa',
		'Sp7g04980' => 'spa',
		'Sp7g08200' => 'spa',
		'Sp7g09660' => 'spa',
		'SpUn0081_0010' => 'spa',
		'THA.LOC104803417' => 'tha',
		'THA.LOC104817059' => 'tha',
		'Thecc.01G188700' => 'tca',
		'Thecc.05G106700' => 'tca',
		'Thecc.06G068800' => 'tca',
		'Thecc.07G189100' => 'tca',
		'Thecc.09G172800' => 'tca',
		'Thhalv10023044m.g' => 'esa',
		'Thhalv10023881m.g' => 'esa',
		'Thhalv10024067m.g' => 'esa'
	),
	'gf_id' => 'HOM05D000691',
	'gf_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'gf_types_configuration' => array(
		'HOMFAM' => array(
			'order' => '1',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		),
		'ORTHOFAM' => array(
			'order' => '2',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		)
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'allow_async_use' => true,
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D000691'
	),
	'data_identifier' => 'HOM05D000691',
	'data_type' => 'gf_id'
)
$sidebar_info = array(
	'gf_id' => 'HOM05D000691',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '827',
	'num_species' => '39'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$gf_genes = array(
	'Ah.01g012340' => 'amhyb',
	'Ah.01g013530' => 'amhyb',
	'Ah.03g143080' => 'amhyb',
	'Ah.06g186750' => 'amhyb',
	'Ah.06g186800' => 'amhyb',
	'Ah.07g200050' => 'amhyb',
	'Ah.08g209110' => 'amhyb',
	'Ah.09g229600' => 'amhyb',
	'Ah.09g229610' => 'amhyb',
	'Ah.10g026490' => 'amhyb',
	'Ah.12g065350' => 'amhyb',
	'Ah.13g069310' => 'amhyb',
	'Ah.14g080130' => 'amhyb',
	'Ah.14g081130' => 'amhyb',
	'Ah.14g081140' => 'amhyb',
	'Ah.16g109160' => 'amhyb',
	'Ah.16g109170' => 'amhyb',
	'Ah.16g109370' => 'amhyb',
	'AL3G47720' => 'aly',
	'ATR0012G060' => 'atr',
	'ATR0026G029' => 'atr',
	'ATR0193G043' => 'atr',
	'ATR0561G076' => 'atr',
	'ATR0561G181' => 'atr',
	'ATR0568G014' => 'atr',
	'ATR0568G114' => 'atr',
	'ATR0620G039' => 'atr',
	'ATR0629G125' => 'atr',
	'ATR0661G583' => 'atr',
	'ATR0686G019' => 'atr',
	'ATR0693G232' => 'atr',
	'ATR0697G104' => 'atr',
	'ATR0789G146' => 'atr',
	'ATR0794G066' => 'atr',
	'ATR1127G127' => 'atr',
	'ATR1131G040' => 'atr',
	'ATR1134G004' => 'atr',
	'ATR1134G095' => 'atr',
	'ATR1152G110' => 'atr',
	'ATR1153G065' => 'atr',
	'Atru.chr3.2296' => 'acertr',
	'AUR62000692' => 'cqu',
	'AUR62001473' => 'cqu',
	'AUR62001812' => 'cqu',
	'AUR62002706' => 'cqu',
	'AUR62003904' => 'cqu',
	'AUR62003905' => 'cqu',
	'AUR62004840' => 'cqu',
	'AUR62005160' => 'cqu',
	'AUR62005604' => 'cqu',
	'AUR62005891' => 'cqu',
	'AUR62007290' => 'cqu',
	'AUR62007502' => 'cqu',
	'AUR62007923' => 'cqu',
	'AUR62009972' => 'cqu',
	'AUR62010488' => 'cqu',
	'AUR62010643' => 'cqu',
	'AUR62012637' => 'cqu',
	'AUR62013492' => 'cqu',
	'AUR62014239' => 'cqu',
	'AUR62014878' => 'cqu',
	'AUR62015857' => 'cqu',
	'AUR62016224' => 'cqu',
	'AUR62017430' => 'cqu',
	'AUR62017467' => 'cqu',
	'AUR62018234' => 'cqu',
	'AUR62019060' => 'cqu',
	'AUR62019607' => 'cqu',
	'AUR62019661' => 'cqu',
	'AUR62022775' => 'cqu',
	'AUR62023603' => 'cqu',
	'AUR62024563' => 'cqu',
	'AUR62026199' => 'cqu',
	'AUR62026905' => 'cqu',
	'AUR62028639' => 'cqu',
	'AUR62029168' => 'cqu',
	'AUR62029551' => 'cqu',
	'AUR62029860' => 'cqu',
	'AUR62030164' => 'cqu',
	'AUR62031208' => 'cqu',
	'AUR62031287' => 'cqu',
	'AUR62031817' => 'cqu',
	'AUR62032126' => 'cqu',
	'AUR62032358' => 'cqu',
	'AUR62032884' => 'cqu',
	'AUR62032892' => 'cqu',
	'AUR62033082' => 'cqu',
	'AUR62033100' => 'cqu',
	'AUR62033255' => 'cqu',
	'AUR62033698' => 'cqu',
	'AUR62033757' => 'cqu',
	'AUR62034760' => 'cqu',
	'AUR62034860' => 'cqu',
	'AUR62035179' => 'cqu',
	'AUR62035881' => 'cqu',
	'AUR62036824' => 'cqu',
	'AUR62036876' => 'cqu',
	'AUR62037319' => 'cqu',
	'AUR62037362' => 'cqu',
	'AUR62037541' => 'cqu',
	'AUR62037853' => 'cqu',
	'AUR62038299' => 'cqu',
	'AUR62038563' => 'cqu',
	'AUR62038564' => 'cqu',
	'AUR62038594' => 'cqu',
	'AUR62038792' => 'cqu',
	'AUR62038947' => 'cqu',
	'AUR62039030' => 'cqu',
	'AUR62039231' => 'cqu',
	'AUR62039452' => 'cqu',
	'AUR62040334' => 'cqu',
	'AUR62040869' => 'cqu',
	'AUR62040870' => 'cqu',
	'AUR62040916' => 'cqu',
	'AUR62041199' => 'cqu',
	'AUR62041334' => 'cqu',
	'AUR62041608' => 'cqu',
	'AUR62041609' => 'cqu',
	'AUR62041833' => 'cqu',
	'AUR62041834' => 'cqu',
	'AUR62042054' => 'cqu',
	'AUR62042134' => 'cqu',
	'AUR62042236' => 'cqu',
	'AUR62042281' => 'cqu',
	'AUR62042593' => 'cqu',
	'AUR62042653' => 'cqu',
	'AUR62043025' => 'cqu',
	'AUR62043026' => 'cqu',
	'AUR62043063' => 'cqu',
	'AUR62043091' => 'cqu',
	'AUR62043320' => 'cqu',
	'BolC5t32558H' => 'bol',
	'CAN.G1036.12' => 'can',
	'CAN.G1432.23' => 'can',
	'CAN.G159.19' => 'can',
	'CAN.G4114.1' => 'can',
	'CAN.G492.85' => 'can',
	'CAN.G500.95' => 'can',
	'CAN.G93.31' => 'can',
	'CiPaw.04G054900' => 'cil',
	'CiPaw.05G045400' => 'cil',
	'CiPaw.15G094100' => 'cil',
	'ClCG00G000700' => 'cla',
	'ClCG00G000780' => 'cla',
	'ClCG01G012280' => 'cla',
	'ClCG02G006140' => 'cla',
	'ClCG02G009810' => 'cla',
	'ClCG03G010170' => 'cla',
	'ClCG03G010260' => 'cla',
	'ClCG04G000770' => 'cla',
	'ClCG05G013980' => 'cla',
	'ClCG06G009110' => 'cla',
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	'Sopen02g022140' => 'spe',
	'Sopen03g010330' => 'spe',
	'Sopen03g013130' => 'spe',
	'Sopen03g013180' => 'spe',
	'Sopen03g013230' => 'spe',
	'Sopen03g014110' => 'spe',
	'Sopen03g015260' => 'spe',
	'Sopen03g015790' => 'spe',
	'Sopen03g018360' => 'spe',
	'Sopen03g024470' => 'spe',
	'Sopen03g026800' => 'spe',
	'Sopen04g003180' => 'spe',
	'Sopen04g008260' => 'spe',
	'Sopen04g010320' => 'spe',
	'Sopen04g011020' => 'spe',
	'Sopen04g011200' => 'spe',
	'Sopen04g011280' => 'spe',
	'Sopen04g021910' => 'spe',
	'Sopen04g023870' => 'spe',
	'Sopen05g009880' => 'spe',
	'Sopen05g011580' => 'spe',
	'Sopen05g012230' => 'spe',
	'Sopen05g012500' => 'spe',
	'Sopen05g012560' => 'spe',
	'Sopen05g012570' => 'spe',
	'Sopen05g012760' => 'spe',
	'Sopen05g013710' => 'spe',
	'Sopen05g015050' => 'spe',
	'Sopen05g026090' => 'spe',
	'Sopen05g028020' => 'spe',
	'Sopen05g028610' => 'spe',
	'Sopen05g029300' => 'spe',
	'Sopen06g005520' => 'spe',
	'Sopen06g006750' => 'spe',
	'Sopen06g008160' => 'spe',
	'Sopen06g009120' => 'spe',
	'Sopen06g013550' => 'spe',
	'Sopen06g015340' => 'spe',
	'Sopen06g018330' => 'spe',
	'Sopen06g021630' => 'spe',
	'Sopen06g021650' => 'spe',
	'Sopen07g006730' => 'spe',
	'Sopen07g008690' => 'spe',
	'Sopen07g008700' => 'spe',
	'Sopen07g008720' => 'spe',
	'Sopen07g008870' => 'spe',
	'Sopen07g009400' => 'spe',
	'Sopen07g009410' => 'spe',
	'Sopen07g009470' => 'spe',
	'Sopen07g009540' => 'spe',
	'Sopen07g011060' => 'spe',
	'Sopen07g011110' => 'spe',
	'Sopen07g011820' => 'spe',
	'Sopen07g013260' => 'spe',
	'Sopen07g014740' => 'spe',
	'Sopen07g015160' => 'spe',
	'Sopen07g015230' => 'spe',
	'Sopen07g016240' => 'spe',
	'Sopen07g017200' => 'spe',
	'Sopen07g017810' => 'spe',
	'Sopen07g019030' => 'spe',
	'Sopen07g020430' => 'spe',
	'Sopen07g021010' => 'spe',
	'Sopen07g021340' => 'spe',
	'Sopen07g022950' => 'spe',
	'Sopen07g027860' => 'spe',
	'Sopen08g007820' => 'spe',
	'Sopen08g009330' => 'spe',
	'Sopen08g012310' => 'spe',
	'Sopen08g012560' => 'spe',
	'Sopen08g014040' => 'spe',
	'Sopen08g014650' => 'spe',
	'Sopen08g017020' => 'spe',
	'Sopen08g018300' => 'spe',
	'Sopen08g020530' => 'spe',
	'Sopen09g008590' => 'spe',
	'Sopen09g008780' => 'spe',
	'Sopen09g011540' => 'spe',
	'Sopen09g011920' => 'spe',
	'Sopen09g014170' => 'spe',
	'Sopen09g016520' => 'spe',
	'Sopen09g021030' => 'spe',
	'Sopen09g023110' => 'spe',
	'Sopen09g024750' => 'spe',
	'Sopen09g025230' => 'spe',
	'Sopen09g025600' => 'spe',
	'Sopen09g034660' => 'spe',
	'Sopen10g006700' => 'spe',
	'Sopen10g009130' => 'spe',
	'Sopen10g009140' => 'spe',
	'Sopen10g009560' => 'spe',
	'Sopen10g010340' => 'spe',
	'Sopen10g011040' => 'spe',
	'Sopen10g013650' => 'spe',
	'Sopen10g014130' => 'spe',
	'Sopen10g014140' => 'spe',
	'Sopen10g014760' => 'spe',
	'Sopen10g015080' => 'spe',
	'Sopen10g015830' => 'spe',
	'Sopen10g018240' => 'spe',
	'Sopen10g018300' => 'spe',
	'Sopen10g018350' => 'spe',
	'Sopen10g018460' => 'spe',
	'Sopen10g018670' => 'spe',
	'Sopen10g019040' => 'spe',
	'Sopen10g019330' => 'spe',
	'Sopen10g019340' => 'spe',
	'Sopen10g019360' => 'spe',
	'Sopen10g019370' => 'spe',
	'Sopen10g020620' => 'spe',
	'Sopen10g021550' => 'spe',
	'Sopen10g022160' => 'spe',
	'Sopen10g023540' => 'spe',
	'Sopen10g023570' => 'spe',
	'Sopen10g023580' => 'spe',
	'Sopen10g023600' => 'spe',
	'Sopen10g023620' => 'spe',
	'Sopen10g023650' => 'spe',
	'Sopen10g024800' => 'spe',
	'Sopen10g026170' => 'spe',
	'Sopen11g007790' => 'spe',
	'Sopen11g010170' => 'spe',
	'Sopen11g010580' => 'spe',
	'Sopen11g013420' => 'spe',
	'Sopen11g016330' => 'spe',
	'Sopen11g017010' => 'spe',
	'Sopen11g018110' => 'spe',
	'Sopen11g018960' => 'spe',
	'Sopen11g019000' => 'spe',
	'Sopen11g019970' => 'spe',
	'Sopen11g020340' => 'spe',
	'Sopen11g020970' => 'spe',
	'Sopen12g008510' => 'spe',
	'Sopen12g008910' => 'spe',
	'Sopen12g009010' => 'spe',
	'Sopen12g009120' => 'spe',
	'Sopen12g009340' => 'spe',
	'Sopen12g009580' => 'spe',
	'Sopen12g010190' => 'spe',
	'Sopen12g010320' => 'spe',
	'Sopen12g010370' => 'spe',
	'Sopen12g012140' => 'spe',
	'Sopen12g012700' => 'spe',
	'Sopen12g013490' => 'spe',
	'Sopen12g014290' => 'spe',
	'Sopen12g015060' => 'spe',
	'Sopen12g015610' => 'spe',
	'Sopen12g018380' => 'spe',
	'Sopen12g019150' => 'spe',
	'Sopen12g020560' => 'spe',
	'Sopen12g023320' => 'spe',
	'Sp3g24190' => 'spa',
	'Sp4g07270' => 'spa',
	'Sp4g07530' => 'spa',
	'Sp4g07670' => 'spa',
	'Sp6g09360' => 'spa',
	'Sp7g04180' => 'spa',
	'Sp7g04980' => 'spa',
	'Sp7g08200' => 'spa',
	'Sp7g09660' => 'spa',
	'SpUn0081_0010' => 'spa',
	'THA.LOC104803417' => 'tha',
	'THA.LOC104817059' => 'tha',
	'Thecc.01G188700' => 'tca',
	'Thecc.05G106700' => 'tca',
	'Thecc.06G068800' => 'tca',
	'Thecc.07G189100' => 'tca',
	'Thecc.09G172800' => 'tca',
	'Thhalv10023044m.g' => 'esa',
	'Thhalv10023881m.g' => 'esa',
	'Thhalv10024067m.g' => 'esa'
)
$gf_id = 'HOM05D000691'
$gf_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$gf_types_configuration = array(
	'HOMFAM' => array(
		'order' => '1',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	),
	'ORTHOFAM' => array(
		'order' => '2',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	)
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$allow_async_use = true
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D000691'
)
$data_identifier = 'HOM05D000691'
$data_type = 'gf_id'
$species_gene_counts = array(
	'amhyb' => (int) 18,
	'aly' => (int) 1,
	'atr' => (int) 21,
	'acertr' => (int) 1,
	'cqu' => (int) 90,
	'bol' => (int) 1,
	'can' => (int) 7,
	'cil' => (int) 3,
	'cla' => (int) 15,
	'col' => (int) 1,
	'cpa' => (int) 2,
	'csa' => (int) 7,
	'camsi' => (int) 10,
	'din' => (int) 1,
	'dzi' => (int) 2,
	'bvu' => (int) 18,
	'fve' => (int) 22,
	'gra' => (int) 1,
	'han' => (int) 7,
	'hma' => (int) 9,
	'sun' => (int) 16,
	'lonja' => (int) 46,
	'mes' => (int) 8,
	'mbi' => (int) 2,
	'cme' => (int) 6,
	'oeu' => (int) 110,
	'stu' => (int) 45,
	'ptr' => (int) 1,
	'rch' => (int) 1,
	'sci' => (int) 1,
	'sgi' => (int) 31,
	'sas' => (int) 1,
	'shi' => (int) 89,
	'sly' => (int) 2,
	'spe' => (int) 211,
	'spa' => (int) 10,
	'tha' => (int) 2,
	'tca' => (int) 5,
	'esa' => (int) 3
)
$gf_gene_species = 'esa'
$gf_gene_id = 'Thhalv10024067m.g'
$species_info = array(
	'species' => 'cme',
	'common_name' => 'Cucumis melo',
	'tax_id' => '3656',
	'version' => 'Melonomics v3.6.1'
)
$local_species = 'cme'
$disabled = ''
$selected = ''
$num_hits = (int) 0
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Analysis/custom_tree_creation.ctp, line 27
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933

Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]
Code Context
        $disabled    = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";

        $selected    = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";

        $num_hits    = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D000691',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '827',
		'num_species' => '39'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'gf_genes' => array(
		'Ah.01g012340' => 'amhyb',
		'Ah.01g013530' => 'amhyb',
		'Ah.03g143080' => 'amhyb',
		'Ah.06g186750' => 'amhyb',
		'Ah.06g186800' => 'amhyb',
		'Ah.07g200050' => 'amhyb',
		'Ah.08g209110' => 'amhyb',
		'Ah.09g229600' => 'amhyb',
		'Ah.09g229610' => 'amhyb',
		'Ah.10g026490' => 'amhyb',
		'Ah.12g065350' => 'amhyb',
		'Ah.13g069310' => 'amhyb',
		'Ah.14g080130' => 'amhyb',
		'Ah.14g081130' => 'amhyb',
		'Ah.14g081140' => 'amhyb',
		'Ah.16g109160' => 'amhyb',
		'Ah.16g109170' => 'amhyb',
		'Ah.16g109370' => 'amhyb',
		'AL3G47720' => 'aly',
		'ATR0012G060' => 'atr',
		'ATR0026G029' => 'atr',
		'ATR0193G043' => 'atr',
		'ATR0561G076' => 'atr',
		'ATR0561G181' => 'atr',
		'ATR0568G014' => 'atr',
		'ATR0568G114' => 'atr',
		'ATR0620G039' => 'atr',
		'ATR0629G125' => 'atr',
		'ATR0661G583' => 'atr',
		'ATR0686G019' => 'atr',
		'ATR0693G232' => 'atr',
		'ATR0697G104' => 'atr',
		'ATR0789G146' => 'atr',
		'ATR0794G066' => 'atr',
		'ATR1127G127' => 'atr',
		'ATR1131G040' => 'atr',
		'ATR1134G004' => 'atr',
		'ATR1134G095' => 'atr',
		'ATR1152G110' => 'atr',
		'ATR1153G065' => 'atr',
		'Atru.chr3.2296' => 'acertr',
		'AUR62000692' => 'cqu',
		'AUR62001473' => 'cqu',
		'AUR62001812' => 'cqu',
		'AUR62002706' => 'cqu',
		'AUR62003904' => 'cqu',
		'AUR62003905' => 'cqu',
		'AUR62004840' => 'cqu',
		'AUR62005160' => 'cqu',
		'AUR62005604' => 'cqu',
		'AUR62005891' => 'cqu',
		'AUR62007290' => 'cqu',
		'AUR62007502' => 'cqu',
		'AUR62007923' => 'cqu',
		'AUR62009972' => 'cqu',
		'AUR62010488' => 'cqu',
		'AUR62010643' => 'cqu',
		'AUR62012637' => 'cqu',
		'AUR62013492' => 'cqu',
		'AUR62014239' => 'cqu',
		'AUR62014878' => 'cqu',
		'AUR62015857' => 'cqu',
		'AUR62016224' => 'cqu',
		'AUR62017430' => 'cqu',
		'AUR62017467' => 'cqu',
		'AUR62018234' => 'cqu',
		'AUR62019060' => 'cqu',
		'AUR62019607' => 'cqu',
		'AUR62019661' => 'cqu',
		'AUR62022775' => 'cqu',
		'AUR62023603' => 'cqu',
		'AUR62024563' => 'cqu',
		'AUR62026199' => 'cqu',
		'AUR62026905' => 'cqu',
		'AUR62028639' => 'cqu',
		'AUR62029168' => 'cqu',
		'AUR62029551' => 'cqu',
		'AUR62029860' => 'cqu',
		'AUR62030164' => 'cqu',
		'AUR62031208' => 'cqu',
		'AUR62031287' => 'cqu',
		'AUR62031817' => 'cqu',
		'AUR62032126' => 'cqu',
		'AUR62032358' => 'cqu',
		'AUR62032884' => 'cqu',
		'AUR62032892' => 'cqu',
		'AUR62033082' => 'cqu',
		'AUR62033100' => 'cqu',
		'AUR62033255' => 'cqu',
		'AUR62033698' => 'cqu',
		'AUR62033757' => 'cqu',
		'AUR62034760' => 'cqu',
		'AUR62034860' => 'cqu',
		'AUR62035179' => 'cqu',
		'AUR62035881' => 'cqu',
		'AUR62036824' => 'cqu',
		'AUR62036876' => 'cqu',
		'AUR62037319' => 'cqu',
		'AUR62037362' => 'cqu',
		'AUR62037541' => 'cqu',
		'AUR62037853' => 'cqu',
		'AUR62038299' => 'cqu',
		'AUR62038563' => 'cqu',
		'AUR62038564' => 'cqu',
		'AUR62038594' => 'cqu',
		'AUR62038792' => 'cqu',
		'AUR62038947' => 'cqu',
		'AUR62039030' => 'cqu',
		'AUR62039231' => 'cqu',
		'AUR62039452' => 'cqu',
		'AUR62040334' => 'cqu',
		'AUR62040869' => 'cqu',
		'AUR62040870' => 'cqu',
		'AUR62040916' => 'cqu',
		'AUR62041199' => 'cqu',
		'AUR62041334' => 'cqu',
		'AUR62041608' => 'cqu',
		'AUR62041609' => 'cqu',
		'AUR62041833' => 'cqu',
		'AUR62041834' => 'cqu',
		'AUR62042054' => 'cqu',
		'AUR62042134' => 'cqu',
		'AUR62042236' => 'cqu',
		'AUR62042281' => 'cqu',
		'AUR62042593' => 'cqu',
		'AUR62042653' => 'cqu',
		'AUR62043025' => 'cqu',
		'AUR62043026' => 'cqu',
		'AUR62043063' => 'cqu',
		'AUR62043091' => 'cqu',
		'AUR62043320' => 'cqu',
		'BolC5t32558H' => 'bol',
		'CAN.G1036.12' => 'can',
		'CAN.G1432.23' => 'can',
		'CAN.G159.19' => 'can',
		'CAN.G4114.1' => 'can',
		'CAN.G492.85' => 'can',
		'CAN.G500.95' => 'can',
		'CAN.G93.31' => 'can',
		'CiPaw.04G054900' => 'cil',
		'CiPaw.05G045400' => 'cil',
		'CiPaw.15G094100' => 'cil',
		'ClCG00G000700' => 'cla',
		'ClCG00G000780' => 'cla',
		'ClCG01G012280' => 'cla',
		'ClCG02G006140' => 'cla',
		'ClCG02G009810' => 'cla',
		'ClCG03G010170' => 'cla',
		'ClCG03G010260' => 'cla',
		'ClCG04G000770' => 'cla',
		'ClCG05G013980' => 'cla',
		'ClCG06G009110' => 'cla',
		'ClCG06G009120' => 'cla',
		'ClCG08G002190' => 'cla',
		'ClCG09G013830' => 'cla',
		'ClCG10G006760' => 'cla',
		'ClCG11G007310' => 'cla',
		'COL.COLO4_16141' => 'col',
		'Cpa.g.sc202.2' => 'cpa',
		'Cpa.g.sc76.18' => 'cpa',
		'CsaV3_1G031080' => 'csa',
		'CsaV3_4G011870' => 'csa',
		'CsaV3_4G014860' => 'csa',
		'CsaV3_4G021860' => 'csa',
		'CsaV3_6G009880' => 'csa',
		'CsaV3_7G021240' => 'csa',
		'CsaV3_UNG240600' => 'csa',
		'CSS0003516' => 'camsi',
		'CSS0013023' => 'camsi',
		'CSS0017680' => 'camsi',
		'CSS0018551' => 'camsi',
		'CSS0026792' => 'camsi',
		'CSS0028271' => 'camsi',
		'CSS0033603' => 'camsi',
		'CSS0040789' => 'camsi',
		'CSS0045068' => 'camsi',
		'CSS0045803' => 'camsi',
		'Dinv10528' => 'din',
		'Duzib116G0875' => 'dzi',
		'Duzib128G0055' => 'dzi',
		'EL10Ac1g02377' => 'bvu',
		'EL10Ac1g02378' => 'bvu',
		'EL10Ac2g03486' => 'bvu',
		'EL10Ac2g03487' => 'bvu',
		'EL10Ac3g05722' => 'bvu',
		'EL10Ac3g06186' => 'bvu',
		'EL10Ac5g11258' => 'bvu',
		'EL10Ac6g13831' => 'bvu',
		'EL10Ac6g14162' => 'bvu',
		'EL10Ac6g14316' => 'bvu',
		'EL10Ac6g14317' => 'bvu',
		'EL10Ac6g14588' => 'bvu',
		'EL10Ac7g16302' => 'bvu',
		'EL10Ac7g16543' => 'bvu',
		'EL10Ac8g18762' => 'bvu',
		'EL10Ac9g20847' => 'bvu',
		'EL10As7g23731' => 'bvu',
		'EL10As7g23732' => 'bvu',
		'FvH4_1g23713' => 'fve',
		'FvH4_2g00261' => 'fve',
		'FvH4_2g00262' => 'fve',
		'FvH4_2g15681' => 'fve',
		'FvH4_2g17851' => 'fve',
		'FvH4_3g10531' => 'fve',
		'FvH4_3g33536' => 'fve',
		'FvH4_4g03471' => 'fve',
		'FvH4_4g19351' => 'fve',
		'FvH4_4g34281' => 'fve',
		'FvH4_5g03811' => 'fve',
		'FvH4_5g03812' => 'fve',
		'FvH4_5g11822' => 'fve',
		'FvH4_5g31701' => 'fve',
		'FvH4_6g12161' => 'fve',
		'FvH4_6g15222' => 'fve',
		'FvH4_6g15223' => 'fve',
		'FvH4_6g19301' => 'fve',
		'FvH4_6g33011' => 'fve',
		'FvH4_6g50161' => 'fve',
		'FvH4_7g04123' => 'fve',
		'FvH4_c7g00010' => 'fve',
		'Gorai.012G165300' => 'gra',
		'HanXRQChr00c0452g0574871' => 'han',
		'HanXRQChr01g0029471' => 'han',
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		'Sopen07g009410' => 'spe',
		'Sopen07g009470' => 'spe',
		'Sopen07g009540' => 'spe',
		'Sopen07g011060' => 'spe',
		'Sopen07g011110' => 'spe',
		'Sopen07g011820' => 'spe',
		'Sopen07g013260' => 'spe',
		'Sopen07g014740' => 'spe',
		'Sopen07g015160' => 'spe',
		'Sopen07g015230' => 'spe',
		'Sopen07g016240' => 'spe',
		'Sopen07g017200' => 'spe',
		'Sopen07g017810' => 'spe',
		'Sopen07g019030' => 'spe',
		'Sopen07g020430' => 'spe',
		'Sopen07g021010' => 'spe',
		'Sopen07g021340' => 'spe',
		'Sopen07g022950' => 'spe',
		'Sopen07g027860' => 'spe',
		'Sopen08g007820' => 'spe',
		'Sopen08g009330' => 'spe',
		'Sopen08g012310' => 'spe',
		'Sopen08g012560' => 'spe',
		'Sopen08g014040' => 'spe',
		'Sopen08g014650' => 'spe',
		'Sopen08g017020' => 'spe',
		'Sopen08g018300' => 'spe',
		'Sopen08g020530' => 'spe',
		'Sopen09g008590' => 'spe',
		'Sopen09g008780' => 'spe',
		'Sopen09g011540' => 'spe',
		'Sopen09g011920' => 'spe',
		'Sopen09g014170' => 'spe',
		'Sopen09g016520' => 'spe',
		'Sopen09g021030' => 'spe',
		'Sopen09g023110' => 'spe',
		'Sopen09g024750' => 'spe',
		'Sopen09g025230' => 'spe',
		'Sopen09g025600' => 'spe',
		'Sopen09g034660' => 'spe',
		'Sopen10g006700' => 'spe',
		'Sopen10g009130' => 'spe',
		'Sopen10g009140' => 'spe',
		'Sopen10g009560' => 'spe',
		'Sopen10g010340' => 'spe',
		'Sopen10g011040' => 'spe',
		'Sopen10g013650' => 'spe',
		'Sopen10g014130' => 'spe',
		'Sopen10g014140' => 'spe',
		'Sopen10g014760' => 'spe',
		'Sopen10g015080' => 'spe',
		'Sopen10g015830' => 'spe',
		'Sopen10g018240' => 'spe',
		'Sopen10g018300' => 'spe',
		'Sopen10g018350' => 'spe',
		'Sopen10g018460' => 'spe',
		'Sopen10g018670' => 'spe',
		'Sopen10g019040' => 'spe',
		'Sopen10g019330' => 'spe',
		'Sopen10g019340' => 'spe',
		'Sopen10g019360' => 'spe',
		'Sopen10g019370' => 'spe',
		'Sopen10g020620' => 'spe',
		'Sopen10g021550' => 'spe',
		'Sopen10g022160' => 'spe',
		'Sopen10g023540' => 'spe',
		'Sopen10g023570' => 'spe',
		'Sopen10g023580' => 'spe',
		'Sopen10g023600' => 'spe',
		'Sopen10g023620' => 'spe',
		'Sopen10g023650' => 'spe',
		'Sopen10g024800' => 'spe',
		'Sopen10g026170' => 'spe',
		'Sopen11g007790' => 'spe',
		'Sopen11g010170' => 'spe',
		'Sopen11g010580' => 'spe',
		'Sopen11g013420' => 'spe',
		'Sopen11g016330' => 'spe',
		'Sopen11g017010' => 'spe',
		'Sopen11g018110' => 'spe',
		'Sopen11g018960' => 'spe',
		'Sopen11g019000' => 'spe',
		'Sopen11g019970' => 'spe',
		'Sopen11g020340' => 'spe',
		'Sopen11g020970' => 'spe',
		'Sopen12g008510' => 'spe',
		'Sopen12g008910' => 'spe',
		'Sopen12g009010' => 'spe',
		'Sopen12g009120' => 'spe',
		'Sopen12g009340' => 'spe',
		'Sopen12g009580' => 'spe',
		'Sopen12g010190' => 'spe',
		'Sopen12g010320' => 'spe',
		'Sopen12g010370' => 'spe',
		'Sopen12g012140' => 'spe',
		'Sopen12g012700' => 'spe',
		'Sopen12g013490' => 'spe',
		'Sopen12g014290' => 'spe',
		'Sopen12g015060' => 'spe',
		'Sopen12g015610' => 'spe',
		'Sopen12g018380' => 'spe',
		'Sopen12g019150' => 'spe',
		'Sopen12g020560' => 'spe',
		'Sopen12g023320' => 'spe',
		'Sp3g24190' => 'spa',
		'Sp4g07270' => 'spa',
		'Sp4g07530' => 'spa',
		'Sp4g07670' => 'spa',
		'Sp6g09360' => 'spa',
		'Sp7g04180' => 'spa',
		'Sp7g04980' => 'spa',
		'Sp7g08200' => 'spa',
		'Sp7g09660' => 'spa',
		'SpUn0081_0010' => 'spa',
		'THA.LOC104803417' => 'tha',
		'THA.LOC104817059' => 'tha',
		'Thecc.01G188700' => 'tca',
		'Thecc.05G106700' => 'tca',
		'Thecc.06G068800' => 'tca',
		'Thecc.07G189100' => 'tca',
		'Thecc.09G172800' => 'tca',
		'Thhalv10023044m.g' => 'esa',
		'Thhalv10023881m.g' => 'esa',
		'Thhalv10024067m.g' => 'esa'
	),
	'gf_id' => 'HOM05D000691',
	'gf_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'gf_types_configuration' => array(
		'HOMFAM' => array(
			'order' => '1',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		),
		'ORTHOFAM' => array(
			'order' => '2',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		)
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'allow_async_use' => true,
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D000691'
	),
	'data_identifier' => 'HOM05D000691',
	'data_type' => 'gf_id'
)
$sidebar_info = array(
	'gf_id' => 'HOM05D000691',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '827',
	'num_species' => '39'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$gf_genes = array(
	'Ah.01g012340' => 'amhyb',
	'Ah.01g013530' => 'amhyb',
	'Ah.03g143080' => 'amhyb',
	'Ah.06g186750' => 'amhyb',
	'Ah.06g186800' => 'amhyb',
	'Ah.07g200050' => 'amhyb',
	'Ah.08g209110' => 'amhyb',
	'Ah.09g229600' => 'amhyb',
	'Ah.09g229610' => 'amhyb',
	'Ah.10g026490' => 'amhyb',
	'Ah.12g065350' => 'amhyb',
	'Ah.13g069310' => 'amhyb',
	'Ah.14g080130' => 'amhyb',
	'Ah.14g081130' => 'amhyb',
	'Ah.14g081140' => 'amhyb',
	'Ah.16g109160' => 'amhyb',
	'Ah.16g109170' => 'amhyb',
	'Ah.16g109370' => 'amhyb',
	'AL3G47720' => 'aly',
	'ATR0012G060' => 'atr',
	'ATR0026G029' => 'atr',
	'ATR0193G043' => 'atr',
	'ATR0561G076' => 'atr',
	'ATR0561G181' => 'atr',
	'ATR0568G014' => 'atr',
	'ATR0568G114' => 'atr',
	'ATR0620G039' => 'atr',
	'ATR0629G125' => 'atr',
	'ATR0661G583' => 'atr',
	'ATR0686G019' => 'atr',
	'ATR0693G232' => 'atr',
	'ATR0697G104' => 'atr',
	'ATR0789G146' => 'atr',
	'ATR0794G066' => 'atr',
	'ATR1127G127' => 'atr',
	'ATR1131G040' => 'atr',
	'ATR1134G004' => 'atr',
	'ATR1134G095' => 'atr',
	'ATR1152G110' => 'atr',
	'ATR1153G065' => 'atr',
	'Atru.chr3.2296' => 'acertr',
	'AUR62000692' => 'cqu',
	'AUR62001473' => 'cqu',
	'AUR62001812' => 'cqu',
	'AUR62002706' => 'cqu',
	'AUR62003904' => 'cqu',
	'AUR62003905' => 'cqu',
	'AUR62004840' => 'cqu',
	'AUR62005160' => 'cqu',
	'AUR62005604' => 'cqu',
	'AUR62005891' => 'cqu',
	'AUR62007290' => 'cqu',
	'AUR62007502' => 'cqu',
	'AUR62007923' => 'cqu',
	'AUR62009972' => 'cqu',
	'AUR62010488' => 'cqu',
	'AUR62010643' => 'cqu',
	'AUR62012637' => 'cqu',
	'AUR62013492' => 'cqu',
	'AUR62014239' => 'cqu',
	'AUR62014878' => 'cqu',
	'AUR62015857' => 'cqu',
	'AUR62016224' => 'cqu',
	'AUR62017430' => 'cqu',
	'AUR62017467' => 'cqu',
	'AUR62018234' => 'cqu',
	'AUR62019060' => 'cqu',
	'AUR62019607' => 'cqu',
	'AUR62019661' => 'cqu',
	'AUR62022775' => 'cqu',
	'AUR62023603' => 'cqu',
	'AUR62024563' => 'cqu',
	'AUR62026199' => 'cqu',
	'AUR62026905' => 'cqu',
	'AUR62028639' => 'cqu',
	'AUR62029168' => 'cqu',
	'AUR62029551' => 'cqu',
	'AUR62029860' => 'cqu',
	'AUR62030164' => 'cqu',
	'AUR62031208' => 'cqu',
	'AUR62031287' => 'cqu',
	'AUR62031817' => 'cqu',
	'AUR62032126' => 'cqu',
	'AUR62032358' => 'cqu',
	'AUR62032884' => 'cqu',
	'AUR62032892' => 'cqu',
	'AUR62033082' => 'cqu',
	'AUR62033100' => 'cqu',
	'AUR62033255' => 'cqu',
	'AUR62033698' => 'cqu',
	'AUR62033757' => 'cqu',
	'AUR62034760' => 'cqu',
	'AUR62034860' => 'cqu',
	'AUR62035179' => 'cqu',
	'AUR62035881' => 'cqu',
	'AUR62036824' => 'cqu',
	'AUR62036876' => 'cqu',
	'AUR62037319' => 'cqu',
	'AUR62037362' => 'cqu',
	'AUR62037541' => 'cqu',
	'AUR62037853' => 'cqu',
	'AUR62038299' => 'cqu',
	'AUR62038563' => 'cqu',
	'AUR62038564' => 'cqu',
	'AUR62038594' => 'cqu',
	'AUR62038792' => 'cqu',
	'AUR62038947' => 'cqu',
	'AUR62039030' => 'cqu',
	'AUR62039231' => 'cqu',
	'AUR62039452' => 'cqu',
	'AUR62040334' => 'cqu',
	'AUR62040869' => 'cqu',
	'AUR62040870' => 'cqu',
	'AUR62040916' => 'cqu',
	'AUR62041199' => 'cqu',
	'AUR62041334' => 'cqu',
	'AUR62041608' => 'cqu',
	'AUR62041609' => 'cqu',
	'AUR62041833' => 'cqu',
	'AUR62041834' => 'cqu',
	'AUR62042054' => 'cqu',
	'AUR62042134' => 'cqu',
	'AUR62042236' => 'cqu',
	'AUR62042281' => 'cqu',
	'AUR62042593' => 'cqu',
	'AUR62042653' => 'cqu',
	'AUR62043025' => 'cqu',
	'AUR62043026' => 'cqu',
	'AUR62043063' => 'cqu',
	'AUR62043091' => 'cqu',
	'AUR62043320' => 'cqu',
	'BolC5t32558H' => 'bol',
	'CAN.G1036.12' => 'can',
	'CAN.G1432.23' => 'can',
	'CAN.G159.19' => 'can',
	'CAN.G4114.1' => 'can',
	'CAN.G492.85' => 'can',
	'CAN.G500.95' => 'can',
	'CAN.G93.31' => 'can',
	'CiPaw.04G054900' => 'cil',
	'CiPaw.05G045400' => 'cil',
	'CiPaw.15G094100' => 'cil',
	'ClCG00G000700' => 'cla',
	'ClCG00G000780' => 'cla',
	'ClCG01G012280' => 'cla',
	'ClCG02G006140' => 'cla',
	'ClCG02G009810' => 'cla',
	'ClCG03G010170' => 'cla',
	'ClCG03G010260' => 'cla',
	'ClCG04G000770' => 'cla',
	'ClCG05G013980' => 'cla',
	'ClCG06G009110' => 'cla',
	'ClCG06G009120' => 'cla',
	'ClCG08G002190' => 'cla',
	'ClCG09G013830' => 'cla',
	'ClCG10G006760' => 'cla',
	'ClCG11G007310' => 'cla',
	'COL.COLO4_16141' => 'col',
	'Cpa.g.sc202.2' => 'cpa',
	'Cpa.g.sc76.18' => 'cpa',
	'CsaV3_1G031080' => 'csa',
	'CsaV3_4G011870' => 'csa',
	'CsaV3_4G014860' => 'csa',
	'CsaV3_4G021860' => 'csa',
	'CsaV3_6G009880' => 'csa',
	'CsaV3_7G021240' => 'csa',
	'CsaV3_UNG240600' => 'csa',
	'CSS0003516' => 'camsi',
	'CSS0013023' => 'camsi',
	'CSS0017680' => 'camsi',
	'CSS0018551' => 'camsi',
	'CSS0026792' => 'camsi',
	'CSS0028271' => 'camsi',
	'CSS0033603' => 'camsi',
	'CSS0040789' => 'camsi',
	'CSS0045068' => 'camsi',
	'CSS0045803' => 'camsi',
	'Dinv10528' => 'din',
	'Duzib116G0875' => 'dzi',
	'Duzib128G0055' => 'dzi',
	'EL10Ac1g02377' => 'bvu',
	'EL10Ac1g02378' => 'bvu',
	'EL10Ac2g03486' => 'bvu',
	'EL10Ac2g03487' => 'bvu',
	'EL10Ac3g05722' => 'bvu',
	'EL10Ac3g06186' => 'bvu',
	'EL10Ac5g11258' => 'bvu',
	'EL10Ac6g13831' => 'bvu',
	'EL10Ac6g14162' => 'bvu',
	'EL10Ac6g14316' => 'bvu',
	'EL10Ac6g14317' => 'bvu',
	'EL10Ac6g14588' => 'bvu',
	'EL10Ac7g16302' => 'bvu',
	'EL10Ac7g16543' => 'bvu',
	'EL10Ac8g18762' => 'bvu',
	'EL10Ac9g20847' => 'bvu',
	'EL10As7g23731' => 'bvu',
	'EL10As7g23732' => 'bvu',
	'FvH4_1g23713' => 'fve',
	'FvH4_2g00261' => 'fve',
	'FvH4_2g00262' => 'fve',
	'FvH4_2g15681' => 'fve',
	'FvH4_2g17851' => 'fve',
	'FvH4_3g10531' => 'fve',
	'FvH4_3g33536' => 'fve',
	'FvH4_4g03471' => 'fve',
	'FvH4_4g19351' => 'fve',
	'FvH4_4g34281' => 'fve',
	'FvH4_5g03811' => 'fve',
	'FvH4_5g03812' => 'fve',
	'FvH4_5g11822' => 'fve',
	'FvH4_5g31701' => 'fve',
	'FvH4_6g12161' => 'fve',
	'FvH4_6g15222' => 'fve',
	'FvH4_6g15223' => 'fve',
	'FvH4_6g19301' => 'fve',
	'FvH4_6g33011' => 'fve',
	'FvH4_6g50161' => 'fve',
	'FvH4_7g04123' => 'fve',
	'FvH4_c7g00010' => 'fve',
	'Gorai.012G165300' => 'gra',
	'HanXRQChr00c0452g0574871' => 'han',
	'HanXRQChr01g0029471' => 'han',
	'HanXRQChr05g0133501' => 'han',
	'HanXRQChr10g0280141' => 'han',
	'HanXRQChr10g0280631' => 'han',
	'HanXRQChr13g0409991' => 'han',
	'HanXRQChr15g0468361' => 'han',
	'Hma1.2p1_0021F.1_g014270' => 'hma',
	'Hma1.2p1_0026F.1_g016730' => 'hma',
	'Hma1.2p1_0177F.1_g077930' => 'hma',
	'Hma1.2p1_0370F.1_g137540' => 'hma',
	'Hma1.2p1_0637F.1_g193600' => 'hma',
	'Hma1.2p1_1045F.1_g251360' => 'hma',
	'Hma1.2p1_1168F.1_g263120' => 'hma',
	'Hma1.2p1_1640F.1_g295040' => 'hma',
	'Hma1.2p1_2467F.1_g322660' => 'hma',
	'Hund01785' => 'sun',
	'Hund04739' => 'sun',
	'Hund07717' => 'sun',
	'Hund08060' => 'sun',
	'Hund08734' => 'sun',
	'Hund10876' => 'sun',
	'Hund14991' => 'sun',
	'Hund15051' => 'sun',
	'Hund15082' => 'sun',
	'Hund17998' => 'sun',
	'Hund18526' => 'sun',
	'Hund19828' => 'sun',
	'Hund23384' => 'sun',
	'Hund26399' => 'sun',
	'Hund28766' => 'sun',
	'Hund28768' => 'sun',
	'Lj1A487G33' => 'lonja',
	'Lj1A487G34' => 'lonja',
	'Lj1A489G15' => 'lonja',
	'Lj1C1113T3' => 'lonja',
	'Lj1C3T4' => 'lonja',
	'Lj1C763G4' => 'lonja',
	'Lj1P195T27' => 'lonja',
	'Lj1P573T13' => 'lonja',
	'Lj1P895T45' => 'lonja',
	'Lj1P995G28' => 'lonja',
	'Lj2A1125G46' => 'lonja',
	'Lj2C116T7' => 'lonja',
	'Lj2P295T30' => 'lonja',
	'Lj2P476T23' => 'lonja',
	'Lj2P603T27' => 'lonja',
	'Lj2P609T17' => 'lonja',
	'Lj2P727T24' => 'lonja',
	'Lj3C273T2' => 'lonja',
	'Lj3C644G3' => 'lonja',
	'Lj3C644G4' => 'lonja',
	'Lj3P463T4' => 'lonja',
	'Lj3P545T31' => 'lonja',
	'Lj3P820T55' => 'lonja',
	'Lj4C260T12' => 'lonja',
	'Lj4C714G8' => 'lonja',
	'Lj4P131T14' => 'lonja',
	'Lj4P131T15' => 'lonja',
	'Lj5C102G24' => 'lonja',
	'Lj5P491T3' => 'lonja',
	'Lj5P564T12' => 'lonja',
	'Lj5P786T11' => 'lonja',
	'Lj6C97T3' => 'lonja',
	'Lj8P523T19' => 'lonja',
	'Lj9A24G30' => 'lonja',
	'Lj9A424G33' => 'lonja',
	'Lj9C219G10' => 'lonja',
	'Lj9P219T12' => 'lonja',
	'Lj9P705T22' => 'lonja',
	'Lju114C4T7' => 'lonja',
	'Lju1220C5G5' => 'lonja',
	'Lju2092C1G1' => 'lonja',
	'Lju2092C1T0' => 'lonja',
	'Lju225C6G6' => 'lonja',
	'Lju427C2T0' => 'lonja',
	'Lju50C9T4' => 'lonja',
	'Lju926C12T2' => 'lonja',
	'Manes.06G126602' => 'mes',
	'Manes.13G002614' => 'mes',
	'Manes.15G192966' => 'mes',
	'Manes.17G001483' => 'mes',
	'Manes.17G022547' => 'mes',
	'Manes.18G042825' => 'mes',
	'Manes.S026816' => 'mes',
	'Manes.S027416' => 'mes',
	'MBI02_g15234_MAGBIO' => 'mbi',
	'MBI16_g35584_MAGBIO' => 'mbi',
	'MELO3C008948.2' => 'cme',
	'MELO3C010395.2' => 'cme',
	'MELO3C010396.2' => 'cme',
	'MELO3C015759.2' => 'cme',
	'MELO3C022607.2' => 'cme',
	'MELO3C028897.2' => 'cme',
	'Oeu000188.1' => 'oeu',
	'Oeu002226.1' => 'oeu',
	'Oeu003087.1' => 'oeu',
	'Oeu003392.1' => 'oeu',
	'Oeu003523.1' => 'oeu',
	'Oeu003524.1' => 'oeu',
	'Oeu003528.1' => 'oeu',
	'Oeu003547.2' => 'oeu',
	'Oeu004677.1' => 'oeu',
	'Oeu005362.1' => 'oeu',
	'Oeu005833.1' => 'oeu',
	'Oeu005834.1' => 'oeu',
	'Oeu006751.1' => 'oeu',
	'Oeu007084.1' => 'oeu',
	'Oeu007264.1' => 'oeu',
	'Oeu008153.1' => 'oeu',
	'Oeu008228.1' => 'oeu',
	'Oeu008229.1' => 'oeu',
	'Oeu009580.1' => 'oeu',
	'Oeu010110.1' => 'oeu',
	'Oeu011704.1' => 'oeu',
	'Oeu011912.1' => 'oeu',
	'Oeu012057.1' => 'oeu',
	'Oeu012157.1' => 'oeu',
	'Oeu013775.1' => 'oeu',
	'Oeu013806.1' => 'oeu',
	'Oeu016457.1' => 'oeu',
	'Oeu016803.1' => 'oeu',
	'Oeu017243.2' => 'oeu',
	'Oeu017935.1' => 'oeu',
	'Oeu020246.2' => 'oeu',
	'Oeu020990.1' => 'oeu',
	'Oeu021941.1' => 'oeu',
	'Oeu021986.1' => 'oeu',
	'Oeu023578.1' => 'oeu',
	'Oeu024242.1' => 'oeu',
	'Oeu025087.1' => 'oeu',
	'Oeu025093.1' => 'oeu',
	'Oeu025412.1' => 'oeu',
	'Oeu025520.1' => 'oeu',
	'Oeu026473.1' => 'oeu',
	'Oeu027505.1' => 'oeu',
	'Oeu027530.1' => 'oeu',
	'Oeu027794.2' => 'oeu',
	'Oeu028951.1' => 'oeu',
	'Oeu029141.1' => 'oeu',
	'Oeu029231.4' => 'oeu',
	'Oeu029388.1' => 'oeu',
	'Oeu029673.1' => 'oeu',
	'Oeu029674.1' => 'oeu',
	'Oeu029748.1' => 'oeu',
	'Oeu030224.1' => 'oeu',
	'Oeu030243.1' => 'oeu',
	'Oeu030253.1' => 'oeu',
	'Oeu030414.1' => 'oeu',
	'Oeu030415.1' => 'oeu',
	'Oeu030472.1' => 'oeu',
	'Oeu031432.1' => 'oeu',
	'Oeu031697.1' => 'oeu',
	'Oeu032030.1' => 'oeu',
	'Oeu032031.1' => 'oeu',
	'Oeu032075.1' => 'oeu',
	'Oeu032737.1' => 'oeu',
	'Oeu033407.1' => 'oeu',
	'Oeu033485.1' => 'oeu',
	'Oeu034465.1' => 'oeu',
	'Oeu034951.1' => 'oeu',
	'Oeu036281.1' => 'oeu',
	'Oeu036931.1' => 'oeu',
	'Oeu036932.1' => 'oeu',
	'Oeu037340.1' => 'oeu',
	'Oeu037611.1' => 'oeu',
	'Oeu039205.1' => 'oeu',
	'Oeu039325.1' => 'oeu',
	'Oeu040999.1' => 'oeu',
	'Oeu041244.1' => 'oeu',
	'Oeu041682.1' => 'oeu',
	'Oeu041863.1' => 'oeu',
	'Oeu042345.1' => 'oeu',
	'Oeu042346.1' => 'oeu',
	'Oeu042671.1' => 'oeu',
	'Oeu043273.1' => 'oeu',
	'Oeu043573.1' => 'oeu',
	'Oeu044071.1' => 'oeu',
	'Oeu046813.1' => 'oeu',
	'Oeu048160.1' => 'oeu',
	'Oeu048162.1' => 'oeu',
	'Oeu048282.1' => 'oeu',
	'Oeu048297.1' => 'oeu',
	'Oeu048360.1' => 'oeu',
	'Oeu048565.1' => 'oeu',
	'Oeu049268.1' => 'oeu',
	'Oeu049465.1' => 'oeu',
	'Oeu049978.1' => 'oeu',
	'Oeu050628.1' => 'oeu',
	'Oeu050727.1' => 'oeu',
	'Oeu052065.1' => 'oeu',
	'Oeu052582.1' => 'oeu',
	'Oeu053090.1' => 'oeu',
	'Oeu053644.1' => 'oeu',
	'Oeu053713.1' => 'oeu',
	'Oeu055027.1' => 'oeu',
	'Oeu057741.1' => 'oeu',
	'Oeu058973.1' => 'oeu',
	'Oeu060366.1' => 'oeu',
	'Oeu061428.1' => 'oeu',
	'Oeu062087.1' => 'oeu',
	'Oeu062537.1' => 'oeu',
	'Oeu062538.1' => 'oeu',
	'Oeu064387.1' => 'oeu',
	'PGSC0003DMG400002344' => 'stu',
	'PGSC0003DMG400004046' => 'stu',
	'PGSC0003DMG400006418' => 'stu',
	'PGSC0003DMG400008410' => 'stu',
	'PGSC0003DMG400008620' => 'stu',
	'PGSC0003DMG400009504' => 'stu',
	'PGSC0003DMG400009845' => 'stu',
	'PGSC0003DMG400011177' => 'stu',
	'PGSC0003DMG400011629' => 'stu',
	'PGSC0003DMG400013586' => 'stu',
	'PGSC0003DMG400013599' => 'stu',
	'PGSC0003DMG400014534' => 'stu',
	'PGSC0003DMG400016055' => 'stu',
	'PGSC0003DMG400016736' => 'stu',
	'PGSC0003DMG400016866' => 'stu',
	'PGSC0003DMG400017701' => 'stu',
	'PGSC0003DMG400018448' => 'stu',
	'PGSC0003DMG400020751' => 'stu',
	'PGSC0003DMG400021088' => 'stu',
	'PGSC0003DMG400021387' => 'stu',
	'PGSC0003DMG400021640' => 'stu',
	'PGSC0003DMG400021704' => 'stu',
	'PGSC0003DMG400022155' => 'stu',
	'PGSC0003DMG400023544' => 'stu',
	'PGSC0003DMG400023564' => 'stu',
	'PGSC0003DMG400028558' => 'stu',
	'PGSC0003DMG400028618' => 'stu',
	'PGSC0003DMG400029149' => 'stu',
	'PGSC0003DMG400029979' => 'stu',
	'PGSC0003DMG400030069' => 'stu',
	'PGSC0003DMG400031272' => 'stu',
	'PGSC0003DMG400034656' => 'stu',
	'PGSC0003DMG400035151' => 'stu',
	'PGSC0003DMG400035741' => 'stu',
	'PGSC0003DMG400036100' => 'stu',
	'PGSC0003DMG400037683' => 'stu',
	'PGSC0003DMG400038046' => 'stu',
	'PGSC0003DMG400040121' => 'stu',
	'PGSC0003DMG400042113' => 'stu',
	'PGSC0003DMG400042218' => 'stu',
	'PGSC0003DMG400044188' => 'stu',
	'PGSC0003DMG400044323' => 'stu',
	'PGSC0003DMG400045014' => 'stu',
	'PGSC0003DMG400045177' => 'stu',
	'PGSC0003DMG400047199' => 'stu',
	'Potri.017G071366' => 'ptr',
	'RcHm_v2.0_Chr2g0137481' => 'rch',
	'Sc20g0003180' => 'sci',
	'SEGI_00305' => 'sgi',
	'SEGI_02246' => 'sgi',
	'SEGI_03696' => 'sgi',
	'SEGI_05490' => 'sgi',
	'SEGI_05682' => 'sgi',
	'SEGI_05900' => 'sgi',
	'SEGI_06517' => 'sgi',
	'SEGI_12587' => 'sgi',
	'SEGI_13129' => 'sgi',
	'SEGI_16935' => 'sgi',
	'SEGI_18008' => 'sgi',
	'SEGI_18224' => 'sgi',
	'SEGI_20188' => 'sgi',
	'SEGI_20772' => 'sgi',
	'SEGI_20842' => 'sgi',
	'SEGI_22270' => 'sgi',
	'SEGI_22705' => 'sgi',
	'SEGI_23638' => 'sgi',
	'SEGI_23928' => 'sgi',
	'SEGI_24790' => 'sgi',
	'SEGI_28421' => 'sgi',
	'SEGI_28832' => 'sgi',
	'SEGI_29884' => 'sgi',
	'SEGI_30829' => 'sgi',
	'SEGI_35046' => 'sgi',
	'SEGI_35582' => 'sgi',
	'SEGI_37882' => 'sgi',
	'SEGI_39680' => 'sgi',
	'SEGI_40069' => 'sgi',
	'SEGI_40087' => 'sgi',
	'SEGI_41606' => 'sgi',
	'SGA_v2.0_scaffold50G18578' => 'sas',
	'SHI00293' => 'shi',
	'SHI00389' => 'shi',
	'SHI00445' => 'shi',
	'SHI01000' => 'shi',
	'SHI01503' => 'shi',
	'SHI01718' => 'shi',
	'SHI03454' => 'shi',
	'SHI03493' => 'shi',
	'SHI03494' => 'shi',
	'SHI03628' => 'shi',
	'SHI04457' => 'shi',
	'SHI04691' => 'shi',
	'SHI04829' => 'shi',
	'SHI05225' => 'shi',
	'SHI06326' => 'shi',
	'SHI06505' => 'shi',
	'SHI06770' => 'shi',
	'SHI07388' => 'shi',
	'SHI07582' => 'shi',
	'SHI07583' => 'shi',
	'SHI08271' => 'shi',
	'SHI10619' => 'shi',
	'SHI10892' => 'shi',
	'SHI10910' => 'shi',
	'SHI10911' => 'shi',
	'SHI14326' => 'shi',
	'SHI14681' => 'shi',
	'SHI15017' => 'shi',
	'SHI15096' => 'shi',
	'SHI15120' => 'shi',
	'SHI15274' => 'shi',
	'SHI16232' => 'shi',
	'SHI16811' => 'shi',
	'SHI17386' => 'shi',
	'SHI17926' => 'shi',
	'SHI18293' => 'shi',
	'SHI20489' => 'shi',
	'SHI20658' => 'shi',
	'SHI20663' => 'shi',
	'SHI21566' => 'shi',
	'SHI22547' => 'shi',
	'SHI22708' => 'shi',
	'SHI22709' => 'shi',
	'SHI22878' => 'shi',
	'SHI22879' => 'shi',
	'SHI23024' => 'shi',
	'SHI25053' => 'shi',
	'SHI25076' => 'shi',
	'SHI25116' => 'shi',
	'SHI25381' => 'shi',
	'SHI25535' => 'shi',
	'SHI25740' => 'shi',
	'SHI25991' => 'shi',
	'SHI26344' => 'shi',
	'SHI26345' => 'shi',
	'SHI27097' => 'shi',
	'SHI27140' => 'shi',
	'SHI27178' => 'shi',
	'SHI27207' => 'shi',
	'SHI27225' => 'shi',
	'SHI27734' => 'shi',
	'SHI27806' => 'shi',
	'SHI28576' => 'shi',
	'SHI29081' => 'shi',
	'SHI30038' => 'shi',
	'SHI30394' => 'shi',
	'SHI30652' => 'shi',
	'SHI32154' => 'shi',
	'SHI32205' => 'shi',
	'SHI32365' => 'shi',
	'SHI32439' => 'shi',
	'SHI32505' => 'shi',
	'SHI32626' => 'shi',
	'SHI32714' => 'shi',
	'SHI32715' => 'shi',
	'SHI32716' => 'shi',
	'SHI33118' => 'shi',
	'SHI33318' => 'shi',
	'SHI33373' => 'shi',
	'SHI33512' => 'shi',
	'SHI33625' => 'shi',
	'SHI34327' => 'shi',
	'SHI35604' => 'shi',
	'SHI36119' => 'shi',
	'SHI36120' => 'shi',
	'SHI44959' => 'shi',
	'SHI46406' => 'shi',
	'SHI48191' => 'shi',
	'SHI48192' => 'shi',
	'Solyc10g150111.1' => 'sly',
	'Solyc12g062340.2' => 'sly',
	'Sopen00g001750' => 'spe',
	'Sopen00g001820' => 'spe',
	'Sopen00g001830' => 'spe',
	'Sopen00g001890' => 'spe',
	'Sopen00g002240' => 'spe',
	'Sopen00g003950' => 'spe',
	'Sopen00g004130' => 'spe',
	'Sopen00g004810' => 'spe',
	'Sopen00g005120' => 'spe',
	'Sopen00g005190' => 'spe',
	'Sopen00g007000' => 'spe',
	'Sopen00g007210' => 'spe',
	'Sopen00g012840' => 'spe',
	'Sopen00g013060' => 'spe',
	'Sopen00g013610' => 'spe',
	'Sopen00g013630' => 'spe',
	'Sopen01g004610' => 'spe',
	'Sopen01g007660' => 'spe',
	'Sopen01g007750' => 'spe',
	'Sopen01g007760' => 'spe',
	'Sopen01g007770' => 'spe',
	'Sopen01g007860' => 'spe',
	'Sopen01g009130' => 'spe',
	'Sopen01g009820' => 'spe',
	'Sopen01g011240' => 'spe',
	'Sopen01g012740' => 'spe',
	'Sopen01g013840' => 'spe',
	'Sopen01g013850' => 'spe',
	'Sopen01g016140' => 'spe',
	'Sopen01g016150' => 'spe',
	'Sopen01g016830' => 'spe',
	'Sopen01g017260' => 'spe',
	'Sopen01g019000' => 'spe',
	'Sopen01g019690' => 'spe',
	'Sopen01g022160' => 'spe',
	'Sopen01g024000' => 'spe',
	'Sopen01g024670' => 'spe',
	'Sopen01g024770' => 'spe',
	'Sopen01g024900' => 'spe',
	'Sopen01g025130' => 'spe',
	'Sopen01g026370' => 'spe',
	'Sopen01g041640' => 'spe',
	'Sopen01g046930' => 'spe',
	'Sopen02g001360' => 'spe',
	'Sopen02g002010' => 'spe',
	'Sopen02g003600' => 'spe',
	'Sopen02g003730' => 'spe',
	'Sopen02g005430' => 'spe',
	'Sopen02g005510' => 'spe',
	'Sopen02g006840' => 'spe',
	'Sopen02g007390' => 'spe',
	'Sopen02g007420' => 'spe',
	'Sopen02g007540' => 'spe',
	'Sopen02g007920' => 'spe',
	'Sopen02g008960' => 'spe',
	'Sopen02g009450' => 'spe',
	'Sopen02g009460' => 'spe',
	'Sopen02g011320' => 'spe',
	'Sopen02g012680' => 'spe',
	'Sopen02g018090' => 'spe',
	'Sopen02g022140' => 'spe',
	'Sopen03g010330' => 'spe',
	'Sopen03g013130' => 'spe',
	'Sopen03g013180' => 'spe',
	'Sopen03g013230' => 'spe',
	'Sopen03g014110' => 'spe',
	'Sopen03g015260' => 'spe',
	'Sopen03g015790' => 'spe',
	'Sopen03g018360' => 'spe',
	'Sopen03g024470' => 'spe',
	'Sopen03g026800' => 'spe',
	'Sopen04g003180' => 'spe',
	'Sopen04g008260' => 'spe',
	'Sopen04g010320' => 'spe',
	'Sopen04g011020' => 'spe',
	'Sopen04g011200' => 'spe',
	'Sopen04g011280' => 'spe',
	'Sopen04g021910' => 'spe',
	'Sopen04g023870' => 'spe',
	'Sopen05g009880' => 'spe',
	'Sopen05g011580' => 'spe',
	'Sopen05g012230' => 'spe',
	'Sopen05g012500' => 'spe',
	'Sopen05g012560' => 'spe',
	'Sopen05g012570' => 'spe',
	'Sopen05g012760' => 'spe',
	'Sopen05g013710' => 'spe',
	'Sopen05g015050' => 'spe',
	'Sopen05g026090' => 'spe',
	'Sopen05g028020' => 'spe',
	'Sopen05g028610' => 'spe',
	'Sopen05g029300' => 'spe',
	'Sopen06g005520' => 'spe',
	'Sopen06g006750' => 'spe',
	'Sopen06g008160' => 'spe',
	'Sopen06g009120' => 'spe',
	'Sopen06g013550' => 'spe',
	'Sopen06g015340' => 'spe',
	'Sopen06g018330' => 'spe',
	'Sopen06g021630' => 'spe',
	'Sopen06g021650' => 'spe',
	'Sopen07g006730' => 'spe',
	'Sopen07g008690' => 'spe',
	'Sopen07g008700' => 'spe',
	'Sopen07g008720' => 'spe',
	'Sopen07g008870' => 'spe',
	'Sopen07g009400' => 'spe',
	'Sopen07g009410' => 'spe',
	'Sopen07g009470' => 'spe',
	'Sopen07g009540' => 'spe',
	'Sopen07g011060' => 'spe',
	'Sopen07g011110' => 'spe',
	'Sopen07g011820' => 'spe',
	'Sopen07g013260' => 'spe',
	'Sopen07g014740' => 'spe',
	'Sopen07g015160' => 'spe',
	'Sopen07g015230' => 'spe',
	'Sopen07g016240' => 'spe',
	'Sopen07g017200' => 'spe',
	'Sopen07g017810' => 'spe',
	'Sopen07g019030' => 'spe',
	'Sopen07g020430' => 'spe',
	'Sopen07g021010' => 'spe',
	'Sopen07g021340' => 'spe',
	'Sopen07g022950' => 'spe',
	'Sopen07g027860' => 'spe',
	'Sopen08g007820' => 'spe',
	'Sopen08g009330' => 'spe',
	'Sopen08g012310' => 'spe',
	'Sopen08g012560' => 'spe',
	'Sopen08g014040' => 'spe',
	'Sopen08g014650' => 'spe',
	'Sopen08g017020' => 'spe',
	'Sopen08g018300' => 'spe',
	'Sopen08g020530' => 'spe',
	'Sopen09g008590' => 'spe',
	'Sopen09g008780' => 'spe',
	'Sopen09g011540' => 'spe',
	'Sopen09g011920' => 'spe',
	'Sopen09g014170' => 'spe',
	'Sopen09g016520' => 'spe',
	'Sopen09g021030' => 'spe',
	'Sopen09g023110' => 'spe',
	'Sopen09g024750' => 'spe',
	'Sopen09g025230' => 'spe',
	'Sopen09g025600' => 'spe',
	'Sopen09g034660' => 'spe',
	'Sopen10g006700' => 'spe',
	'Sopen10g009130' => 'spe',
	'Sopen10g009140' => 'spe',
	'Sopen10g009560' => 'spe',
	'Sopen10g010340' => 'spe',
	'Sopen10g011040' => 'spe',
	'Sopen10g013650' => 'spe',
	'Sopen10g014130' => 'spe',
	'Sopen10g014140' => 'spe',
	'Sopen10g014760' => 'spe',
	'Sopen10g015080' => 'spe',
	'Sopen10g015830' => 'spe',
	'Sopen10g018240' => 'spe',
	'Sopen10g018300' => 'spe',
	'Sopen10g018350' => 'spe',
	'Sopen10g018460' => 'spe',
	'Sopen10g018670' => 'spe',
	'Sopen10g019040' => 'spe',
	'Sopen10g019330' => 'spe',
	'Sopen10g019340' => 'spe',
	'Sopen10g019360' => 'spe',
	'Sopen10g019370' => 'spe',
	'Sopen10g020620' => 'spe',
	'Sopen10g021550' => 'spe',
	'Sopen10g022160' => 'spe',
	'Sopen10g023540' => 'spe',
	'Sopen10g023570' => 'spe',
	'Sopen10g023580' => 'spe',
	'Sopen10g023600' => 'spe',
	'Sopen10g023620' => 'spe',
	'Sopen10g023650' => 'spe',
	'Sopen10g024800' => 'spe',
	'Sopen10g026170' => 'spe',
	'Sopen11g007790' => 'spe',
	'Sopen11g010170' => 'spe',
	'Sopen11g010580' => 'spe',
	'Sopen11g013420' => 'spe',
	'Sopen11g016330' => 'spe',
	'Sopen11g017010' => 'spe',
	'Sopen11g018110' => 'spe',
	'Sopen11g018960' => 'spe',
	'Sopen11g019000' => 'spe',
	'Sopen11g019970' => 'spe',
	'Sopen11g020340' => 'spe',
	'Sopen11g020970' => 'spe',
	'Sopen12g008510' => 'spe',
	'Sopen12g008910' => 'spe',
	'Sopen12g009010' => 'spe',
	'Sopen12g009120' => 'spe',
	'Sopen12g009340' => 'spe',
	'Sopen12g009580' => 'spe',
	'Sopen12g010190' => 'spe',
	'Sopen12g010320' => 'spe',
	'Sopen12g010370' => 'spe',
	'Sopen12g012140' => 'spe',
	'Sopen12g012700' => 'spe',
	'Sopen12g013490' => 'spe',
	'Sopen12g014290' => 'spe',
	'Sopen12g015060' => 'spe',
	'Sopen12g015610' => 'spe',
	'Sopen12g018380' => 'spe',
	'Sopen12g019150' => 'spe',
	'Sopen12g020560' => 'spe',
	'Sopen12g023320' => 'spe',
	'Sp3g24190' => 'spa',
	'Sp4g07270' => 'spa',
	'Sp4g07530' => 'spa',
	'Sp4g07670' => 'spa',
	'Sp6g09360' => 'spa',
	'Sp7g04180' => 'spa',
	'Sp7g04980' => 'spa',
	'Sp7g08200' => 'spa',
	'Sp7g09660' => 'spa',
	'SpUn0081_0010' => 'spa',
	'THA.LOC104803417' => 'tha',
	'THA.LOC104817059' => 'tha',
	'Thecc.01G188700' => 'tca',
	'Thecc.05G106700' => 'tca',
	'Thecc.06G068800' => 'tca',
	'Thecc.07G189100' => 'tca',
	'Thecc.09G172800' => 'tca',
	'Thhalv10023044m.g' => 'esa',
	'Thhalv10023881m.g' => 'esa',
	'Thhalv10024067m.g' => 'esa'
)
$gf_id = 'HOM05D000691'
$gf_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$gf_types_configuration = array(
	'HOMFAM' => array(
		'order' => '1',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	),
	'ORTHOFAM' => array(
		'order' => '2',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	)
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$allow_async_use = true
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D000691'
)
$data_identifier = 'HOM05D000691'
$data_type = 'gf_id'
$species_gene_counts = array(
	'amhyb' => (int) 18,
	'aly' => (int) 1,
	'atr' => (int) 21,
	'acertr' => (int) 1,
	'cqu' => (int) 90,
	'bol' => (int) 1,
	'can' => (int) 7,
	'cil' => (int) 3,
	'cla' => (int) 15,
	'col' => (int) 1,
	'cpa' => (int) 2,
	'csa' => (int) 7,
	'camsi' => (int) 10,
	'din' => (int) 1,
	'dzi' => (int) 2,
	'bvu' => (int) 18,
	'fve' => (int) 22,
	'gra' => (int) 1,
	'han' => (int) 7,
	'hma' => (int) 9,
	'sun' => (int) 16,
	'lonja' => (int) 46,
	'mes' => (int) 8,
	'mbi' => (int) 2,
	'cme' => (int) 6,
	'oeu' => (int) 110,
	'stu' => (int) 45,
	'ptr' => (int) 1,
	'rch' => (int) 1,
	'sci' => (int) 1,
	'sgi' => (int) 31,
	'sas' => (int) 1,
	'shi' => (int) 89,
	'sly' => (int) 2,
	'spe' => (int) 211,
	'spa' => (int) 10,
	'tha' => (int) 2,
	'tca' => (int) 5,
	'esa' => (int) 3
)
$gf_gene_species = 'esa'
$gf_gene_id = 'Thhalv10024067m.g'
$species_info = array(
	'species' => 'csa',
	'common_name' => 'Cucumis sativus L.',
	'tax_id' => '3659',
	'version' => 'v3.0'
)
$local_species = 'csa'
$disabled = ''
$selected = ''
$num_hits = (int) 1
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Analysis/custom_tree_creation.ctp, line 27
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933

Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]
Code Context
        $disabled    = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";

        $selected    = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";

        $num_hits    = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D000691',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '827',
		'num_species' => '39'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'gf_genes' => array(
		'Ah.01g012340' => 'amhyb',
		'Ah.01g013530' => 'amhyb',
		'Ah.03g143080' => 'amhyb',
		'Ah.06g186750' => 'amhyb',
		'Ah.06g186800' => 'amhyb',
		'Ah.07g200050' => 'amhyb',
		'Ah.08g209110' => 'amhyb',
		'Ah.09g229600' => 'amhyb',
		'Ah.09g229610' => 'amhyb',
		'Ah.10g026490' => 'amhyb',
		'Ah.12g065350' => 'amhyb',
		'Ah.13g069310' => 'amhyb',
		'Ah.14g080130' => 'amhyb',
		'Ah.14g081130' => 'amhyb',
		'Ah.14g081140' => 'amhyb',
		'Ah.16g109160' => 'amhyb',
		'Ah.16g109170' => 'amhyb',
		'Ah.16g109370' => 'amhyb',
		'AL3G47720' => 'aly',
		'ATR0012G060' => 'atr',
		'ATR0026G029' => 'atr',
		'ATR0193G043' => 'atr',
		'ATR0561G076' => 'atr',
		'ATR0561G181' => 'atr',
		'ATR0568G014' => 'atr',
		'ATR0568G114' => 'atr',
		'ATR0620G039' => 'atr',
		'ATR0629G125' => 'atr',
		'ATR0661G583' => 'atr',
		'ATR0686G019' => 'atr',
		'ATR0693G232' => 'atr',
		'ATR0697G104' => 'atr',
		'ATR0789G146' => 'atr',
		'ATR0794G066' => 'atr',
		'ATR1127G127' => 'atr',
		'ATR1131G040' => 'atr',
		'ATR1134G004' => 'atr',
		'ATR1134G095' => 'atr',
		'ATR1152G110' => 'atr',
		'ATR1153G065' => 'atr',
		'Atru.chr3.2296' => 'acertr',
		'AUR62000692' => 'cqu',
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		'ClCG11G007310' => 'cla',
		'COL.COLO4_16141' => 'col',
		'Cpa.g.sc202.2' => 'cpa',
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		'CSS0013023' => 'camsi',
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		'FvH4_c7g00010' => 'fve',
		'Gorai.012G165300' => 'gra',
		'HanXRQChr00c0452g0574871' => 'han',
		'HanXRQChr01g0029471' => 'han',
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		'HanXRQChr15g0468361' => 'han',
		'Hma1.2p1_0021F.1_g014270' => 'hma',
		'Hma1.2p1_0026F.1_g016730' => 'hma',
		'Hma1.2p1_0177F.1_g077930' => 'hma',
		'Hma1.2p1_0370F.1_g137540' => 'hma',
		'Hma1.2p1_0637F.1_g193600' => 'hma',
		'Hma1.2p1_1045F.1_g251360' => 'hma',
		'Hma1.2p1_1168F.1_g263120' => 'hma',
		'Hma1.2p1_1640F.1_g295040' => 'hma',
		'Hma1.2p1_2467F.1_g322660' => 'hma',
		'Hund01785' => 'sun',
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		'Hund28766' => 'sun',
		'Hund28768' => 'sun',
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		'Lj1A489G15' => 'lonja',
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		'Lju2092C1T0' => 'lonja',
		'Lju225C6G6' => 'lonja',
		'Lju427C2T0' => 'lonja',
		'Lju50C9T4' => 'lonja',
		'Lju926C12T2' => 'lonja',
		'Manes.06G126602' => 'mes',
		'Manes.13G002614' => 'mes',
		'Manes.15G192966' => 'mes',
		'Manes.17G001483' => 'mes',
		'Manes.17G022547' => 'mes',
		'Manes.18G042825' => 'mes',
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		'Manes.S027416' => 'mes',
		'MBI02_g15234_MAGBIO' => 'mbi',
		'MBI16_g35584_MAGBIO' => 'mbi',
		'MELO3C008948.2' => 'cme',
		'MELO3C010395.2' => 'cme',
		'MELO3C010396.2' => 'cme',
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		'Oeu048360.1' => 'oeu',
		'Oeu048565.1' => 'oeu',
		'Oeu049268.1' => 'oeu',
		'Oeu049465.1' => 'oeu',
		'Oeu049978.1' => 'oeu',
		'Oeu050628.1' => 'oeu',
		'Oeu050727.1' => 'oeu',
		'Oeu052065.1' => 'oeu',
		'Oeu052582.1' => 'oeu',
		'Oeu053090.1' => 'oeu',
		'Oeu053644.1' => 'oeu',
		'Oeu053713.1' => 'oeu',
		'Oeu055027.1' => 'oeu',
		'Oeu057741.1' => 'oeu',
		'Oeu058973.1' => 'oeu',
		'Oeu060366.1' => 'oeu',
		'Oeu061428.1' => 'oeu',
		'Oeu062087.1' => 'oeu',
		'Oeu062537.1' => 'oeu',
		'Oeu062538.1' => 'oeu',
		'Oeu064387.1' => 'oeu',
		'PGSC0003DMG400002344' => 'stu',
		'PGSC0003DMG400004046' => 'stu',
		'PGSC0003DMG400006418' => 'stu',
		'PGSC0003DMG400008410' => 'stu',
		'PGSC0003DMG400008620' => 'stu',
		'PGSC0003DMG400009504' => 'stu',
		'PGSC0003DMG400009845' => 'stu',
		'PGSC0003DMG400011177' => 'stu',
		'PGSC0003DMG400011629' => 'stu',
		'PGSC0003DMG400013586' => 'stu',
		'PGSC0003DMG400013599' => 'stu',
		'PGSC0003DMG400014534' => 'stu',
		'PGSC0003DMG400016055' => 'stu',
		'PGSC0003DMG400016736' => 'stu',
		'PGSC0003DMG400016866' => 'stu',
		'PGSC0003DMG400017701' => 'stu',
		'PGSC0003DMG400018448' => 'stu',
		'PGSC0003DMG400020751' => 'stu',
		'PGSC0003DMG400021088' => 'stu',
		'PGSC0003DMG400021387' => 'stu',
		'PGSC0003DMG400021640' => 'stu',
		'PGSC0003DMG400021704' => 'stu',
		'PGSC0003DMG400022155' => 'stu',
		'PGSC0003DMG400023544' => 'stu',
		'PGSC0003DMG400023564' => 'stu',
		'PGSC0003DMG400028558' => 'stu',
		'PGSC0003DMG400028618' => 'stu',
		'PGSC0003DMG400029149' => 'stu',
		'PGSC0003DMG400029979' => 'stu',
		'PGSC0003DMG400030069' => 'stu',
		'PGSC0003DMG400031272' => 'stu',
		'PGSC0003DMG400034656' => 'stu',
		'PGSC0003DMG400035151' => 'stu',
		'PGSC0003DMG400035741' => 'stu',
		'PGSC0003DMG400036100' => 'stu',
		'PGSC0003DMG400037683' => 'stu',
		'PGSC0003DMG400038046' => 'stu',
		'PGSC0003DMG400040121' => 'stu',
		'PGSC0003DMG400042113' => 'stu',
		'PGSC0003DMG400042218' => 'stu',
		'PGSC0003DMG400044188' => 'stu',
		'PGSC0003DMG400044323' => 'stu',
		'PGSC0003DMG400045014' => 'stu',
		'PGSC0003DMG400045177' => 'stu',
		'PGSC0003DMG400047199' => 'stu',
		'Potri.017G071366' => 'ptr',
		'RcHm_v2.0_Chr2g0137481' => 'rch',
		'Sc20g0003180' => 'sci',
		'SEGI_00305' => 'sgi',
		'SEGI_02246' => 'sgi',
		'SEGI_03696' => 'sgi',
		'SEGI_05490' => 'sgi',
		'SEGI_05682' => 'sgi',
		'SEGI_05900' => 'sgi',
		'SEGI_06517' => 'sgi',
		'SEGI_12587' => 'sgi',
		'SEGI_13129' => 'sgi',
		'SEGI_16935' => 'sgi',
		'SEGI_18008' => 'sgi',
		'SEGI_18224' => 'sgi',
		'SEGI_20188' => 'sgi',
		'SEGI_20772' => 'sgi',
		'SEGI_20842' => 'sgi',
		'SEGI_22270' => 'sgi',
		'SEGI_22705' => 'sgi',
		'SEGI_23638' => 'sgi',
		'SEGI_23928' => 'sgi',
		'SEGI_24790' => 'sgi',
		'SEGI_28421' => 'sgi',
		'SEGI_28832' => 'sgi',
		'SEGI_29884' => 'sgi',
		'SEGI_30829' => 'sgi',
		'SEGI_35046' => 'sgi',
		'SEGI_35582' => 'sgi',
		'SEGI_37882' => 'sgi',
		'SEGI_39680' => 'sgi',
		'SEGI_40069' => 'sgi',
		'SEGI_40087' => 'sgi',
		'SEGI_41606' => 'sgi',
		'SGA_v2.0_scaffold50G18578' => 'sas',
		'SHI00293' => 'shi',
		'SHI00389' => 'shi',
		'SHI00445' => 'shi',
		'SHI01000' => 'shi',
		'SHI01503' => 'shi',
		'SHI01718' => 'shi',
		'SHI03454' => 'shi',
		'SHI03493' => 'shi',
		'SHI03494' => 'shi',
		'SHI03628' => 'shi',
		'SHI04457' => 'shi',
		'SHI04691' => 'shi',
		'SHI04829' => 'shi',
		'SHI05225' => 'shi',
		'SHI06326' => 'shi',
		'SHI06505' => 'shi',
		'SHI06770' => 'shi',
		'SHI07388' => 'shi',
		'SHI07582' => 'shi',
		'SHI07583' => 'shi',
		'SHI08271' => 'shi',
		'SHI10619' => 'shi',
		'SHI10892' => 'shi',
		'SHI10910' => 'shi',
		'SHI10911' => 'shi',
		'SHI14326' => 'shi',
		'SHI14681' => 'shi',
		'SHI15017' => 'shi',
		'SHI15096' => 'shi',
		'SHI15120' => 'shi',
		'SHI15274' => 'shi',
		'SHI16232' => 'shi',
		'SHI16811' => 'shi',
		'SHI17386' => 'shi',
		'SHI17926' => 'shi',
		'SHI18293' => 'shi',
		'SHI20489' => 'shi',
		'SHI20658' => 'shi',
		'SHI20663' => 'shi',
		'SHI21566' => 'shi',
		'SHI22547' => 'shi',
		'SHI22708' => 'shi',
		'SHI22709' => 'shi',
		'SHI22878' => 'shi',
		'SHI22879' => 'shi',
		'SHI23024' => 'shi',
		'SHI25053' => 'shi',
		'SHI25076' => 'shi',
		'SHI25116' => 'shi',
		'SHI25381' => 'shi',
		'SHI25535' => 'shi',
		'SHI25740' => 'shi',
		'SHI25991' => 'shi',
		'SHI26344' => 'shi',
		'SHI26345' => 'shi',
		'SHI27097' => 'shi',
		'SHI27140' => 'shi',
		'SHI27178' => 'shi',
		'SHI27207' => 'shi',
		'SHI27225' => 'shi',
		'SHI27734' => 'shi',
		'SHI27806' => 'shi',
		'SHI28576' => 'shi',
		'SHI29081' => 'shi',
		'SHI30038' => 'shi',
		'SHI30394' => 'shi',
		'SHI30652' => 'shi',
		'SHI32154' => 'shi',
		'SHI32205' => 'shi',
		'SHI32365' => 'shi',
		'SHI32439' => 'shi',
		'SHI32505' => 'shi',
		'SHI32626' => 'shi',
		'SHI32714' => 'shi',
		'SHI32715' => 'shi',
		'SHI32716' => 'shi',
		'SHI33118' => 'shi',
		'SHI33318' => 'shi',
		'SHI33373' => 'shi',
		'SHI33512' => 'shi',
		'SHI33625' => 'shi',
		'SHI34327' => 'shi',
		'SHI35604' => 'shi',
		'SHI36119' => 'shi',
		'SHI36120' => 'shi',
		'SHI44959' => 'shi',
		'SHI46406' => 'shi',
		'SHI48191' => 'shi',
		'SHI48192' => 'shi',
		'Solyc10g150111.1' => 'sly',
		'Solyc12g062340.2' => 'sly',
		'Sopen00g001750' => 'spe',
		'Sopen00g001820' => 'spe',
		'Sopen00g001830' => 'spe',
		'Sopen00g001890' => 'spe',
		'Sopen00g002240' => 'spe',
		'Sopen00g003950' => 'spe',
		'Sopen00g004130' => 'spe',
		'Sopen00g004810' => 'spe',
		'Sopen00g005120' => 'spe',
		'Sopen00g005190' => 'spe',
		'Sopen00g007000' => 'spe',
		'Sopen00g007210' => 'spe',
		'Sopen00g012840' => 'spe',
		'Sopen00g013060' => 'spe',
		'Sopen00g013610' => 'spe',
		'Sopen00g013630' => 'spe',
		'Sopen01g004610' => 'spe',
		'Sopen01g007660' => 'spe',
		'Sopen01g007750' => 'spe',
		'Sopen01g007760' => 'spe',
		'Sopen01g007770' => 'spe',
		'Sopen01g007860' => 'spe',
		'Sopen01g009130' => 'spe',
		'Sopen01g009820' => 'spe',
		'Sopen01g011240' => 'spe',
		'Sopen01g012740' => 'spe',
		'Sopen01g013840' => 'spe',
		'Sopen01g013850' => 'spe',
		'Sopen01g016140' => 'spe',
		'Sopen01g016150' => 'spe',
		'Sopen01g016830' => 'spe',
		'Sopen01g017260' => 'spe',
		'Sopen01g019000' => 'spe',
		'Sopen01g019690' => 'spe',
		'Sopen01g022160' => 'spe',
		'Sopen01g024000' => 'spe',
		'Sopen01g024670' => 'spe',
		'Sopen01g024770' => 'spe',
		'Sopen01g024900' => 'spe',
		'Sopen01g025130' => 'spe',
		'Sopen01g026370' => 'spe',
		'Sopen01g041640' => 'spe',
		'Sopen01g046930' => 'spe',
		'Sopen02g001360' => 'spe',
		'Sopen02g002010' => 'spe',
		'Sopen02g003600' => 'spe',
		'Sopen02g003730' => 'spe',
		'Sopen02g005430' => 'spe',
		'Sopen02g005510' => 'spe',
		'Sopen02g006840' => 'spe',
		'Sopen02g007390' => 'spe',
		'Sopen02g007420' => 'spe',
		'Sopen02g007540' => 'spe',
		'Sopen02g007920' => 'spe',
		'Sopen02g008960' => 'spe',
		'Sopen02g009450' => 'spe',
		'Sopen02g009460' => 'spe',
		'Sopen02g011320' => 'spe',
		'Sopen02g012680' => 'spe',
		'Sopen02g018090' => 'spe',
		'Sopen02g022140' => 'spe',
		'Sopen03g010330' => 'spe',
		'Sopen03g013130' => 'spe',
		'Sopen03g013180' => 'spe',
		'Sopen03g013230' => 'spe',
		'Sopen03g014110' => 'spe',
		'Sopen03g015260' => 'spe',
		'Sopen03g015790' => 'spe',
		'Sopen03g018360' => 'spe',
		'Sopen03g024470' => 'spe',
		'Sopen03g026800' => 'spe',
		'Sopen04g003180' => 'spe',
		'Sopen04g008260' => 'spe',
		'Sopen04g010320' => 'spe',
		'Sopen04g011020' => 'spe',
		'Sopen04g011200' => 'spe',
		'Sopen04g011280' => 'spe',
		'Sopen04g021910' => 'spe',
		'Sopen04g023870' => 'spe',
		'Sopen05g009880' => 'spe',
		'Sopen05g011580' => 'spe',
		'Sopen05g012230' => 'spe',
		'Sopen05g012500' => 'spe',
		'Sopen05g012560' => 'spe',
		'Sopen05g012570' => 'spe',
		'Sopen05g012760' => 'spe',
		'Sopen05g013710' => 'spe',
		'Sopen05g015050' => 'spe',
		'Sopen05g026090' => 'spe',
		'Sopen05g028020' => 'spe',
		'Sopen05g028610' => 'spe',
		'Sopen05g029300' => 'spe',
		'Sopen06g005520' => 'spe',
		'Sopen06g006750' => 'spe',
		'Sopen06g008160' => 'spe',
		'Sopen06g009120' => 'spe',
		'Sopen06g013550' => 'spe',
		'Sopen06g015340' => 'spe',
		'Sopen06g018330' => 'spe',
		'Sopen06g021630' => 'spe',
		'Sopen06g021650' => 'spe',
		'Sopen07g006730' => 'spe',
		'Sopen07g008690' => 'spe',
		'Sopen07g008700' => 'spe',
		'Sopen07g008720' => 'spe',
		'Sopen07g008870' => 'spe',
		'Sopen07g009400' => 'spe',
		'Sopen07g009410' => 'spe',
		'Sopen07g009470' => 'spe',
		'Sopen07g009540' => 'spe',
		'Sopen07g011060' => 'spe',
		'Sopen07g011110' => 'spe',
		'Sopen07g011820' => 'spe',
		'Sopen07g013260' => 'spe',
		'Sopen07g014740' => 'spe',
		'Sopen07g015160' => 'spe',
		'Sopen07g015230' => 'spe',
		'Sopen07g016240' => 'spe',
		'Sopen07g017200' => 'spe',
		'Sopen07g017810' => 'spe',
		'Sopen07g019030' => 'spe',
		'Sopen07g020430' => 'spe',
		'Sopen07g021010' => 'spe',
		'Sopen07g021340' => 'spe',
		'Sopen07g022950' => 'spe',
		'Sopen07g027860' => 'spe',
		'Sopen08g007820' => 'spe',
		'Sopen08g009330' => 'spe',
		'Sopen08g012310' => 'spe',
		'Sopen08g012560' => 'spe',
		'Sopen08g014040' => 'spe',
		'Sopen08g014650' => 'spe',
		'Sopen08g017020' => 'spe',
		'Sopen08g018300' => 'spe',
		'Sopen08g020530' => 'spe',
		'Sopen09g008590' => 'spe',
		'Sopen09g008780' => 'spe',
		'Sopen09g011540' => 'spe',
		'Sopen09g011920' => 'spe',
		'Sopen09g014170' => 'spe',
		'Sopen09g016520' => 'spe',
		'Sopen09g021030' => 'spe',
		'Sopen09g023110' => 'spe',
		'Sopen09g024750' => 'spe',
		'Sopen09g025230' => 'spe',
		'Sopen09g025600' => 'spe',
		'Sopen09g034660' => 'spe',
		'Sopen10g006700' => 'spe',
		'Sopen10g009130' => 'spe',
		'Sopen10g009140' => 'spe',
		'Sopen10g009560' => 'spe',
		'Sopen10g010340' => 'spe',
		'Sopen10g011040' => 'spe',
		'Sopen10g013650' => 'spe',
		'Sopen10g014130' => 'spe',
		'Sopen10g014140' => 'spe',
		'Sopen10g014760' => 'spe',
		'Sopen10g015080' => 'spe',
		'Sopen10g015830' => 'spe',
		'Sopen10g018240' => 'spe',
		'Sopen10g018300' => 'spe',
		'Sopen10g018350' => 'spe',
		'Sopen10g018460' => 'spe',
		'Sopen10g018670' => 'spe',
		'Sopen10g019040' => 'spe',
		'Sopen10g019330' => 'spe',
		'Sopen10g019340' => 'spe',
		'Sopen10g019360' => 'spe',
		'Sopen10g019370' => 'spe',
		'Sopen10g020620' => 'spe',
		'Sopen10g021550' => 'spe',
		'Sopen10g022160' => 'spe',
		'Sopen10g023540' => 'spe',
		'Sopen10g023570' => 'spe',
		'Sopen10g023580' => 'spe',
		'Sopen10g023600' => 'spe',
		'Sopen10g023620' => 'spe',
		'Sopen10g023650' => 'spe',
		'Sopen10g024800' => 'spe',
		'Sopen10g026170' => 'spe',
		'Sopen11g007790' => 'spe',
		'Sopen11g010170' => 'spe',
		'Sopen11g010580' => 'spe',
		'Sopen11g013420' => 'spe',
		'Sopen11g016330' => 'spe',
		'Sopen11g017010' => 'spe',
		'Sopen11g018110' => 'spe',
		'Sopen11g018960' => 'spe',
		'Sopen11g019000' => 'spe',
		'Sopen11g019970' => 'spe',
		'Sopen11g020340' => 'spe',
		'Sopen11g020970' => 'spe',
		'Sopen12g008510' => 'spe',
		'Sopen12g008910' => 'spe',
		'Sopen12g009010' => 'spe',
		'Sopen12g009120' => 'spe',
		'Sopen12g009340' => 'spe',
		'Sopen12g009580' => 'spe',
		'Sopen12g010190' => 'spe',
		'Sopen12g010320' => 'spe',
		'Sopen12g010370' => 'spe',
		'Sopen12g012140' => 'spe',
		'Sopen12g012700' => 'spe',
		'Sopen12g013490' => 'spe',
		'Sopen12g014290' => 'spe',
		'Sopen12g015060' => 'spe',
		'Sopen12g015610' => 'spe',
		'Sopen12g018380' => 'spe',
		'Sopen12g019150' => 'spe',
		'Sopen12g020560' => 'spe',
		'Sopen12g023320' => 'spe',
		'Sp3g24190' => 'spa',
		'Sp4g07270' => 'spa',
		'Sp4g07530' => 'spa',
		'Sp4g07670' => 'spa',
		'Sp6g09360' => 'spa',
		'Sp7g04180' => 'spa',
		'Sp7g04980' => 'spa',
		'Sp7g08200' => 'spa',
		'Sp7g09660' => 'spa',
		'SpUn0081_0010' => 'spa',
		'THA.LOC104803417' => 'tha',
		'THA.LOC104817059' => 'tha',
		'Thecc.01G188700' => 'tca',
		'Thecc.05G106700' => 'tca',
		'Thecc.06G068800' => 'tca',
		'Thecc.07G189100' => 'tca',
		'Thecc.09G172800' => 'tca',
		'Thhalv10023044m.g' => 'esa',
		'Thhalv10023881m.g' => 'esa',
		'Thhalv10024067m.g' => 'esa'
	),
	'gf_id' => 'HOM05D000691',
	'gf_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'gf_types_configuration' => array(
		'HOMFAM' => array(
			'order' => '1',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		),
		'ORTHOFAM' => array(
			'order' => '2',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		)
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'allow_async_use' => true,
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D000691'
	),
	'data_identifier' => 'HOM05D000691',
	'data_type' => 'gf_id'
)
$sidebar_info = array(
	'gf_id' => 'HOM05D000691',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '827',
	'num_species' => '39'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$gf_genes = array(
	'Ah.01g012340' => 'amhyb',
	'Ah.01g013530' => 'amhyb',
	'Ah.03g143080' => 'amhyb',
	'Ah.06g186750' => 'amhyb',
	'Ah.06g186800' => 'amhyb',
	'Ah.07g200050' => 'amhyb',
	'Ah.08g209110' => 'amhyb',
	'Ah.09g229600' => 'amhyb',
	'Ah.09g229610' => 'amhyb',
	'Ah.10g026490' => 'amhyb',
	'Ah.12g065350' => 'amhyb',
	'Ah.13g069310' => 'amhyb',
	'Ah.14g080130' => 'amhyb',
	'Ah.14g081130' => 'amhyb',
	'Ah.14g081140' => 'amhyb',
	'Ah.16g109160' => 'amhyb',
	'Ah.16g109170' => 'amhyb',
	'Ah.16g109370' => 'amhyb',
	'AL3G47720' => 'aly',
	'ATR0012G060' => 'atr',
	'ATR0026G029' => 'atr',
	'ATR0193G043' => 'atr',
	'ATR0561G076' => 'atr',
	'ATR0561G181' => 'atr',
	'ATR0568G014' => 'atr',
	'ATR0568G114' => 'atr',
	'ATR0620G039' => 'atr',
	'ATR0629G125' => 'atr',
	'ATR0661G583' => 'atr',
	'ATR0686G019' => 'atr',
	'ATR0693G232' => 'atr',
	'ATR0697G104' => 'atr',
	'ATR0789G146' => 'atr',
	'ATR0794G066' => 'atr',
	'ATR1127G127' => 'atr',
	'ATR1131G040' => 'atr',
	'ATR1134G004' => 'atr',
	'ATR1134G095' => 'atr',
	'ATR1152G110' => 'atr',
	'ATR1153G065' => 'atr',
	'Atru.chr3.2296' => 'acertr',
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	'SHI17926' => 'shi',
	'SHI18293' => 'shi',
	'SHI20489' => 'shi',
	'SHI20658' => 'shi',
	'SHI20663' => 'shi',
	'SHI21566' => 'shi',
	'SHI22547' => 'shi',
	'SHI22708' => 'shi',
	'SHI22709' => 'shi',
	'SHI22878' => 'shi',
	'SHI22879' => 'shi',
	'SHI23024' => 'shi',
	'SHI25053' => 'shi',
	'SHI25076' => 'shi',
	'SHI25116' => 'shi',
	'SHI25381' => 'shi',
	'SHI25535' => 'shi',
	'SHI25740' => 'shi',
	'SHI25991' => 'shi',
	'SHI26344' => 'shi',
	'SHI26345' => 'shi',
	'SHI27097' => 'shi',
	'SHI27140' => 'shi',
	'SHI27178' => 'shi',
	'SHI27207' => 'shi',
	'SHI27225' => 'shi',
	'SHI27734' => 'shi',
	'SHI27806' => 'shi',
	'SHI28576' => 'shi',
	'SHI29081' => 'shi',
	'SHI30038' => 'shi',
	'SHI30394' => 'shi',
	'SHI30652' => 'shi',
	'SHI32154' => 'shi',
	'SHI32205' => 'shi',
	'SHI32365' => 'shi',
	'SHI32439' => 'shi',
	'SHI32505' => 'shi',
	'SHI32626' => 'shi',
	'SHI32714' => 'shi',
	'SHI32715' => 'shi',
	'SHI32716' => 'shi',
	'SHI33118' => 'shi',
	'SHI33318' => 'shi',
	'SHI33373' => 'shi',
	'SHI33512' => 'shi',
	'SHI33625' => 'shi',
	'SHI34327' => 'shi',
	'SHI35604' => 'shi',
	'SHI36119' => 'shi',
	'SHI36120' => 'shi',
	'SHI44959' => 'shi',
	'SHI46406' => 'shi',
	'SHI48191' => 'shi',
	'SHI48192' => 'shi',
	'Solyc10g150111.1' => 'sly',
	'Solyc12g062340.2' => 'sly',
	'Sopen00g001750' => 'spe',
	'Sopen00g001820' => 'spe',
	'Sopen00g001830' => 'spe',
	'Sopen00g001890' => 'spe',
	'Sopen00g002240' => 'spe',
	'Sopen00g003950' => 'spe',
	'Sopen00g004130' => 'spe',
	'Sopen00g004810' => 'spe',
	'Sopen00g005120' => 'spe',
	'Sopen00g005190' => 'spe',
	'Sopen00g007000' => 'spe',
	'Sopen00g007210' => 'spe',
	'Sopen00g012840' => 'spe',
	'Sopen00g013060' => 'spe',
	'Sopen00g013610' => 'spe',
	'Sopen00g013630' => 'spe',
	'Sopen01g004610' => 'spe',
	'Sopen01g007660' => 'spe',
	'Sopen01g007750' => 'spe',
	'Sopen01g007760' => 'spe',
	'Sopen01g007770' => 'spe',
	'Sopen01g007860' => 'spe',
	'Sopen01g009130' => 'spe',
	'Sopen01g009820' => 'spe',
	'Sopen01g011240' => 'spe',
	'Sopen01g012740' => 'spe',
	'Sopen01g013840' => 'spe',
	'Sopen01g013850' => 'spe',
	'Sopen01g016140' => 'spe',
	'Sopen01g016150' => 'spe',
	'Sopen01g016830' => 'spe',
	'Sopen01g017260' => 'spe',
	'Sopen01g019000' => 'spe',
	'Sopen01g019690' => 'spe',
	'Sopen01g022160' => 'spe',
	'Sopen01g024000' => 'spe',
	'Sopen01g024670' => 'spe',
	'Sopen01g024770' => 'spe',
	'Sopen01g024900' => 'spe',
	'Sopen01g025130' => 'spe',
	'Sopen01g026370' => 'spe',
	'Sopen01g041640' => 'spe',
	'Sopen01g046930' => 'spe',
	'Sopen02g001360' => 'spe',
	'Sopen02g002010' => 'spe',
	'Sopen02g003600' => 'spe',
	'Sopen02g003730' => 'spe',
	'Sopen02g005430' => 'spe',
	'Sopen02g005510' => 'spe',
	'Sopen02g006840' => 'spe',
	'Sopen02g007390' => 'spe',
	'Sopen02g007420' => 'spe',
	'Sopen02g007540' => 'spe',
	'Sopen02g007920' => 'spe',
	'Sopen02g008960' => 'spe',
	'Sopen02g009450' => 'spe',
	'Sopen02g009460' => 'spe',
	'Sopen02g011320' => 'spe',
	'Sopen02g012680' => 'spe',
	'Sopen02g018090' => 'spe',
	'Sopen02g022140' => 'spe',
	'Sopen03g010330' => 'spe',
	'Sopen03g013130' => 'spe',
	'Sopen03g013180' => 'spe',
	'Sopen03g013230' => 'spe',
	'Sopen03g014110' => 'spe',
	'Sopen03g015260' => 'spe',
	'Sopen03g015790' => 'spe',
	'Sopen03g018360' => 'spe',
	'Sopen03g024470' => 'spe',
	'Sopen03g026800' => 'spe',
	'Sopen04g003180' => 'spe',
	'Sopen04g008260' => 'spe',
	'Sopen04g010320' => 'spe',
	'Sopen04g011020' => 'spe',
	'Sopen04g011200' => 'spe',
	'Sopen04g011280' => 'spe',
	'Sopen04g021910' => 'spe',
	'Sopen04g023870' => 'spe',
	'Sopen05g009880' => 'spe',
	'Sopen05g011580' => 'spe',
	'Sopen05g012230' => 'spe',
	'Sopen05g012500' => 'spe',
	'Sopen05g012560' => 'spe',
	'Sopen05g012570' => 'spe',
	'Sopen05g012760' => 'spe',
	'Sopen05g013710' => 'spe',
	'Sopen05g015050' => 'spe',
	'Sopen05g026090' => 'spe',
	'Sopen05g028020' => 'spe',
	'Sopen05g028610' => 'spe',
	'Sopen05g029300' => 'spe',
	'Sopen06g005520' => 'spe',
	'Sopen06g006750' => 'spe',
	'Sopen06g008160' => 'spe',
	'Sopen06g009120' => 'spe',
	'Sopen06g013550' => 'spe',
	'Sopen06g015340' => 'spe',
	'Sopen06g018330' => 'spe',
	'Sopen06g021630' => 'spe',
	'Sopen06g021650' => 'spe',
	'Sopen07g006730' => 'spe',
	'Sopen07g008690' => 'spe',
	'Sopen07g008700' => 'spe',
	'Sopen07g008720' => 'spe',
	'Sopen07g008870' => 'spe',
	'Sopen07g009400' => 'spe',
	'Sopen07g009410' => 'spe',
	'Sopen07g009470' => 'spe',
	'Sopen07g009540' => 'spe',
	'Sopen07g011060' => 'spe',
	'Sopen07g011110' => 'spe',
	'Sopen07g011820' => 'spe',
	'Sopen07g013260' => 'spe',
	'Sopen07g014740' => 'spe',
	'Sopen07g015160' => 'spe',
	'Sopen07g015230' => 'spe',
	'Sopen07g016240' => 'spe',
	'Sopen07g017200' => 'spe',
	'Sopen07g017810' => 'spe',
	'Sopen07g019030' => 'spe',
	'Sopen07g020430' => 'spe',
	'Sopen07g021010' => 'spe',
	'Sopen07g021340' => 'spe',
	'Sopen07g022950' => 'spe',
	'Sopen07g027860' => 'spe',
	'Sopen08g007820' => 'spe',
	'Sopen08g009330' => 'spe',
	'Sopen08g012310' => 'spe',
	'Sopen08g012560' => 'spe',
	'Sopen08g014040' => 'spe',
	'Sopen08g014650' => 'spe',
	'Sopen08g017020' => 'spe',
	'Sopen08g018300' => 'spe',
	'Sopen08g020530' => 'spe',
	'Sopen09g008590' => 'spe',
	'Sopen09g008780' => 'spe',
	'Sopen09g011540' => 'spe',
	'Sopen09g011920' => 'spe',
	'Sopen09g014170' => 'spe',
	'Sopen09g016520' => 'spe',
	'Sopen09g021030' => 'spe',
	'Sopen09g023110' => 'spe',
	'Sopen09g024750' => 'spe',
	'Sopen09g025230' => 'spe',
	'Sopen09g025600' => 'spe',
	'Sopen09g034660' => 'spe',
	'Sopen10g006700' => 'spe',
	'Sopen10g009130' => 'spe',
	'Sopen10g009140' => 'spe',
	'Sopen10g009560' => 'spe',
	'Sopen10g010340' => 'spe',
	'Sopen10g011040' => 'spe',
	'Sopen10g013650' => 'spe',
	'Sopen10g014130' => 'spe',
	'Sopen10g014140' => 'spe',
	'Sopen10g014760' => 'spe',
	'Sopen10g015080' => 'spe',
	'Sopen10g015830' => 'spe',
	'Sopen10g018240' => 'spe',
	'Sopen10g018300' => 'spe',
	'Sopen10g018350' => 'spe',
	'Sopen10g018460' => 'spe',
	'Sopen10g018670' => 'spe',
	'Sopen10g019040' => 'spe',
	'Sopen10g019330' => 'spe',
	'Sopen10g019340' => 'spe',
	'Sopen10g019360' => 'spe',
	'Sopen10g019370' => 'spe',
	'Sopen10g020620' => 'spe',
	'Sopen10g021550' => 'spe',
	'Sopen10g022160' => 'spe',
	'Sopen10g023540' => 'spe',
	'Sopen10g023570' => 'spe',
	'Sopen10g023580' => 'spe',
	'Sopen10g023600' => 'spe',
	'Sopen10g023620' => 'spe',
	'Sopen10g023650' => 'spe',
	'Sopen10g024800' => 'spe',
	'Sopen10g026170' => 'spe',
	'Sopen11g007790' => 'spe',
	'Sopen11g010170' => 'spe',
	'Sopen11g010580' => 'spe',
	'Sopen11g013420' => 'spe',
	'Sopen11g016330' => 'spe',
	'Sopen11g017010' => 'spe',
	'Sopen11g018110' => 'spe',
	'Sopen11g018960' => 'spe',
	'Sopen11g019000' => 'spe',
	'Sopen11g019970' => 'spe',
	'Sopen11g020340' => 'spe',
	'Sopen11g020970' => 'spe',
	'Sopen12g008510' => 'spe',
	'Sopen12g008910' => 'spe',
	'Sopen12g009010' => 'spe',
	'Sopen12g009120' => 'spe',
	'Sopen12g009340' => 'spe',
	'Sopen12g009580' => 'spe',
	'Sopen12g010190' => 'spe',
	'Sopen12g010320' => 'spe',
	'Sopen12g010370' => 'spe',
	'Sopen12g012140' => 'spe',
	'Sopen12g012700' => 'spe',
	'Sopen12g013490' => 'spe',
	'Sopen12g014290' => 'spe',
	'Sopen12g015060' => 'spe',
	'Sopen12g015610' => 'spe',
	'Sopen12g018380' => 'spe',
	'Sopen12g019150' => 'spe',
	'Sopen12g020560' => 'spe',
	'Sopen12g023320' => 'spe',
	'Sp3g24190' => 'spa',
	'Sp4g07270' => 'spa',
	'Sp4g07530' => 'spa',
	'Sp4g07670' => 'spa',
	'Sp6g09360' => 'spa',
	'Sp7g04180' => 'spa',
	'Sp7g04980' => 'spa',
	'Sp7g08200' => 'spa',
	'Sp7g09660' => 'spa',
	'SpUn0081_0010' => 'spa',
	'THA.LOC104803417' => 'tha',
	'THA.LOC104817059' => 'tha',
	'Thecc.01G188700' => 'tca',
	'Thecc.05G106700' => 'tca',
	'Thecc.06G068800' => 'tca',
	'Thecc.07G189100' => 'tca',
	'Thecc.09G172800' => 'tca',
	'Thhalv10023044m.g' => 'esa',
	'Thhalv10023881m.g' => 'esa',
	'Thhalv10024067m.g' => 'esa'
)
$gf_id = 'HOM05D000691'
$gf_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$gf_types_configuration = array(
	'HOMFAM' => array(
		'order' => '1',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	),
	'ORTHOFAM' => array(
		'order' => '2',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	)
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$allow_async_use = true
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D000691'
)
$data_identifier = 'HOM05D000691'
$data_type = 'gf_id'
$species_gene_counts = array(
	'amhyb' => (int) 18,
	'aly' => (int) 1,
	'atr' => (int) 21,
	'acertr' => (int) 1,
	'cqu' => (int) 90,
	'bol' => (int) 1,
	'can' => (int) 7,
	'cil' => (int) 3,
	'cla' => (int) 15,
	'col' => (int) 1,
	'cpa' => (int) 2,
	'csa' => (int) 7,
	'camsi' => (int) 10,
	'din' => (int) 1,
	'dzi' => (int) 2,
	'bvu' => (int) 18,
	'fve' => (int) 22,
	'gra' => (int) 1,
	'han' => (int) 7,
	'hma' => (int) 9,
	'sun' => (int) 16,
	'lonja' => (int) 46,
	'mes' => (int) 8,
	'mbi' => (int) 2,
	'cme' => (int) 6,
	'oeu' => (int) 110,
	'stu' => (int) 45,
	'ptr' => (int) 1,
	'rch' => (int) 1,
	'sci' => (int) 1,
	'sgi' => (int) 31,
	'sas' => (int) 1,
	'shi' => (int) 89,
	'sly' => (int) 2,
	'spe' => (int) 211,
	'spa' => (int) 10,
	'tha' => (int) 2,
	'tca' => (int) 5,
	'esa' => (int) 3
)
$gf_gene_species = 'esa'
$gf_gene_id = 'Thhalv10024067m.g'
$species_info = array(
	'species' => 'din',
	'common_name' => 'Davidia involucrata',
	'tax_id' => '16924',
	'version' => 'v1.0'
)
$local_species = 'din'
$disabled = ''
$selected = ''
$num_hits = (int) 0
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Analysis/custom_tree_creation.ctp, line 27
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933

Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]
Code Context
        $disabled    = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";

        $selected    = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";

        $num_hits    = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D000691',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '827',
		'num_species' => '39'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'gf_genes' => array(
		'Ah.01g012340' => 'amhyb',
		'Ah.01g013530' => 'amhyb',
		'Ah.03g143080' => 'amhyb',
		'Ah.06g186750' => 'amhyb',
		'Ah.06g186800' => 'amhyb',
		'Ah.07g200050' => 'amhyb',
		'Ah.08g209110' => 'amhyb',
		'Ah.09g229600' => 'amhyb',
		'Ah.09g229610' => 'amhyb',
		'Ah.10g026490' => 'amhyb',
		'Ah.12g065350' => 'amhyb',
		'Ah.13g069310' => 'amhyb',
		'Ah.14g080130' => 'amhyb',
		'Ah.14g081130' => 'amhyb',
		'Ah.14g081140' => 'amhyb',
		'Ah.16g109160' => 'amhyb',
		'Ah.16g109170' => 'amhyb',
		'Ah.16g109370' => 'amhyb',
		'AL3G47720' => 'aly',
		'ATR0012G060' => 'atr',
		'ATR0026G029' => 'atr',
		'ATR0193G043' => 'atr',
		'ATR0561G076' => 'atr',
		'ATR0561G181' => 'atr',
		'ATR0568G014' => 'atr',
		'ATR0568G114' => 'atr',
		'ATR0620G039' => 'atr',
		'ATR0629G125' => 'atr',
		'ATR0661G583' => 'atr',
		'ATR0686G019' => 'atr',
		'ATR0693G232' => 'atr',
		'ATR0697G104' => 'atr',
		'ATR0789G146' => 'atr',
		'ATR0794G066' => 'atr',
		'ATR1127G127' => 'atr',
		'ATR1131G040' => 'atr',
		'ATR1134G004' => 'atr',
		'ATR1134G095' => 'atr',
		'ATR1152G110' => 'atr',
		'ATR1153G065' => 'atr',
		'Atru.chr3.2296' => 'acertr',
		'AUR62000692' => 'cqu',
		'AUR62001473' => 'cqu',
		'AUR62001812' => 'cqu',
		'AUR62002706' => 'cqu',
		'AUR62003904' => 'cqu',
		'AUR62003905' => 'cqu',
		'AUR62004840' => 'cqu',
		'AUR62005160' => 'cqu',
		'AUR62005604' => 'cqu',
		'AUR62005891' => 'cqu',
		'AUR62007290' => 'cqu',
		'AUR62007502' => 'cqu',
		'AUR62007923' => 'cqu',
		'AUR62009972' => 'cqu',
		'AUR62010488' => 'cqu',
		'AUR62010643' => 'cqu',
		'AUR62012637' => 'cqu',
		'AUR62013492' => 'cqu',
		'AUR62014239' => 'cqu',
		'AUR62014878' => 'cqu',
		'AUR62015857' => 'cqu',
		'AUR62016224' => 'cqu',
		'AUR62017430' => 'cqu',
		'AUR62017467' => 'cqu',
		'AUR62018234' => 'cqu',
		'AUR62019060' => 'cqu',
		'AUR62019607' => 'cqu',
		'AUR62019661' => 'cqu',
		'AUR62022775' => 'cqu',
		'AUR62023603' => 'cqu',
		'AUR62024563' => 'cqu',
		'AUR62026199' => 'cqu',
		'AUR62026905' => 'cqu',
		'AUR62028639' => 'cqu',
		'AUR62029168' => 'cqu',
		'AUR62029551' => 'cqu',
		'AUR62029860' => 'cqu',
		'AUR62030164' => 'cqu',
		'AUR62031208' => 'cqu',
		'AUR62031287' => 'cqu',
		'AUR62031817' => 'cqu',
		'AUR62032126' => 'cqu',
		'AUR62032358' => 'cqu',
		'AUR62032884' => 'cqu',
		'AUR62032892' => 'cqu',
		'AUR62033082' => 'cqu',
		'AUR62033100' => 'cqu',
		'AUR62033255' => 'cqu',
		'AUR62033698' => 'cqu',
		'AUR62033757' => 'cqu',
		'AUR62034760' => 'cqu',
		'AUR62034860' => 'cqu',
		'AUR62035179' => 'cqu',
		'AUR62035881' => 'cqu',
		'AUR62036824' => 'cqu',
		'AUR62036876' => 'cqu',
		'AUR62037319' => 'cqu',
		'AUR62037362' => 'cqu',
		'AUR62037541' => 'cqu',
		'AUR62037853' => 'cqu',
		'AUR62038299' => 'cqu',
		'AUR62038563' => 'cqu',
		'AUR62038564' => 'cqu',
		'AUR62038594' => 'cqu',
		'AUR62038792' => 'cqu',
		'AUR62038947' => 'cqu',
		'AUR62039030' => 'cqu',
		'AUR62039231' => 'cqu',
		'AUR62039452' => 'cqu',
		'AUR62040334' => 'cqu',
		'AUR62040869' => 'cqu',
		'AUR62040870' => 'cqu',
		'AUR62040916' => 'cqu',
		'AUR62041199' => 'cqu',
		'AUR62041334' => 'cqu',
		'AUR62041608' => 'cqu',
		'AUR62041609' => 'cqu',
		'AUR62041833' => 'cqu',
		'AUR62041834' => 'cqu',
		'AUR62042054' => 'cqu',
		'AUR62042134' => 'cqu',
		'AUR62042236' => 'cqu',
		'AUR62042281' => 'cqu',
		'AUR62042593' => 'cqu',
		'AUR62042653' => 'cqu',
		'AUR62043025' => 'cqu',
		'AUR62043026' => 'cqu',
		'AUR62043063' => 'cqu',
		'AUR62043091' => 'cqu',
		'AUR62043320' => 'cqu',
		'BolC5t32558H' => 'bol',
		'CAN.G1036.12' => 'can',
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		'Sopen00g007000' => 'spe',
		'Sopen00g007210' => 'spe',
		'Sopen00g012840' => 'spe',
		'Sopen00g013060' => 'spe',
		'Sopen00g013610' => 'spe',
		'Sopen00g013630' => 'spe',
		'Sopen01g004610' => 'spe',
		'Sopen01g007660' => 'spe',
		'Sopen01g007750' => 'spe',
		'Sopen01g007760' => 'spe',
		'Sopen01g007770' => 'spe',
		'Sopen01g007860' => 'spe',
		'Sopen01g009130' => 'spe',
		'Sopen01g009820' => 'spe',
		'Sopen01g011240' => 'spe',
		'Sopen01g012740' => 'spe',
		'Sopen01g013840' => 'spe',
		'Sopen01g013850' => 'spe',
		'Sopen01g016140' => 'spe',
		'Sopen01g016150' => 'spe',
		'Sopen01g016830' => 'spe',
		'Sopen01g017260' => 'spe',
		'Sopen01g019000' => 'spe',
		'Sopen01g019690' => 'spe',
		'Sopen01g022160' => 'spe',
		'Sopen01g024000' => 'spe',
		'Sopen01g024670' => 'spe',
		'Sopen01g024770' => 'spe',
		'Sopen01g024900' => 'spe',
		'Sopen01g025130' => 'spe',
		'Sopen01g026370' => 'spe',
		'Sopen01g041640' => 'spe',
		'Sopen01g046930' => 'spe',
		'Sopen02g001360' => 'spe',
		'Sopen02g002010' => 'spe',
		'Sopen02g003600' => 'spe',
		'Sopen02g003730' => 'spe',
		'Sopen02g005430' => 'spe',
		'Sopen02g005510' => 'spe',
		'Sopen02g006840' => 'spe',
		'Sopen02g007390' => 'spe',
		'Sopen02g007420' => 'spe',
		'Sopen02g007540' => 'spe',
		'Sopen02g007920' => 'spe',
		'Sopen02g008960' => 'spe',
		'Sopen02g009450' => 'spe',
		'Sopen02g009460' => 'spe',
		'Sopen02g011320' => 'spe',
		'Sopen02g012680' => 'spe',
		'Sopen02g018090' => 'spe',
		'Sopen02g022140' => 'spe',
		'Sopen03g010330' => 'spe',
		'Sopen03g013130' => 'spe',
		'Sopen03g013180' => 'spe',
		'Sopen03g013230' => 'spe',
		'Sopen03g014110' => 'spe',
		'Sopen03g015260' => 'spe',
		'Sopen03g015790' => 'spe',
		'Sopen03g018360' => 'spe',
		'Sopen03g024470' => 'spe',
		'Sopen03g026800' => 'spe',
		'Sopen04g003180' => 'spe',
		'Sopen04g008260' => 'spe',
		'Sopen04g010320' => 'spe',
		'Sopen04g011020' => 'spe',
		'Sopen04g011200' => 'spe',
		'Sopen04g011280' => 'spe',
		'Sopen04g021910' => 'spe',
		'Sopen04g023870' => 'spe',
		'Sopen05g009880' => 'spe',
		'Sopen05g011580' => 'spe',
		'Sopen05g012230' => 'spe',
		'Sopen05g012500' => 'spe',
		'Sopen05g012560' => 'spe',
		'Sopen05g012570' => 'spe',
		'Sopen05g012760' => 'spe',
		'Sopen05g013710' => 'spe',
		'Sopen05g015050' => 'spe',
		'Sopen05g026090' => 'spe',
		'Sopen05g028020' => 'spe',
		'Sopen05g028610' => 'spe',
		'Sopen05g029300' => 'spe',
		'Sopen06g005520' => 'spe',
		'Sopen06g006750' => 'spe',
		'Sopen06g008160' => 'spe',
		'Sopen06g009120' => 'spe',
		'Sopen06g013550' => 'spe',
		'Sopen06g015340' => 'spe',
		'Sopen06g018330' => 'spe',
		'Sopen06g021630' => 'spe',
		'Sopen06g021650' => 'spe',
		'Sopen07g006730' => 'spe',
		'Sopen07g008690' => 'spe',
		'Sopen07g008700' => 'spe',
		'Sopen07g008720' => 'spe',
		'Sopen07g008870' => 'spe',
		'Sopen07g009400' => 'spe',
		'Sopen07g009410' => 'spe',
		'Sopen07g009470' => 'spe',
		'Sopen07g009540' => 'spe',
		'Sopen07g011060' => 'spe',
		'Sopen07g011110' => 'spe',
		'Sopen07g011820' => 'spe',
		'Sopen07g013260' => 'spe',
		'Sopen07g014740' => 'spe',
		'Sopen07g015160' => 'spe',
		'Sopen07g015230' => 'spe',
		'Sopen07g016240' => 'spe',
		'Sopen07g017200' => 'spe',
		'Sopen07g017810' => 'spe',
		'Sopen07g019030' => 'spe',
		'Sopen07g020430' => 'spe',
		'Sopen07g021010' => 'spe',
		'Sopen07g021340' => 'spe',
		'Sopen07g022950' => 'spe',
		'Sopen07g027860' => 'spe',
		'Sopen08g007820' => 'spe',
		'Sopen08g009330' => 'spe',
		'Sopen08g012310' => 'spe',
		'Sopen08g012560' => 'spe',
		'Sopen08g014040' => 'spe',
		'Sopen08g014650' => 'spe',
		'Sopen08g017020' => 'spe',
		'Sopen08g018300' => 'spe',
		'Sopen08g020530' => 'spe',
		'Sopen09g008590' => 'spe',
		'Sopen09g008780' => 'spe',
		'Sopen09g011540' => 'spe',
		'Sopen09g011920' => 'spe',
		'Sopen09g014170' => 'spe',
		'Sopen09g016520' => 'spe',
		'Sopen09g021030' => 'spe',
		'Sopen09g023110' => 'spe',
		'Sopen09g024750' => 'spe',
		'Sopen09g025230' => 'spe',
		'Sopen09g025600' => 'spe',
		'Sopen09g034660' => 'spe',
		'Sopen10g006700' => 'spe',
		'Sopen10g009130' => 'spe',
		'Sopen10g009140' => 'spe',
		'Sopen10g009560' => 'spe',
		'Sopen10g010340' => 'spe',
		'Sopen10g011040' => 'spe',
		'Sopen10g013650' => 'spe',
		'Sopen10g014130' => 'spe',
		'Sopen10g014140' => 'spe',
		'Sopen10g014760' => 'spe',
		'Sopen10g015080' => 'spe',
		'Sopen10g015830' => 'spe',
		'Sopen10g018240' => 'spe',
		'Sopen10g018300' => 'spe',
		'Sopen10g018350' => 'spe',
		'Sopen10g018460' => 'spe',
		'Sopen10g018670' => 'spe',
		'Sopen10g019040' => 'spe',
		'Sopen10g019330' => 'spe',
		'Sopen10g019340' => 'spe',
		'Sopen10g019360' => 'spe',
		'Sopen10g019370' => 'spe',
		'Sopen10g020620' => 'spe',
		'Sopen10g021550' => 'spe',
		'Sopen10g022160' => 'spe',
		'Sopen10g023540' => 'spe',
		'Sopen10g023570' => 'spe',
		'Sopen10g023580' => 'spe',
		'Sopen10g023600' => 'spe',
		'Sopen10g023620' => 'spe',
		'Sopen10g023650' => 'spe',
		'Sopen10g024800' => 'spe',
		'Sopen10g026170' => 'spe',
		'Sopen11g007790' => 'spe',
		'Sopen11g010170' => 'spe',
		'Sopen11g010580' => 'spe',
		'Sopen11g013420' => 'spe',
		'Sopen11g016330' => 'spe',
		'Sopen11g017010' => 'spe',
		'Sopen11g018110' => 'spe',
		'Sopen11g018960' => 'spe',
		'Sopen11g019000' => 'spe',
		'Sopen11g019970' => 'spe',
		'Sopen11g020340' => 'spe',
		'Sopen11g020970' => 'spe',
		'Sopen12g008510' => 'spe',
		'Sopen12g008910' => 'spe',
		'Sopen12g009010' => 'spe',
		'Sopen12g009120' => 'spe',
		'Sopen12g009340' => 'spe',
		'Sopen12g009580' => 'spe',
		'Sopen12g010190' => 'spe',
		'Sopen12g010320' => 'spe',
		'Sopen12g010370' => 'spe',
		'Sopen12g012140' => 'spe',
		'Sopen12g012700' => 'spe',
		'Sopen12g013490' => 'spe',
		'Sopen12g014290' => 'spe',
		'Sopen12g015060' => 'spe',
		'Sopen12g015610' => 'spe',
		'Sopen12g018380' => 'spe',
		'Sopen12g019150' => 'spe',
		'Sopen12g020560' => 'spe',
		'Sopen12g023320' => 'spe',
		'Sp3g24190' => 'spa',
		'Sp4g07270' => 'spa',
		'Sp4g07530' => 'spa',
		'Sp4g07670' => 'spa',
		'Sp6g09360' => 'spa',
		'Sp7g04180' => 'spa',
		'Sp7g04980' => 'spa',
		'Sp7g08200' => 'spa',
		'Sp7g09660' => 'spa',
		'SpUn0081_0010' => 'spa',
		'THA.LOC104803417' => 'tha',
		'THA.LOC104817059' => 'tha',
		'Thecc.01G188700' => 'tca',
		'Thecc.05G106700' => 'tca',
		'Thecc.06G068800' => 'tca',
		'Thecc.07G189100' => 'tca',
		'Thecc.09G172800' => 'tca',
		'Thhalv10023044m.g' => 'esa',
		'Thhalv10023881m.g' => 'esa',
		'Thhalv10024067m.g' => 'esa'
	),
	'gf_id' => 'HOM05D000691',
	'gf_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'gf_types_configuration' => array(
		'HOMFAM' => array(
			'order' => '1',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		),
		'ORTHOFAM' => array(
			'order' => '2',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		)
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'allow_async_use' => true,
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D000691'
	),
	'data_identifier' => 'HOM05D000691',
	'data_type' => 'gf_id'
)
$sidebar_info = array(
	'gf_id' => 'HOM05D000691',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '827',
	'num_species' => '39'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$gf_genes = array(
	'Ah.01g012340' => 'amhyb',
	'Ah.01g013530' => 'amhyb',
	'Ah.03g143080' => 'amhyb',
	'Ah.06g186750' => 'amhyb',
	'Ah.06g186800' => 'amhyb',
	'Ah.07g200050' => 'amhyb',
	'Ah.08g209110' => 'amhyb',
	'Ah.09g229600' => 'amhyb',
	'Ah.09g229610' => 'amhyb',
	'Ah.10g026490' => 'amhyb',
	'Ah.12g065350' => 'amhyb',
	'Ah.13g069310' => 'amhyb',
	'Ah.14g080130' => 'amhyb',
	'Ah.14g081130' => 'amhyb',
	'Ah.14g081140' => 'amhyb',
	'Ah.16g109160' => 'amhyb',
	'Ah.16g109170' => 'amhyb',
	'Ah.16g109370' => 'amhyb',
	'AL3G47720' => 'aly',
	'ATR0012G060' => 'atr',
	'ATR0026G029' => 'atr',
	'ATR0193G043' => 'atr',
	'ATR0561G076' => 'atr',
	'ATR0561G181' => 'atr',
	'ATR0568G014' => 'atr',
	'ATR0568G114' => 'atr',
	'ATR0620G039' => 'atr',
	'ATR0629G125' => 'atr',
	'ATR0661G583' => 'atr',
	'ATR0686G019' => 'atr',
	'ATR0693G232' => 'atr',
	'ATR0697G104' => 'atr',
	'ATR0789G146' => 'atr',
	'ATR0794G066' => 'atr',
	'ATR1127G127' => 'atr',
	'ATR1131G040' => 'atr',
	'ATR1134G004' => 'atr',
	'ATR1134G095' => 'atr',
	'ATR1152G110' => 'atr',
	'ATR1153G065' => 'atr',
	'Atru.chr3.2296' => 'acertr',
	'AUR62000692' => 'cqu',
	'AUR62001473' => 'cqu',
	'AUR62001812' => 'cqu',
	'AUR62002706' => 'cqu',
	'AUR62003904' => 'cqu',
	'AUR62003905' => 'cqu',
	'AUR62004840' => 'cqu',
	'AUR62005160' => 'cqu',
	'AUR62005604' => 'cqu',
	'AUR62005891' => 'cqu',
	'AUR62007290' => 'cqu',
	'AUR62007502' => 'cqu',
	'AUR62007923' => 'cqu',
	'AUR62009972' => 'cqu',
	'AUR62010488' => 'cqu',
	'AUR62010643' => 'cqu',
	'AUR62012637' => 'cqu',
	'AUR62013492' => 'cqu',
	'AUR62014239' => 'cqu',
	'AUR62014878' => 'cqu',
	'AUR62015857' => 'cqu',
	'AUR62016224' => 'cqu',
	'AUR62017430' => 'cqu',
	'AUR62017467' => 'cqu',
	'AUR62018234' => 'cqu',
	'AUR62019060' => 'cqu',
	'AUR62019607' => 'cqu',
	'AUR62019661' => 'cqu',
	'AUR62022775' => 'cqu',
	'AUR62023603' => 'cqu',
	'AUR62024563' => 'cqu',
	'AUR62026199' => 'cqu',
	'AUR62026905' => 'cqu',
	'AUR62028639' => 'cqu',
	'AUR62029168' => 'cqu',
	'AUR62029551' => 'cqu',
	'AUR62029860' => 'cqu',
	'AUR62030164' => 'cqu',
	'AUR62031208' => 'cqu',
	'AUR62031287' => 'cqu',
	'AUR62031817' => 'cqu',
	'AUR62032126' => 'cqu',
	'AUR62032358' => 'cqu',
	'AUR62032884' => 'cqu',
	'AUR62032892' => 'cqu',
	'AUR62033082' => 'cqu',
	'AUR62033100' => 'cqu',
	'AUR62033255' => 'cqu',
	'AUR62033698' => 'cqu',
	'AUR62033757' => 'cqu',
	'AUR62034760' => 'cqu',
	'AUR62034860' => 'cqu',
	'AUR62035179' => 'cqu',
	'AUR62035881' => 'cqu',
	'AUR62036824' => 'cqu',
	'AUR62036876' => 'cqu',
	'AUR62037319' => 'cqu',
	'AUR62037362' => 'cqu',
	'AUR62037541' => 'cqu',
	'AUR62037853' => 'cqu',
	'AUR62038299' => 'cqu',
	'AUR62038563' => 'cqu',
	'AUR62038564' => 'cqu',
	'AUR62038594' => 'cqu',
	'AUR62038792' => 'cqu',
	'AUR62038947' => 'cqu',
	'AUR62039030' => 'cqu',
	'AUR62039231' => 'cqu',
	'AUR62039452' => 'cqu',
	'AUR62040334' => 'cqu',
	'AUR62040869' => 'cqu',
	'AUR62040870' => 'cqu',
	'AUR62040916' => 'cqu',
	'AUR62041199' => 'cqu',
	'AUR62041334' => 'cqu',
	'AUR62041608' => 'cqu',
	'AUR62041609' => 'cqu',
	'AUR62041833' => 'cqu',
	'AUR62041834' => 'cqu',
	'AUR62042054' => 'cqu',
	'AUR62042134' => 'cqu',
	'AUR62042236' => 'cqu',
	'AUR62042281' => 'cqu',
	'AUR62042593' => 'cqu',
	'AUR62042653' => 'cqu',
	'AUR62043025' => 'cqu',
	'AUR62043026' => 'cqu',
	'AUR62043063' => 'cqu',
	'AUR62043091' => 'cqu',
	'AUR62043320' => 'cqu',
	'BolC5t32558H' => 'bol',
	'CAN.G1036.12' => 'can',
	'CAN.G1432.23' => 'can',
	'CAN.G159.19' => 'can',
	'CAN.G4114.1' => 'can',
	'CAN.G492.85' => 'can',
	'CAN.G500.95' => 'can',
	'CAN.G93.31' => 'can',
	'CiPaw.04G054900' => 'cil',
	'CiPaw.05G045400' => 'cil',
	'CiPaw.15G094100' => 'cil',
	'ClCG00G000700' => 'cla',
	'ClCG00G000780' => 'cla',
	'ClCG01G012280' => 'cla',
	'ClCG02G006140' => 'cla',
	'ClCG02G009810' => 'cla',
	'ClCG03G010170' => 'cla',
	'ClCG03G010260' => 'cla',
	'ClCG04G000770' => 'cla',
	'ClCG05G013980' => 'cla',
	'ClCG06G009110' => 'cla',
	'ClCG06G009120' => 'cla',
	'ClCG08G002190' => 'cla',
	'ClCG09G013830' => 'cla',
	'ClCG10G006760' => 'cla',
	'ClCG11G007310' => 'cla',
	'COL.COLO4_16141' => 'col',
	'Cpa.g.sc202.2' => 'cpa',
	'Cpa.g.sc76.18' => 'cpa',
	'CsaV3_1G031080' => 'csa',
	'CsaV3_4G011870' => 'csa',
	'CsaV3_4G014860' => 'csa',
	'CsaV3_4G021860' => 'csa',
	'CsaV3_6G009880' => 'csa',
	'CsaV3_7G021240' => 'csa',
	'CsaV3_UNG240600' => 'csa',
	'CSS0003516' => 'camsi',
	'CSS0013023' => 'camsi',
	'CSS0017680' => 'camsi',
	'CSS0018551' => 'camsi',
	'CSS0026792' => 'camsi',
	'CSS0028271' => 'camsi',
	'CSS0033603' => 'camsi',
	'CSS0040789' => 'camsi',
	'CSS0045068' => 'camsi',
	'CSS0045803' => 'camsi',
	'Dinv10528' => 'din',
	'Duzib116G0875' => 'dzi',
	'Duzib128G0055' => 'dzi',
	'EL10Ac1g02377' => 'bvu',
	'EL10Ac1g02378' => 'bvu',
	'EL10Ac2g03486' => 'bvu',
	'EL10Ac2g03487' => 'bvu',
	'EL10Ac3g05722' => 'bvu',
	'EL10Ac3g06186' => 'bvu',
	'EL10Ac5g11258' => 'bvu',
	'EL10Ac6g13831' => 'bvu',
	'EL10Ac6g14162' => 'bvu',
	'EL10Ac6g14316' => 'bvu',
	'EL10Ac6g14317' => 'bvu',
	'EL10Ac6g14588' => 'bvu',
	'EL10Ac7g16302' => 'bvu',
	'EL10Ac7g16543' => 'bvu',
	'EL10Ac8g18762' => 'bvu',
	'EL10Ac9g20847' => 'bvu',
	'EL10As7g23731' => 'bvu',
	'EL10As7g23732' => 'bvu',
	'FvH4_1g23713' => 'fve',
	'FvH4_2g00261' => 'fve',
	'FvH4_2g00262' => 'fve',
	'FvH4_2g15681' => 'fve',
	'FvH4_2g17851' => 'fve',
	'FvH4_3g10531' => 'fve',
	'FvH4_3g33536' => 'fve',
	'FvH4_4g03471' => 'fve',
	'FvH4_4g19351' => 'fve',
	'FvH4_4g34281' => 'fve',
	'FvH4_5g03811' => 'fve',
	'FvH4_5g03812' => 'fve',
	'FvH4_5g11822' => 'fve',
	'FvH4_5g31701' => 'fve',
	'FvH4_6g12161' => 'fve',
	'FvH4_6g15222' => 'fve',
	'FvH4_6g15223' => 'fve',
	'FvH4_6g19301' => 'fve',
	'FvH4_6g33011' => 'fve',
	'FvH4_6g50161' => 'fve',
	'FvH4_7g04123' => 'fve',
	'FvH4_c7g00010' => 'fve',
	'Gorai.012G165300' => 'gra',
	'HanXRQChr00c0452g0574871' => 'han',
	'HanXRQChr01g0029471' => 'han',
	'HanXRQChr05g0133501' => 'han',
	'HanXRQChr10g0280141' => 'han',
	'HanXRQChr10g0280631' => 'han',
	'HanXRQChr13g0409991' => 'han',
	'HanXRQChr15g0468361' => 'han',
	'Hma1.2p1_0021F.1_g014270' => 'hma',
	'Hma1.2p1_0026F.1_g016730' => 'hma',
	'Hma1.2p1_0177F.1_g077930' => 'hma',
	'Hma1.2p1_0370F.1_g137540' => 'hma',
	'Hma1.2p1_0637F.1_g193600' => 'hma',
	'Hma1.2p1_1045F.1_g251360' => 'hma',
	'Hma1.2p1_1168F.1_g263120' => 'hma',
	'Hma1.2p1_1640F.1_g295040' => 'hma',
	'Hma1.2p1_2467F.1_g322660' => 'hma',
	'Hund01785' => 'sun',
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	'Sopen10g018300' => 'spe',
	'Sopen10g018350' => 'spe',
	'Sopen10g018460' => 'spe',
	'Sopen10g018670' => 'spe',
	'Sopen10g019040' => 'spe',
	'Sopen10g019330' => 'spe',
	'Sopen10g019340' => 'spe',
	'Sopen10g019360' => 'spe',
	'Sopen10g019370' => 'spe',
	'Sopen10g020620' => 'spe',
	'Sopen10g021550' => 'spe',
	'Sopen10g022160' => 'spe',
	'Sopen10g023540' => 'spe',
	'Sopen10g023570' => 'spe',
	'Sopen10g023580' => 'spe',
	'Sopen10g023600' => 'spe',
	'Sopen10g023620' => 'spe',
	'Sopen10g023650' => 'spe',
	'Sopen10g024800' => 'spe',
	'Sopen10g026170' => 'spe',
	'Sopen11g007790' => 'spe',
	'Sopen11g010170' => 'spe',
	'Sopen11g010580' => 'spe',
	'Sopen11g013420' => 'spe',
	'Sopen11g016330' => 'spe',
	'Sopen11g017010' => 'spe',
	'Sopen11g018110' => 'spe',
	'Sopen11g018960' => 'spe',
	'Sopen11g019000' => 'spe',
	'Sopen11g019970' => 'spe',
	'Sopen11g020340' => 'spe',
	'Sopen11g020970' => 'spe',
	'Sopen12g008510' => 'spe',
	'Sopen12g008910' => 'spe',
	'Sopen12g009010' => 'spe',
	'Sopen12g009120' => 'spe',
	'Sopen12g009340' => 'spe',
	'Sopen12g009580' => 'spe',
	'Sopen12g010190' => 'spe',
	'Sopen12g010320' => 'spe',
	'Sopen12g010370' => 'spe',
	'Sopen12g012140' => 'spe',
	'Sopen12g012700' => 'spe',
	'Sopen12g013490' => 'spe',
	'Sopen12g014290' => 'spe',
	'Sopen12g015060' => 'spe',
	'Sopen12g015610' => 'spe',
	'Sopen12g018380' => 'spe',
	'Sopen12g019150' => 'spe',
	'Sopen12g020560' => 'spe',
	'Sopen12g023320' => 'spe',
	'Sp3g24190' => 'spa',
	'Sp4g07270' => 'spa',
	'Sp4g07530' => 'spa',
	'Sp4g07670' => 'spa',
	'Sp6g09360' => 'spa',
	'Sp7g04180' => 'spa',
	'Sp7g04980' => 'spa',
	'Sp7g08200' => 'spa',
	'Sp7g09660' => 'spa',
	'SpUn0081_0010' => 'spa',
	'THA.LOC104803417' => 'tha',
	'THA.LOC104817059' => 'tha',
	'Thecc.01G188700' => 'tca',
	'Thecc.05G106700' => 'tca',
	'Thecc.06G068800' => 'tca',
	'Thecc.07G189100' => 'tca',
	'Thecc.09G172800' => 'tca',
	'Thhalv10023044m.g' => 'esa',
	'Thhalv10023881m.g' => 'esa',
	'Thhalv10024067m.g' => 'esa'
)
$gf_id = 'HOM05D000691'
$gf_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$gf_types_configuration = array(
	'HOMFAM' => array(
		'order' => '1',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	),
	'ORTHOFAM' => array(
		'order' => '2',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	)
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$allow_async_use = true
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D000691'
)
$data_identifier = 'HOM05D000691'
$data_type = 'gf_id'
$species_gene_counts = array(
	'amhyb' => (int) 18,
	'aly' => (int) 1,
	'atr' => (int) 21,
	'acertr' => (int) 1,
	'cqu' => (int) 90,
	'bol' => (int) 1,
	'can' => (int) 7,
	'cil' => (int) 3,
	'cla' => (int) 15,
	'col' => (int) 1,
	'cpa' => (int) 2,
	'csa' => (int) 7,
	'camsi' => (int) 10,
	'din' => (int) 1,
	'dzi' => (int) 2,
	'bvu' => (int) 18,
	'fve' => (int) 22,
	'gra' => (int) 1,
	'han' => (int) 7,
	'hma' => (int) 9,
	'sun' => (int) 16,
	'lonja' => (int) 46,
	'mes' => (int) 8,
	'mbi' => (int) 2,
	'cme' => (int) 6,
	'oeu' => (int) 110,
	'stu' => (int) 45,
	'ptr' => (int) 1,
	'rch' => (int) 1,
	'sci' => (int) 1,
	'sgi' => (int) 31,
	'sas' => (int) 1,
	'shi' => (int) 89,
	'sly' => (int) 2,
	'spe' => (int) 211,
	'spa' => (int) 10,
	'tha' => (int) 2,
	'tca' => (int) 5,
	'esa' => (int) 3
)
$gf_gene_species = 'esa'
$gf_gene_id = 'Thhalv10024067m.g'
$species_info = array(
	'species' => 'dzi',
	'common_name' => 'Durio zibethinus',
	'tax_id' => '66656',
	'version' => 'Duzib1.0'
)
$local_species = 'dzi'
$disabled = ''
$selected = ''
$num_hits = (int) 1
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Analysis/custom_tree_creation.ctp, line 27
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933

Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]
Code Context
        $disabled    = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";

        $selected    = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";

        $num_hits    = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D000691',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '827',
		'num_species' => '39'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'gf_genes' => array(
		'Ah.01g012340' => 'amhyb',
		'Ah.01g013530' => 'amhyb',
		'Ah.03g143080' => 'amhyb',
		'Ah.06g186750' => 'amhyb',
		'Ah.06g186800' => 'amhyb',
		'Ah.07g200050' => 'amhyb',
		'Ah.08g209110' => 'amhyb',
		'Ah.09g229600' => 'amhyb',
		'Ah.09g229610' => 'amhyb',
		'Ah.10g026490' => 'amhyb',
		'Ah.12g065350' => 'amhyb',
		'Ah.13g069310' => 'amhyb',
		'Ah.14g080130' => 'amhyb',
		'Ah.14g081130' => 'amhyb',
		'Ah.14g081140' => 'amhyb',
		'Ah.16g109160' => 'amhyb',
		'Ah.16g109170' => 'amhyb',
		'Ah.16g109370' => 'amhyb',
		'AL3G47720' => 'aly',
		'ATR0012G060' => 'atr',
		'ATR0026G029' => 'atr',
		'ATR0193G043' => 'atr',
		'ATR0561G076' => 'atr',
		'ATR0561G181' => 'atr',
		'ATR0568G014' => 'atr',
		'ATR0568G114' => 'atr',
		'ATR0620G039' => 'atr',
		'ATR0629G125' => 'atr',
		'ATR0661G583' => 'atr',
		'ATR0686G019' => 'atr',
		'ATR0693G232' => 'atr',
		'ATR0697G104' => 'atr',
		'ATR0789G146' => 'atr',
		'ATR0794G066' => 'atr',
		'ATR1127G127' => 'atr',
		'ATR1131G040' => 'atr',
		'ATR1134G004' => 'atr',
		'ATR1134G095' => 'atr',
		'ATR1152G110' => 'atr',
		'ATR1153G065' => 'atr',
		'Atru.chr3.2296' => 'acertr',
		'AUR62000692' => 'cqu',
		'AUR62001473' => 'cqu',
		'AUR62001812' => 'cqu',
		'AUR62002706' => 'cqu',
		'AUR62003904' => 'cqu',
		'AUR62003905' => 'cqu',
		'AUR62004840' => 'cqu',
		'AUR62005160' => 'cqu',
		'AUR62005604' => 'cqu',
		'AUR62005891' => 'cqu',
		'AUR62007290' => 'cqu',
		'AUR62007502' => 'cqu',
		'AUR62007923' => 'cqu',
		'AUR62009972' => 'cqu',
		'AUR62010488' => 'cqu',
		'AUR62010643' => 'cqu',
		'AUR62012637' => 'cqu',
		'AUR62013492' => 'cqu',
		'AUR62014239' => 'cqu',
		'AUR62014878' => 'cqu',
		'AUR62015857' => 'cqu',
		'AUR62016224' => 'cqu',
		'AUR62017430' => 'cqu',
		'AUR62017467' => 'cqu',
		'AUR62018234' => 'cqu',
		'AUR62019060' => 'cqu',
		'AUR62019607' => 'cqu',
		'AUR62019661' => 'cqu',
		'AUR62022775' => 'cqu',
		'AUR62023603' => 'cqu',
		'AUR62024563' => 'cqu',
		'AUR62026199' => 'cqu',
		'AUR62026905' => 'cqu',
		'AUR62028639' => 'cqu',
		'AUR62029168' => 'cqu',
		'AUR62029551' => 'cqu',
		'AUR62029860' => 'cqu',
		'AUR62030164' => 'cqu',
		'AUR62031208' => 'cqu',
		'AUR62031287' => 'cqu',
		'AUR62031817' => 'cqu',
		'AUR62032126' => 'cqu',
		'AUR62032358' => 'cqu',
		'AUR62032884' => 'cqu',
		'AUR62032892' => 'cqu',
		'AUR62033082' => 'cqu',
		'AUR62033100' => 'cqu',
		'AUR62033255' => 'cqu',
		'AUR62033698' => 'cqu',
		'AUR62033757' => 'cqu',
		'AUR62034760' => 'cqu',
		'AUR62034860' => 'cqu',
		'AUR62035179' => 'cqu',
		'AUR62035881' => 'cqu',
		'AUR62036824' => 'cqu',
		'AUR62036876' => 'cqu',
		'AUR62037319' => 'cqu',
		'AUR62037362' => 'cqu',
		'AUR62037541' => 'cqu',
		'AUR62037853' => 'cqu',
		'AUR62038299' => 'cqu',
		'AUR62038563' => 'cqu',
		'AUR62038564' => 'cqu',
		'AUR62038594' => 'cqu',
		'AUR62038792' => 'cqu',
		'AUR62038947' => 'cqu',
		'AUR62039030' => 'cqu',
		'AUR62039231' => 'cqu',
		'AUR62039452' => 'cqu',
		'AUR62040334' => 'cqu',
		'AUR62040869' => 'cqu',
		'AUR62040870' => 'cqu',
		'AUR62040916' => 'cqu',
		'AUR62041199' => 'cqu',
		'AUR62041334' => 'cqu',
		'AUR62041608' => 'cqu',
		'AUR62041609' => 'cqu',
		'AUR62041833' => 'cqu',
		'AUR62041834' => 'cqu',
		'AUR62042054' => 'cqu',
		'AUR62042134' => 'cqu',
		'AUR62042236' => 'cqu',
		'AUR62042281' => 'cqu',
		'AUR62042593' => 'cqu',
		'AUR62042653' => 'cqu',
		'AUR62043025' => 'cqu',
		'AUR62043026' => 'cqu',
		'AUR62043063' => 'cqu',
		'AUR62043091' => 'cqu',
		'AUR62043320' => 'cqu',
		'BolC5t32558H' => 'bol',
		'CAN.G1036.12' => 'can',
		'CAN.G1432.23' => 'can',
		'CAN.G159.19' => 'can',
		'CAN.G4114.1' => 'can',
		'CAN.G492.85' => 'can',
		'CAN.G500.95' => 'can',
		'CAN.G93.31' => 'can',
		'CiPaw.04G054900' => 'cil',
		'CiPaw.05G045400' => 'cil',
		'CiPaw.15G094100' => 'cil',
		'ClCG00G000700' => 'cla',
		'ClCG00G000780' => 'cla',
		'ClCG01G012280' => 'cla',
		'ClCG02G006140' => 'cla',
		'ClCG02G009810' => 'cla',
		'ClCG03G010170' => 'cla',
		'ClCG03G010260' => 'cla',
		'ClCG04G000770' => 'cla',
		'ClCG05G013980' => 'cla',
		'ClCG06G009110' => 'cla',
		'ClCG06G009120' => 'cla',
		'ClCG08G002190' => 'cla',
		'ClCG09G013830' => 'cla',
		'ClCG10G006760' => 'cla',
		'ClCG11G007310' => 'cla',
		'COL.COLO4_16141' => 'col',
		'Cpa.g.sc202.2' => 'cpa',
		'Cpa.g.sc76.18' => 'cpa',
		'CsaV3_1G031080' => 'csa',
		'CsaV3_4G011870' => 'csa',
		'CsaV3_4G014860' => 'csa',
		'CsaV3_4G021860' => 'csa',
		'CsaV3_6G009880' => 'csa',
		'CsaV3_7G021240' => 'csa',
		'CsaV3_UNG240600' => 'csa',
		'CSS0003516' => 'camsi',
		'CSS0013023' => 'camsi',
		'CSS0017680' => 'camsi',
		'CSS0018551' => 'camsi',
		'CSS0026792' => 'camsi',
		'CSS0028271' => 'camsi',
		'CSS0033603' => 'camsi',
		'CSS0040789' => 'camsi',
		'CSS0045068' => 'camsi',
		'CSS0045803' => 'camsi',
		'Dinv10528' => 'din',
		'Duzib116G0875' => 'dzi',
		'Duzib128G0055' => 'dzi',
		'EL10Ac1g02377' => 'bvu',
		'EL10Ac1g02378' => 'bvu',
		'EL10Ac2g03486' => 'bvu',
		'EL10Ac2g03487' => 'bvu',
		'EL10Ac3g05722' => 'bvu',
		'EL10Ac3g06186' => 'bvu',
		'EL10Ac5g11258' => 'bvu',
		'EL10Ac6g13831' => 'bvu',
		'EL10Ac6g14162' => 'bvu',
		'EL10Ac6g14316' => 'bvu',
		'EL10Ac6g14317' => 'bvu',
		'EL10Ac6g14588' => 'bvu',
		'EL10Ac7g16302' => 'bvu',
		'EL10Ac7g16543' => 'bvu',
		'EL10Ac8g18762' => 'bvu',
		'EL10Ac9g20847' => 'bvu',
		'EL10As7g23731' => 'bvu',
		'EL10As7g23732' => 'bvu',
		'FvH4_1g23713' => 'fve',
		'FvH4_2g00261' => 'fve',
		'FvH4_2g00262' => 'fve',
		'FvH4_2g15681' => 'fve',
		'FvH4_2g17851' => 'fve',
		'FvH4_3g10531' => 'fve',
		'FvH4_3g33536' => 'fve',
		'FvH4_4g03471' => 'fve',
		'FvH4_4g19351' => 'fve',
		'FvH4_4g34281' => 'fve',
		'FvH4_5g03811' => 'fve',
		'FvH4_5g03812' => 'fve',
		'FvH4_5g11822' => 'fve',
		'FvH4_5g31701' => 'fve',
		'FvH4_6g12161' => 'fve',
		'FvH4_6g15222' => 'fve',
		'FvH4_6g15223' => 'fve',
		'FvH4_6g19301' => 'fve',
		'FvH4_6g33011' => 'fve',
		'FvH4_6g50161' => 'fve',
		'FvH4_7g04123' => 'fve',
		'FvH4_c7g00010' => 'fve',
		'Gorai.012G165300' => 'gra',
		'HanXRQChr00c0452g0574871' => 'han',
		'HanXRQChr01g0029471' => 'han',
		'HanXRQChr05g0133501' => 'han',
		'HanXRQChr10g0280141' => 'han',
		'HanXRQChr10g0280631' => 'han',
		'HanXRQChr13g0409991' => 'han',
		'HanXRQChr15g0468361' => 'han',
		'Hma1.2p1_0021F.1_g014270' => 'hma',
		'Hma1.2p1_0026F.1_g016730' => 'hma',
		'Hma1.2p1_0177F.1_g077930' => 'hma',
		'Hma1.2p1_0370F.1_g137540' => 'hma',
		'Hma1.2p1_0637F.1_g193600' => 'hma',
		'Hma1.2p1_1045F.1_g251360' => 'hma',
		'Hma1.2p1_1168F.1_g263120' => 'hma',
		'Hma1.2p1_1640F.1_g295040' => 'hma',
		'Hma1.2p1_2467F.1_g322660' => 'hma',
		'Hund01785' => 'sun',
		'Hund04739' => 'sun',
		'Hund07717' => 'sun',
		'Hund08060' => 'sun',
		'Hund08734' => 'sun',
		'Hund10876' => 'sun',
		'Hund14991' => 'sun',
		'Hund15051' => 'sun',
		'Hund15082' => 'sun',
		'Hund17998' => 'sun',
		'Hund18526' => 'sun',
		'Hund19828' => 'sun',
		'Hund23384' => 'sun',
		'Hund26399' => 'sun',
		'Hund28766' => 'sun',
		'Hund28768' => 'sun',
		'Lj1A487G33' => 'lonja',
		'Lj1A487G34' => 'lonja',
		'Lj1A489G15' => 'lonja',
		'Lj1C1113T3' => 'lonja',
		'Lj1C3T4' => 'lonja',
		'Lj1C763G4' => 'lonja',
		'Lj1P195T27' => 'lonja',
		'Lj1P573T13' => 'lonja',
		'Lj1P895T45' => 'lonja',
		'Lj1P995G28' => 'lonja',
		'Lj2A1125G46' => 'lonja',
		'Lj2C116T7' => 'lonja',
		'Lj2P295T30' => 'lonja',
		'Lj2P476T23' => 'lonja',
		'Lj2P603T27' => 'lonja',
		'Lj2P609T17' => 'lonja',
		'Lj2P727T24' => 'lonja',
		'Lj3C273T2' => 'lonja',
		'Lj3C644G3' => 'lonja',
		'Lj3C644G4' => 'lonja',
		'Lj3P463T4' => 'lonja',
		'Lj3P545T31' => 'lonja',
		'Lj3P820T55' => 'lonja',
		'Lj4C260T12' => 'lonja',
		'Lj4C714G8' => 'lonja',
		'Lj4P131T14' => 'lonja',
		'Lj4P131T15' => 'lonja',
		'Lj5C102G24' => 'lonja',
		'Lj5P491T3' => 'lonja',
		'Lj5P564T12' => 'lonja',
		'Lj5P786T11' => 'lonja',
		'Lj6C97T3' => 'lonja',
		'Lj8P523T19' => 'lonja',
		'Lj9A24G30' => 'lonja',
		'Lj9A424G33' => 'lonja',
		'Lj9C219G10' => 'lonja',
		'Lj9P219T12' => 'lonja',
		'Lj9P705T22' => 'lonja',
		'Lju114C4T7' => 'lonja',
		'Lju1220C5G5' => 'lonja',
		'Lju2092C1G1' => 'lonja',
		'Lju2092C1T0' => 'lonja',
		'Lju225C6G6' => 'lonja',
		'Lju427C2T0' => 'lonja',
		'Lju50C9T4' => 'lonja',
		'Lju926C12T2' => 'lonja',
		'Manes.06G126602' => 'mes',
		'Manes.13G002614' => 'mes',
		'Manes.15G192966' => 'mes',
		'Manes.17G001483' => 'mes',
		'Manes.17G022547' => 'mes',
		'Manes.18G042825' => 'mes',
		'Manes.S026816' => 'mes',
		'Manes.S027416' => 'mes',
		'MBI02_g15234_MAGBIO' => 'mbi',
		'MBI16_g35584_MAGBIO' => 'mbi',
		'MELO3C008948.2' => 'cme',
		'MELO3C010395.2' => 'cme',
		'MELO3C010396.2' => 'cme',
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		'Sopen12g014290' => 'spe',
		'Sopen12g015060' => 'spe',
		'Sopen12g015610' => 'spe',
		'Sopen12g018380' => 'spe',
		'Sopen12g019150' => 'spe',
		'Sopen12g020560' => 'spe',
		'Sopen12g023320' => 'spe',
		'Sp3g24190' => 'spa',
		'Sp4g07270' => 'spa',
		'Sp4g07530' => 'spa',
		'Sp4g07670' => 'spa',
		'Sp6g09360' => 'spa',
		'Sp7g04180' => 'spa',
		'Sp7g04980' => 'spa',
		'Sp7g08200' => 'spa',
		'Sp7g09660' => 'spa',
		'SpUn0081_0010' => 'spa',
		'THA.LOC104803417' => 'tha',
		'THA.LOC104817059' => 'tha',
		'Thecc.01G188700' => 'tca',
		'Thecc.05G106700' => 'tca',
		'Thecc.06G068800' => 'tca',
		'Thecc.07G189100' => 'tca',
		'Thecc.09G172800' => 'tca',
		'Thhalv10023044m.g' => 'esa',
		'Thhalv10023881m.g' => 'esa',
		'Thhalv10024067m.g' => 'esa'
	),
	'gf_id' => 'HOM05D000691',
	'gf_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'gf_types_configuration' => array(
		'HOMFAM' => array(
			'order' => '1',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		),
		'ORTHOFAM' => array(
			'order' => '2',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		)
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'allow_async_use' => true,
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D000691'
	),
	'data_identifier' => 'HOM05D000691',
	'data_type' => 'gf_id'
)
$sidebar_info = array(
	'gf_id' => 'HOM05D000691',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '827',
	'num_species' => '39'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$gf_genes = array(
	'Ah.01g012340' => 'amhyb',
	'Ah.01g013530' => 'amhyb',
	'Ah.03g143080' => 'amhyb',
	'Ah.06g186750' => 'amhyb',
	'Ah.06g186800' => 'amhyb',
	'Ah.07g200050' => 'amhyb',
	'Ah.08g209110' => 'amhyb',
	'Ah.09g229600' => 'amhyb',
	'Ah.09g229610' => 'amhyb',
	'Ah.10g026490' => 'amhyb',
	'Ah.12g065350' => 'amhyb',
	'Ah.13g069310' => 'amhyb',
	'Ah.14g080130' => 'amhyb',
	'Ah.14g081130' => 'amhyb',
	'Ah.14g081140' => 'amhyb',
	'Ah.16g109160' => 'amhyb',
	'Ah.16g109170' => 'amhyb',
	'Ah.16g109370' => 'amhyb',
	'AL3G47720' => 'aly',
	'ATR0012G060' => 'atr',
	'ATR0026G029' => 'atr',
	'ATR0193G043' => 'atr',
	'ATR0561G076' => 'atr',
	'ATR0561G181' => 'atr',
	'ATR0568G014' => 'atr',
	'ATR0568G114' => 'atr',
	'ATR0620G039' => 'atr',
	'ATR0629G125' => 'atr',
	'ATR0661G583' => 'atr',
	'ATR0686G019' => 'atr',
	'ATR0693G232' => 'atr',
	'ATR0697G104' => 'atr',
	'ATR0789G146' => 'atr',
	'ATR0794G066' => 'atr',
	'ATR1127G127' => 'atr',
	'ATR1131G040' => 'atr',
	'ATR1134G004' => 'atr',
	'ATR1134G095' => 'atr',
	'ATR1152G110' => 'atr',
	'ATR1153G065' => 'atr',
	'Atru.chr3.2296' => 'acertr',
	'AUR62000692' => 'cqu',
	'AUR62001473' => 'cqu',
	'AUR62001812' => 'cqu',
	'AUR62002706' => 'cqu',
	'AUR62003904' => 'cqu',
	'AUR62003905' => 'cqu',
	'AUR62004840' => 'cqu',
	'AUR62005160' => 'cqu',
	'AUR62005604' => 'cqu',
	'AUR62005891' => 'cqu',
	'AUR62007290' => 'cqu',
	'AUR62007502' => 'cqu',
	'AUR62007923' => 'cqu',
	'AUR62009972' => 'cqu',
	'AUR62010488' => 'cqu',
	'AUR62010643' => 'cqu',
	'AUR62012637' => 'cqu',
	'AUR62013492' => 'cqu',
	'AUR62014239' => 'cqu',
	'AUR62014878' => 'cqu',
	'AUR62015857' => 'cqu',
	'AUR62016224' => 'cqu',
	'AUR62017430' => 'cqu',
	'AUR62017467' => 'cqu',
	'AUR62018234' => 'cqu',
	'AUR62019060' => 'cqu',
	'AUR62019607' => 'cqu',
	'AUR62019661' => 'cqu',
	'AUR62022775' => 'cqu',
	'AUR62023603' => 'cqu',
	'AUR62024563' => 'cqu',
	'AUR62026199' => 'cqu',
	'AUR62026905' => 'cqu',
	'AUR62028639' => 'cqu',
	'AUR62029168' => 'cqu',
	'AUR62029551' => 'cqu',
	'AUR62029860' => 'cqu',
	'AUR62030164' => 'cqu',
	'AUR62031208' => 'cqu',
	'AUR62031287' => 'cqu',
	'AUR62031817' => 'cqu',
	'AUR62032126' => 'cqu',
	'AUR62032358' => 'cqu',
	'AUR62032884' => 'cqu',
	'AUR62032892' => 'cqu',
	'AUR62033082' => 'cqu',
	'AUR62033100' => 'cqu',
	'AUR62033255' => 'cqu',
	'AUR62033698' => 'cqu',
	'AUR62033757' => 'cqu',
	'AUR62034760' => 'cqu',
	'AUR62034860' => 'cqu',
	'AUR62035179' => 'cqu',
	'AUR62035881' => 'cqu',
	'AUR62036824' => 'cqu',
	'AUR62036876' => 'cqu',
	'AUR62037319' => 'cqu',
	'AUR62037362' => 'cqu',
	'AUR62037541' => 'cqu',
	'AUR62037853' => 'cqu',
	'AUR62038299' => 'cqu',
	'AUR62038563' => 'cqu',
	'AUR62038564' => 'cqu',
	'AUR62038594' => 'cqu',
	'AUR62038792' => 'cqu',
	'AUR62038947' => 'cqu',
	'AUR62039030' => 'cqu',
	'AUR62039231' => 'cqu',
	'AUR62039452' => 'cqu',
	'AUR62040334' => 'cqu',
	'AUR62040869' => 'cqu',
	'AUR62040870' => 'cqu',
	'AUR62040916' => 'cqu',
	'AUR62041199' => 'cqu',
	'AUR62041334' => 'cqu',
	'AUR62041608' => 'cqu',
	'AUR62041609' => 'cqu',
	'AUR62041833' => 'cqu',
	'AUR62041834' => 'cqu',
	'AUR62042054' => 'cqu',
	'AUR62042134' => 'cqu',
	'AUR62042236' => 'cqu',
	'AUR62042281' => 'cqu',
	'AUR62042593' => 'cqu',
	'AUR62042653' => 'cqu',
	'AUR62043025' => 'cqu',
	'AUR62043026' => 'cqu',
	'AUR62043063' => 'cqu',
	'AUR62043091' => 'cqu',
	'AUR62043320' => 'cqu',
	'BolC5t32558H' => 'bol',
	'CAN.G1036.12' => 'can',
	'CAN.G1432.23' => 'can',
	'CAN.G159.19' => 'can',
	'CAN.G4114.1' => 'can',
	'CAN.G492.85' => 'can',
	'CAN.G500.95' => 'can',
	'CAN.G93.31' => 'can',
	'CiPaw.04G054900' => 'cil',
	'CiPaw.05G045400' => 'cil',
	'CiPaw.15G094100' => 'cil',
	'ClCG00G000700' => 'cla',
	'ClCG00G000780' => 'cla',
	'ClCG01G012280' => 'cla',
	'ClCG02G006140' => 'cla',
	'ClCG02G009810' => 'cla',
	'ClCG03G010170' => 'cla',
	'ClCG03G010260' => 'cla',
	'ClCG04G000770' => 'cla',
	'ClCG05G013980' => 'cla',
	'ClCG06G009110' => 'cla',
	'ClCG06G009120' => 'cla',
	'ClCG08G002190' => 'cla',
	'ClCG09G013830' => 'cla',
	'ClCG10G006760' => 'cla',
	'ClCG11G007310' => 'cla',
	'COL.COLO4_16141' => 'col',
	'Cpa.g.sc202.2' => 'cpa',
	'Cpa.g.sc76.18' => 'cpa',
	'CsaV3_1G031080' => 'csa',
	'CsaV3_4G011870' => 'csa',
	'CsaV3_4G014860' => 'csa',
	'CsaV3_4G021860' => 'csa',
	'CsaV3_6G009880' => 'csa',
	'CsaV3_7G021240' => 'csa',
	'CsaV3_UNG240600' => 'csa',
	'CSS0003516' => 'camsi',
	'CSS0013023' => 'camsi',
	'CSS0017680' => 'camsi',
	'CSS0018551' => 'camsi',
	'CSS0026792' => 'camsi',
	'CSS0028271' => 'camsi',
	'CSS0033603' => 'camsi',
	'CSS0040789' => 'camsi',
	'CSS0045068' => 'camsi',
	'CSS0045803' => 'camsi',
	'Dinv10528' => 'din',
	'Duzib116G0875' => 'dzi',
	'Duzib128G0055' => 'dzi',
	'EL10Ac1g02377' => 'bvu',
	'EL10Ac1g02378' => 'bvu',
	'EL10Ac2g03486' => 'bvu',
	'EL10Ac2g03487' => 'bvu',
	'EL10Ac3g05722' => 'bvu',
	'EL10Ac3g06186' => 'bvu',
	'EL10Ac5g11258' => 'bvu',
	'EL10Ac6g13831' => 'bvu',
	'EL10Ac6g14162' => 'bvu',
	'EL10Ac6g14316' => 'bvu',
	'EL10Ac6g14317' => 'bvu',
	'EL10Ac6g14588' => 'bvu',
	'EL10Ac7g16302' => 'bvu',
	'EL10Ac7g16543' => 'bvu',
	'EL10Ac8g18762' => 'bvu',
	'EL10Ac9g20847' => 'bvu',
	'EL10As7g23731' => 'bvu',
	'EL10As7g23732' => 'bvu',
	'FvH4_1g23713' => 'fve',
	'FvH4_2g00261' => 'fve',
	'FvH4_2g00262' => 'fve',
	'FvH4_2g15681' => 'fve',
	'FvH4_2g17851' => 'fve',
	'FvH4_3g10531' => 'fve',
	'FvH4_3g33536' => 'fve',
	'FvH4_4g03471' => 'fve',
	'FvH4_4g19351' => 'fve',
	'FvH4_4g34281' => 'fve',
	'FvH4_5g03811' => 'fve',
	'FvH4_5g03812' => 'fve',
	'FvH4_5g11822' => 'fve',
	'FvH4_5g31701' => 'fve',
	'FvH4_6g12161' => 'fve',
	'FvH4_6g15222' => 'fve',
	'FvH4_6g15223' => 'fve',
	'FvH4_6g19301' => 'fve',
	'FvH4_6g33011' => 'fve',
	'FvH4_6g50161' => 'fve',
	'FvH4_7g04123' => 'fve',
	'FvH4_c7g00010' => 'fve',
	'Gorai.012G165300' => 'gra',
	'HanXRQChr00c0452g0574871' => 'han',
	'HanXRQChr01g0029471' => 'han',
	'HanXRQChr05g0133501' => 'han',
	'HanXRQChr10g0280141' => 'han',
	'HanXRQChr10g0280631' => 'han',
	'HanXRQChr13g0409991' => 'han',
	'HanXRQChr15g0468361' => 'han',
	'Hma1.2p1_0021F.1_g014270' => 'hma',
	'Hma1.2p1_0026F.1_g016730' => 'hma',
	'Hma1.2p1_0177F.1_g077930' => 'hma',
	'Hma1.2p1_0370F.1_g137540' => 'hma',
	'Hma1.2p1_0637F.1_g193600' => 'hma',
	'Hma1.2p1_1045F.1_g251360' => 'hma',
	'Hma1.2p1_1168F.1_g263120' => 'hma',
	'Hma1.2p1_1640F.1_g295040' => 'hma',
	'Hma1.2p1_2467F.1_g322660' => 'hma',
	'Hund01785' => 'sun',
	'Hund04739' => 'sun',
	'Hund07717' => 'sun',
	'Hund08060' => 'sun',
	'Hund08734' => 'sun',
	'Hund10876' => 'sun',
	'Hund14991' => 'sun',
	'Hund15051' => 'sun',
	'Hund15082' => 'sun',
	'Hund17998' => 'sun',
	'Hund18526' => 'sun',
	'Hund19828' => 'sun',
	'Hund23384' => 'sun',
	'Hund26399' => 'sun',
	'Hund28766' => 'sun',
	'Hund28768' => 'sun',
	'Lj1A487G33' => 'lonja',
	'Lj1A487G34' => 'lonja',
	'Lj1A489G15' => 'lonja',
	'Lj1C1113T3' => 'lonja',
	'Lj1C3T4' => 'lonja',
	'Lj1C763G4' => 'lonja',
	'Lj1P195T27' => 'lonja',
	'Lj1P573T13' => 'lonja',
	'Lj1P895T45' => 'lonja',
	'Lj1P995G28' => 'lonja',
	'Lj2A1125G46' => 'lonja',
	'Lj2C116T7' => 'lonja',
	'Lj2P295T30' => 'lonja',
	'Lj2P476T23' => 'lonja',
	'Lj2P603T27' => 'lonja',
	'Lj2P609T17' => 'lonja',
	'Lj2P727T24' => 'lonja',
	'Lj3C273T2' => 'lonja',
	'Lj3C644G3' => 'lonja',
	'Lj3C644G4' => 'lonja',
	'Lj3P463T4' => 'lonja',
	'Lj3P545T31' => 'lonja',
	'Lj3P820T55' => 'lonja',
	'Lj4C260T12' => 'lonja',
	'Lj4C714G8' => 'lonja',
	'Lj4P131T14' => 'lonja',
	'Lj4P131T15' => 'lonja',
	'Lj5C102G24' => 'lonja',
	'Lj5P491T3' => 'lonja',
	'Lj5P564T12' => 'lonja',
	'Lj5P786T11' => 'lonja',
	'Lj6C97T3' => 'lonja',
	'Lj8P523T19' => 'lonja',
	'Lj9A24G30' => 'lonja',
	'Lj9A424G33' => 'lonja',
	'Lj9C219G10' => 'lonja',
	'Lj9P219T12' => 'lonja',
	'Lj9P705T22' => 'lonja',
	'Lju114C4T7' => 'lonja',
	'Lju1220C5G5' => 'lonja',
	'Lju2092C1G1' => 'lonja',
	'Lju2092C1T0' => 'lonja',
	'Lju225C6G6' => 'lonja',
	'Lju427C2T0' => 'lonja',
	'Lju50C9T4' => 'lonja',
	'Lju926C12T2' => 'lonja',
	'Manes.06G126602' => 'mes',
	'Manes.13G002614' => 'mes',
	'Manes.15G192966' => 'mes',
	'Manes.17G001483' => 'mes',
	'Manes.17G022547' => 'mes',
	'Manes.18G042825' => 'mes',
	'Manes.S026816' => 'mes',
	'Manes.S027416' => 'mes',
	'MBI02_g15234_MAGBIO' => 'mbi',
	'MBI16_g35584_MAGBIO' => 'mbi',
	'MELO3C008948.2' => 'cme',
	'MELO3C010395.2' => 'cme',
	'MELO3C010396.2' => 'cme',
	'MELO3C015759.2' => 'cme',
	'MELO3C022607.2' => 'cme',
	'MELO3C028897.2' => 'cme',
	'Oeu000188.1' => 'oeu',
	'Oeu002226.1' => 'oeu',
	'Oeu003087.1' => 'oeu',
	'Oeu003392.1' => 'oeu',
	'Oeu003523.1' => 'oeu',
	'Oeu003524.1' => 'oeu',
	'Oeu003528.1' => 'oeu',
	'Oeu003547.2' => 'oeu',
	'Oeu004677.1' => 'oeu',
	'Oeu005362.1' => 'oeu',
	'Oeu005833.1' => 'oeu',
	'Oeu005834.1' => 'oeu',
	'Oeu006751.1' => 'oeu',
	'Oeu007084.1' => 'oeu',
	'Oeu007264.1' => 'oeu',
	'Oeu008153.1' => 'oeu',
	'Oeu008228.1' => 'oeu',
	'Oeu008229.1' => 'oeu',
	'Oeu009580.1' => 'oeu',
	'Oeu010110.1' => 'oeu',
	'Oeu011704.1' => 'oeu',
	'Oeu011912.1' => 'oeu',
	'Oeu012057.1' => 'oeu',
	'Oeu012157.1' => 'oeu',
	'Oeu013775.1' => 'oeu',
	'Oeu013806.1' => 'oeu',
	'Oeu016457.1' => 'oeu',
	'Oeu016803.1' => 'oeu',
	'Oeu017243.2' => 'oeu',
	'Oeu017935.1' => 'oeu',
	'Oeu020246.2' => 'oeu',
	'Oeu020990.1' => 'oeu',
	'Oeu021941.1' => 'oeu',
	'Oeu021986.1' => 'oeu',
	'Oeu023578.1' => 'oeu',
	'Oeu024242.1' => 'oeu',
	'Oeu025087.1' => 'oeu',
	'Oeu025093.1' => 'oeu',
	'Oeu025412.1' => 'oeu',
	'Oeu025520.1' => 'oeu',
	'Oeu026473.1' => 'oeu',
	'Oeu027505.1' => 'oeu',
	'Oeu027530.1' => 'oeu',
	'Oeu027794.2' => 'oeu',
	'Oeu028951.1' => 'oeu',
	'Oeu029141.1' => 'oeu',
	'Oeu029231.4' => 'oeu',
	'Oeu029388.1' => 'oeu',
	'Oeu029673.1' => 'oeu',
	'Oeu029674.1' => 'oeu',
	'Oeu029748.1' => 'oeu',
	'Oeu030224.1' => 'oeu',
	'Oeu030243.1' => 'oeu',
	'Oeu030253.1' => 'oeu',
	'Oeu030414.1' => 'oeu',
	'Oeu030415.1' => 'oeu',
	'Oeu030472.1' => 'oeu',
	'Oeu031432.1' => 'oeu',
	'Oeu031697.1' => 'oeu',
	'Oeu032030.1' => 'oeu',
	'Oeu032031.1' => 'oeu',
	'Oeu032075.1' => 'oeu',
	'Oeu032737.1' => 'oeu',
	'Oeu033407.1' => 'oeu',
	'Oeu033485.1' => 'oeu',
	'Oeu034465.1' => 'oeu',
	'Oeu034951.1' => 'oeu',
	'Oeu036281.1' => 'oeu',
	'Oeu036931.1' => 'oeu',
	'Oeu036932.1' => 'oeu',
	'Oeu037340.1' => 'oeu',
	'Oeu037611.1' => 'oeu',
	'Oeu039205.1' => 'oeu',
	'Oeu039325.1' => 'oeu',
	'Oeu040999.1' => 'oeu',
	'Oeu041244.1' => 'oeu',
	'Oeu041682.1' => 'oeu',
	'Oeu041863.1' => 'oeu',
	'Oeu042345.1' => 'oeu',
	'Oeu042346.1' => 'oeu',
	'Oeu042671.1' => 'oeu',
	'Oeu043273.1' => 'oeu',
	'Oeu043573.1' => 'oeu',
	'Oeu044071.1' => 'oeu',
	'Oeu046813.1' => 'oeu',
	'Oeu048160.1' => 'oeu',
	'Oeu048162.1' => 'oeu',
	'Oeu048282.1' => 'oeu',
	'Oeu048297.1' => 'oeu',
	'Oeu048360.1' => 'oeu',
	'Oeu048565.1' => 'oeu',
	'Oeu049268.1' => 'oeu',
	'Oeu049465.1' => 'oeu',
	'Oeu049978.1' => 'oeu',
	'Oeu050628.1' => 'oeu',
	'Oeu050727.1' => 'oeu',
	'Oeu052065.1' => 'oeu',
	'Oeu052582.1' => 'oeu',
	'Oeu053090.1' => 'oeu',
	'Oeu053644.1' => 'oeu',
	'Oeu053713.1' => 'oeu',
	'Oeu055027.1' => 'oeu',
	'Oeu057741.1' => 'oeu',
	'Oeu058973.1' => 'oeu',
	'Oeu060366.1' => 'oeu',
	'Oeu061428.1' => 'oeu',
	'Oeu062087.1' => 'oeu',
	'Oeu062537.1' => 'oeu',
	'Oeu062538.1' => 'oeu',
	'Oeu064387.1' => 'oeu',
	'PGSC0003DMG400002344' => 'stu',
	'PGSC0003DMG400004046' => 'stu',
	'PGSC0003DMG400006418' => 'stu',
	'PGSC0003DMG400008410' => 'stu',
	'PGSC0003DMG400008620' => 'stu',
	'PGSC0003DMG400009504' => 'stu',
	'PGSC0003DMG400009845' => 'stu',
	'PGSC0003DMG400011177' => 'stu',
	'PGSC0003DMG400011629' => 'stu',
	'PGSC0003DMG400013586' => 'stu',
	'PGSC0003DMG400013599' => 'stu',
	'PGSC0003DMG400014534' => 'stu',
	'PGSC0003DMG400016055' => 'stu',
	'PGSC0003DMG400016736' => 'stu',
	'PGSC0003DMG400016866' => 'stu',
	'PGSC0003DMG400017701' => 'stu',
	'PGSC0003DMG400018448' => 'stu',
	'PGSC0003DMG400020751' => 'stu',
	'PGSC0003DMG400021088' => 'stu',
	'PGSC0003DMG400021387' => 'stu',
	'PGSC0003DMG400021640' => 'stu',
	'PGSC0003DMG400021704' => 'stu',
	'PGSC0003DMG400022155' => 'stu',
	'PGSC0003DMG400023544' => 'stu',
	'PGSC0003DMG400023564' => 'stu',
	'PGSC0003DMG400028558' => 'stu',
	'PGSC0003DMG400028618' => 'stu',
	'PGSC0003DMG400029149' => 'stu',
	'PGSC0003DMG400029979' => 'stu',
	'PGSC0003DMG400030069' => 'stu',
	'PGSC0003DMG400031272' => 'stu',
	'PGSC0003DMG400034656' => 'stu',
	'PGSC0003DMG400035151' => 'stu',
	'PGSC0003DMG400035741' => 'stu',
	'PGSC0003DMG400036100' => 'stu',
	'PGSC0003DMG400037683' => 'stu',
	'PGSC0003DMG400038046' => 'stu',
	'PGSC0003DMG400040121' => 'stu',
	'PGSC0003DMG400042113' => 'stu',
	'PGSC0003DMG400042218' => 'stu',
	'PGSC0003DMG400044188' => 'stu',
	'PGSC0003DMG400044323' => 'stu',
	'PGSC0003DMG400045014' => 'stu',
	'PGSC0003DMG400045177' => 'stu',
	'PGSC0003DMG400047199' => 'stu',
	'Potri.017G071366' => 'ptr',
	'RcHm_v2.0_Chr2g0137481' => 'rch',
	'Sc20g0003180' => 'sci',
	'SEGI_00305' => 'sgi',
	'SEGI_02246' => 'sgi',
	'SEGI_03696' => 'sgi',
	'SEGI_05490' => 'sgi',
	'SEGI_05682' => 'sgi',
	'SEGI_05900' => 'sgi',
	'SEGI_06517' => 'sgi',
	'SEGI_12587' => 'sgi',
	'SEGI_13129' => 'sgi',
	'SEGI_16935' => 'sgi',
	'SEGI_18008' => 'sgi',
	'SEGI_18224' => 'sgi',
	'SEGI_20188' => 'sgi',
	'SEGI_20772' => 'sgi',
	'SEGI_20842' => 'sgi',
	'SEGI_22270' => 'sgi',
	'SEGI_22705' => 'sgi',
	'SEGI_23638' => 'sgi',
	'SEGI_23928' => 'sgi',
	'SEGI_24790' => 'sgi',
	'SEGI_28421' => 'sgi',
	'SEGI_28832' => 'sgi',
	'SEGI_29884' => 'sgi',
	'SEGI_30829' => 'sgi',
	'SEGI_35046' => 'sgi',
	'SEGI_35582' => 'sgi',
	'SEGI_37882' => 'sgi',
	'SEGI_39680' => 'sgi',
	'SEGI_40069' => 'sgi',
	'SEGI_40087' => 'sgi',
	'SEGI_41606' => 'sgi',
	'SGA_v2.0_scaffold50G18578' => 'sas',
	'SHI00293' => 'shi',
	'SHI00389' => 'shi',
	'SHI00445' => 'shi',
	'SHI01000' => 'shi',
	'SHI01503' => 'shi',
	'SHI01718' => 'shi',
	'SHI03454' => 'shi',
	'SHI03493' => 'shi',
	'SHI03494' => 'shi',
	'SHI03628' => 'shi',
	'SHI04457' => 'shi',
	'SHI04691' => 'shi',
	'SHI04829' => 'shi',
	'SHI05225' => 'shi',
	'SHI06326' => 'shi',
	'SHI06505' => 'shi',
	'SHI06770' => 'shi',
	'SHI07388' => 'shi',
	'SHI07582' => 'shi',
	'SHI07583' => 'shi',
	'SHI08271' => 'shi',
	'SHI10619' => 'shi',
	'SHI10892' => 'shi',
	'SHI10910' => 'shi',
	'SHI10911' => 'shi',
	'SHI14326' => 'shi',
	'SHI14681' => 'shi',
	'SHI15017' => 'shi',
	'SHI15096' => 'shi',
	'SHI15120' => 'shi',
	'SHI15274' => 'shi',
	'SHI16232' => 'shi',
	'SHI16811' => 'shi',
	'SHI17386' => 'shi',
	'SHI17926' => 'shi',
	'SHI18293' => 'shi',
	'SHI20489' => 'shi',
	'SHI20658' => 'shi',
	'SHI20663' => 'shi',
	'SHI21566' => 'shi',
	'SHI22547' => 'shi',
	'SHI22708' => 'shi',
	'SHI22709' => 'shi',
	'SHI22878' => 'shi',
	'SHI22879' => 'shi',
	'SHI23024' => 'shi',
	'SHI25053' => 'shi',
	'SHI25076' => 'shi',
	'SHI25116' => 'shi',
	'SHI25381' => 'shi',
	'SHI25535' => 'shi',
	'SHI25740' => 'shi',
	'SHI25991' => 'shi',
	'SHI26344' => 'shi',
	'SHI26345' => 'shi',
	'SHI27097' => 'shi',
	'SHI27140' => 'shi',
	'SHI27178' => 'shi',
	'SHI27207' => 'shi',
	'SHI27225' => 'shi',
	'SHI27734' => 'shi',
	'SHI27806' => 'shi',
	'SHI28576' => 'shi',
	'SHI29081' => 'shi',
	'SHI30038' => 'shi',
	'SHI30394' => 'shi',
	'SHI30652' => 'shi',
	'SHI32154' => 'shi',
	'SHI32205' => 'shi',
	'SHI32365' => 'shi',
	'SHI32439' => 'shi',
	'SHI32505' => 'shi',
	'SHI32626' => 'shi',
	'SHI32714' => 'shi',
	'SHI32715' => 'shi',
	'SHI32716' => 'shi',
	'SHI33118' => 'shi',
	'SHI33318' => 'shi',
	'SHI33373' => 'shi',
	'SHI33512' => 'shi',
	'SHI33625' => 'shi',
	'SHI34327' => 'shi',
	'SHI35604' => 'shi',
	'SHI36119' => 'shi',
	'SHI36120' => 'shi',
	'SHI44959' => 'shi',
	'SHI46406' => 'shi',
	'SHI48191' => 'shi',
	'SHI48192' => 'shi',
	'Solyc10g150111.1' => 'sly',
	'Solyc12g062340.2' => 'sly',
	'Sopen00g001750' => 'spe',
	'Sopen00g001820' => 'spe',
	'Sopen00g001830' => 'spe',
	'Sopen00g001890' => 'spe',
	'Sopen00g002240' => 'spe',
	'Sopen00g003950' => 'spe',
	'Sopen00g004130' => 'spe',
	'Sopen00g004810' => 'spe',
	'Sopen00g005120' => 'spe',
	'Sopen00g005190' => 'spe',
	'Sopen00g007000' => 'spe',
	'Sopen00g007210' => 'spe',
	'Sopen00g012840' => 'spe',
	'Sopen00g013060' => 'spe',
	'Sopen00g013610' => 'spe',
	'Sopen00g013630' => 'spe',
	'Sopen01g004610' => 'spe',
	'Sopen01g007660' => 'spe',
	'Sopen01g007750' => 'spe',
	'Sopen01g007760' => 'spe',
	'Sopen01g007770' => 'spe',
	'Sopen01g007860' => 'spe',
	'Sopen01g009130' => 'spe',
	'Sopen01g009820' => 'spe',
	'Sopen01g011240' => 'spe',
	'Sopen01g012740' => 'spe',
	'Sopen01g013840' => 'spe',
	'Sopen01g013850' => 'spe',
	'Sopen01g016140' => 'spe',
	'Sopen01g016150' => 'spe',
	'Sopen01g016830' => 'spe',
	'Sopen01g017260' => 'spe',
	'Sopen01g019000' => 'spe',
	'Sopen01g019690' => 'spe',
	'Sopen01g022160' => 'spe',
	'Sopen01g024000' => 'spe',
	'Sopen01g024670' => 'spe',
	'Sopen01g024770' => 'spe',
	'Sopen01g024900' => 'spe',
	'Sopen01g025130' => 'spe',
	'Sopen01g026370' => 'spe',
	'Sopen01g041640' => 'spe',
	'Sopen01g046930' => 'spe',
	'Sopen02g001360' => 'spe',
	'Sopen02g002010' => 'spe',
	'Sopen02g003600' => 'spe',
	'Sopen02g003730' => 'spe',
	'Sopen02g005430' => 'spe',
	'Sopen02g005510' => 'spe',
	'Sopen02g006840' => 'spe',
	'Sopen02g007390' => 'spe',
	'Sopen02g007420' => 'spe',
	'Sopen02g007540' => 'spe',
	'Sopen02g007920' => 'spe',
	'Sopen02g008960' => 'spe',
	'Sopen02g009450' => 'spe',
	'Sopen02g009460' => 'spe',
	'Sopen02g011320' => 'spe',
	'Sopen02g012680' => 'spe',
	'Sopen02g018090' => 'spe',
	'Sopen02g022140' => 'spe',
	'Sopen03g010330' => 'spe',
	'Sopen03g013130' => 'spe',
	'Sopen03g013180' => 'spe',
	'Sopen03g013230' => 'spe',
	'Sopen03g014110' => 'spe',
	'Sopen03g015260' => 'spe',
	'Sopen03g015790' => 'spe',
	'Sopen03g018360' => 'spe',
	'Sopen03g024470' => 'spe',
	'Sopen03g026800' => 'spe',
	'Sopen04g003180' => 'spe',
	'Sopen04g008260' => 'spe',
	'Sopen04g010320' => 'spe',
	'Sopen04g011020' => 'spe',
	'Sopen04g011200' => 'spe',
	'Sopen04g011280' => 'spe',
	'Sopen04g021910' => 'spe',
	'Sopen04g023870' => 'spe',
	'Sopen05g009880' => 'spe',
	'Sopen05g011580' => 'spe',
	'Sopen05g012230' => 'spe',
	'Sopen05g012500' => 'spe',
	'Sopen05g012560' => 'spe',
	'Sopen05g012570' => 'spe',
	'Sopen05g012760' => 'spe',
	'Sopen05g013710' => 'spe',
	'Sopen05g015050' => 'spe',
	'Sopen05g026090' => 'spe',
	'Sopen05g028020' => 'spe',
	'Sopen05g028610' => 'spe',
	'Sopen05g029300' => 'spe',
	'Sopen06g005520' => 'spe',
	'Sopen06g006750' => 'spe',
	'Sopen06g008160' => 'spe',
	'Sopen06g009120' => 'spe',
	'Sopen06g013550' => 'spe',
	'Sopen06g015340' => 'spe',
	'Sopen06g018330' => 'spe',
	'Sopen06g021630' => 'spe',
	'Sopen06g021650' => 'spe',
	'Sopen07g006730' => 'spe',
	'Sopen07g008690' => 'spe',
	'Sopen07g008700' => 'spe',
	'Sopen07g008720' => 'spe',
	'Sopen07g008870' => 'spe',
	'Sopen07g009400' => 'spe',
	'Sopen07g009410' => 'spe',
	'Sopen07g009470' => 'spe',
	'Sopen07g009540' => 'spe',
	'Sopen07g011060' => 'spe',
	'Sopen07g011110' => 'spe',
	'Sopen07g011820' => 'spe',
	'Sopen07g013260' => 'spe',
	'Sopen07g014740' => 'spe',
	'Sopen07g015160' => 'spe',
	'Sopen07g015230' => 'spe',
	'Sopen07g016240' => 'spe',
	'Sopen07g017200' => 'spe',
	'Sopen07g017810' => 'spe',
	'Sopen07g019030' => 'spe',
	'Sopen07g020430' => 'spe',
	'Sopen07g021010' => 'spe',
	'Sopen07g021340' => 'spe',
	'Sopen07g022950' => 'spe',
	'Sopen07g027860' => 'spe',
	'Sopen08g007820' => 'spe',
	'Sopen08g009330' => 'spe',
	'Sopen08g012310' => 'spe',
	'Sopen08g012560' => 'spe',
	'Sopen08g014040' => 'spe',
	'Sopen08g014650' => 'spe',
	'Sopen08g017020' => 'spe',
	'Sopen08g018300' => 'spe',
	'Sopen08g020530' => 'spe',
	'Sopen09g008590' => 'spe',
	'Sopen09g008780' => 'spe',
	'Sopen09g011540' => 'spe',
	'Sopen09g011920' => 'spe',
	'Sopen09g014170' => 'spe',
	'Sopen09g016520' => 'spe',
	'Sopen09g021030' => 'spe',
	'Sopen09g023110' => 'spe',
	'Sopen09g024750' => 'spe',
	'Sopen09g025230' => 'spe',
	'Sopen09g025600' => 'spe',
	'Sopen09g034660' => 'spe',
	'Sopen10g006700' => 'spe',
	'Sopen10g009130' => 'spe',
	'Sopen10g009140' => 'spe',
	'Sopen10g009560' => 'spe',
	'Sopen10g010340' => 'spe',
	'Sopen10g011040' => 'spe',
	'Sopen10g013650' => 'spe',
	'Sopen10g014130' => 'spe',
	'Sopen10g014140' => 'spe',
	'Sopen10g014760' => 'spe',
	'Sopen10g015080' => 'spe',
	'Sopen10g015830' => 'spe',
	'Sopen10g018240' => 'spe',
	'Sopen10g018300' => 'spe',
	'Sopen10g018350' => 'spe',
	'Sopen10g018460' => 'spe',
	'Sopen10g018670' => 'spe',
	'Sopen10g019040' => 'spe',
	'Sopen10g019330' => 'spe',
	'Sopen10g019340' => 'spe',
	'Sopen10g019360' => 'spe',
	'Sopen10g019370' => 'spe',
	'Sopen10g020620' => 'spe',
	'Sopen10g021550' => 'spe',
	'Sopen10g022160' => 'spe',
	'Sopen10g023540' => 'spe',
	'Sopen10g023570' => 'spe',
	'Sopen10g023580' => 'spe',
	'Sopen10g023600' => 'spe',
	'Sopen10g023620' => 'spe',
	'Sopen10g023650' => 'spe',
	'Sopen10g024800' => 'spe',
	'Sopen10g026170' => 'spe',
	'Sopen11g007790' => 'spe',
	'Sopen11g010170' => 'spe',
	'Sopen11g010580' => 'spe',
	'Sopen11g013420' => 'spe',
	'Sopen11g016330' => 'spe',
	'Sopen11g017010' => 'spe',
	'Sopen11g018110' => 'spe',
	'Sopen11g018960' => 'spe',
	'Sopen11g019000' => 'spe',
	'Sopen11g019970' => 'spe',
	'Sopen11g020340' => 'spe',
	'Sopen11g020970' => 'spe',
	'Sopen12g008510' => 'spe',
	'Sopen12g008910' => 'spe',
	'Sopen12g009010' => 'spe',
	'Sopen12g009120' => 'spe',
	'Sopen12g009340' => 'spe',
	'Sopen12g009580' => 'spe',
	'Sopen12g010190' => 'spe',
	'Sopen12g010320' => 'spe',
	'Sopen12g010370' => 'spe',
	'Sopen12g012140' => 'spe',
	'Sopen12g012700' => 'spe',
	'Sopen12g013490' => 'spe',
	'Sopen12g014290' => 'spe',
	'Sopen12g015060' => 'spe',
	'Sopen12g015610' => 'spe',
	'Sopen12g018380' => 'spe',
	'Sopen12g019150' => 'spe',
	'Sopen12g020560' => 'spe',
	'Sopen12g023320' => 'spe',
	'Sp3g24190' => 'spa',
	'Sp4g07270' => 'spa',
	'Sp4g07530' => 'spa',
	'Sp4g07670' => 'spa',
	'Sp6g09360' => 'spa',
	'Sp7g04180' => 'spa',
	'Sp7g04980' => 'spa',
	'Sp7g08200' => 'spa',
	'Sp7g09660' => 'spa',
	'SpUn0081_0010' => 'spa',
	'THA.LOC104803417' => 'tha',
	'THA.LOC104817059' => 'tha',
	'Thecc.01G188700' => 'tca',
	'Thecc.05G106700' => 'tca',
	'Thecc.06G068800' => 'tca',
	'Thecc.07G189100' => 'tca',
	'Thecc.09G172800' => 'tca',
	'Thhalv10023044m.g' => 'esa',
	'Thhalv10023881m.g' => 'esa',
	'Thhalv10024067m.g' => 'esa'
)
$gf_id = 'HOM05D000691'
$gf_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$gf_types_configuration = array(
	'HOMFAM' => array(
		'order' => '1',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	),
	'ORTHOFAM' => array(
		'order' => '2',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	)
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$allow_async_use = true
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D000691'
)
$data_identifier = 'HOM05D000691'
$data_type = 'gf_id'
$species_gene_counts = array(
	'amhyb' => (int) 18,
	'aly' => (int) 1,
	'atr' => (int) 21,
	'acertr' => (int) 1,
	'cqu' => (int) 90,
	'bol' => (int) 1,
	'can' => (int) 7,
	'cil' => (int) 3,
	'cla' => (int) 15,
	'col' => (int) 1,
	'cpa' => (int) 2,
	'csa' => (int) 7,
	'camsi' => (int) 10,
	'din' => (int) 1,
	'dzi' => (int) 2,
	'bvu' => (int) 18,
	'fve' => (int) 22,
	'gra' => (int) 1,
	'han' => (int) 7,
	'hma' => (int) 9,
	'sun' => (int) 16,
	'lonja' => (int) 46,
	'mes' => (int) 8,
	'mbi' => (int) 2,
	'cme' => (int) 6,
	'oeu' => (int) 110,
	'stu' => (int) 45,
	'ptr' => (int) 1,
	'rch' => (int) 1,
	'sci' => (int) 1,
	'sgi' => (int) 31,
	'sas' => (int) 1,
	'shi' => (int) 89,
	'sly' => (int) 2,
	'spe' => (int) 211,
	'spa' => (int) 10,
	'tha' => (int) 2,
	'tca' => (int) 5,
	'esa' => (int) 3
)
$gf_gene_species = 'esa'
$gf_gene_id = 'Thhalv10024067m.g'
$species_info = array(
	'species' => 'esa',
	'common_name' => 'Eutrema salsugineum',
	'tax_id' => '72664',
	'version' => 'v1.0'
)
$local_species = 'esa'
$disabled = ''
$selected = ''
$num_hits = (int) 0
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Analysis/custom_tree_creation.ctp, line 27
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933

Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]
Code Context
        $disabled    = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";

        $selected    = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";

        $num_hits    = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D000691',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '827',
		'num_species' => '39'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'gf_genes' => array(
		'Ah.01g012340' => 'amhyb',
		'Ah.01g013530' => 'amhyb',
		'Ah.03g143080' => 'amhyb',
		'Ah.06g186750' => 'amhyb',
		'Ah.06g186800' => 'amhyb',
		'Ah.07g200050' => 'amhyb',
		'Ah.08g209110' => 'amhyb',
		'Ah.09g229600' => 'amhyb',
		'Ah.09g229610' => 'amhyb',
		'Ah.10g026490' => 'amhyb',
		'Ah.12g065350' => 'amhyb',
		'Ah.13g069310' => 'amhyb',
		'Ah.14g080130' => 'amhyb',
		'Ah.14g081130' => 'amhyb',
		'Ah.14g081140' => 'amhyb',
		'Ah.16g109160' => 'amhyb',
		'Ah.16g109170' => 'amhyb',
		'Ah.16g109370' => 'amhyb',
		'AL3G47720' => 'aly',
		'ATR0012G060' => 'atr',
		'ATR0026G029' => 'atr',
		'ATR0193G043' => 'atr',
		'ATR0561G076' => 'atr',
		'ATR0561G181' => 'atr',
		'ATR0568G014' => 'atr',
		'ATR0568G114' => 'atr',
		'ATR0620G039' => 'atr',
		'ATR0629G125' => 'atr',
		'ATR0661G583' => 'atr',
		'ATR0686G019' => 'atr',
		'ATR0693G232' => 'atr',
		'ATR0697G104' => 'atr',
		'ATR0789G146' => 'atr',
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		'SEGI_28421' => 'sgi',
		'SEGI_28832' => 'sgi',
		'SEGI_29884' => 'sgi',
		'SEGI_30829' => 'sgi',
		'SEGI_35046' => 'sgi',
		'SEGI_35582' => 'sgi',
		'SEGI_37882' => 'sgi',
		'SEGI_39680' => 'sgi',
		'SEGI_40069' => 'sgi',
		'SEGI_40087' => 'sgi',
		'SEGI_41606' => 'sgi',
		'SGA_v2.0_scaffold50G18578' => 'sas',
		'SHI00293' => 'shi',
		'SHI00389' => 'shi',
		'SHI00445' => 'shi',
		'SHI01000' => 'shi',
		'SHI01503' => 'shi',
		'SHI01718' => 'shi',
		'SHI03454' => 'shi',
		'SHI03493' => 'shi',
		'SHI03494' => 'shi',
		'SHI03628' => 'shi',
		'SHI04457' => 'shi',
		'SHI04691' => 'shi',
		'SHI04829' => 'shi',
		'SHI05225' => 'shi',
		'SHI06326' => 'shi',
		'SHI06505' => 'shi',
		'SHI06770' => 'shi',
		'SHI07388' => 'shi',
		'SHI07582' => 'shi',
		'SHI07583' => 'shi',
		'SHI08271' => 'shi',
		'SHI10619' => 'shi',
		'SHI10892' => 'shi',
		'SHI10910' => 'shi',
		'SHI10911' => 'shi',
		'SHI14326' => 'shi',
		'SHI14681' => 'shi',
		'SHI15017' => 'shi',
		'SHI15096' => 'shi',
		'SHI15120' => 'shi',
		'SHI15274' => 'shi',
		'SHI16232' => 'shi',
		'SHI16811' => 'shi',
		'SHI17386' => 'shi',
		'SHI17926' => 'shi',
		'SHI18293' => 'shi',
		'SHI20489' => 'shi',
		'SHI20658' => 'shi',
		'SHI20663' => 'shi',
		'SHI21566' => 'shi',
		'SHI22547' => 'shi',
		'SHI22708' => 'shi',
		'SHI22709' => 'shi',
		'SHI22878' => 'shi',
		'SHI22879' => 'shi',
		'SHI23024' => 'shi',
		'SHI25053' => 'shi',
		'SHI25076' => 'shi',
		'SHI25116' => 'shi',
		'SHI25381' => 'shi',
		'SHI25535' => 'shi',
		'SHI25740' => 'shi',
		'SHI25991' => 'shi',
		'SHI26344' => 'shi',
		'SHI26345' => 'shi',
		'SHI27097' => 'shi',
		'SHI27140' => 'shi',
		'SHI27178' => 'shi',
		'SHI27207' => 'shi',
		'SHI27225' => 'shi',
		'SHI27734' => 'shi',
		'SHI27806' => 'shi',
		'SHI28576' => 'shi',
		'SHI29081' => 'shi',
		'SHI30038' => 'shi',
		'SHI30394' => 'shi',
		'SHI30652' => 'shi',
		'SHI32154' => 'shi',
		'SHI32205' => 'shi',
		'SHI32365' => 'shi',
		'SHI32439' => 'shi',
		'SHI32505' => 'shi',
		'SHI32626' => 'shi',
		'SHI32714' => 'shi',
		'SHI32715' => 'shi',
		'SHI32716' => 'shi',
		'SHI33118' => 'shi',
		'SHI33318' => 'shi',
		'SHI33373' => 'shi',
		'SHI33512' => 'shi',
		'SHI33625' => 'shi',
		'SHI34327' => 'shi',
		'SHI35604' => 'shi',
		'SHI36119' => 'shi',
		'SHI36120' => 'shi',
		'SHI44959' => 'shi',
		'SHI46406' => 'shi',
		'SHI48191' => 'shi',
		'SHI48192' => 'shi',
		'Solyc10g150111.1' => 'sly',
		'Solyc12g062340.2' => 'sly',
		'Sopen00g001750' => 'spe',
		'Sopen00g001820' => 'spe',
		'Sopen00g001830' => 'spe',
		'Sopen00g001890' => 'spe',
		'Sopen00g002240' => 'spe',
		'Sopen00g003950' => 'spe',
		'Sopen00g004130' => 'spe',
		'Sopen00g004810' => 'spe',
		'Sopen00g005120' => 'spe',
		'Sopen00g005190' => 'spe',
		'Sopen00g007000' => 'spe',
		'Sopen00g007210' => 'spe',
		'Sopen00g012840' => 'spe',
		'Sopen00g013060' => 'spe',
		'Sopen00g013610' => 'spe',
		'Sopen00g013630' => 'spe',
		'Sopen01g004610' => 'spe',
		'Sopen01g007660' => 'spe',
		'Sopen01g007750' => 'spe',
		'Sopen01g007760' => 'spe',
		'Sopen01g007770' => 'spe',
		'Sopen01g007860' => 'spe',
		'Sopen01g009130' => 'spe',
		'Sopen01g009820' => 'spe',
		'Sopen01g011240' => 'spe',
		'Sopen01g012740' => 'spe',
		'Sopen01g013840' => 'spe',
		'Sopen01g013850' => 'spe',
		'Sopen01g016140' => 'spe',
		'Sopen01g016150' => 'spe',
		'Sopen01g016830' => 'spe',
		'Sopen01g017260' => 'spe',
		'Sopen01g019000' => 'spe',
		'Sopen01g019690' => 'spe',
		'Sopen01g022160' => 'spe',
		'Sopen01g024000' => 'spe',
		'Sopen01g024670' => 'spe',
		'Sopen01g024770' => 'spe',
		'Sopen01g024900' => 'spe',
		'Sopen01g025130' => 'spe',
		'Sopen01g026370' => 'spe',
		'Sopen01g041640' => 'spe',
		'Sopen01g046930' => 'spe',
		'Sopen02g001360' => 'spe',
		'Sopen02g002010' => 'spe',
		'Sopen02g003600' => 'spe',
		'Sopen02g003730' => 'spe',
		'Sopen02g005430' => 'spe',
		'Sopen02g005510' => 'spe',
		'Sopen02g006840' => 'spe',
		'Sopen02g007390' => 'spe',
		'Sopen02g007420' => 'spe',
		'Sopen02g007540' => 'spe',
		'Sopen02g007920' => 'spe',
		'Sopen02g008960' => 'spe',
		'Sopen02g009450' => 'spe',
		'Sopen02g009460' => 'spe',
		'Sopen02g011320' => 'spe',
		'Sopen02g012680' => 'spe',
		'Sopen02g018090' => 'spe',
		'Sopen02g022140' => 'spe',
		'Sopen03g010330' => 'spe',
		'Sopen03g013130' => 'spe',
		'Sopen03g013180' => 'spe',
		'Sopen03g013230' => 'spe',
		'Sopen03g014110' => 'spe',
		'Sopen03g015260' => 'spe',
		'Sopen03g015790' => 'spe',
		'Sopen03g018360' => 'spe',
		'Sopen03g024470' => 'spe',
		'Sopen03g026800' => 'spe',
		'Sopen04g003180' => 'spe',
		'Sopen04g008260' => 'spe',
		'Sopen04g010320' => 'spe',
		'Sopen04g011020' => 'spe',
		'Sopen04g011200' => 'spe',
		'Sopen04g011280' => 'spe',
		'Sopen04g021910' => 'spe',
		'Sopen04g023870' => 'spe',
		'Sopen05g009880' => 'spe',
		'Sopen05g011580' => 'spe',
		'Sopen05g012230' => 'spe',
		'Sopen05g012500' => 'spe',
		'Sopen05g012560' => 'spe',
		'Sopen05g012570' => 'spe',
		'Sopen05g012760' => 'spe',
		'Sopen05g013710' => 'spe',
		'Sopen05g015050' => 'spe',
		'Sopen05g026090' => 'spe',
		'Sopen05g028020' => 'spe',
		'Sopen05g028610' => 'spe',
		'Sopen05g029300' => 'spe',
		'Sopen06g005520' => 'spe',
		'Sopen06g006750' => 'spe',
		'Sopen06g008160' => 'spe',
		'Sopen06g009120' => 'spe',
		'Sopen06g013550' => 'spe',
		'Sopen06g015340' => 'spe',
		'Sopen06g018330' => 'spe',
		'Sopen06g021630' => 'spe',
		'Sopen06g021650' => 'spe',
		'Sopen07g006730' => 'spe',
		'Sopen07g008690' => 'spe',
		'Sopen07g008700' => 'spe',
		'Sopen07g008720' => 'spe',
		'Sopen07g008870' => 'spe',
		'Sopen07g009400' => 'spe',
		'Sopen07g009410' => 'spe',
		'Sopen07g009470' => 'spe',
		'Sopen07g009540' => 'spe',
		'Sopen07g011060' => 'spe',
		'Sopen07g011110' => 'spe',
		'Sopen07g011820' => 'spe',
		'Sopen07g013260' => 'spe',
		'Sopen07g014740' => 'spe',
		'Sopen07g015160' => 'spe',
		'Sopen07g015230' => 'spe',
		'Sopen07g016240' => 'spe',
		'Sopen07g017200' => 'spe',
		'Sopen07g017810' => 'spe',
		'Sopen07g019030' => 'spe',
		'Sopen07g020430' => 'spe',
		'Sopen07g021010' => 'spe',
		'Sopen07g021340' => 'spe',
		'Sopen07g022950' => 'spe',
		'Sopen07g027860' => 'spe',
		'Sopen08g007820' => 'spe',
		'Sopen08g009330' => 'spe',
		'Sopen08g012310' => 'spe',
		'Sopen08g012560' => 'spe',
		'Sopen08g014040' => 'spe',
		'Sopen08g014650' => 'spe',
		'Sopen08g017020' => 'spe',
		'Sopen08g018300' => 'spe',
		'Sopen08g020530' => 'spe',
		'Sopen09g008590' => 'spe',
		'Sopen09g008780' => 'spe',
		'Sopen09g011540' => 'spe',
		'Sopen09g011920' => 'spe',
		'Sopen09g014170' => 'spe',
		'Sopen09g016520' => 'spe',
		'Sopen09g021030' => 'spe',
		'Sopen09g023110' => 'spe',
		'Sopen09g024750' => 'spe',
		'Sopen09g025230' => 'spe',
		'Sopen09g025600' => 'spe',
		'Sopen09g034660' => 'spe',
		'Sopen10g006700' => 'spe',
		'Sopen10g009130' => 'spe',
		'Sopen10g009140' => 'spe',
		'Sopen10g009560' => 'spe',
		'Sopen10g010340' => 'spe',
		'Sopen10g011040' => 'spe',
		'Sopen10g013650' => 'spe',
		'Sopen10g014130' => 'spe',
		'Sopen10g014140' => 'spe',
		'Sopen10g014760' => 'spe',
		'Sopen10g015080' => 'spe',
		'Sopen10g015830' => 'spe',
		'Sopen10g018240' => 'spe',
		'Sopen10g018300' => 'spe',
		'Sopen10g018350' => 'spe',
		'Sopen10g018460' => 'spe',
		'Sopen10g018670' => 'spe',
		'Sopen10g019040' => 'spe',
		'Sopen10g019330' => 'spe',
		'Sopen10g019340' => 'spe',
		'Sopen10g019360' => 'spe',
		'Sopen10g019370' => 'spe',
		'Sopen10g020620' => 'spe',
		'Sopen10g021550' => 'spe',
		'Sopen10g022160' => 'spe',
		'Sopen10g023540' => 'spe',
		'Sopen10g023570' => 'spe',
		'Sopen10g023580' => 'spe',
		'Sopen10g023600' => 'spe',
		'Sopen10g023620' => 'spe',
		'Sopen10g023650' => 'spe',
		'Sopen10g024800' => 'spe',
		'Sopen10g026170' => 'spe',
		'Sopen11g007790' => 'spe',
		'Sopen11g010170' => 'spe',
		'Sopen11g010580' => 'spe',
		'Sopen11g013420' => 'spe',
		'Sopen11g016330' => 'spe',
		'Sopen11g017010' => 'spe',
		'Sopen11g018110' => 'spe',
		'Sopen11g018960' => 'spe',
		'Sopen11g019000' => 'spe',
		'Sopen11g019970' => 'spe',
		'Sopen11g020340' => 'spe',
		'Sopen11g020970' => 'spe',
		'Sopen12g008510' => 'spe',
		'Sopen12g008910' => 'spe',
		'Sopen12g009010' => 'spe',
		'Sopen12g009120' => 'spe',
		'Sopen12g009340' => 'spe',
		'Sopen12g009580' => 'spe',
		'Sopen12g010190' => 'spe',
		'Sopen12g010320' => 'spe',
		'Sopen12g010370' => 'spe',
		'Sopen12g012140' => 'spe',
		'Sopen12g012700' => 'spe',
		'Sopen12g013490' => 'spe',
		'Sopen12g014290' => 'spe',
		'Sopen12g015060' => 'spe',
		'Sopen12g015610' => 'spe',
		'Sopen12g018380' => 'spe',
		'Sopen12g019150' => 'spe',
		'Sopen12g020560' => 'spe',
		'Sopen12g023320' => 'spe',
		'Sp3g24190' => 'spa',
		'Sp4g07270' => 'spa',
		'Sp4g07530' => 'spa',
		'Sp4g07670' => 'spa',
		'Sp6g09360' => 'spa',
		'Sp7g04180' => 'spa',
		'Sp7g04980' => 'spa',
		'Sp7g08200' => 'spa',
		'Sp7g09660' => 'spa',
		'SpUn0081_0010' => 'spa',
		'THA.LOC104803417' => 'tha',
		'THA.LOC104817059' => 'tha',
		'Thecc.01G188700' => 'tca',
		'Thecc.05G106700' => 'tca',
		'Thecc.06G068800' => 'tca',
		'Thecc.07G189100' => 'tca',
		'Thecc.09G172800' => 'tca',
		'Thhalv10023044m.g' => 'esa',
		'Thhalv10023881m.g' => 'esa',
		'Thhalv10024067m.g' => 'esa'
	),
	'gf_id' => 'HOM05D000691',
	'gf_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'gf_types_configuration' => array(
		'HOMFAM' => array(
			'order' => '1',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		),
		'ORTHOFAM' => array(
			'order' => '2',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		)
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'allow_async_use' => true,
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D000691'
	),
	'data_identifier' => 'HOM05D000691',
	'data_type' => 'gf_id'
)
$sidebar_info = array(
	'gf_id' => 'HOM05D000691',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '827',
	'num_species' => '39'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$gf_genes = array(
	'Ah.01g012340' => 'amhyb',
	'Ah.01g013530' => 'amhyb',
	'Ah.03g143080' => 'amhyb',
	'Ah.06g186750' => 'amhyb',
	'Ah.06g186800' => 'amhyb',
	'Ah.07g200050' => 'amhyb',
	'Ah.08g209110' => 'amhyb',
	'Ah.09g229600' => 'amhyb',
	'Ah.09g229610' => 'amhyb',
	'Ah.10g026490' => 'amhyb',
	'Ah.12g065350' => 'amhyb',
	'Ah.13g069310' => 'amhyb',
	'Ah.14g080130' => 'amhyb',
	'Ah.14g081130' => 'amhyb',
	'Ah.14g081140' => 'amhyb',
	'Ah.16g109160' => 'amhyb',
	'Ah.16g109170' => 'amhyb',
	'Ah.16g109370' => 'amhyb',
	'AL3G47720' => 'aly',
	'ATR0012G060' => 'atr',
	'ATR0026G029' => 'atr',
	'ATR0193G043' => 'atr',
	'ATR0561G076' => 'atr',
	'ATR0561G181' => 'atr',
	'ATR0568G014' => 'atr',
	'ATR0568G114' => 'atr',
	'ATR0620G039' => 'atr',
	'ATR0629G125' => 'atr',
	'ATR0661G583' => 'atr',
	'ATR0686G019' => 'atr',
	'ATR0693G232' => 'atr',
	'ATR0697G104' => 'atr',
	'ATR0789G146' => 'atr',
	'ATR0794G066' => 'atr',
	'ATR1127G127' => 'atr',
	'ATR1131G040' => 'atr',
	'ATR1134G004' => 'atr',
	'ATR1134G095' => 'atr',
	'ATR1152G110' => 'atr',
	'ATR1153G065' => 'atr',
	'Atru.chr3.2296' => 'acertr',
	'AUR62000692' => 'cqu',
	'AUR62001473' => 'cqu',
	'AUR62001812' => 'cqu',
	'AUR62002706' => 'cqu',
	'AUR62003904' => 'cqu',
	'AUR62003905' => 'cqu',
	'AUR62004840' => 'cqu',
	'AUR62005160' => 'cqu',
	'AUR62005604' => 'cqu',
	'AUR62005891' => 'cqu',
	'AUR62007290' => 'cqu',
	'AUR62007502' => 'cqu',
	'AUR62007923' => 'cqu',
	'AUR62009972' => 'cqu',
	'AUR62010488' => 'cqu',
	'AUR62010643' => 'cqu',
	'AUR62012637' => 'cqu',
	'AUR62013492' => 'cqu',
	'AUR62014239' => 'cqu',
	'AUR62014878' => 'cqu',
	'AUR62015857' => 'cqu',
	'AUR62016224' => 'cqu',
	'AUR62017430' => 'cqu',
	'AUR62017467' => 'cqu',
	'AUR62018234' => 'cqu',
	'AUR62019060' => 'cqu',
	'AUR62019607' => 'cqu',
	'AUR62019661' => 'cqu',
	'AUR62022775' => 'cqu',
	'AUR62023603' => 'cqu',
	'AUR62024563' => 'cqu',
	'AUR62026199' => 'cqu',
	'AUR62026905' => 'cqu',
	'AUR62028639' => 'cqu',
	'AUR62029168' => 'cqu',
	'AUR62029551' => 'cqu',
	'AUR62029860' => 'cqu',
	'AUR62030164' => 'cqu',
	'AUR62031208' => 'cqu',
	'AUR62031287' => 'cqu',
	'AUR62031817' => 'cqu',
	'AUR62032126' => 'cqu',
	'AUR62032358' => 'cqu',
	'AUR62032884' => 'cqu',
	'AUR62032892' => 'cqu',
	'AUR62033082' => 'cqu',
	'AUR62033100' => 'cqu',
	'AUR62033255' => 'cqu',
	'AUR62033698' => 'cqu',
	'AUR62033757' => 'cqu',
	'AUR62034760' => 'cqu',
	'AUR62034860' => 'cqu',
	'AUR62035179' => 'cqu',
	'AUR62035881' => 'cqu',
	'AUR62036824' => 'cqu',
	'AUR62036876' => 'cqu',
	'AUR62037319' => 'cqu',
	'AUR62037362' => 'cqu',
	'AUR62037541' => 'cqu',
	'AUR62037853' => 'cqu',
	'AUR62038299' => 'cqu',
	'AUR62038563' => 'cqu',
	'AUR62038564' => 'cqu',
	'AUR62038594' => 'cqu',
	'AUR62038792' => 'cqu',
	'AUR62038947' => 'cqu',
	'AUR62039030' => 'cqu',
	'AUR62039231' => 'cqu',
	'AUR62039452' => 'cqu',
	'AUR62040334' => 'cqu',
	'AUR62040869' => 'cqu',
	'AUR62040870' => 'cqu',
	'AUR62040916' => 'cqu',
	'AUR62041199' => 'cqu',
	'AUR62041334' => 'cqu',
	'AUR62041608' => 'cqu',
	'AUR62041609' => 'cqu',
	'AUR62041833' => 'cqu',
	'AUR62041834' => 'cqu',
	'AUR62042054' => 'cqu',
	'AUR62042134' => 'cqu',
	'AUR62042236' => 'cqu',
	'AUR62042281' => 'cqu',
	'AUR62042593' => 'cqu',
	'AUR62042653' => 'cqu',
	'AUR62043025' => 'cqu',
	'AUR62043026' => 'cqu',
	'AUR62043063' => 'cqu',
	'AUR62043091' => 'cqu',
	'AUR62043320' => 'cqu',
	'BolC5t32558H' => 'bol',
	'CAN.G1036.12' => 'can',
	'CAN.G1432.23' => 'can',
	'CAN.G159.19' => 'can',
	'CAN.G4114.1' => 'can',
	'CAN.G492.85' => 'can',
	'CAN.G500.95' => 'can',
	'CAN.G93.31' => 'can',
	'CiPaw.04G054900' => 'cil',
	'CiPaw.05G045400' => 'cil',
	'CiPaw.15G094100' => 'cil',
	'ClCG00G000700' => 'cla',
	'ClCG00G000780' => 'cla',
	'ClCG01G012280' => 'cla',
	'ClCG02G006140' => 'cla',
	'ClCG02G009810' => 'cla',
	'ClCG03G010170' => 'cla',
	'ClCG03G010260' => 'cla',
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	'Sopen02g009460' => 'spe',
	'Sopen02g011320' => 'spe',
	'Sopen02g012680' => 'spe',
	'Sopen02g018090' => 'spe',
	'Sopen02g022140' => 'spe',
	'Sopen03g010330' => 'spe',
	'Sopen03g013130' => 'spe',
	'Sopen03g013180' => 'spe',
	'Sopen03g013230' => 'spe',
	'Sopen03g014110' => 'spe',
	'Sopen03g015260' => 'spe',
	'Sopen03g015790' => 'spe',
	'Sopen03g018360' => 'spe',
	'Sopen03g024470' => 'spe',
	'Sopen03g026800' => 'spe',
	'Sopen04g003180' => 'spe',
	'Sopen04g008260' => 'spe',
	'Sopen04g010320' => 'spe',
	'Sopen04g011020' => 'spe',
	'Sopen04g011200' => 'spe',
	'Sopen04g011280' => 'spe',
	'Sopen04g021910' => 'spe',
	'Sopen04g023870' => 'spe',
	'Sopen05g009880' => 'spe',
	'Sopen05g011580' => 'spe',
	'Sopen05g012230' => 'spe',
	'Sopen05g012500' => 'spe',
	'Sopen05g012560' => 'spe',
	'Sopen05g012570' => 'spe',
	'Sopen05g012760' => 'spe',
	'Sopen05g013710' => 'spe',
	'Sopen05g015050' => 'spe',
	'Sopen05g026090' => 'spe',
	'Sopen05g028020' => 'spe',
	'Sopen05g028610' => 'spe',
	'Sopen05g029300' => 'spe',
	'Sopen06g005520' => 'spe',
	'Sopen06g006750' => 'spe',
	'Sopen06g008160' => 'spe',
	'Sopen06g009120' => 'spe',
	'Sopen06g013550' => 'spe',
	'Sopen06g015340' => 'spe',
	'Sopen06g018330' => 'spe',
	'Sopen06g021630' => 'spe',
	'Sopen06g021650' => 'spe',
	'Sopen07g006730' => 'spe',
	'Sopen07g008690' => 'spe',
	'Sopen07g008700' => 'spe',
	'Sopen07g008720' => 'spe',
	'Sopen07g008870' => 'spe',
	'Sopen07g009400' => 'spe',
	'Sopen07g009410' => 'spe',
	'Sopen07g009470' => 'spe',
	'Sopen07g009540' => 'spe',
	'Sopen07g011060' => 'spe',
	'Sopen07g011110' => 'spe',
	'Sopen07g011820' => 'spe',
	'Sopen07g013260' => 'spe',
	'Sopen07g014740' => 'spe',
	'Sopen07g015160' => 'spe',
	'Sopen07g015230' => 'spe',
	'Sopen07g016240' => 'spe',
	'Sopen07g017200' => 'spe',
	'Sopen07g017810' => 'spe',
	'Sopen07g019030' => 'spe',
	'Sopen07g020430' => 'spe',
	'Sopen07g021010' => 'spe',
	'Sopen07g021340' => 'spe',
	'Sopen07g022950' => 'spe',
	'Sopen07g027860' => 'spe',
	'Sopen08g007820' => 'spe',
	'Sopen08g009330' => 'spe',
	'Sopen08g012310' => 'spe',
	'Sopen08g012560' => 'spe',
	'Sopen08g014040' => 'spe',
	'Sopen08g014650' => 'spe',
	'Sopen08g017020' => 'spe',
	'Sopen08g018300' => 'spe',
	'Sopen08g020530' => 'spe',
	'Sopen09g008590' => 'spe',
	'Sopen09g008780' => 'spe',
	'Sopen09g011540' => 'spe',
	'Sopen09g011920' => 'spe',
	'Sopen09g014170' => 'spe',
	'Sopen09g016520' => 'spe',
	'Sopen09g021030' => 'spe',
	'Sopen09g023110' => 'spe',
	'Sopen09g024750' => 'spe',
	'Sopen09g025230' => 'spe',
	'Sopen09g025600' => 'spe',
	'Sopen09g034660' => 'spe',
	'Sopen10g006700' => 'spe',
	'Sopen10g009130' => 'spe',
	'Sopen10g009140' => 'spe',
	'Sopen10g009560' => 'spe',
	'Sopen10g010340' => 'spe',
	'Sopen10g011040' => 'spe',
	'Sopen10g013650' => 'spe',
	'Sopen10g014130' => 'spe',
	'Sopen10g014140' => 'spe',
	'Sopen10g014760' => 'spe',
	'Sopen10g015080' => 'spe',
	'Sopen10g015830' => 'spe',
	'Sopen10g018240' => 'spe',
	'Sopen10g018300' => 'spe',
	'Sopen10g018350' => 'spe',
	'Sopen10g018460' => 'spe',
	'Sopen10g018670' => 'spe',
	'Sopen10g019040' => 'spe',
	'Sopen10g019330' => 'spe',
	'Sopen10g019340' => 'spe',
	'Sopen10g019360' => 'spe',
	'Sopen10g019370' => 'spe',
	'Sopen10g020620' => 'spe',
	'Sopen10g021550' => 'spe',
	'Sopen10g022160' => 'spe',
	'Sopen10g023540' => 'spe',
	'Sopen10g023570' => 'spe',
	'Sopen10g023580' => 'spe',
	'Sopen10g023600' => 'spe',
	'Sopen10g023620' => 'spe',
	'Sopen10g023650' => 'spe',
	'Sopen10g024800' => 'spe',
	'Sopen10g026170' => 'spe',
	'Sopen11g007790' => 'spe',
	'Sopen11g010170' => 'spe',
	'Sopen11g010580' => 'spe',
	'Sopen11g013420' => 'spe',
	'Sopen11g016330' => 'spe',
	'Sopen11g017010' => 'spe',
	'Sopen11g018110' => 'spe',
	'Sopen11g018960' => 'spe',
	'Sopen11g019000' => 'spe',
	'Sopen11g019970' => 'spe',
	'Sopen11g020340' => 'spe',
	'Sopen11g020970' => 'spe',
	'Sopen12g008510' => 'spe',
	'Sopen12g008910' => 'spe',
	'Sopen12g009010' => 'spe',
	'Sopen12g009120' => 'spe',
	'Sopen12g009340' => 'spe',
	'Sopen12g009580' => 'spe',
	'Sopen12g010190' => 'spe',
	'Sopen12g010320' => 'spe',
	'Sopen12g010370' => 'spe',
	'Sopen12g012140' => 'spe',
	'Sopen12g012700' => 'spe',
	'Sopen12g013490' => 'spe',
	'Sopen12g014290' => 'spe',
	'Sopen12g015060' => 'spe',
	'Sopen12g015610' => 'spe',
	'Sopen12g018380' => 'spe',
	'Sopen12g019150' => 'spe',
	'Sopen12g020560' => 'spe',
	'Sopen12g023320' => 'spe',
	'Sp3g24190' => 'spa',
	'Sp4g07270' => 'spa',
	'Sp4g07530' => 'spa',
	'Sp4g07670' => 'spa',
	'Sp6g09360' => 'spa',
	'Sp7g04180' => 'spa',
	'Sp7g04980' => 'spa',
	'Sp7g08200' => 'spa',
	'Sp7g09660' => 'spa',
	'SpUn0081_0010' => 'spa',
	'THA.LOC104803417' => 'tha',
	'THA.LOC104817059' => 'tha',
	'Thecc.01G188700' => 'tca',
	'Thecc.05G106700' => 'tca',
	'Thecc.06G068800' => 'tca',
	'Thecc.07G189100' => 'tca',
	'Thecc.09G172800' => 'tca',
	'Thhalv10023044m.g' => 'esa',
	'Thhalv10023881m.g' => 'esa',
	'Thhalv10024067m.g' => 'esa'
)
$gf_id = 'HOM05D000691'
$gf_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$gf_types_configuration = array(
	'HOMFAM' => array(
		'order' => '1',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	),
	'ORTHOFAM' => array(
		'order' => '2',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	)
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$allow_async_use = true
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D000691'
)
$data_identifier = 'HOM05D000691'
$data_type = 'gf_id'
$species_gene_counts = array(
	'amhyb' => (int) 18,
	'aly' => (int) 1,
	'atr' => (int) 21,
	'acertr' => (int) 1,
	'cqu' => (int) 90,
	'bol' => (int) 1,
	'can' => (int) 7,
	'cil' => (int) 3,
	'cla' => (int) 15,
	'col' => (int) 1,
	'cpa' => (int) 2,
	'csa' => (int) 7,
	'camsi' => (int) 10,
	'din' => (int) 1,
	'dzi' => (int) 2,
	'bvu' => (int) 18,
	'fve' => (int) 22,
	'gra' => (int) 1,
	'han' => (int) 7,
	'hma' => (int) 9,
	'sun' => (int) 16,
	'lonja' => (int) 46,
	'mes' => (int) 8,
	'mbi' => (int) 2,
	'cme' => (int) 6,
	'oeu' => (int) 110,
	'stu' => (int) 45,
	'ptr' => (int) 1,
	'rch' => (int) 1,
	'sci' => (int) 1,
	'sgi' => (int) 31,
	'sas' => (int) 1,
	'shi' => (int) 89,
	'sly' => (int) 2,
	'spe' => (int) 211,
	'spa' => (int) 10,
	'tha' => (int) 2,
	'tca' => (int) 5,
	'esa' => (int) 3
)
$gf_gene_species = 'esa'
$gf_gene_id = 'Thhalv10024067m.g'
$species_info = array(
	'species' => 'fve',
	'common_name' => 'Fragaria vesca',
	'tax_id' => '57918',
	'version' => 'V4.0.a2'
)
$local_species = 'fve'
$disabled = ''
$selected = ''
$num_hits = (int) 1
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Analysis/custom_tree_creation.ctp, line 27
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933

Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]
Code Context
        $disabled    = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";

        $selected    = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";

        $num_hits    = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D000691',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '827',
		'num_species' => '39'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'gf_genes' => array(
		'Ah.01g012340' => 'amhyb',
		'Ah.01g013530' => 'amhyb',
		'Ah.03g143080' => 'amhyb',
		'Ah.06g186750' => 'amhyb',
		'Ah.06g186800' => 'amhyb',
		'Ah.07g200050' => 'amhyb',
		'Ah.08g209110' => 'amhyb',
		'Ah.09g229600' => 'amhyb',
		'Ah.09g229610' => 'amhyb',
		'Ah.10g026490' => 'amhyb',
		'Ah.12g065350' => 'amhyb',
		'Ah.13g069310' => 'amhyb',
		'Ah.14g080130' => 'amhyb',
		'Ah.14g081130' => 'amhyb',
		'Ah.14g081140' => 'amhyb',
		'Ah.16g109160' => 'amhyb',
		'Ah.16g109170' => 'amhyb',
		'Ah.16g109370' => 'amhyb',
		'AL3G47720' => 'aly',
		'ATR0012G060' => 'atr',
		'ATR0026G029' => 'atr',
		'ATR0193G043' => 'atr',
		'ATR0561G076' => 'atr',
		'ATR0561G181' => 'atr',
		'ATR0568G014' => 'atr',
		'ATR0568G114' => 'atr',
		'ATR0620G039' => 'atr',
		'ATR0629G125' => 'atr',
		'ATR0661G583' => 'atr',
		'ATR0686G019' => 'atr',
		'ATR0693G232' => 'atr',
		'ATR0697G104' => 'atr',
		'ATR0789G146' => 'atr',
		'ATR0794G066' => 'atr',
		'ATR1127G127' => 'atr',
		'ATR1131G040' => 'atr',
		'ATR1134G004' => 'atr',
		'ATR1134G095' => 'atr',
		'ATR1152G110' => 'atr',
		'ATR1153G065' => 'atr',
		'Atru.chr3.2296' => 'acertr',
		'AUR62000692' => 'cqu',
		'AUR62001473' => 'cqu',
		'AUR62001812' => 'cqu',
		'AUR62002706' => 'cqu',
		'AUR62003904' => 'cqu',
		'AUR62003905' => 'cqu',
		'AUR62004840' => 'cqu',
		'AUR62005160' => 'cqu',
		'AUR62005604' => 'cqu',
		'AUR62005891' => 'cqu',
		'AUR62007290' => 'cqu',
		'AUR62007502' => 'cqu',
		'AUR62007923' => 'cqu',
		'AUR62009972' => 'cqu',
		'AUR62010488' => 'cqu',
		'AUR62010643' => 'cqu',
		'AUR62012637' => 'cqu',
		'AUR62013492' => 'cqu',
		'AUR62014239' => 'cqu',
		'AUR62014878' => 'cqu',
		'AUR62015857' => 'cqu',
		'AUR62016224' => 'cqu',
		'AUR62017430' => 'cqu',
		'AUR62017467' => 'cqu',
		'AUR62018234' => 'cqu',
		'AUR62019060' => 'cqu',
		'AUR62019607' => 'cqu',
		'AUR62019661' => 'cqu',
		'AUR62022775' => 'cqu',
		'AUR62023603' => 'cqu',
		'AUR62024563' => 'cqu',
		'AUR62026199' => 'cqu',
		'AUR62026905' => 'cqu',
		'AUR62028639' => 'cqu',
		'AUR62029168' => 'cqu',
		'AUR62029551' => 'cqu',
		'AUR62029860' => 'cqu',
		'AUR62030164' => 'cqu',
		'AUR62031208' => 'cqu',
		'AUR62031287' => 'cqu',
		'AUR62031817' => 'cqu',
		'AUR62032126' => 'cqu',
		'AUR62032358' => 'cqu',
		'AUR62032884' => 'cqu',
		'AUR62032892' => 'cqu',
		'AUR62033082' => 'cqu',
		'AUR62033100' => 'cqu',
		'AUR62033255' => 'cqu',
		'AUR62033698' => 'cqu',
		'AUR62033757' => 'cqu',
		'AUR62034760' => 'cqu',
		'AUR62034860' => 'cqu',
		'AUR62035179' => 'cqu',
		'AUR62035881' => 'cqu',
		'AUR62036824' => 'cqu',
		'AUR62036876' => 'cqu',
		'AUR62037319' => 'cqu',
		'AUR62037362' => 'cqu',
		'AUR62037541' => 'cqu',
		'AUR62037853' => 'cqu',
		'AUR62038299' => 'cqu',
		'AUR62038563' => 'cqu',
		'AUR62038564' => 'cqu',
		'AUR62038594' => 'cqu',
		'AUR62038792' => 'cqu',
		'AUR62038947' => 'cqu',
		'AUR62039030' => 'cqu',
		'AUR62039231' => 'cqu',
		'AUR62039452' => 'cqu',
		'AUR62040334' => 'cqu',
		'AUR62040869' => 'cqu',
		'AUR62040870' => 'cqu',
		'AUR62040916' => 'cqu',
		'AUR62041199' => 'cqu',
		'AUR62041334' => 'cqu',
		'AUR62041608' => 'cqu',
		'AUR62041609' => 'cqu',
		'AUR62041833' => 'cqu',
		'AUR62041834' => 'cqu',
		'AUR62042054' => 'cqu',
		'AUR62042134' => 'cqu',
		'AUR62042236' => 'cqu',
		'AUR62042281' => 'cqu',
		'AUR62042593' => 'cqu',
		'AUR62042653' => 'cqu',
		'AUR62043025' => 'cqu',
		'AUR62043026' => 'cqu',
		'AUR62043063' => 'cqu',
		'AUR62043091' => 'cqu',
		'AUR62043320' => 'cqu',
		'BolC5t32558H' => 'bol',
		'CAN.G1036.12' => 'can',
		'CAN.G1432.23' => 'can',
		'CAN.G159.19' => 'can',
		'CAN.G4114.1' => 'can',
		'CAN.G492.85' => 'can',
		'CAN.G500.95' => 'can',
		'CAN.G93.31' => 'can',
		'CiPaw.04G054900' => 'cil',
		'CiPaw.05G045400' => 'cil',
		'CiPaw.15G094100' => 'cil',
		'ClCG00G000700' => 'cla',
		'ClCG00G000780' => 'cla',
		'ClCG01G012280' => 'cla',
		'ClCG02G006140' => 'cla',
		'ClCG02G009810' => 'cla',
		'ClCG03G010170' => 'cla',
		'ClCG03G010260' => 'cla',
		'ClCG04G000770' => 'cla',
		'ClCG05G013980' => 'cla',
		'ClCG06G009110' => 'cla',
		'ClCG06G009120' => 'cla',
		'ClCG08G002190' => 'cla',
		'ClCG09G013830' => 'cla',
		'ClCG10G006760' => 'cla',
		'ClCG11G007310' => 'cla',
		'COL.COLO4_16141' => 'col',
		'Cpa.g.sc202.2' => 'cpa',
		'Cpa.g.sc76.18' => 'cpa',
		'CsaV3_1G031080' => 'csa',
		'CsaV3_4G011870' => 'csa',
		'CsaV3_4G014860' => 'csa',
		'CsaV3_4G021860' => 'csa',
		'CsaV3_6G009880' => 'csa',
		'CsaV3_7G021240' => 'csa',
		'CsaV3_UNG240600' => 'csa',
		'CSS0003516' => 'camsi',
		'CSS0013023' => 'camsi',
		'CSS0017680' => 'camsi',
		'CSS0018551' => 'camsi',
		'CSS0026792' => 'camsi',
		'CSS0028271' => 'camsi',
		'CSS0033603' => 'camsi',
		'CSS0040789' => 'camsi',
		'CSS0045068' => 'camsi',
		'CSS0045803' => 'camsi',
		'Dinv10528' => 'din',
		'Duzib116G0875' => 'dzi',
		'Duzib128G0055' => 'dzi',
		'EL10Ac1g02377' => 'bvu',
		'EL10Ac1g02378' => 'bvu',
		'EL10Ac2g03486' => 'bvu',
		'EL10Ac2g03487' => 'bvu',
		'EL10Ac3g05722' => 'bvu',
		'EL10Ac3g06186' => 'bvu',
		'EL10Ac5g11258' => 'bvu',
		'EL10Ac6g13831' => 'bvu',
		'EL10Ac6g14162' => 'bvu',
		'EL10Ac6g14316' => 'bvu',
		'EL10Ac6g14317' => 'bvu',
		'EL10Ac6g14588' => 'bvu',
		'EL10Ac7g16302' => 'bvu',
		'EL10Ac7g16543' => 'bvu',
		'EL10Ac8g18762' => 'bvu',
		'EL10Ac9g20847' => 'bvu',
		'EL10As7g23731' => 'bvu',
		'EL10As7g23732' => 'bvu',
		'FvH4_1g23713' => 'fve',
		'FvH4_2g00261' => 'fve',
		'FvH4_2g00262' => 'fve',
		'FvH4_2g15681' => 'fve',
		'FvH4_2g17851' => 'fve',
		'FvH4_3g10531' => 'fve',
		'FvH4_3g33536' => 'fve',
		'FvH4_4g03471' => 'fve',
		'FvH4_4g19351' => 'fve',
		'FvH4_4g34281' => 'fve',
		'FvH4_5g03811' => 'fve',
		'FvH4_5g03812' => 'fve',
		'FvH4_5g11822' => 'fve',
		'FvH4_5g31701' => 'fve',
		'FvH4_6g12161' => 'fve',
		'FvH4_6g15222' => 'fve',
		'FvH4_6g15223' => 'fve',
		'FvH4_6g19301' => 'fve',
		'FvH4_6g33011' => 'fve',
		'FvH4_6g50161' => 'fve',
		'FvH4_7g04123' => 'fve',
		'FvH4_c7g00010' => 'fve',
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		'Sopen07g008700' => 'spe',
		'Sopen07g008720' => 'spe',
		'Sopen07g008870' => 'spe',
		'Sopen07g009400' => 'spe',
		'Sopen07g009410' => 'spe',
		'Sopen07g009470' => 'spe',
		'Sopen07g009540' => 'spe',
		'Sopen07g011060' => 'spe',
		'Sopen07g011110' => 'spe',
		'Sopen07g011820' => 'spe',
		'Sopen07g013260' => 'spe',
		'Sopen07g014740' => 'spe',
		'Sopen07g015160' => 'spe',
		'Sopen07g015230' => 'spe',
		'Sopen07g016240' => 'spe',
		'Sopen07g017200' => 'spe',
		'Sopen07g017810' => 'spe',
		'Sopen07g019030' => 'spe',
		'Sopen07g020430' => 'spe',
		'Sopen07g021010' => 'spe',
		'Sopen07g021340' => 'spe',
		'Sopen07g022950' => 'spe',
		'Sopen07g027860' => 'spe',
		'Sopen08g007820' => 'spe',
		'Sopen08g009330' => 'spe',
		'Sopen08g012310' => 'spe',
		'Sopen08g012560' => 'spe',
		'Sopen08g014040' => 'spe',
		'Sopen08g014650' => 'spe',
		'Sopen08g017020' => 'spe',
		'Sopen08g018300' => 'spe',
		'Sopen08g020530' => 'spe',
		'Sopen09g008590' => 'spe',
		'Sopen09g008780' => 'spe',
		'Sopen09g011540' => 'spe',
		'Sopen09g011920' => 'spe',
		'Sopen09g014170' => 'spe',
		'Sopen09g016520' => 'spe',
		'Sopen09g021030' => 'spe',
		'Sopen09g023110' => 'spe',
		'Sopen09g024750' => 'spe',
		'Sopen09g025230' => 'spe',
		'Sopen09g025600' => 'spe',
		'Sopen09g034660' => 'spe',
		'Sopen10g006700' => 'spe',
		'Sopen10g009130' => 'spe',
		'Sopen10g009140' => 'spe',
		'Sopen10g009560' => 'spe',
		'Sopen10g010340' => 'spe',
		'Sopen10g011040' => 'spe',
		'Sopen10g013650' => 'spe',
		'Sopen10g014130' => 'spe',
		'Sopen10g014140' => 'spe',
		'Sopen10g014760' => 'spe',
		'Sopen10g015080' => 'spe',
		'Sopen10g015830' => 'spe',
		'Sopen10g018240' => 'spe',
		'Sopen10g018300' => 'spe',
		'Sopen10g018350' => 'spe',
		'Sopen10g018460' => 'spe',
		'Sopen10g018670' => 'spe',
		'Sopen10g019040' => 'spe',
		'Sopen10g019330' => 'spe',
		'Sopen10g019340' => 'spe',
		'Sopen10g019360' => 'spe',
		'Sopen10g019370' => 'spe',
		'Sopen10g020620' => 'spe',
		'Sopen10g021550' => 'spe',
		'Sopen10g022160' => 'spe',
		'Sopen10g023540' => 'spe',
		'Sopen10g023570' => 'spe',
		'Sopen10g023580' => 'spe',
		'Sopen10g023600' => 'spe',
		'Sopen10g023620' => 'spe',
		'Sopen10g023650' => 'spe',
		'Sopen10g024800' => 'spe',
		'Sopen10g026170' => 'spe',
		'Sopen11g007790' => 'spe',
		'Sopen11g010170' => 'spe',
		'Sopen11g010580' => 'spe',
		'Sopen11g013420' => 'spe',
		'Sopen11g016330' => 'spe',
		'Sopen11g017010' => 'spe',
		'Sopen11g018110' => 'spe',
		'Sopen11g018960' => 'spe',
		'Sopen11g019000' => 'spe',
		'Sopen11g019970' => 'spe',
		'Sopen11g020340' => 'spe',
		'Sopen11g020970' => 'spe',
		'Sopen12g008510' => 'spe',
		'Sopen12g008910' => 'spe',
		'Sopen12g009010' => 'spe',
		'Sopen12g009120' => 'spe',
		'Sopen12g009340' => 'spe',
		'Sopen12g009580' => 'spe',
		'Sopen12g010190' => 'spe',
		'Sopen12g010320' => 'spe',
		'Sopen12g010370' => 'spe',
		'Sopen12g012140' => 'spe',
		'Sopen12g012700' => 'spe',
		'Sopen12g013490' => 'spe',
		'Sopen12g014290' => 'spe',
		'Sopen12g015060' => 'spe',
		'Sopen12g015610' => 'spe',
		'Sopen12g018380' => 'spe',
		'Sopen12g019150' => 'spe',
		'Sopen12g020560' => 'spe',
		'Sopen12g023320' => 'spe',
		'Sp3g24190' => 'spa',
		'Sp4g07270' => 'spa',
		'Sp4g07530' => 'spa',
		'Sp4g07670' => 'spa',
		'Sp6g09360' => 'spa',
		'Sp7g04180' => 'spa',
		'Sp7g04980' => 'spa',
		'Sp7g08200' => 'spa',
		'Sp7g09660' => 'spa',
		'SpUn0081_0010' => 'spa',
		'THA.LOC104803417' => 'tha',
		'THA.LOC104817059' => 'tha',
		'Thecc.01G188700' => 'tca',
		'Thecc.05G106700' => 'tca',
		'Thecc.06G068800' => 'tca',
		'Thecc.07G189100' => 'tca',
		'Thecc.09G172800' => 'tca',
		'Thhalv10023044m.g' => 'esa',
		'Thhalv10023881m.g' => 'esa',
		'Thhalv10024067m.g' => 'esa'
	),
	'gf_id' => 'HOM05D000691',
	'gf_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'gf_types_configuration' => array(
		'HOMFAM' => array(
			'order' => '1',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		),
		'ORTHOFAM' => array(
			'order' => '2',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		)
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'allow_async_use' => true,
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D000691'
	),
	'data_identifier' => 'HOM05D000691',
	'data_type' => 'gf_id'
)
$sidebar_info = array(
	'gf_id' => 'HOM05D000691',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '827',
	'num_species' => '39'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$gf_genes = array(
	'Ah.01g012340' => 'amhyb',
	'Ah.01g013530' => 'amhyb',
	'Ah.03g143080' => 'amhyb',
	'Ah.06g186750' => 'amhyb',
	'Ah.06g186800' => 'amhyb',
	'Ah.07g200050' => 'amhyb',
	'Ah.08g209110' => 'amhyb',
	'Ah.09g229600' => 'amhyb',
	'Ah.09g229610' => 'amhyb',
	'Ah.10g026490' => 'amhyb',
	'Ah.12g065350' => 'amhyb',
	'Ah.13g069310' => 'amhyb',
	'Ah.14g080130' => 'amhyb',
	'Ah.14g081130' => 'amhyb',
	'Ah.14g081140' => 'amhyb',
	'Ah.16g109160' => 'amhyb',
	'Ah.16g109170' => 'amhyb',
	'Ah.16g109370' => 'amhyb',
	'AL3G47720' => 'aly',
	'ATR0012G060' => 'atr',
	'ATR0026G029' => 'atr',
	'ATR0193G043' => 'atr',
	'ATR0561G076' => 'atr',
	'ATR0561G181' => 'atr',
	'ATR0568G014' => 'atr',
	'ATR0568G114' => 'atr',
	'ATR0620G039' => 'atr',
	'ATR0629G125' => 'atr',
	'ATR0661G583' => 'atr',
	'ATR0686G019' => 'atr',
	'ATR0693G232' => 'atr',
	'ATR0697G104' => 'atr',
	'ATR0789G146' => 'atr',
	'ATR0794G066' => 'atr',
	'ATR1127G127' => 'atr',
	'ATR1131G040' => 'atr',
	'ATR1134G004' => 'atr',
	'ATR1134G095' => 'atr',
	'ATR1152G110' => 'atr',
	'ATR1153G065' => 'atr',
	'Atru.chr3.2296' => 'acertr',
	'AUR62000692' => 'cqu',
	'AUR62001473' => 'cqu',
	'AUR62001812' => 'cqu',
	'AUR62002706' => 'cqu',
	'AUR62003904' => 'cqu',
	'AUR62003905' => 'cqu',
	'AUR62004840' => 'cqu',
	'AUR62005160' => 'cqu',
	'AUR62005604' => 'cqu',
	'AUR62005891' => 'cqu',
	'AUR62007290' => 'cqu',
	'AUR62007502' => 'cqu',
	'AUR62007923' => 'cqu',
	'AUR62009972' => 'cqu',
	'AUR62010488' => 'cqu',
	'AUR62010643' => 'cqu',
	'AUR62012637' => 'cqu',
	'AUR62013492' => 'cqu',
	'AUR62014239' => 'cqu',
	'AUR62014878' => 'cqu',
	'AUR62015857' => 'cqu',
	'AUR62016224' => 'cqu',
	'AUR62017430' => 'cqu',
	'AUR62017467' => 'cqu',
	'AUR62018234' => 'cqu',
	'AUR62019060' => 'cqu',
	'AUR62019607' => 'cqu',
	'AUR62019661' => 'cqu',
	'AUR62022775' => 'cqu',
	'AUR62023603' => 'cqu',
	'AUR62024563' => 'cqu',
	'AUR62026199' => 'cqu',
	'AUR62026905' => 'cqu',
	'AUR62028639' => 'cqu',
	'AUR62029168' => 'cqu',
	'AUR62029551' => 'cqu',
	'AUR62029860' => 'cqu',
	'AUR62030164' => 'cqu',
	'AUR62031208' => 'cqu',
	'AUR62031287' => 'cqu',
	'AUR62031817' => 'cqu',
	'AUR62032126' => 'cqu',
	'AUR62032358' => 'cqu',
	'AUR62032884' => 'cqu',
	'AUR62032892' => 'cqu',
	'AUR62033082' => 'cqu',
	'AUR62033100' => 'cqu',
	'AUR62033255' => 'cqu',
	'AUR62033698' => 'cqu',
	'AUR62033757' => 'cqu',
	'AUR62034760' => 'cqu',
	'AUR62034860' => 'cqu',
	'AUR62035179' => 'cqu',
	'AUR62035881' => 'cqu',
	'AUR62036824' => 'cqu',
	'AUR62036876' => 'cqu',
	'AUR62037319' => 'cqu',
	'AUR62037362' => 'cqu',
	'AUR62037541' => 'cqu',
	'AUR62037853' => 'cqu',
	'AUR62038299' => 'cqu',
	'AUR62038563' => 'cqu',
	'AUR62038564' => 'cqu',
	'AUR62038594' => 'cqu',
	'AUR62038792' => 'cqu',
	'AUR62038947' => 'cqu',
	'AUR62039030' => 'cqu',
	'AUR62039231' => 'cqu',
	'AUR62039452' => 'cqu',
	'AUR62040334' => 'cqu',
	'AUR62040869' => 'cqu',
	'AUR62040870' => 'cqu',
	'AUR62040916' => 'cqu',
	'AUR62041199' => 'cqu',
	'AUR62041334' => 'cqu',
	'AUR62041608' => 'cqu',
	'AUR62041609' => 'cqu',
	'AUR62041833' => 'cqu',
	'AUR62041834' => 'cqu',
	'AUR62042054' => 'cqu',
	'AUR62042134' => 'cqu',
	'AUR62042236' => 'cqu',
	'AUR62042281' => 'cqu',
	'AUR62042593' => 'cqu',
	'AUR62042653' => 'cqu',
	'AUR62043025' => 'cqu',
	'AUR62043026' => 'cqu',
	'AUR62043063' => 'cqu',
	'AUR62043091' => 'cqu',
	'AUR62043320' => 'cqu',
	'BolC5t32558H' => 'bol',
	'CAN.G1036.12' => 'can',
	'CAN.G1432.23' => 'can',
	'CAN.G159.19' => 'can',
	'CAN.G4114.1' => 'can',
	'CAN.G492.85' => 'can',
	'CAN.G500.95' => 'can',
	'CAN.G93.31' => 'can',
	'CiPaw.04G054900' => 'cil',
	'CiPaw.05G045400' => 'cil',
	'CiPaw.15G094100' => 'cil',
	'ClCG00G000700' => 'cla',
	'ClCG00G000780' => 'cla',
	'ClCG01G012280' => 'cla',
	'ClCG02G006140' => 'cla',
	'ClCG02G009810' => 'cla',
	'ClCG03G010170' => 'cla',
	'ClCG03G010260' => 'cla',
	'ClCG04G000770' => 'cla',
	'ClCG05G013980' => 'cla',
	'ClCG06G009110' => 'cla',
	'ClCG06G009120' => 'cla',
	'ClCG08G002190' => 'cla',
	'ClCG09G013830' => 'cla',
	'ClCG10G006760' => 'cla',
	'ClCG11G007310' => 'cla',
	'COL.COLO4_16141' => 'col',
	'Cpa.g.sc202.2' => 'cpa',
	'Cpa.g.sc76.18' => 'cpa',
	'CsaV3_1G031080' => 'csa',
	'CsaV3_4G011870' => 'csa',
	'CsaV3_4G014860' => 'csa',
	'CsaV3_4G021860' => 'csa',
	'CsaV3_6G009880' => 'csa',
	'CsaV3_7G021240' => 'csa',
	'CsaV3_UNG240600' => 'csa',
	'CSS0003516' => 'camsi',
	'CSS0013023' => 'camsi',
	'CSS0017680' => 'camsi',
	'CSS0018551' => 'camsi',
	'CSS0026792' => 'camsi',
	'CSS0028271' => 'camsi',
	'CSS0033603' => 'camsi',
	'CSS0040789' => 'camsi',
	'CSS0045068' => 'camsi',
	'CSS0045803' => 'camsi',
	'Dinv10528' => 'din',
	'Duzib116G0875' => 'dzi',
	'Duzib128G0055' => 'dzi',
	'EL10Ac1g02377' => 'bvu',
	'EL10Ac1g02378' => 'bvu',
	'EL10Ac2g03486' => 'bvu',
	'EL10Ac2g03487' => 'bvu',
	'EL10Ac3g05722' => 'bvu',
	'EL10Ac3g06186' => 'bvu',
	'EL10Ac5g11258' => 'bvu',
	'EL10Ac6g13831' => 'bvu',
	'EL10Ac6g14162' => 'bvu',
	'EL10Ac6g14316' => 'bvu',
	'EL10Ac6g14317' => 'bvu',
	'EL10Ac6g14588' => 'bvu',
	'EL10Ac7g16302' => 'bvu',
	'EL10Ac7g16543' => 'bvu',
	'EL10Ac8g18762' => 'bvu',
	'EL10Ac9g20847' => 'bvu',
	'EL10As7g23731' => 'bvu',
	'EL10As7g23732' => 'bvu',
	'FvH4_1g23713' => 'fve',
	'FvH4_2g00261' => 'fve',
	'FvH4_2g00262' => 'fve',
	'FvH4_2g15681' => 'fve',
	'FvH4_2g17851' => 'fve',
	'FvH4_3g10531' => 'fve',
	'FvH4_3g33536' => 'fve',
	'FvH4_4g03471' => 'fve',
	'FvH4_4g19351' => 'fve',
	'FvH4_4g34281' => 'fve',
	'FvH4_5g03811' => 'fve',
	'FvH4_5g03812' => 'fve',
	'FvH4_5g11822' => 'fve',
	'FvH4_5g31701' => 'fve',
	'FvH4_6g12161' => 'fve',
	'FvH4_6g15222' => 'fve',
	'FvH4_6g15223' => 'fve',
	'FvH4_6g19301' => 'fve',
	'FvH4_6g33011' => 'fve',
	'FvH4_6g50161' => 'fve',
	'FvH4_7g04123' => 'fve',
	'FvH4_c7g00010' => 'fve',
	'Gorai.012G165300' => 'gra',
	'HanXRQChr00c0452g0574871' => 'han',
	'HanXRQChr01g0029471' => 'han',
	'HanXRQChr05g0133501' => 'han',
	'HanXRQChr10g0280141' => 'han',
	'HanXRQChr10g0280631' => 'han',
	'HanXRQChr13g0409991' => 'han',
	'HanXRQChr15g0468361' => 'han',
	'Hma1.2p1_0021F.1_g014270' => 'hma',
	'Hma1.2p1_0026F.1_g016730' => 'hma',
	'Hma1.2p1_0177F.1_g077930' => 'hma',
	'Hma1.2p1_0370F.1_g137540' => 'hma',
	'Hma1.2p1_0637F.1_g193600' => 'hma',
	'Hma1.2p1_1045F.1_g251360' => 'hma',
	'Hma1.2p1_1168F.1_g263120' => 'hma',
	'Hma1.2p1_1640F.1_g295040' => 'hma',
	'Hma1.2p1_2467F.1_g322660' => 'hma',
	'Hund01785' => 'sun',
	'Hund04739' => 'sun',
	'Hund07717' => 'sun',
	'Hund08060' => 'sun',
	'Hund08734' => 'sun',
	'Hund10876' => 'sun',
	'Hund14991' => 'sun',
	'Hund15051' => 'sun',
	'Hund15082' => 'sun',
	'Hund17998' => 'sun',
	'Hund18526' => 'sun',
	'Hund19828' => 'sun',
	'Hund23384' => 'sun',
	'Hund26399' => 'sun',
	'Hund28766' => 'sun',
	'Hund28768' => 'sun',
	'Lj1A487G33' => 'lonja',
	'Lj1A487G34' => 'lonja',
	'Lj1A489G15' => 'lonja',
	'Lj1C1113T3' => 'lonja',
	'Lj1C3T4' => 'lonja',
	'Lj1C763G4' => 'lonja',
	'Lj1P195T27' => 'lonja',
	'Lj1P573T13' => 'lonja',
	'Lj1P895T45' => 'lonja',
	'Lj1P995G28' => 'lonja',
	'Lj2A1125G46' => 'lonja',
	'Lj2C116T7' => 'lonja',
	'Lj2P295T30' => 'lonja',
	'Lj2P476T23' => 'lonja',
	'Lj2P603T27' => 'lonja',
	'Lj2P609T17' => 'lonja',
	'Lj2P727T24' => 'lonja',
	'Lj3C273T2' => 'lonja',
	'Lj3C644G3' => 'lonja',
	'Lj3C644G4' => 'lonja',
	'Lj3P463T4' => 'lonja',
	'Lj3P545T31' => 'lonja',
	'Lj3P820T55' => 'lonja',
	'Lj4C260T12' => 'lonja',
	'Lj4C714G8' => 'lonja',
	'Lj4P131T14' => 'lonja',
	'Lj4P131T15' => 'lonja',
	'Lj5C102G24' => 'lonja',
	'Lj5P491T3' => 'lonja',
	'Lj5P564T12' => 'lonja',
	'Lj5P786T11' => 'lonja',
	'Lj6C97T3' => 'lonja',
	'Lj8P523T19' => 'lonja',
	'Lj9A24G30' => 'lonja',
	'Lj9A424G33' => 'lonja',
	'Lj9C219G10' => 'lonja',
	'Lj9P219T12' => 'lonja',
	'Lj9P705T22' => 'lonja',
	'Lju114C4T7' => 'lonja',
	'Lju1220C5G5' => 'lonja',
	'Lju2092C1G1' => 'lonja',
	'Lju2092C1T0' => 'lonja',
	'Lju225C6G6' => 'lonja',
	'Lju427C2T0' => 'lonja',
	'Lju50C9T4' => 'lonja',
	'Lju926C12T2' => 'lonja',
	'Manes.06G126602' => 'mes',
	'Manes.13G002614' => 'mes',
	'Manes.15G192966' => 'mes',
	'Manes.17G001483' => 'mes',
	'Manes.17G022547' => 'mes',
	'Manes.18G042825' => 'mes',
	'Manes.S026816' => 'mes',
	'Manes.S027416' => 'mes',
	'MBI02_g15234_MAGBIO' => 'mbi',
	'MBI16_g35584_MAGBIO' => 'mbi',
	'MELO3C008948.2' => 'cme',
	'MELO3C010395.2' => 'cme',
	'MELO3C010396.2' => 'cme',
	'MELO3C015759.2' => 'cme',
	'MELO3C022607.2' => 'cme',
	'MELO3C028897.2' => 'cme',
	'Oeu000188.1' => 'oeu',
	'Oeu002226.1' => 'oeu',
	'Oeu003087.1' => 'oeu',
	'Oeu003392.1' => 'oeu',
	'Oeu003523.1' => 'oeu',
	'Oeu003524.1' => 'oeu',
	'Oeu003528.1' => 'oeu',
	'Oeu003547.2' => 'oeu',
	'Oeu004677.1' => 'oeu',
	'Oeu005362.1' => 'oeu',
	'Oeu005833.1' => 'oeu',
	'Oeu005834.1' => 'oeu',
	'Oeu006751.1' => 'oeu',
	'Oeu007084.1' => 'oeu',
	'Oeu007264.1' => 'oeu',
	'Oeu008153.1' => 'oeu',
	'Oeu008228.1' => 'oeu',
	'Oeu008229.1' => 'oeu',
	'Oeu009580.1' => 'oeu',
	'Oeu010110.1' => 'oeu',
	'Oeu011704.1' => 'oeu',
	'Oeu011912.1' => 'oeu',
	'Oeu012057.1' => 'oeu',
	'Oeu012157.1' => 'oeu',
	'Oeu013775.1' => 'oeu',
	'Oeu013806.1' => 'oeu',
	'Oeu016457.1' => 'oeu',
	'Oeu016803.1' => 'oeu',
	'Oeu017243.2' => 'oeu',
	'Oeu017935.1' => 'oeu',
	'Oeu020246.2' => 'oeu',
	'Oeu020990.1' => 'oeu',
	'Oeu021941.1' => 'oeu',
	'Oeu021986.1' => 'oeu',
	'Oeu023578.1' => 'oeu',
	'Oeu024242.1' => 'oeu',
	'Oeu025087.1' => 'oeu',
	'Oeu025093.1' => 'oeu',
	'Oeu025412.1' => 'oeu',
	'Oeu025520.1' => 'oeu',
	'Oeu026473.1' => 'oeu',
	'Oeu027505.1' => 'oeu',
	'Oeu027530.1' => 'oeu',
	'Oeu027794.2' => 'oeu',
	'Oeu028951.1' => 'oeu',
	'Oeu029141.1' => 'oeu',
	'Oeu029231.4' => 'oeu',
	'Oeu029388.1' => 'oeu',
	'Oeu029673.1' => 'oeu',
	'Oeu029674.1' => 'oeu',
	'Oeu029748.1' => 'oeu',
	'Oeu030224.1' => 'oeu',
	'Oeu030243.1' => 'oeu',
	'Oeu030253.1' => 'oeu',
	'Oeu030414.1' => 'oeu',
	'Oeu030415.1' => 'oeu',
	'Oeu030472.1' => 'oeu',
	'Oeu031432.1' => 'oeu',
	'Oeu031697.1' => 'oeu',
	'Oeu032030.1' => 'oeu',
	'Oeu032031.1' => 'oeu',
	'Oeu032075.1' => 'oeu',
	'Oeu032737.1' => 'oeu',
	'Oeu033407.1' => 'oeu',
	'Oeu033485.1' => 'oeu',
	'Oeu034465.1' => 'oeu',
	'Oeu034951.1' => 'oeu',
	'Oeu036281.1' => 'oeu',
	'Oeu036931.1' => 'oeu',
	'Oeu036932.1' => 'oeu',
	'Oeu037340.1' => 'oeu',
	'Oeu037611.1' => 'oeu',
	'Oeu039205.1' => 'oeu',
	'Oeu039325.1' => 'oeu',
	'Oeu040999.1' => 'oeu',
	'Oeu041244.1' => 'oeu',
	'Oeu041682.1' => 'oeu',
	'Oeu041863.1' => 'oeu',
	'Oeu042345.1' => 'oeu',
	'Oeu042346.1' => 'oeu',
	'Oeu042671.1' => 'oeu',
	'Oeu043273.1' => 'oeu',
	'Oeu043573.1' => 'oeu',
	'Oeu044071.1' => 'oeu',
	'Oeu046813.1' => 'oeu',
	'Oeu048160.1' => 'oeu',
	'Oeu048162.1' => 'oeu',
	'Oeu048282.1' => 'oeu',
	'Oeu048297.1' => 'oeu',
	'Oeu048360.1' => 'oeu',
	'Oeu048565.1' => 'oeu',
	'Oeu049268.1' => 'oeu',
	'Oeu049465.1' => 'oeu',
	'Oeu049978.1' => 'oeu',
	'Oeu050628.1' => 'oeu',
	'Oeu050727.1' => 'oeu',
	'Oeu052065.1' => 'oeu',
	'Oeu052582.1' => 'oeu',
	'Oeu053090.1' => 'oeu',
	'Oeu053644.1' => 'oeu',
	'Oeu053713.1' => 'oeu',
	'Oeu055027.1' => 'oeu',
	'Oeu057741.1' => 'oeu',
	'Oeu058973.1' => 'oeu',
	'Oeu060366.1' => 'oeu',
	'Oeu061428.1' => 'oeu',
	'Oeu062087.1' => 'oeu',
	'Oeu062537.1' => 'oeu',
	'Oeu062538.1' => 'oeu',
	'Oeu064387.1' => 'oeu',
	'PGSC0003DMG400002344' => 'stu',
	'PGSC0003DMG400004046' => 'stu',
	'PGSC0003DMG400006418' => 'stu',
	'PGSC0003DMG400008410' => 'stu',
	'PGSC0003DMG400008620' => 'stu',
	'PGSC0003DMG400009504' => 'stu',
	'PGSC0003DMG400009845' => 'stu',
	'PGSC0003DMG400011177' => 'stu',
	'PGSC0003DMG400011629' => 'stu',
	'PGSC0003DMG400013586' => 'stu',
	'PGSC0003DMG400013599' => 'stu',
	'PGSC0003DMG400014534' => 'stu',
	'PGSC0003DMG400016055' => 'stu',
	'PGSC0003DMG400016736' => 'stu',
	'PGSC0003DMG400016866' => 'stu',
	'PGSC0003DMG400017701' => 'stu',
	'PGSC0003DMG400018448' => 'stu',
	'PGSC0003DMG400020751' => 'stu',
	'PGSC0003DMG400021088' => 'stu',
	'PGSC0003DMG400021387' => 'stu',
	'PGSC0003DMG400021640' => 'stu',
	'PGSC0003DMG400021704' => 'stu',
	'PGSC0003DMG400022155' => 'stu',
	'PGSC0003DMG400023544' => 'stu',
	'PGSC0003DMG400023564' => 'stu',
	'PGSC0003DMG400028558' => 'stu',
	'PGSC0003DMG400028618' => 'stu',
	'PGSC0003DMG400029149' => 'stu',
	'PGSC0003DMG400029979' => 'stu',
	'PGSC0003DMG400030069' => 'stu',
	'PGSC0003DMG400031272' => 'stu',
	'PGSC0003DMG400034656' => 'stu',
	'PGSC0003DMG400035151' => 'stu',
	'PGSC0003DMG400035741' => 'stu',
	'PGSC0003DMG400036100' => 'stu',
	'PGSC0003DMG400037683' => 'stu',
	'PGSC0003DMG400038046' => 'stu',
	'PGSC0003DMG400040121' => 'stu',
	'PGSC0003DMG400042113' => 'stu',
	'PGSC0003DMG400042218' => 'stu',
	'PGSC0003DMG400044188' => 'stu',
	'PGSC0003DMG400044323' => 'stu',
	'PGSC0003DMG400045014' => 'stu',
	'PGSC0003DMG400045177' => 'stu',
	'PGSC0003DMG400047199' => 'stu',
	'Potri.017G071366' => 'ptr',
	'RcHm_v2.0_Chr2g0137481' => 'rch',
	'Sc20g0003180' => 'sci',
	'SEGI_00305' => 'sgi',
	'SEGI_02246' => 'sgi',
	'SEGI_03696' => 'sgi',
	'SEGI_05490' => 'sgi',
	'SEGI_05682' => 'sgi',
	'SEGI_05900' => 'sgi',
	'SEGI_06517' => 'sgi',
	'SEGI_12587' => 'sgi',
	'SEGI_13129' => 'sgi',
	'SEGI_16935' => 'sgi',
	'SEGI_18008' => 'sgi',
	'SEGI_18224' => 'sgi',
	'SEGI_20188' => 'sgi',
	'SEGI_20772' => 'sgi',
	'SEGI_20842' => 'sgi',
	'SEGI_22270' => 'sgi',
	'SEGI_22705' => 'sgi',
	'SEGI_23638' => 'sgi',
	'SEGI_23928' => 'sgi',
	'SEGI_24790' => 'sgi',
	'SEGI_28421' => 'sgi',
	'SEGI_28832' => 'sgi',
	'SEGI_29884' => 'sgi',
	'SEGI_30829' => 'sgi',
	'SEGI_35046' => 'sgi',
	'SEGI_35582' => 'sgi',
	'SEGI_37882' => 'sgi',
	'SEGI_39680' => 'sgi',
	'SEGI_40069' => 'sgi',
	'SEGI_40087' => 'sgi',
	'SEGI_41606' => 'sgi',
	'SGA_v2.0_scaffold50G18578' => 'sas',
	'SHI00293' => 'shi',
	'SHI00389' => 'shi',
	'SHI00445' => 'shi',
	'SHI01000' => 'shi',
	'SHI01503' => 'shi',
	'SHI01718' => 'shi',
	'SHI03454' => 'shi',
	'SHI03493' => 'shi',
	'SHI03494' => 'shi',
	'SHI03628' => 'shi',
	'SHI04457' => 'shi',
	'SHI04691' => 'shi',
	'SHI04829' => 'shi',
	'SHI05225' => 'shi',
	'SHI06326' => 'shi',
	'SHI06505' => 'shi',
	'SHI06770' => 'shi',
	'SHI07388' => 'shi',
	'SHI07582' => 'shi',
	'SHI07583' => 'shi',
	'SHI08271' => 'shi',
	'SHI10619' => 'shi',
	'SHI10892' => 'shi',
	'SHI10910' => 'shi',
	'SHI10911' => 'shi',
	'SHI14326' => 'shi',
	'SHI14681' => 'shi',
	'SHI15017' => 'shi',
	'SHI15096' => 'shi',
	'SHI15120' => 'shi',
	'SHI15274' => 'shi',
	'SHI16232' => 'shi',
	'SHI16811' => 'shi',
	'SHI17386' => 'shi',
	'SHI17926' => 'shi',
	'SHI18293' => 'shi',
	'SHI20489' => 'shi',
	'SHI20658' => 'shi',
	'SHI20663' => 'shi',
	'SHI21566' => 'shi',
	'SHI22547' => 'shi',
	'SHI22708' => 'shi',
	'SHI22709' => 'shi',
	'SHI22878' => 'shi',
	'SHI22879' => 'shi',
	'SHI23024' => 'shi',
	'SHI25053' => 'shi',
	'SHI25076' => 'shi',
	'SHI25116' => 'shi',
	'SHI25381' => 'shi',
	'SHI25535' => 'shi',
	'SHI25740' => 'shi',
	'SHI25991' => 'shi',
	'SHI26344' => 'shi',
	'SHI26345' => 'shi',
	'SHI27097' => 'shi',
	'SHI27140' => 'shi',
	'SHI27178' => 'shi',
	'SHI27207' => 'shi',
	'SHI27225' => 'shi',
	'SHI27734' => 'shi',
	'SHI27806' => 'shi',
	'SHI28576' => 'shi',
	'SHI29081' => 'shi',
	'SHI30038' => 'shi',
	'SHI30394' => 'shi',
	'SHI30652' => 'shi',
	'SHI32154' => 'shi',
	'SHI32205' => 'shi',
	'SHI32365' => 'shi',
	'SHI32439' => 'shi',
	'SHI32505' => 'shi',
	'SHI32626' => 'shi',
	'SHI32714' => 'shi',
	'SHI32715' => 'shi',
	'SHI32716' => 'shi',
	'SHI33118' => 'shi',
	'SHI33318' => 'shi',
	'SHI33373' => 'shi',
	'SHI33512' => 'shi',
	'SHI33625' => 'shi',
	'SHI34327' => 'shi',
	'SHI35604' => 'shi',
	'SHI36119' => 'shi',
	'SHI36120' => 'shi',
	'SHI44959' => 'shi',
	'SHI46406' => 'shi',
	'SHI48191' => 'shi',
	'SHI48192' => 'shi',
	'Solyc10g150111.1' => 'sly',
	'Solyc12g062340.2' => 'sly',
	'Sopen00g001750' => 'spe',
	'Sopen00g001820' => 'spe',
	'Sopen00g001830' => 'spe',
	'Sopen00g001890' => 'spe',
	'Sopen00g002240' => 'spe',
	'Sopen00g003950' => 'spe',
	'Sopen00g004130' => 'spe',
	'Sopen00g004810' => 'spe',
	'Sopen00g005120' => 'spe',
	'Sopen00g005190' => 'spe',
	'Sopen00g007000' => 'spe',
	'Sopen00g007210' => 'spe',
	'Sopen00g012840' => 'spe',
	'Sopen00g013060' => 'spe',
	'Sopen00g013610' => 'spe',
	'Sopen00g013630' => 'spe',
	'Sopen01g004610' => 'spe',
	'Sopen01g007660' => 'spe',
	'Sopen01g007750' => 'spe',
	'Sopen01g007760' => 'spe',
	'Sopen01g007770' => 'spe',
	'Sopen01g007860' => 'spe',
	'Sopen01g009130' => 'spe',
	'Sopen01g009820' => 'spe',
	'Sopen01g011240' => 'spe',
	'Sopen01g012740' => 'spe',
	'Sopen01g013840' => 'spe',
	'Sopen01g013850' => 'spe',
	'Sopen01g016140' => 'spe',
	'Sopen01g016150' => 'spe',
	'Sopen01g016830' => 'spe',
	'Sopen01g017260' => 'spe',
	'Sopen01g019000' => 'spe',
	'Sopen01g019690' => 'spe',
	'Sopen01g022160' => 'spe',
	'Sopen01g024000' => 'spe',
	'Sopen01g024670' => 'spe',
	'Sopen01g024770' => 'spe',
	'Sopen01g024900' => 'spe',
	'Sopen01g025130' => 'spe',
	'Sopen01g026370' => 'spe',
	'Sopen01g041640' => 'spe',
	'Sopen01g046930' => 'spe',
	'Sopen02g001360' => 'spe',
	'Sopen02g002010' => 'spe',
	'Sopen02g003600' => 'spe',
	'Sopen02g003730' => 'spe',
	'Sopen02g005430' => 'spe',
	'Sopen02g005510' => 'spe',
	'Sopen02g006840' => 'spe',
	'Sopen02g007390' => 'spe',
	'Sopen02g007420' => 'spe',
	'Sopen02g007540' => 'spe',
	'Sopen02g007920' => 'spe',
	'Sopen02g008960' => 'spe',
	'Sopen02g009450' => 'spe',
	'Sopen02g009460' => 'spe',
	'Sopen02g011320' => 'spe',
	'Sopen02g012680' => 'spe',
	'Sopen02g018090' => 'spe',
	'Sopen02g022140' => 'spe',
	'Sopen03g010330' => 'spe',
	'Sopen03g013130' => 'spe',
	'Sopen03g013180' => 'spe',
	'Sopen03g013230' => 'spe',
	'Sopen03g014110' => 'spe',
	'Sopen03g015260' => 'spe',
	'Sopen03g015790' => 'spe',
	'Sopen03g018360' => 'spe',
	'Sopen03g024470' => 'spe',
	'Sopen03g026800' => 'spe',
	'Sopen04g003180' => 'spe',
	'Sopen04g008260' => 'spe',
	'Sopen04g010320' => 'spe',
	'Sopen04g011020' => 'spe',
	'Sopen04g011200' => 'spe',
	'Sopen04g011280' => 'spe',
	'Sopen04g021910' => 'spe',
	'Sopen04g023870' => 'spe',
	'Sopen05g009880' => 'spe',
	'Sopen05g011580' => 'spe',
	'Sopen05g012230' => 'spe',
	'Sopen05g012500' => 'spe',
	'Sopen05g012560' => 'spe',
	'Sopen05g012570' => 'spe',
	'Sopen05g012760' => 'spe',
	'Sopen05g013710' => 'spe',
	'Sopen05g015050' => 'spe',
	'Sopen05g026090' => 'spe',
	'Sopen05g028020' => 'spe',
	'Sopen05g028610' => 'spe',
	'Sopen05g029300' => 'spe',
	'Sopen06g005520' => 'spe',
	'Sopen06g006750' => 'spe',
	'Sopen06g008160' => 'spe',
	'Sopen06g009120' => 'spe',
	'Sopen06g013550' => 'spe',
	'Sopen06g015340' => 'spe',
	'Sopen06g018330' => 'spe',
	'Sopen06g021630' => 'spe',
	'Sopen06g021650' => 'spe',
	'Sopen07g006730' => 'spe',
	'Sopen07g008690' => 'spe',
	'Sopen07g008700' => 'spe',
	'Sopen07g008720' => 'spe',
	'Sopen07g008870' => 'spe',
	'Sopen07g009400' => 'spe',
	'Sopen07g009410' => 'spe',
	'Sopen07g009470' => 'spe',
	'Sopen07g009540' => 'spe',
	'Sopen07g011060' => 'spe',
	'Sopen07g011110' => 'spe',
	'Sopen07g011820' => 'spe',
	'Sopen07g013260' => 'spe',
	'Sopen07g014740' => 'spe',
	'Sopen07g015160' => 'spe',
	'Sopen07g015230' => 'spe',
	'Sopen07g016240' => 'spe',
	'Sopen07g017200' => 'spe',
	'Sopen07g017810' => 'spe',
	'Sopen07g019030' => 'spe',
	'Sopen07g020430' => 'spe',
	'Sopen07g021010' => 'spe',
	'Sopen07g021340' => 'spe',
	'Sopen07g022950' => 'spe',
	'Sopen07g027860' => 'spe',
	'Sopen08g007820' => 'spe',
	'Sopen08g009330' => 'spe',
	'Sopen08g012310' => 'spe',
	'Sopen08g012560' => 'spe',
	'Sopen08g014040' => 'spe',
	'Sopen08g014650' => 'spe',
	'Sopen08g017020' => 'spe',
	'Sopen08g018300' => 'spe',
	'Sopen08g020530' => 'spe',
	'Sopen09g008590' => 'spe',
	'Sopen09g008780' => 'spe',
	'Sopen09g011540' => 'spe',
	'Sopen09g011920' => 'spe',
	'Sopen09g014170' => 'spe',
	'Sopen09g016520' => 'spe',
	'Sopen09g021030' => 'spe',
	'Sopen09g023110' => 'spe',
	'Sopen09g024750' => 'spe',
	'Sopen09g025230' => 'spe',
	'Sopen09g025600' => 'spe',
	'Sopen09g034660' => 'spe',
	'Sopen10g006700' => 'spe',
	'Sopen10g009130' => 'spe',
	'Sopen10g009140' => 'spe',
	'Sopen10g009560' => 'spe',
	'Sopen10g010340' => 'spe',
	'Sopen10g011040' => 'spe',
	'Sopen10g013650' => 'spe',
	'Sopen10g014130' => 'spe',
	'Sopen10g014140' => 'spe',
	'Sopen10g014760' => 'spe',
	'Sopen10g015080' => 'spe',
	'Sopen10g015830' => 'spe',
	'Sopen10g018240' => 'spe',
	'Sopen10g018300' => 'spe',
	'Sopen10g018350' => 'spe',
	'Sopen10g018460' => 'spe',
	'Sopen10g018670' => 'spe',
	'Sopen10g019040' => 'spe',
	'Sopen10g019330' => 'spe',
	'Sopen10g019340' => 'spe',
	'Sopen10g019360' => 'spe',
	'Sopen10g019370' => 'spe',
	'Sopen10g020620' => 'spe',
	'Sopen10g021550' => 'spe',
	'Sopen10g022160' => 'spe',
	'Sopen10g023540' => 'spe',
	'Sopen10g023570' => 'spe',
	'Sopen10g023580' => 'spe',
	'Sopen10g023600' => 'spe',
	'Sopen10g023620' => 'spe',
	'Sopen10g023650' => 'spe',
	'Sopen10g024800' => 'spe',
	'Sopen10g026170' => 'spe',
	'Sopen11g007790' => 'spe',
	'Sopen11g010170' => 'spe',
	'Sopen11g010580' => 'spe',
	'Sopen11g013420' => 'spe',
	'Sopen11g016330' => 'spe',
	'Sopen11g017010' => 'spe',
	'Sopen11g018110' => 'spe',
	'Sopen11g018960' => 'spe',
	'Sopen11g019000' => 'spe',
	'Sopen11g019970' => 'spe',
	'Sopen11g020340' => 'spe',
	'Sopen11g020970' => 'spe',
	'Sopen12g008510' => 'spe',
	'Sopen12g008910' => 'spe',
	'Sopen12g009010' => 'spe',
	'Sopen12g009120' => 'spe',
	'Sopen12g009340' => 'spe',
	'Sopen12g009580' => 'spe',
	'Sopen12g010190' => 'spe',
	'Sopen12g010320' => 'spe',
	'Sopen12g010370' => 'spe',
	'Sopen12g012140' => 'spe',
	'Sopen12g012700' => 'spe',
	'Sopen12g013490' => 'spe',
	'Sopen12g014290' => 'spe',
	'Sopen12g015060' => 'spe',
	'Sopen12g015610' => 'spe',
	'Sopen12g018380' => 'spe',
	'Sopen12g019150' => 'spe',
	'Sopen12g020560' => 'spe',
	'Sopen12g023320' => 'spe',
	'Sp3g24190' => 'spa',
	'Sp4g07270' => 'spa',
	'Sp4g07530' => 'spa',
	'Sp4g07670' => 'spa',
	'Sp6g09360' => 'spa',
	'Sp7g04180' => 'spa',
	'Sp7g04980' => 'spa',
	'Sp7g08200' => 'spa',
	'Sp7g09660' => 'spa',
	'SpUn0081_0010' => 'spa',
	'THA.LOC104803417' => 'tha',
	'THA.LOC104817059' => 'tha',
	'Thecc.01G188700' => 'tca',
	'Thecc.05G106700' => 'tca',
	'Thecc.06G068800' => 'tca',
	'Thecc.07G189100' => 'tca',
	'Thecc.09G172800' => 'tca',
	'Thhalv10023044m.g' => 'esa',
	'Thhalv10023881m.g' => 'esa',
	'Thhalv10024067m.g' => 'esa'
)
$gf_id = 'HOM05D000691'
$gf_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$gf_types_configuration = array(
	'HOMFAM' => array(
		'order' => '1',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	),
	'ORTHOFAM' => array(
		'order' => '2',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	)
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$allow_async_use = true
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D000691'
)
$data_identifier = 'HOM05D000691'
$data_type = 'gf_id'
$species_gene_counts = array(
	'amhyb' => (int) 18,
	'aly' => (int) 1,
	'atr' => (int) 21,
	'acertr' => (int) 1,
	'cqu' => (int) 90,
	'bol' => (int) 1,
	'can' => (int) 7,
	'cil' => (int) 3,
	'cla' => (int) 15,
	'col' => (int) 1,
	'cpa' => (int) 2,
	'csa' => (int) 7,
	'camsi' => (int) 10,
	'din' => (int) 1,
	'dzi' => (int) 2,
	'bvu' => (int) 18,
	'fve' => (int) 22,
	'gra' => (int) 1,
	'han' => (int) 7,
	'hma' => (int) 9,
	'sun' => (int) 16,
	'lonja' => (int) 46,
	'mes' => (int) 8,
	'mbi' => (int) 2,
	'cme' => (int) 6,
	'oeu' => (int) 110,
	'stu' => (int) 45,
	'ptr' => (int) 1,
	'rch' => (int) 1,
	'sci' => (int) 1,
	'sgi' => (int) 31,
	'sas' => (int) 1,
	'shi' => (int) 89,
	'sly' => (int) 2,
	'spe' => (int) 211,
	'spa' => (int) 10,
	'tha' => (int) 2,
	'tca' => (int) 5,
	'esa' => (int) 3
)
$gf_gene_species = 'esa'
$gf_gene_id = 'Thhalv10024067m.g'
$species_info = array(
	'species' => 'gra',
	'common_name' => 'Gossypium raimondii',
	'tax_id' => '29730',
	'version' => 'v2.1'
)
$local_species = 'gra'
$disabled = ''
$selected = ''
$num_hits = (int) 0
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Analysis/custom_tree_creation.ctp, line 27
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933

Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]
Code Context
        $disabled    = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";

        $selected    = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";

        $num_hits    = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D000691',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '827',
		'num_species' => '39'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'gf_genes' => array(
		'Ah.01g012340' => 'amhyb',
		'Ah.01g013530' => 'amhyb',
		'Ah.03g143080' => 'amhyb',
		'Ah.06g186750' => 'amhyb',
		'Ah.06g186800' => 'amhyb',
		'Ah.07g200050' => 'amhyb',
		'Ah.08g209110' => 'amhyb',
		'Ah.09g229600' => 'amhyb',
		'Ah.09g229610' => 'amhyb',
		'Ah.10g026490' => 'amhyb',
		'Ah.12g065350' => 'amhyb',
		'Ah.13g069310' => 'amhyb',
		'Ah.14g080130' => 'amhyb',
		'Ah.14g081130' => 'amhyb',
		'Ah.14g081140' => 'amhyb',
		'Ah.16g109160' => 'amhyb',
		'Ah.16g109170' => 'amhyb',
		'Ah.16g109370' => 'amhyb',
		'AL3G47720' => 'aly',
		'ATR0012G060' => 'atr',
		'ATR0026G029' => 'atr',
		'ATR0193G043' => 'atr',
		'ATR0561G076' => 'atr',
		'ATR0561G181' => 'atr',
		'ATR0568G014' => 'atr',
		'ATR0568G114' => 'atr',
		'ATR0620G039' => 'atr',
		'ATR0629G125' => 'atr',
		'ATR0661G583' => 'atr',
		'ATR0686G019' => 'atr',
		'ATR0693G232' => 'atr',
		'ATR0697G104' => 'atr',
		'ATR0789G146' => 'atr',
		'ATR0794G066' => 'atr',
		'ATR1127G127' => 'atr',
		'ATR1131G040' => 'atr',
		'ATR1134G004' => 'atr',
		'ATR1134G095' => 'atr',
		'ATR1152G110' => 'atr',
		'ATR1153G065' => 'atr',
		'Atru.chr3.2296' => 'acertr',
		'AUR62000692' => 'cqu',
		'AUR62001473' => 'cqu',
		'AUR62001812' => 'cqu',
		'AUR62002706' => 'cqu',
		'AUR62003904' => 'cqu',
		'AUR62003905' => 'cqu',
		'AUR62004840' => 'cqu',
		'AUR62005160' => 'cqu',
		'AUR62005604' => 'cqu',
		'AUR62005891' => 'cqu',
		'AUR62007290' => 'cqu',
		'AUR62007502' => 'cqu',
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		'AUR62009972' => 'cqu',
		'AUR62010488' => 'cqu',
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		'AUR62015857' => 'cqu',
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		'AUR62017430' => 'cqu',
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		'AUR62018234' => 'cqu',
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		'AUR62026199' => 'cqu',
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		'AUR62029551' => 'cqu',
		'AUR62029860' => 'cqu',
		'AUR62030164' => 'cqu',
		'AUR62031208' => 'cqu',
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		'AUR62031817' => 'cqu',
		'AUR62032126' => 'cqu',
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		'AUR62043320' => 'cqu',
		'BolC5t32558H' => 'bol',
		'CAN.G1036.12' => 'can',
		'CAN.G1432.23' => 'can',
		'CAN.G159.19' => 'can',
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		'CiPaw.04G054900' => 'cil',
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		'CiPaw.15G094100' => 'cil',
		'ClCG00G000700' => 'cla',
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		'ClCG06G009120' => 'cla',
		'ClCG08G002190' => 'cla',
		'ClCG09G013830' => 'cla',
		'ClCG10G006760' => 'cla',
		'ClCG11G007310' => 'cla',
		'COL.COLO4_16141' => 'col',
		'Cpa.g.sc202.2' => 'cpa',
		'Cpa.g.sc76.18' => 'cpa',
		'CsaV3_1G031080' => 'csa',
		'CsaV3_4G011870' => 'csa',
		'CsaV3_4G014860' => 'csa',
		'CsaV3_4G021860' => 'csa',
		'CsaV3_6G009880' => 'csa',
		'CsaV3_7G021240' => 'csa',
		'CsaV3_UNG240600' => 'csa',
		'CSS0003516' => 'camsi',
		'CSS0013023' => 'camsi',
		'CSS0017680' => 'camsi',
		'CSS0018551' => 'camsi',
		'CSS0026792' => 'camsi',
		'CSS0028271' => 'camsi',
		'CSS0033603' => 'camsi',
		'CSS0040789' => 'camsi',
		'CSS0045068' => 'camsi',
		'CSS0045803' => 'camsi',
		'Dinv10528' => 'din',
		'Duzib116G0875' => 'dzi',
		'Duzib128G0055' => 'dzi',
		'EL10Ac1g02377' => 'bvu',
		'EL10Ac1g02378' => 'bvu',
		'EL10Ac2g03486' => 'bvu',
		'EL10Ac2g03487' => 'bvu',
		'EL10Ac3g05722' => 'bvu',
		'EL10Ac3g06186' => 'bvu',
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		'EL10Ac9g20847' => 'bvu',
		'EL10As7g23731' => 'bvu',
		'EL10As7g23732' => 'bvu',
		'FvH4_1g23713' => 'fve',
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		'FvH4_2g00262' => 'fve',
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		'FvH4_3g10531' => 'fve',
		'FvH4_3g33536' => 'fve',
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		'FvH4_4g34281' => 'fve',
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		'FvH4_5g03812' => 'fve',
		'FvH4_5g11822' => 'fve',
		'FvH4_5g31701' => 'fve',
		'FvH4_6g12161' => 'fve',
		'FvH4_6g15222' => 'fve',
		'FvH4_6g15223' => 'fve',
		'FvH4_6g19301' => 'fve',
		'FvH4_6g33011' => 'fve',
		'FvH4_6g50161' => 'fve',
		'FvH4_7g04123' => 'fve',
		'FvH4_c7g00010' => 'fve',
		'Gorai.012G165300' => 'gra',
		'HanXRQChr00c0452g0574871' => 'han',
		'HanXRQChr01g0029471' => 'han',
		'HanXRQChr05g0133501' => 'han',
		'HanXRQChr10g0280141' => 'han',
		'HanXRQChr10g0280631' => 'han',
		'HanXRQChr13g0409991' => 'han',
		'HanXRQChr15g0468361' => 'han',
		'Hma1.2p1_0021F.1_g014270' => 'hma',
		'Hma1.2p1_0026F.1_g016730' => 'hma',
		'Hma1.2p1_0177F.1_g077930' => 'hma',
		'Hma1.2p1_0370F.1_g137540' => 'hma',
		'Hma1.2p1_0637F.1_g193600' => 'hma',
		'Hma1.2p1_1045F.1_g251360' => 'hma',
		'Hma1.2p1_1168F.1_g263120' => 'hma',
		'Hma1.2p1_1640F.1_g295040' => 'hma',
		'Hma1.2p1_2467F.1_g322660' => 'hma',
		'Hund01785' => 'sun',
		'Hund04739' => 'sun',
		'Hund07717' => 'sun',
		'Hund08060' => 'sun',
		'Hund08734' => 'sun',
		'Hund10876' => 'sun',
		'Hund14991' => 'sun',
		'Hund15051' => 'sun',
		'Hund15082' => 'sun',
		'Hund17998' => 'sun',
		'Hund18526' => 'sun',
		'Hund19828' => 'sun',
		'Hund23384' => 'sun',
		'Hund26399' => 'sun',
		'Hund28766' => 'sun',
		'Hund28768' => 'sun',
		'Lj1A487G33' => 'lonja',
		'Lj1A487G34' => 'lonja',
		'Lj1A489G15' => 'lonja',
		'Lj1C1113T3' => 'lonja',
		'Lj1C3T4' => 'lonja',
		'Lj1C763G4' => 'lonja',
		'Lj1P195T27' => 'lonja',
		'Lj1P573T13' => 'lonja',
		'Lj1P895T45' => 'lonja',
		'Lj1P995G28' => 'lonja',
		'Lj2A1125G46' => 'lonja',
		'Lj2C116T7' => 'lonja',
		'Lj2P295T30' => 'lonja',
		'Lj2P476T23' => 'lonja',
		'Lj2P603T27' => 'lonja',
		'Lj2P609T17' => 'lonja',
		'Lj2P727T24' => 'lonja',
		'Lj3C273T2' => 'lonja',
		'Lj3C644G3' => 'lonja',
		'Lj3C644G4' => 'lonja',
		'Lj3P463T4' => 'lonja',
		'Lj3P545T31' => 'lonja',
		'Lj3P820T55' => 'lonja',
		'Lj4C260T12' => 'lonja',
		'Lj4C714G8' => 'lonja',
		'Lj4P131T14' => 'lonja',
		'Lj4P131T15' => 'lonja',
		'Lj5C102G24' => 'lonja',
		'Lj5P491T3' => 'lonja',
		'Lj5P564T12' => 'lonja',
		'Lj5P786T11' => 'lonja',
		'Lj6C97T3' => 'lonja',
		'Lj8P523T19' => 'lonja',
		'Lj9A24G30' => 'lonja',
		'Lj9A424G33' => 'lonja',
		'Lj9C219G10' => 'lonja',
		'Lj9P219T12' => 'lonja',
		'Lj9P705T22' => 'lonja',
		'Lju114C4T7' => 'lonja',
		'Lju1220C5G5' => 'lonja',
		'Lju2092C1G1' => 'lonja',
		'Lju2092C1T0' => 'lonja',
		'Lju225C6G6' => 'lonja',
		'Lju427C2T0' => 'lonja',
		'Lju50C9T4' => 'lonja',
		'Lju926C12T2' => 'lonja',
		'Manes.06G126602' => 'mes',
		'Manes.13G002614' => 'mes',
		'Manes.15G192966' => 'mes',
		'Manes.17G001483' => 'mes',
		'Manes.17G022547' => 'mes',
		'Manes.18G042825' => 'mes',
		'Manes.S026816' => 'mes',
		'Manes.S027416' => 'mes',
		'MBI02_g15234_MAGBIO' => 'mbi',
		'MBI16_g35584_MAGBIO' => 'mbi',
		'MELO3C008948.2' => 'cme',
		'MELO3C010395.2' => 'cme',
		'MELO3C010396.2' => 'cme',
		'MELO3C015759.2' => 'cme',
		'MELO3C022607.2' => 'cme',
		'MELO3C028897.2' => 'cme',
		'Oeu000188.1' => 'oeu',
		'Oeu002226.1' => 'oeu',
		'Oeu003087.1' => 'oeu',
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		'Oeu003523.1' => 'oeu',
		'Oeu003524.1' => 'oeu',
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		'Oeu003547.2' => 'oeu',
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		'Oeu005362.1' => 'oeu',
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		'Oeu029231.4' => 'oeu',
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		'Oeu036932.1' => 'oeu',
		'Oeu037340.1' => 'oeu',
		'Oeu037611.1' => 'oeu',
		'Oeu039205.1' => 'oeu',
		'Oeu039325.1' => 'oeu',
		'Oeu040999.1' => 'oeu',
		'Oeu041244.1' => 'oeu',
		'Oeu041682.1' => 'oeu',
		'Oeu041863.1' => 'oeu',
		'Oeu042345.1' => 'oeu',
		'Oeu042346.1' => 'oeu',
		'Oeu042671.1' => 'oeu',
		'Oeu043273.1' => 'oeu',
		'Oeu043573.1' => 'oeu',
		'Oeu044071.1' => 'oeu',
		'Oeu046813.1' => 'oeu',
		'Oeu048160.1' => 'oeu',
		'Oeu048162.1' => 'oeu',
		'Oeu048282.1' => 'oeu',
		'Oeu048297.1' => 'oeu',
		'Oeu048360.1' => 'oeu',
		'Oeu048565.1' => 'oeu',
		'Oeu049268.1' => 'oeu',
		'Oeu049465.1' => 'oeu',
		'Oeu049978.1' => 'oeu',
		'Oeu050628.1' => 'oeu',
		'Oeu050727.1' => 'oeu',
		'Oeu052065.1' => 'oeu',
		'Oeu052582.1' => 'oeu',
		'Oeu053090.1' => 'oeu',
		'Oeu053644.1' => 'oeu',
		'Oeu053713.1' => 'oeu',
		'Oeu055027.1' => 'oeu',
		'Oeu057741.1' => 'oeu',
		'Oeu058973.1' => 'oeu',
		'Oeu060366.1' => 'oeu',
		'Oeu061428.1' => 'oeu',
		'Oeu062087.1' => 'oeu',
		'Oeu062537.1' => 'oeu',
		'Oeu062538.1' => 'oeu',
		'Oeu064387.1' => 'oeu',
		'PGSC0003DMG400002344' => 'stu',
		'PGSC0003DMG400004046' => 'stu',
		'PGSC0003DMG400006418' => 'stu',
		'PGSC0003DMG400008410' => 'stu',
		'PGSC0003DMG400008620' => 'stu',
		'PGSC0003DMG400009504' => 'stu',
		'PGSC0003DMG400009845' => 'stu',
		'PGSC0003DMG400011177' => 'stu',
		'PGSC0003DMG400011629' => 'stu',
		'PGSC0003DMG400013586' => 'stu',
		'PGSC0003DMG400013599' => 'stu',
		'PGSC0003DMG400014534' => 'stu',
		'PGSC0003DMG400016055' => 'stu',
		'PGSC0003DMG400016736' => 'stu',
		'PGSC0003DMG400016866' => 'stu',
		'PGSC0003DMG400017701' => 'stu',
		'PGSC0003DMG400018448' => 'stu',
		'PGSC0003DMG400020751' => 'stu',
		'PGSC0003DMG400021088' => 'stu',
		'PGSC0003DMG400021387' => 'stu',
		'PGSC0003DMG400021640' => 'stu',
		'PGSC0003DMG400021704' => 'stu',
		'PGSC0003DMG400022155' => 'stu',
		'PGSC0003DMG400023544' => 'stu',
		'PGSC0003DMG400023564' => 'stu',
		'PGSC0003DMG400028558' => 'stu',
		'PGSC0003DMG400028618' => 'stu',
		'PGSC0003DMG400029149' => 'stu',
		'PGSC0003DMG400029979' => 'stu',
		'PGSC0003DMG400030069' => 'stu',
		'PGSC0003DMG400031272' => 'stu',
		'PGSC0003DMG400034656' => 'stu',
		'PGSC0003DMG400035151' => 'stu',
		'PGSC0003DMG400035741' => 'stu',
		'PGSC0003DMG400036100' => 'stu',
		'PGSC0003DMG400037683' => 'stu',
		'PGSC0003DMG400038046' => 'stu',
		'PGSC0003DMG400040121' => 'stu',
		'PGSC0003DMG400042113' => 'stu',
		'PGSC0003DMG400042218' => 'stu',
		'PGSC0003DMG400044188' => 'stu',
		'PGSC0003DMG400044323' => 'stu',
		'PGSC0003DMG400045014' => 'stu',
		'PGSC0003DMG400045177' => 'stu',
		'PGSC0003DMG400047199' => 'stu',
		'Potri.017G071366' => 'ptr',
		'RcHm_v2.0_Chr2g0137481' => 'rch',
		'Sc20g0003180' => 'sci',
		'SEGI_00305' => 'sgi',
		'SEGI_02246' => 'sgi',
		'SEGI_03696' => 'sgi',
		'SEGI_05490' => 'sgi',
		'SEGI_05682' => 'sgi',
		'SEGI_05900' => 'sgi',
		'SEGI_06517' => 'sgi',
		'SEGI_12587' => 'sgi',
		'SEGI_13129' => 'sgi',
		'SEGI_16935' => 'sgi',
		'SEGI_18008' => 'sgi',
		'SEGI_18224' => 'sgi',
		'SEGI_20188' => 'sgi',
		'SEGI_20772' => 'sgi',
		'SEGI_20842' => 'sgi',
		'SEGI_22270' => 'sgi',
		'SEGI_22705' => 'sgi',
		'SEGI_23638' => 'sgi',
		'SEGI_23928' => 'sgi',
		'SEGI_24790' => 'sgi',
		'SEGI_28421' => 'sgi',
		'SEGI_28832' => 'sgi',
		'SEGI_29884' => 'sgi',
		'SEGI_30829' => 'sgi',
		'SEGI_35046' => 'sgi',
		'SEGI_35582' => 'sgi',
		'SEGI_37882' => 'sgi',
		'SEGI_39680' => 'sgi',
		'SEGI_40069' => 'sgi',
		'SEGI_40087' => 'sgi',
		'SEGI_41606' => 'sgi',
		'SGA_v2.0_scaffold50G18578' => 'sas',
		'SHI00293' => 'shi',
		'SHI00389' => 'shi',
		'SHI00445' => 'shi',
		'SHI01000' => 'shi',
		'SHI01503' => 'shi',
		'SHI01718' => 'shi',
		'SHI03454' => 'shi',
		'SHI03493' => 'shi',
		'SHI03494' => 'shi',
		'SHI03628' => 'shi',
		'SHI04457' => 'shi',
		'SHI04691' => 'shi',
		'SHI04829' => 'shi',
		'SHI05225' => 'shi',
		'SHI06326' => 'shi',
		'SHI06505' => 'shi',
		'SHI06770' => 'shi',
		'SHI07388' => 'shi',
		'SHI07582' => 'shi',
		'SHI07583' => 'shi',
		'SHI08271' => 'shi',
		'SHI10619' => 'shi',
		'SHI10892' => 'shi',
		'SHI10910' => 'shi',
		'SHI10911' => 'shi',
		'SHI14326' => 'shi',
		'SHI14681' => 'shi',
		'SHI15017' => 'shi',
		'SHI15096' => 'shi',
		'SHI15120' => 'shi',
		'SHI15274' => 'shi',
		'SHI16232' => 'shi',
		'SHI16811' => 'shi',
		'SHI17386' => 'shi',
		'SHI17926' => 'shi',
		'SHI18293' => 'shi',
		'SHI20489' => 'shi',
		'SHI20658' => 'shi',
		'SHI20663' => 'shi',
		'SHI21566' => 'shi',
		'SHI22547' => 'shi',
		'SHI22708' => 'shi',
		'SHI22709' => 'shi',
		'SHI22878' => 'shi',
		'SHI22879' => 'shi',
		'SHI23024' => 'shi',
		'SHI25053' => 'shi',
		'SHI25076' => 'shi',
		'SHI25116' => 'shi',
		'SHI25381' => 'shi',
		'SHI25535' => 'shi',
		'SHI25740' => 'shi',
		'SHI25991' => 'shi',
		'SHI26344' => 'shi',
		'SHI26345' => 'shi',
		'SHI27097' => 'shi',
		'SHI27140' => 'shi',
		'SHI27178' => 'shi',
		'SHI27207' => 'shi',
		'SHI27225' => 'shi',
		'SHI27734' => 'shi',
		'SHI27806' => 'shi',
		'SHI28576' => 'shi',
		'SHI29081' => 'shi',
		'SHI30038' => 'shi',
		'SHI30394' => 'shi',
		'SHI30652' => 'shi',
		'SHI32154' => 'shi',
		'SHI32205' => 'shi',
		'SHI32365' => 'shi',
		'SHI32439' => 'shi',
		'SHI32505' => 'shi',
		'SHI32626' => 'shi',
		'SHI32714' => 'shi',
		'SHI32715' => 'shi',
		'SHI32716' => 'shi',
		'SHI33118' => 'shi',
		'SHI33318' => 'shi',
		'SHI33373' => 'shi',
		'SHI33512' => 'shi',
		'SHI33625' => 'shi',
		'SHI34327' => 'shi',
		'SHI35604' => 'shi',
		'SHI36119' => 'shi',
		'SHI36120' => 'shi',
		'SHI44959' => 'shi',
		'SHI46406' => 'shi',
		'SHI48191' => 'shi',
		'SHI48192' => 'shi',
		'Solyc10g150111.1' => 'sly',
		'Solyc12g062340.2' => 'sly',
		'Sopen00g001750' => 'spe',
		'Sopen00g001820' => 'spe',
		'Sopen00g001830' => 'spe',
		'Sopen00g001890' => 'spe',
		'Sopen00g002240' => 'spe',
		'Sopen00g003950' => 'spe',
		'Sopen00g004130' => 'spe',
		'Sopen00g004810' => 'spe',
		'Sopen00g005120' => 'spe',
		'Sopen00g005190' => 'spe',
		'Sopen00g007000' => 'spe',
		'Sopen00g007210' => 'spe',
		'Sopen00g012840' => 'spe',
		'Sopen00g013060' => 'spe',
		'Sopen00g013610' => 'spe',
		'Sopen00g013630' => 'spe',
		'Sopen01g004610' => 'spe',
		'Sopen01g007660' => 'spe',
		'Sopen01g007750' => 'spe',
		'Sopen01g007760' => 'spe',
		'Sopen01g007770' => 'spe',
		'Sopen01g007860' => 'spe',
		'Sopen01g009130' => 'spe',
		'Sopen01g009820' => 'spe',
		'Sopen01g011240' => 'spe',
		'Sopen01g012740' => 'spe',
		'Sopen01g013840' => 'spe',
		'Sopen01g013850' => 'spe',
		'Sopen01g016140' => 'spe',
		'Sopen01g016150' => 'spe',
		'Sopen01g016830' => 'spe',
		'Sopen01g017260' => 'spe',
		'Sopen01g019000' => 'spe',
		'Sopen01g019690' => 'spe',
		'Sopen01g022160' => 'spe',
		'Sopen01g024000' => 'spe',
		'Sopen01g024670' => 'spe',
		'Sopen01g024770' => 'spe',
		'Sopen01g024900' => 'spe',
		'Sopen01g025130' => 'spe',
		'Sopen01g026370' => 'spe',
		'Sopen01g041640' => 'spe',
		'Sopen01g046930' => 'spe',
		'Sopen02g001360' => 'spe',
		'Sopen02g002010' => 'spe',
		'Sopen02g003600' => 'spe',
		'Sopen02g003730' => 'spe',
		'Sopen02g005430' => 'spe',
		'Sopen02g005510' => 'spe',
		'Sopen02g006840' => 'spe',
		'Sopen02g007390' => 'spe',
		'Sopen02g007420' => 'spe',
		'Sopen02g007540' => 'spe',
		'Sopen02g007920' => 'spe',
		'Sopen02g008960' => 'spe',
		'Sopen02g009450' => 'spe',
		'Sopen02g009460' => 'spe',
		'Sopen02g011320' => 'spe',
		'Sopen02g012680' => 'spe',
		'Sopen02g018090' => 'spe',
		'Sopen02g022140' => 'spe',
		'Sopen03g010330' => 'spe',
		'Sopen03g013130' => 'spe',
		'Sopen03g013180' => 'spe',
		'Sopen03g013230' => 'spe',
		'Sopen03g014110' => 'spe',
		'Sopen03g015260' => 'spe',
		'Sopen03g015790' => 'spe',
		'Sopen03g018360' => 'spe',
		'Sopen03g024470' => 'spe',
		'Sopen03g026800' => 'spe',
		'Sopen04g003180' => 'spe',
		'Sopen04g008260' => 'spe',
		'Sopen04g010320' => 'spe',
		'Sopen04g011020' => 'spe',
		'Sopen04g011200' => 'spe',
		'Sopen04g011280' => 'spe',
		'Sopen04g021910' => 'spe',
		'Sopen04g023870' => 'spe',
		'Sopen05g009880' => 'spe',
		'Sopen05g011580' => 'spe',
		'Sopen05g012230' => 'spe',
		'Sopen05g012500' => 'spe',
		'Sopen05g012560' => 'spe',
		'Sopen05g012570' => 'spe',
		'Sopen05g012760' => 'spe',
		'Sopen05g013710' => 'spe',
		'Sopen05g015050' => 'spe',
		'Sopen05g026090' => 'spe',
		'Sopen05g028020' => 'spe',
		'Sopen05g028610' => 'spe',
		'Sopen05g029300' => 'spe',
		'Sopen06g005520' => 'spe',
		'Sopen06g006750' => 'spe',
		'Sopen06g008160' => 'spe',
		'Sopen06g009120' => 'spe',
		'Sopen06g013550' => 'spe',
		'Sopen06g015340' => 'spe',
		'Sopen06g018330' => 'spe',
		'Sopen06g021630' => 'spe',
		'Sopen06g021650' => 'spe',
		'Sopen07g006730' => 'spe',
		'Sopen07g008690' => 'spe',
		'Sopen07g008700' => 'spe',
		'Sopen07g008720' => 'spe',
		'Sopen07g008870' => 'spe',
		'Sopen07g009400' => 'spe',
		'Sopen07g009410' => 'spe',
		'Sopen07g009470' => 'spe',
		'Sopen07g009540' => 'spe',
		'Sopen07g011060' => 'spe',
		'Sopen07g011110' => 'spe',
		'Sopen07g011820' => 'spe',
		'Sopen07g013260' => 'spe',
		'Sopen07g014740' => 'spe',
		'Sopen07g015160' => 'spe',
		'Sopen07g015230' => 'spe',
		'Sopen07g016240' => 'spe',
		'Sopen07g017200' => 'spe',
		'Sopen07g017810' => 'spe',
		'Sopen07g019030' => 'spe',
		'Sopen07g020430' => 'spe',
		'Sopen07g021010' => 'spe',
		'Sopen07g021340' => 'spe',
		'Sopen07g022950' => 'spe',
		'Sopen07g027860' => 'spe',
		'Sopen08g007820' => 'spe',
		'Sopen08g009330' => 'spe',
		'Sopen08g012310' => 'spe',
		'Sopen08g012560' => 'spe',
		'Sopen08g014040' => 'spe',
		'Sopen08g014650' => 'spe',
		'Sopen08g017020' => 'spe',
		'Sopen08g018300' => 'spe',
		'Sopen08g020530' => 'spe',
		'Sopen09g008590' => 'spe',
		'Sopen09g008780' => 'spe',
		'Sopen09g011540' => 'spe',
		'Sopen09g011920' => 'spe',
		'Sopen09g014170' => 'spe',
		'Sopen09g016520' => 'spe',
		'Sopen09g021030' => 'spe',
		'Sopen09g023110' => 'spe',
		'Sopen09g024750' => 'spe',
		'Sopen09g025230' => 'spe',
		'Sopen09g025600' => 'spe',
		'Sopen09g034660' => 'spe',
		'Sopen10g006700' => 'spe',
		'Sopen10g009130' => 'spe',
		'Sopen10g009140' => 'spe',
		'Sopen10g009560' => 'spe',
		'Sopen10g010340' => 'spe',
		'Sopen10g011040' => 'spe',
		'Sopen10g013650' => 'spe',
		'Sopen10g014130' => 'spe',
		'Sopen10g014140' => 'spe',
		'Sopen10g014760' => 'spe',
		'Sopen10g015080' => 'spe',
		'Sopen10g015830' => 'spe',
		'Sopen10g018240' => 'spe',
		'Sopen10g018300' => 'spe',
		'Sopen10g018350' => 'spe',
		'Sopen10g018460' => 'spe',
		'Sopen10g018670' => 'spe',
		'Sopen10g019040' => 'spe',
		'Sopen10g019330' => 'spe',
		'Sopen10g019340' => 'spe',
		'Sopen10g019360' => 'spe',
		'Sopen10g019370' => 'spe',
		'Sopen10g020620' => 'spe',
		'Sopen10g021550' => 'spe',
		'Sopen10g022160' => 'spe',
		'Sopen10g023540' => 'spe',
		'Sopen10g023570' => 'spe',
		'Sopen10g023580' => 'spe',
		'Sopen10g023600' => 'spe',
		'Sopen10g023620' => 'spe',
		'Sopen10g023650' => 'spe',
		'Sopen10g024800' => 'spe',
		'Sopen10g026170' => 'spe',
		'Sopen11g007790' => 'spe',
		'Sopen11g010170' => 'spe',
		'Sopen11g010580' => 'spe',
		'Sopen11g013420' => 'spe',
		'Sopen11g016330' => 'spe',
		'Sopen11g017010' => 'spe',
		'Sopen11g018110' => 'spe',
		'Sopen11g018960' => 'spe',
		'Sopen11g019000' => 'spe',
		'Sopen11g019970' => 'spe',
		'Sopen11g020340' => 'spe',
		'Sopen11g020970' => 'spe',
		'Sopen12g008510' => 'spe',
		'Sopen12g008910' => 'spe',
		'Sopen12g009010' => 'spe',
		'Sopen12g009120' => 'spe',
		'Sopen12g009340' => 'spe',
		'Sopen12g009580' => 'spe',
		'Sopen12g010190' => 'spe',
		'Sopen12g010320' => 'spe',
		'Sopen12g010370' => 'spe',
		'Sopen12g012140' => 'spe',
		'Sopen12g012700' => 'spe',
		'Sopen12g013490' => 'spe',
		'Sopen12g014290' => 'spe',
		'Sopen12g015060' => 'spe',
		'Sopen12g015610' => 'spe',
		'Sopen12g018380' => 'spe',
		'Sopen12g019150' => 'spe',
		'Sopen12g020560' => 'spe',
		'Sopen12g023320' => 'spe',
		'Sp3g24190' => 'spa',
		'Sp4g07270' => 'spa',
		'Sp4g07530' => 'spa',
		'Sp4g07670' => 'spa',
		'Sp6g09360' => 'spa',
		'Sp7g04180' => 'spa',
		'Sp7g04980' => 'spa',
		'Sp7g08200' => 'spa',
		'Sp7g09660' => 'spa',
		'SpUn0081_0010' => 'spa',
		'THA.LOC104803417' => 'tha',
		'THA.LOC104817059' => 'tha',
		'Thecc.01G188700' => 'tca',
		'Thecc.05G106700' => 'tca',
		'Thecc.06G068800' => 'tca',
		'Thecc.07G189100' => 'tca',
		'Thecc.09G172800' => 'tca',
		'Thhalv10023044m.g' => 'esa',
		'Thhalv10023881m.g' => 'esa',
		'Thhalv10024067m.g' => 'esa'
	),
	'gf_id' => 'HOM05D000691',
	'gf_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'gf_types_configuration' => array(
		'HOMFAM' => array(
			'order' => '1',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		),
		'ORTHOFAM' => array(
			'order' => '2',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		)
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'allow_async_use' => true,
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D000691'
	),
	'data_identifier' => 'HOM05D000691',
	'data_type' => 'gf_id'
)
$sidebar_info = array(
	'gf_id' => 'HOM05D000691',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '827',
	'num_species' => '39'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$gf_genes = array(
	'Ah.01g012340' => 'amhyb',
	'Ah.01g013530' => 'amhyb',
	'Ah.03g143080' => 'amhyb',
	'Ah.06g186750' => 'amhyb',
	'Ah.06g186800' => 'amhyb',
	'Ah.07g200050' => 'amhyb',
	'Ah.08g209110' => 'amhyb',
	'Ah.09g229600' => 'amhyb',
	'Ah.09g229610' => 'amhyb',
	'Ah.10g026490' => 'amhyb',
	'Ah.12g065350' => 'amhyb',
	'Ah.13g069310' => 'amhyb',
	'Ah.14g080130' => 'amhyb',
	'Ah.14g081130' => 'amhyb',
	'Ah.14g081140' => 'amhyb',
	'Ah.16g109160' => 'amhyb',
	'Ah.16g109170' => 'amhyb',
	'Ah.16g109370' => 'amhyb',
	'AL3G47720' => 'aly',
	'ATR0012G060' => 'atr',
	'ATR0026G029' => 'atr',
	'ATR0193G043' => 'atr',
	'ATR0561G076' => 'atr',
	'ATR0561G181' => 'atr',
	'ATR0568G014' => 'atr',
	'ATR0568G114' => 'atr',
	'ATR0620G039' => 'atr',
	'ATR0629G125' => 'atr',
	'ATR0661G583' => 'atr',
	'ATR0686G019' => 'atr',
	'ATR0693G232' => 'atr',
	'ATR0697G104' => 'atr',
	'ATR0789G146' => 'atr',
	'ATR0794G066' => 'atr',
	'ATR1127G127' => 'atr',
	'ATR1131G040' => 'atr',
	'ATR1134G004' => 'atr',
	'ATR1134G095' => 'atr',
	'ATR1152G110' => 'atr',
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	'SHI15120' => 'shi',
	'SHI15274' => 'shi',
	'SHI16232' => 'shi',
	'SHI16811' => 'shi',
	'SHI17386' => 'shi',
	'SHI17926' => 'shi',
	'SHI18293' => 'shi',
	'SHI20489' => 'shi',
	'SHI20658' => 'shi',
	'SHI20663' => 'shi',
	'SHI21566' => 'shi',
	'SHI22547' => 'shi',
	'SHI22708' => 'shi',
	'SHI22709' => 'shi',
	'SHI22878' => 'shi',
	'SHI22879' => 'shi',
	'SHI23024' => 'shi',
	'SHI25053' => 'shi',
	'SHI25076' => 'shi',
	'SHI25116' => 'shi',
	'SHI25381' => 'shi',
	'SHI25535' => 'shi',
	'SHI25740' => 'shi',
	'SHI25991' => 'shi',
	'SHI26344' => 'shi',
	'SHI26345' => 'shi',
	'SHI27097' => 'shi',
	'SHI27140' => 'shi',
	'SHI27178' => 'shi',
	'SHI27207' => 'shi',
	'SHI27225' => 'shi',
	'SHI27734' => 'shi',
	'SHI27806' => 'shi',
	'SHI28576' => 'shi',
	'SHI29081' => 'shi',
	'SHI30038' => 'shi',
	'SHI30394' => 'shi',
	'SHI30652' => 'shi',
	'SHI32154' => 'shi',
	'SHI32205' => 'shi',
	'SHI32365' => 'shi',
	'SHI32439' => 'shi',
	'SHI32505' => 'shi',
	'SHI32626' => 'shi',
	'SHI32714' => 'shi',
	'SHI32715' => 'shi',
	'SHI32716' => 'shi',
	'SHI33118' => 'shi',
	'SHI33318' => 'shi',
	'SHI33373' => 'shi',
	'SHI33512' => 'shi',
	'SHI33625' => 'shi',
	'SHI34327' => 'shi',
	'SHI35604' => 'shi',
	'SHI36119' => 'shi',
	'SHI36120' => 'shi',
	'SHI44959' => 'shi',
	'SHI46406' => 'shi',
	'SHI48191' => 'shi',
	'SHI48192' => 'shi',
	'Solyc10g150111.1' => 'sly',
	'Solyc12g062340.2' => 'sly',
	'Sopen00g001750' => 'spe',
	'Sopen00g001820' => 'spe',
	'Sopen00g001830' => 'spe',
	'Sopen00g001890' => 'spe',
	'Sopen00g002240' => 'spe',
	'Sopen00g003950' => 'spe',
	'Sopen00g004130' => 'spe',
	'Sopen00g004810' => 'spe',
	'Sopen00g005120' => 'spe',
	'Sopen00g005190' => 'spe',
	'Sopen00g007000' => 'spe',
	'Sopen00g007210' => 'spe',
	'Sopen00g012840' => 'spe',
	'Sopen00g013060' => 'spe',
	'Sopen00g013610' => 'spe',
	'Sopen00g013630' => 'spe',
	'Sopen01g004610' => 'spe',
	'Sopen01g007660' => 'spe',
	'Sopen01g007750' => 'spe',
	'Sopen01g007760' => 'spe',
	'Sopen01g007770' => 'spe',
	'Sopen01g007860' => 'spe',
	'Sopen01g009130' => 'spe',
	'Sopen01g009820' => 'spe',
	'Sopen01g011240' => 'spe',
	'Sopen01g012740' => 'spe',
	'Sopen01g013840' => 'spe',
	'Sopen01g013850' => 'spe',
	'Sopen01g016140' => 'spe',
	'Sopen01g016150' => 'spe',
	'Sopen01g016830' => 'spe',
	'Sopen01g017260' => 'spe',
	'Sopen01g019000' => 'spe',
	'Sopen01g019690' => 'spe',
	'Sopen01g022160' => 'spe',
	'Sopen01g024000' => 'spe',
	'Sopen01g024670' => 'spe',
	'Sopen01g024770' => 'spe',
	'Sopen01g024900' => 'spe',
	'Sopen01g025130' => 'spe',
	'Sopen01g026370' => 'spe',
	'Sopen01g041640' => 'spe',
	'Sopen01g046930' => 'spe',
	'Sopen02g001360' => 'spe',
	'Sopen02g002010' => 'spe',
	'Sopen02g003600' => 'spe',
	'Sopen02g003730' => 'spe',
	'Sopen02g005430' => 'spe',
	'Sopen02g005510' => 'spe',
	'Sopen02g006840' => 'spe',
	'Sopen02g007390' => 'spe',
	'Sopen02g007420' => 'spe',
	'Sopen02g007540' => 'spe',
	'Sopen02g007920' => 'spe',
	'Sopen02g008960' => 'spe',
	'Sopen02g009450' => 'spe',
	'Sopen02g009460' => 'spe',
	'Sopen02g011320' => 'spe',
	'Sopen02g012680' => 'spe',
	'Sopen02g018090' => 'spe',
	'Sopen02g022140' => 'spe',
	'Sopen03g010330' => 'spe',
	'Sopen03g013130' => 'spe',
	'Sopen03g013180' => 'spe',
	'Sopen03g013230' => 'spe',
	'Sopen03g014110' => 'spe',
	'Sopen03g015260' => 'spe',
	'Sopen03g015790' => 'spe',
	'Sopen03g018360' => 'spe',
	'Sopen03g024470' => 'spe',
	'Sopen03g026800' => 'spe',
	'Sopen04g003180' => 'spe',
	'Sopen04g008260' => 'spe',
	'Sopen04g010320' => 'spe',
	'Sopen04g011020' => 'spe',
	'Sopen04g011200' => 'spe',
	'Sopen04g011280' => 'spe',
	'Sopen04g021910' => 'spe',
	'Sopen04g023870' => 'spe',
	'Sopen05g009880' => 'spe',
	'Sopen05g011580' => 'spe',
	'Sopen05g012230' => 'spe',
	'Sopen05g012500' => 'spe',
	'Sopen05g012560' => 'spe',
	'Sopen05g012570' => 'spe',
	'Sopen05g012760' => 'spe',
	'Sopen05g013710' => 'spe',
	'Sopen05g015050' => 'spe',
	'Sopen05g026090' => 'spe',
	'Sopen05g028020' => 'spe',
	'Sopen05g028610' => 'spe',
	'Sopen05g029300' => 'spe',
	'Sopen06g005520' => 'spe',
	'Sopen06g006750' => 'spe',
	'Sopen06g008160' => 'spe',
	'Sopen06g009120' => 'spe',
	'Sopen06g013550' => 'spe',
	'Sopen06g015340' => 'spe',
	'Sopen06g018330' => 'spe',
	'Sopen06g021630' => 'spe',
	'Sopen06g021650' => 'spe',
	'Sopen07g006730' => 'spe',
	'Sopen07g008690' => 'spe',
	'Sopen07g008700' => 'spe',
	'Sopen07g008720' => 'spe',
	'Sopen07g008870' => 'spe',
	'Sopen07g009400' => 'spe',
	'Sopen07g009410' => 'spe',
	'Sopen07g009470' => 'spe',
	'Sopen07g009540' => 'spe',
	'Sopen07g011060' => 'spe',
	'Sopen07g011110' => 'spe',
	'Sopen07g011820' => 'spe',
	'Sopen07g013260' => 'spe',
	'Sopen07g014740' => 'spe',
	'Sopen07g015160' => 'spe',
	'Sopen07g015230' => 'spe',
	'Sopen07g016240' => 'spe',
	'Sopen07g017200' => 'spe',
	'Sopen07g017810' => 'spe',
	'Sopen07g019030' => 'spe',
	'Sopen07g020430' => 'spe',
	'Sopen07g021010' => 'spe',
	'Sopen07g021340' => 'spe',
	'Sopen07g022950' => 'spe',
	'Sopen07g027860' => 'spe',
	'Sopen08g007820' => 'spe',
	'Sopen08g009330' => 'spe',
	'Sopen08g012310' => 'spe',
	'Sopen08g012560' => 'spe',
	'Sopen08g014040' => 'spe',
	'Sopen08g014650' => 'spe',
	'Sopen08g017020' => 'spe',
	'Sopen08g018300' => 'spe',
	'Sopen08g020530' => 'spe',
	'Sopen09g008590' => 'spe',
	'Sopen09g008780' => 'spe',
	'Sopen09g011540' => 'spe',
	'Sopen09g011920' => 'spe',
	'Sopen09g014170' => 'spe',
	'Sopen09g016520' => 'spe',
	'Sopen09g021030' => 'spe',
	'Sopen09g023110' => 'spe',
	'Sopen09g024750' => 'spe',
	'Sopen09g025230' => 'spe',
	'Sopen09g025600' => 'spe',
	'Sopen09g034660' => 'spe',
	'Sopen10g006700' => 'spe',
	'Sopen10g009130' => 'spe',
	'Sopen10g009140' => 'spe',
	'Sopen10g009560' => 'spe',
	'Sopen10g010340' => 'spe',
	'Sopen10g011040' => 'spe',
	'Sopen10g013650' => 'spe',
	'Sopen10g014130' => 'spe',
	'Sopen10g014140' => 'spe',
	'Sopen10g014760' => 'spe',
	'Sopen10g015080' => 'spe',
	'Sopen10g015830' => 'spe',
	'Sopen10g018240' => 'spe',
	'Sopen10g018300' => 'spe',
	'Sopen10g018350' => 'spe',
	'Sopen10g018460' => 'spe',
	'Sopen10g018670' => 'spe',
	'Sopen10g019040' => 'spe',
	'Sopen10g019330' => 'spe',
	'Sopen10g019340' => 'spe',
	'Sopen10g019360' => 'spe',
	'Sopen10g019370' => 'spe',
	'Sopen10g020620' => 'spe',
	'Sopen10g021550' => 'spe',
	'Sopen10g022160' => 'spe',
	'Sopen10g023540' => 'spe',
	'Sopen10g023570' => 'spe',
	'Sopen10g023580' => 'spe',
	'Sopen10g023600' => 'spe',
	'Sopen10g023620' => 'spe',
	'Sopen10g023650' => 'spe',
	'Sopen10g024800' => 'spe',
	'Sopen10g026170' => 'spe',
	'Sopen11g007790' => 'spe',
	'Sopen11g010170' => 'spe',
	'Sopen11g010580' => 'spe',
	'Sopen11g013420' => 'spe',
	'Sopen11g016330' => 'spe',
	'Sopen11g017010' => 'spe',
	'Sopen11g018110' => 'spe',
	'Sopen11g018960' => 'spe',
	'Sopen11g019000' => 'spe',
	'Sopen11g019970' => 'spe',
	'Sopen11g020340' => 'spe',
	'Sopen11g020970' => 'spe',
	'Sopen12g008510' => 'spe',
	'Sopen12g008910' => 'spe',
	'Sopen12g009010' => 'spe',
	'Sopen12g009120' => 'spe',
	'Sopen12g009340' => 'spe',
	'Sopen12g009580' => 'spe',
	'Sopen12g010190' => 'spe',
	'Sopen12g010320' => 'spe',
	'Sopen12g010370' => 'spe',
	'Sopen12g012140' => 'spe',
	'Sopen12g012700' => 'spe',
	'Sopen12g013490' => 'spe',
	'Sopen12g014290' => 'spe',
	'Sopen12g015060' => 'spe',
	'Sopen12g015610' => 'spe',
	'Sopen12g018380' => 'spe',
	'Sopen12g019150' => 'spe',
	'Sopen12g020560' => 'spe',
	'Sopen12g023320' => 'spe',
	'Sp3g24190' => 'spa',
	'Sp4g07270' => 'spa',
	'Sp4g07530' => 'spa',
	'Sp4g07670' => 'spa',
	'Sp6g09360' => 'spa',
	'Sp7g04180' => 'spa',
	'Sp7g04980' => 'spa',
	'Sp7g08200' => 'spa',
	'Sp7g09660' => 'spa',
	'SpUn0081_0010' => 'spa',
	'THA.LOC104803417' => 'tha',
	'THA.LOC104817059' => 'tha',
	'Thecc.01G188700' => 'tca',
	'Thecc.05G106700' => 'tca',
	'Thecc.06G068800' => 'tca',
	'Thecc.07G189100' => 'tca',
	'Thecc.09G172800' => 'tca',
	'Thhalv10023044m.g' => 'esa',
	'Thhalv10023881m.g' => 'esa',
	'Thhalv10024067m.g' => 'esa'
)
$gf_id = 'HOM05D000691'
$gf_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$gf_types_configuration = array(
	'HOMFAM' => array(
		'order' => '1',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	),
	'ORTHOFAM' => array(
		'order' => '2',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	)
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$allow_async_use = true
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D000691'
)
$data_identifier = 'HOM05D000691'
$data_type = 'gf_id'
$species_gene_counts = array(
	'amhyb' => (int) 18,
	'aly' => (int) 1,
	'atr' => (int) 21,
	'acertr' => (int) 1,
	'cqu' => (int) 90,
	'bol' => (int) 1,
	'can' => (int) 7,
	'cil' => (int) 3,
	'cla' => (int) 15,
	'col' => (int) 1,
	'cpa' => (int) 2,
	'csa' => (int) 7,
	'camsi' => (int) 10,
	'din' => (int) 1,
	'dzi' => (int) 2,
	'bvu' => (int) 18,
	'fve' => (int) 22,
	'gra' => (int) 1,
	'han' => (int) 7,
	'hma' => (int) 9,
	'sun' => (int) 16,
	'lonja' => (int) 46,
	'mes' => (int) 8,
	'mbi' => (int) 2,
	'cme' => (int) 6,
	'oeu' => (int) 110,
	'stu' => (int) 45,
	'ptr' => (int) 1,
	'rch' => (int) 1,
	'sci' => (int) 1,
	'sgi' => (int) 31,
	'sas' => (int) 1,
	'shi' => (int) 89,
	'sly' => (int) 2,
	'spe' => (int) 211,
	'spa' => (int) 10,
	'tha' => (int) 2,
	'tca' => (int) 5,
	'esa' => (int) 3
)
$gf_gene_species = 'esa'
$gf_gene_id = 'Thhalv10024067m.g'
$species_info = array(
	'species' => 'han',
	'common_name' => 'Helianthus annuus',
	'tax_id' => '4232',
	'version' => 'r1.2'
)
$local_species = 'han'
$disabled = ''
$selected = ''
$num_hits = (int) 1
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Analysis/custom_tree_creation.ctp, line 27
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933

Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]
Code Context
        $disabled    = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";

        $selected    = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";

        $num_hits    = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D000691',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '827',
		'num_species' => '39'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'gf_genes' => array(
		'Ah.01g012340' => 'amhyb',
		'Ah.01g013530' => 'amhyb',
		'Ah.03g143080' => 'amhyb',
		'Ah.06g186750' => 'amhyb',
		'Ah.06g186800' => 'amhyb',
		'Ah.07g200050' => 'amhyb',
		'Ah.08g209110' => 'amhyb',
		'Ah.09g229600' => 'amhyb',
		'Ah.09g229610' => 'amhyb',
		'Ah.10g026490' => 'amhyb',
		'Ah.12g065350' => 'amhyb',
		'Ah.13g069310' => 'amhyb',
		'Ah.14g080130' => 'amhyb',
		'Ah.14g081130' => 'amhyb',
		'Ah.14g081140' => 'amhyb',
		'Ah.16g109160' => 'amhyb',
		'Ah.16g109170' => 'amhyb',
		'Ah.16g109370' => 'amhyb',
		'AL3G47720' => 'aly',
		'ATR0012G060' => 'atr',
		'ATR0026G029' => 'atr',
		'ATR0193G043' => 'atr',
		'ATR0561G076' => 'atr',
		'ATR0561G181' => 'atr',
		'ATR0568G014' => 'atr',
		'ATR0568G114' => 'atr',
		'ATR0620G039' => 'atr',
		'ATR0629G125' => 'atr',
		'ATR0661G583' => 'atr',
		'ATR0686G019' => 'atr',
		'ATR0693G232' => 'atr',
		'ATR0697G104' => 'atr',
		'ATR0789G146' => 'atr',
		'ATR0794G066' => 'atr',
		'ATR1127G127' => 'atr',
		'ATR1131G040' => 'atr',
		'ATR1134G004' => 'atr',
		'ATR1134G095' => 'atr',
		'ATR1152G110' => 'atr',
		'ATR1153G065' => 'atr',
		'Atru.chr3.2296' => 'acertr',
		'AUR62000692' => 'cqu',
		'AUR62001473' => 'cqu',
		'AUR62001812' => 'cqu',
		'AUR62002706' => 'cqu',
		'AUR62003904' => 'cqu',
		'AUR62003905' => 'cqu',
		'AUR62004840' => 'cqu',
		'AUR62005160' => 'cqu',
		'AUR62005604' => 'cqu',
		'AUR62005891' => 'cqu',
		'AUR62007290' => 'cqu',
		'AUR62007502' => 'cqu',
		'AUR62007923' => 'cqu',
		'AUR62009972' => 'cqu',
		'AUR62010488' => 'cqu',
		'AUR62010643' => 'cqu',
		'AUR62012637' => 'cqu',
		'AUR62013492' => 'cqu',
		'AUR62014239' => 'cqu',
		'AUR62014878' => 'cqu',
		'AUR62015857' => 'cqu',
		'AUR62016224' => 'cqu',
		'AUR62017430' => 'cqu',
		'AUR62017467' => 'cqu',
		'AUR62018234' => 'cqu',
		'AUR62019060' => 'cqu',
		'AUR62019607' => 'cqu',
		'AUR62019661' => 'cqu',
		'AUR62022775' => 'cqu',
		'AUR62023603' => 'cqu',
		'AUR62024563' => 'cqu',
		'AUR62026199' => 'cqu',
		'AUR62026905' => 'cqu',
		'AUR62028639' => 'cqu',
		'AUR62029168' => 'cqu',
		'AUR62029551' => 'cqu',
		'AUR62029860' => 'cqu',
		'AUR62030164' => 'cqu',
		'AUR62031208' => 'cqu',
		'AUR62031287' => 'cqu',
		'AUR62031817' => 'cqu',
		'AUR62032126' => 'cqu',
		'AUR62032358' => 'cqu',
		'AUR62032884' => 'cqu',
		'AUR62032892' => 'cqu',
		'AUR62033082' => 'cqu',
		'AUR62033100' => 'cqu',
		'AUR62033255' => 'cqu',
		'AUR62033698' => 'cqu',
		'AUR62033757' => 'cqu',
		'AUR62034760' => 'cqu',
		'AUR62034860' => 'cqu',
		'AUR62035179' => 'cqu',
		'AUR62035881' => 'cqu',
		'AUR62036824' => 'cqu',
		'AUR62036876' => 'cqu',
		'AUR62037319' => 'cqu',
		'AUR62037362' => 'cqu',
		'AUR62037541' => 'cqu',
		'AUR62037853' => 'cqu',
		'AUR62038299' => 'cqu',
		'AUR62038563' => 'cqu',
		'AUR62038564' => 'cqu',
		'AUR62038594' => 'cqu',
		'AUR62038792' => 'cqu',
		'AUR62038947' => 'cqu',
		'AUR62039030' => 'cqu',
		'AUR62039231' => 'cqu',
		'AUR62039452' => 'cqu',
		'AUR62040334' => 'cqu',
		'AUR62040869' => 'cqu',
		'AUR62040870' => 'cqu',
		'AUR62040916' => 'cqu',
		'AUR62041199' => 'cqu',
		'AUR62041334' => 'cqu',
		'AUR62041608' => 'cqu',
		'AUR62041609' => 'cqu',
		'AUR62041833' => 'cqu',
		'AUR62041834' => 'cqu',
		'AUR62042054' => 'cqu',
		'AUR62042134' => 'cqu',
		'AUR62042236' => 'cqu',
		'AUR62042281' => 'cqu',
		'AUR62042593' => 'cqu',
		'AUR62042653' => 'cqu',
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		'AUR62043026' => 'cqu',
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		'Sopen00g003950' => 'spe',
		'Sopen00g004130' => 'spe',
		'Sopen00g004810' => 'spe',
		'Sopen00g005120' => 'spe',
		'Sopen00g005190' => 'spe',
		'Sopen00g007000' => 'spe',
		'Sopen00g007210' => 'spe',
		'Sopen00g012840' => 'spe',
		'Sopen00g013060' => 'spe',
		'Sopen00g013610' => 'spe',
		'Sopen00g013630' => 'spe',
		'Sopen01g004610' => 'spe',
		'Sopen01g007660' => 'spe',
		'Sopen01g007750' => 'spe',
		'Sopen01g007760' => 'spe',
		'Sopen01g007770' => 'spe',
		'Sopen01g007860' => 'spe',
		'Sopen01g009130' => 'spe',
		'Sopen01g009820' => 'spe',
		'Sopen01g011240' => 'spe',
		'Sopen01g012740' => 'spe',
		'Sopen01g013840' => 'spe',
		'Sopen01g013850' => 'spe',
		'Sopen01g016140' => 'spe',
		'Sopen01g016150' => 'spe',
		'Sopen01g016830' => 'spe',
		'Sopen01g017260' => 'spe',
		'Sopen01g019000' => 'spe',
		'Sopen01g019690' => 'spe',
		'Sopen01g022160' => 'spe',
		'Sopen01g024000' => 'spe',
		'Sopen01g024670' => 'spe',
		'Sopen01g024770' => 'spe',
		'Sopen01g024900' => 'spe',
		'Sopen01g025130' => 'spe',
		'Sopen01g026370' => 'spe',
		'Sopen01g041640' => 'spe',
		'Sopen01g046930' => 'spe',
		'Sopen02g001360' => 'spe',
		'Sopen02g002010' => 'spe',
		'Sopen02g003600' => 'spe',
		'Sopen02g003730' => 'spe',
		'Sopen02g005430' => 'spe',
		'Sopen02g005510' => 'spe',
		'Sopen02g006840' => 'spe',
		'Sopen02g007390' => 'spe',
		'Sopen02g007420' => 'spe',
		'Sopen02g007540' => 'spe',
		'Sopen02g007920' => 'spe',
		'Sopen02g008960' => 'spe',
		'Sopen02g009450' => 'spe',
		'Sopen02g009460' => 'spe',
		'Sopen02g011320' => 'spe',
		'Sopen02g012680' => 'spe',
		'Sopen02g018090' => 'spe',
		'Sopen02g022140' => 'spe',
		'Sopen03g010330' => 'spe',
		'Sopen03g013130' => 'spe',
		'Sopen03g013180' => 'spe',
		'Sopen03g013230' => 'spe',
		'Sopen03g014110' => 'spe',
		'Sopen03g015260' => 'spe',
		'Sopen03g015790' => 'spe',
		'Sopen03g018360' => 'spe',
		'Sopen03g024470' => 'spe',
		'Sopen03g026800' => 'spe',
		'Sopen04g003180' => 'spe',
		'Sopen04g008260' => 'spe',
		'Sopen04g010320' => 'spe',
		'Sopen04g011020' => 'spe',
		'Sopen04g011200' => 'spe',
		'Sopen04g011280' => 'spe',
		'Sopen04g021910' => 'spe',
		'Sopen04g023870' => 'spe',
		'Sopen05g009880' => 'spe',
		'Sopen05g011580' => 'spe',
		'Sopen05g012230' => 'spe',
		'Sopen05g012500' => 'spe',
		'Sopen05g012560' => 'spe',
		'Sopen05g012570' => 'spe',
		'Sopen05g012760' => 'spe',
		'Sopen05g013710' => 'spe',
		'Sopen05g015050' => 'spe',
		'Sopen05g026090' => 'spe',
		'Sopen05g028020' => 'spe',
		'Sopen05g028610' => 'spe',
		'Sopen05g029300' => 'spe',
		'Sopen06g005520' => 'spe',
		'Sopen06g006750' => 'spe',
		'Sopen06g008160' => 'spe',
		'Sopen06g009120' => 'spe',
		'Sopen06g013550' => 'spe',
		'Sopen06g015340' => 'spe',
		'Sopen06g018330' => 'spe',
		'Sopen06g021630' => 'spe',
		'Sopen06g021650' => 'spe',
		'Sopen07g006730' => 'spe',
		'Sopen07g008690' => 'spe',
		'Sopen07g008700' => 'spe',
		'Sopen07g008720' => 'spe',
		'Sopen07g008870' => 'spe',
		'Sopen07g009400' => 'spe',
		'Sopen07g009410' => 'spe',
		'Sopen07g009470' => 'spe',
		'Sopen07g009540' => 'spe',
		'Sopen07g011060' => 'spe',
		'Sopen07g011110' => 'spe',
		'Sopen07g011820' => 'spe',
		'Sopen07g013260' => 'spe',
		'Sopen07g014740' => 'spe',
		'Sopen07g015160' => 'spe',
		'Sopen07g015230' => 'spe',
		'Sopen07g016240' => 'spe',
		'Sopen07g017200' => 'spe',
		'Sopen07g017810' => 'spe',
		'Sopen07g019030' => 'spe',
		'Sopen07g020430' => 'spe',
		'Sopen07g021010' => 'spe',
		'Sopen07g021340' => 'spe',
		'Sopen07g022950' => 'spe',
		'Sopen07g027860' => 'spe',
		'Sopen08g007820' => 'spe',
		'Sopen08g009330' => 'spe',
		'Sopen08g012310' => 'spe',
		'Sopen08g012560' => 'spe',
		'Sopen08g014040' => 'spe',
		'Sopen08g014650' => 'spe',
		'Sopen08g017020' => 'spe',
		'Sopen08g018300' => 'spe',
		'Sopen08g020530' => 'spe',
		'Sopen09g008590' => 'spe',
		'Sopen09g008780' => 'spe',
		'Sopen09g011540' => 'spe',
		'Sopen09g011920' => 'spe',
		'Sopen09g014170' => 'spe',
		'Sopen09g016520' => 'spe',
		'Sopen09g021030' => 'spe',
		'Sopen09g023110' => 'spe',
		'Sopen09g024750' => 'spe',
		'Sopen09g025230' => 'spe',
		'Sopen09g025600' => 'spe',
		'Sopen09g034660' => 'spe',
		'Sopen10g006700' => 'spe',
		'Sopen10g009130' => 'spe',
		'Sopen10g009140' => 'spe',
		'Sopen10g009560' => 'spe',
		'Sopen10g010340' => 'spe',
		'Sopen10g011040' => 'spe',
		'Sopen10g013650' => 'spe',
		'Sopen10g014130' => 'spe',
		'Sopen10g014140' => 'spe',
		'Sopen10g014760' => 'spe',
		'Sopen10g015080' => 'spe',
		'Sopen10g015830' => 'spe',
		'Sopen10g018240' => 'spe',
		'Sopen10g018300' => 'spe',
		'Sopen10g018350' => 'spe',
		'Sopen10g018460' => 'spe',
		'Sopen10g018670' => 'spe',
		'Sopen10g019040' => 'spe',
		'Sopen10g019330' => 'spe',
		'Sopen10g019340' => 'spe',
		'Sopen10g019360' => 'spe',
		'Sopen10g019370' => 'spe',
		'Sopen10g020620' => 'spe',
		'Sopen10g021550' => 'spe',
		'Sopen10g022160' => 'spe',
		'Sopen10g023540' => 'spe',
		'Sopen10g023570' => 'spe',
		'Sopen10g023580' => 'spe',
		'Sopen10g023600' => 'spe',
		'Sopen10g023620' => 'spe',
		'Sopen10g023650' => 'spe',
		'Sopen10g024800' => 'spe',
		'Sopen10g026170' => 'spe',
		'Sopen11g007790' => 'spe',
		'Sopen11g010170' => 'spe',
		'Sopen11g010580' => 'spe',
		'Sopen11g013420' => 'spe',
		'Sopen11g016330' => 'spe',
		'Sopen11g017010' => 'spe',
		'Sopen11g018110' => 'spe',
		'Sopen11g018960' => 'spe',
		'Sopen11g019000' => 'spe',
		'Sopen11g019970' => 'spe',
		'Sopen11g020340' => 'spe',
		'Sopen11g020970' => 'spe',
		'Sopen12g008510' => 'spe',
		'Sopen12g008910' => 'spe',
		'Sopen12g009010' => 'spe',
		'Sopen12g009120' => 'spe',
		'Sopen12g009340' => 'spe',
		'Sopen12g009580' => 'spe',
		'Sopen12g010190' => 'spe',
		'Sopen12g010320' => 'spe',
		'Sopen12g010370' => 'spe',
		'Sopen12g012140' => 'spe',
		'Sopen12g012700' => 'spe',
		'Sopen12g013490' => 'spe',
		'Sopen12g014290' => 'spe',
		'Sopen12g015060' => 'spe',
		'Sopen12g015610' => 'spe',
		'Sopen12g018380' => 'spe',
		'Sopen12g019150' => 'spe',
		'Sopen12g020560' => 'spe',
		'Sopen12g023320' => 'spe',
		'Sp3g24190' => 'spa',
		'Sp4g07270' => 'spa',
		'Sp4g07530' => 'spa',
		'Sp4g07670' => 'spa',
		'Sp6g09360' => 'spa',
		'Sp7g04180' => 'spa',
		'Sp7g04980' => 'spa',
		'Sp7g08200' => 'spa',
		'Sp7g09660' => 'spa',
		'SpUn0081_0010' => 'spa',
		'THA.LOC104803417' => 'tha',
		'THA.LOC104817059' => 'tha',
		'Thecc.01G188700' => 'tca',
		'Thecc.05G106700' => 'tca',
		'Thecc.06G068800' => 'tca',
		'Thecc.07G189100' => 'tca',
		'Thecc.09G172800' => 'tca',
		'Thhalv10023044m.g' => 'esa',
		'Thhalv10023881m.g' => 'esa',
		'Thhalv10024067m.g' => 'esa'
	),
	'gf_id' => 'HOM05D000691',
	'gf_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'gf_types_configuration' => array(
		'HOMFAM' => array(
			'order' => '1',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		),
		'ORTHOFAM' => array(
			'order' => '2',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		)
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'allow_async_use' => true,
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D000691'
	),
	'data_identifier' => 'HOM05D000691',
	'data_type' => 'gf_id'
)
$sidebar_info = array(
	'gf_id' => 'HOM05D000691',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '827',
	'num_species' => '39'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$gf_genes = array(
	'Ah.01g012340' => 'amhyb',
	'Ah.01g013530' => 'amhyb',
	'Ah.03g143080' => 'amhyb',
	'Ah.06g186750' => 'amhyb',
	'Ah.06g186800' => 'amhyb',
	'Ah.07g200050' => 'amhyb',
	'Ah.08g209110' => 'amhyb',
	'Ah.09g229600' => 'amhyb',
	'Ah.09g229610' => 'amhyb',
	'Ah.10g026490' => 'amhyb',
	'Ah.12g065350' => 'amhyb',
	'Ah.13g069310' => 'amhyb',
	'Ah.14g080130' => 'amhyb',
	'Ah.14g081130' => 'amhyb',
	'Ah.14g081140' => 'amhyb',
	'Ah.16g109160' => 'amhyb',
	'Ah.16g109170' => 'amhyb',
	'Ah.16g109370' => 'amhyb',
	'AL3G47720' => 'aly',
	'ATR0012G060' => 'atr',
	'ATR0026G029' => 'atr',
	'ATR0193G043' => 'atr',
	'ATR0561G076' => 'atr',
	'ATR0561G181' => 'atr',
	'ATR0568G014' => 'atr',
	'ATR0568G114' => 'atr',
	'ATR0620G039' => 'atr',
	'ATR0629G125' => 'atr',
	'ATR0661G583' => 'atr',
	'ATR0686G019' => 'atr',
	'ATR0693G232' => 'atr',
	'ATR0697G104' => 'atr',
	'ATR0789G146' => 'atr',
	'ATR0794G066' => 'atr',
	'ATR1127G127' => 'atr',
	'ATR1131G040' => 'atr',
	'ATR1134G004' => 'atr',
	'ATR1134G095' => 'atr',
	'ATR1152G110' => 'atr',
	'ATR1153G065' => 'atr',
	'Atru.chr3.2296' => 'acertr',
	'AUR62000692' => 'cqu',
	'AUR62001473' => 'cqu',
	'AUR62001812' => 'cqu',
	'AUR62002706' => 'cqu',
	'AUR62003904' => 'cqu',
	'AUR62003905' => 'cqu',
	'AUR62004840' => 'cqu',
	'AUR62005160' => 'cqu',
	'AUR62005604' => 'cqu',
	'AUR62005891' => 'cqu',
	'AUR62007290' => 'cqu',
	'AUR62007502' => 'cqu',
	'AUR62007923' => 'cqu',
	'AUR62009972' => 'cqu',
	'AUR62010488' => 'cqu',
	'AUR62010643' => 'cqu',
	'AUR62012637' => 'cqu',
	'AUR62013492' => 'cqu',
	'AUR62014239' => 'cqu',
	'AUR62014878' => 'cqu',
	'AUR62015857' => 'cqu',
	'AUR62016224' => 'cqu',
	'AUR62017430' => 'cqu',
	'AUR62017467' => 'cqu',
	'AUR62018234' => 'cqu',
	'AUR62019060' => 'cqu',
	'AUR62019607' => 'cqu',
	'AUR62019661' => 'cqu',
	'AUR62022775' => 'cqu',
	'AUR62023603' => 'cqu',
	'AUR62024563' => 'cqu',
	'AUR62026199' => 'cqu',
	'AUR62026905' => 'cqu',
	'AUR62028639' => 'cqu',
	'AUR62029168' => 'cqu',
	'AUR62029551' => 'cqu',
	'AUR62029860' => 'cqu',
	'AUR62030164' => 'cqu',
	'AUR62031208' => 'cqu',
	'AUR62031287' => 'cqu',
	'AUR62031817' => 'cqu',
	'AUR62032126' => 'cqu',
	'AUR62032358' => 'cqu',
	'AUR62032884' => 'cqu',
	'AUR62032892' => 'cqu',
	'AUR62033082' => 'cqu',
	'AUR62033100' => 'cqu',
	'AUR62033255' => 'cqu',
	'AUR62033698' => 'cqu',
	'AUR62033757' => 'cqu',
	'AUR62034760' => 'cqu',
	'AUR62034860' => 'cqu',
	'AUR62035179' => 'cqu',
	'AUR62035881' => 'cqu',
	'AUR62036824' => 'cqu',
	'AUR62036876' => 'cqu',
	'AUR62037319' => 'cqu',
	'AUR62037362' => 'cqu',
	'AUR62037541' => 'cqu',
	'AUR62037853' => 'cqu',
	'AUR62038299' => 'cqu',
	'AUR62038563' => 'cqu',
	'AUR62038564' => 'cqu',
	'AUR62038594' => 'cqu',
	'AUR62038792' => 'cqu',
	'AUR62038947' => 'cqu',
	'AUR62039030' => 'cqu',
	'AUR62039231' => 'cqu',
	'AUR62039452' => 'cqu',
	'AUR62040334' => 'cqu',
	'AUR62040869' => 'cqu',
	'AUR62040870' => 'cqu',
	'AUR62040916' => 'cqu',
	'AUR62041199' => 'cqu',
	'AUR62041334' => 'cqu',
	'AUR62041608' => 'cqu',
	'AUR62041609' => 'cqu',
	'AUR62041833' => 'cqu',
	'AUR62041834' => 'cqu',
	'AUR62042054' => 'cqu',
	'AUR62042134' => 'cqu',
	'AUR62042236' => 'cqu',
	'AUR62042281' => 'cqu',
	'AUR62042593' => 'cqu',
	'AUR62042653' => 'cqu',
	'AUR62043025' => 'cqu',
	'AUR62043026' => 'cqu',
	'AUR62043063' => 'cqu',
	'AUR62043091' => 'cqu',
	'AUR62043320' => 'cqu',
	'BolC5t32558H' => 'bol',
	'CAN.G1036.12' => 'can',
	'CAN.G1432.23' => 'can',
	'CAN.G159.19' => 'can',
	'CAN.G4114.1' => 'can',
	'CAN.G492.85' => 'can',
	'CAN.G500.95' => 'can',
	'CAN.G93.31' => 'can',
	'CiPaw.04G054900' => 'cil',
	'CiPaw.05G045400' => 'cil',
	'CiPaw.15G094100' => 'cil',
	'ClCG00G000700' => 'cla',
	'ClCG00G000780' => 'cla',
	'ClCG01G012280' => 'cla',
	'ClCG02G006140' => 'cla',
	'ClCG02G009810' => 'cla',
	'ClCG03G010170' => 'cla',
	'ClCG03G010260' => 'cla',
	'ClCG04G000770' => 'cla',
	'ClCG05G013980' => 'cla',
	'ClCG06G009110' => 'cla',
	'ClCG06G009120' => 'cla',
	'ClCG08G002190' => 'cla',
	'ClCG09G013830' => 'cla',
	'ClCG10G006760' => 'cla',
	'ClCG11G007310' => 'cla',
	'COL.COLO4_16141' => 'col',
	'Cpa.g.sc202.2' => 'cpa',
	'Cpa.g.sc76.18' => 'cpa',
	'CsaV3_1G031080' => 'csa',
	'CsaV3_4G011870' => 'csa',
	'CsaV3_4G014860' => 'csa',
	'CsaV3_4G021860' => 'csa',
	'CsaV3_6G009880' => 'csa',
	'CsaV3_7G021240' => 'csa',
	'CsaV3_UNG240600' => 'csa',
	'CSS0003516' => 'camsi',
	'CSS0013023' => 'camsi',
	'CSS0017680' => 'camsi',
	'CSS0018551' => 'camsi',
	'CSS0026792' => 'camsi',
	'CSS0028271' => 'camsi',
	'CSS0033603' => 'camsi',
	'CSS0040789' => 'camsi',
	'CSS0045068' => 'camsi',
	'CSS0045803' => 'camsi',
	'Dinv10528' => 'din',
	'Duzib116G0875' => 'dzi',
	'Duzib128G0055' => 'dzi',
	'EL10Ac1g02377' => 'bvu',
	'EL10Ac1g02378' => 'bvu',
	'EL10Ac2g03486' => 'bvu',
	'EL10Ac2g03487' => 'bvu',
	'EL10Ac3g05722' => 'bvu',
	'EL10Ac3g06186' => 'bvu',
	'EL10Ac5g11258' => 'bvu',
	'EL10Ac6g13831' => 'bvu',
	'EL10Ac6g14162' => 'bvu',
	'EL10Ac6g14316' => 'bvu',
	'EL10Ac6g14317' => 'bvu',
	'EL10Ac6g14588' => 'bvu',
	'EL10Ac7g16302' => 'bvu',
	'EL10Ac7g16543' => 'bvu',
	'EL10Ac8g18762' => 'bvu',
	'EL10Ac9g20847' => 'bvu',
	'EL10As7g23731' => 'bvu',
	'EL10As7g23732' => 'bvu',
	'FvH4_1g23713' => 'fve',
	'FvH4_2g00261' => 'fve',
	'FvH4_2g00262' => 'fve',
	'FvH4_2g15681' => 'fve',
	'FvH4_2g17851' => 'fve',
	'FvH4_3g10531' => 'fve',
	'FvH4_3g33536' => 'fve',
	'FvH4_4g03471' => 'fve',
	'FvH4_4g19351' => 'fve',
	'FvH4_4g34281' => 'fve',
	'FvH4_5g03811' => 'fve',
	'FvH4_5g03812' => 'fve',
	'FvH4_5g11822' => 'fve',
	'FvH4_5g31701' => 'fve',
	'FvH4_6g12161' => 'fve',
	'FvH4_6g15222' => 'fve',
	'FvH4_6g15223' => 'fve',
	'FvH4_6g19301' => 'fve',
	'FvH4_6g33011' => 'fve',
	'FvH4_6g50161' => 'fve',
	'FvH4_7g04123' => 'fve',
	'FvH4_c7g00010' => 'fve',
	'Gorai.012G165300' => 'gra',
	'HanXRQChr00c0452g0574871' => 'han',
	'HanXRQChr01g0029471' => 'han',
	'HanXRQChr05g0133501' => 'han',
	'HanXRQChr10g0280141' => 'han',
	'HanXRQChr10g0280631' => 'han',
	'HanXRQChr13g0409991' => 'han',
	'HanXRQChr15g0468361' => 'han',
	'Hma1.2p1_0021F.1_g014270' => 'hma',
	'Hma1.2p1_0026F.1_g016730' => 'hma',
	'Hma1.2p1_0177F.1_g077930' => 'hma',
	'Hma1.2p1_0370F.1_g137540' => 'hma',
	'Hma1.2p1_0637F.1_g193600' => 'hma',
	'Hma1.2p1_1045F.1_g251360' => 'hma',
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	'Sopen10g013650' => 'spe',
	'Sopen10g014130' => 'spe',
	'Sopen10g014140' => 'spe',
	'Sopen10g014760' => 'spe',
	'Sopen10g015080' => 'spe',
	'Sopen10g015830' => 'spe',
	'Sopen10g018240' => 'spe',
	'Sopen10g018300' => 'spe',
	'Sopen10g018350' => 'spe',
	'Sopen10g018460' => 'spe',
	'Sopen10g018670' => 'spe',
	'Sopen10g019040' => 'spe',
	'Sopen10g019330' => 'spe',
	'Sopen10g019340' => 'spe',
	'Sopen10g019360' => 'spe',
	'Sopen10g019370' => 'spe',
	'Sopen10g020620' => 'spe',
	'Sopen10g021550' => 'spe',
	'Sopen10g022160' => 'spe',
	'Sopen10g023540' => 'spe',
	'Sopen10g023570' => 'spe',
	'Sopen10g023580' => 'spe',
	'Sopen10g023600' => 'spe',
	'Sopen10g023620' => 'spe',
	'Sopen10g023650' => 'spe',
	'Sopen10g024800' => 'spe',
	'Sopen10g026170' => 'spe',
	'Sopen11g007790' => 'spe',
	'Sopen11g010170' => 'spe',
	'Sopen11g010580' => 'spe',
	'Sopen11g013420' => 'spe',
	'Sopen11g016330' => 'spe',
	'Sopen11g017010' => 'spe',
	'Sopen11g018110' => 'spe',
	'Sopen11g018960' => 'spe',
	'Sopen11g019000' => 'spe',
	'Sopen11g019970' => 'spe',
	'Sopen11g020340' => 'spe',
	'Sopen11g020970' => 'spe',
	'Sopen12g008510' => 'spe',
	'Sopen12g008910' => 'spe',
	'Sopen12g009010' => 'spe',
	'Sopen12g009120' => 'spe',
	'Sopen12g009340' => 'spe',
	'Sopen12g009580' => 'spe',
	'Sopen12g010190' => 'spe',
	'Sopen12g010320' => 'spe',
	'Sopen12g010370' => 'spe',
	'Sopen12g012140' => 'spe',
	'Sopen12g012700' => 'spe',
	'Sopen12g013490' => 'spe',
	'Sopen12g014290' => 'spe',
	'Sopen12g015060' => 'spe',
	'Sopen12g015610' => 'spe',
	'Sopen12g018380' => 'spe',
	'Sopen12g019150' => 'spe',
	'Sopen12g020560' => 'spe',
	'Sopen12g023320' => 'spe',
	'Sp3g24190' => 'spa',
	'Sp4g07270' => 'spa',
	'Sp4g07530' => 'spa',
	'Sp4g07670' => 'spa',
	'Sp6g09360' => 'spa',
	'Sp7g04180' => 'spa',
	'Sp7g04980' => 'spa',
	'Sp7g08200' => 'spa',
	'Sp7g09660' => 'spa',
	'SpUn0081_0010' => 'spa',
	'THA.LOC104803417' => 'tha',
	'THA.LOC104817059' => 'tha',
	'Thecc.01G188700' => 'tca',
	'Thecc.05G106700' => 'tca',
	'Thecc.06G068800' => 'tca',
	'Thecc.07G189100' => 'tca',
	'Thecc.09G172800' => 'tca',
	'Thhalv10023044m.g' => 'esa',
	'Thhalv10023881m.g' => 'esa',
	'Thhalv10024067m.g' => 'esa'
)
$gf_id = 'HOM05D000691'
$gf_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$gf_types_configuration = array(
	'HOMFAM' => array(
		'order' => '1',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	),
	'ORTHOFAM' => array(
		'order' => '2',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	)
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$allow_async_use = true
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D000691'
)
$data_identifier = 'HOM05D000691'
$data_type = 'gf_id'
$species_gene_counts = array(
	'amhyb' => (int) 18,
	'aly' => (int) 1,
	'atr' => (int) 21,
	'acertr' => (int) 1,
	'cqu' => (int) 90,
	'bol' => (int) 1,
	'can' => (int) 7,
	'cil' => (int) 3,
	'cla' => (int) 15,
	'col' => (int) 1,
	'cpa' => (int) 2,
	'csa' => (int) 7,
	'camsi' => (int) 10,
	'din' => (int) 1,
	'dzi' => (int) 2,
	'bvu' => (int) 18,
	'fve' => (int) 22,
	'gra' => (int) 1,
	'han' => (int) 7,
	'hma' => (int) 9,
	'sun' => (int) 16,
	'lonja' => (int) 46,
	'mes' => (int) 8,
	'mbi' => (int) 2,
	'cme' => (int) 6,
	'oeu' => (int) 110,
	'stu' => (int) 45,
	'ptr' => (int) 1,
	'rch' => (int) 1,
	'sci' => (int) 1,
	'sgi' => (int) 31,
	'sas' => (int) 1,
	'shi' => (int) 89,
	'sly' => (int) 2,
	'spe' => (int) 211,
	'spa' => (int) 10,
	'tha' => (int) 2,
	'tca' => (int) 5,
	'esa' => (int) 3
)
$gf_gene_species = 'esa'
$gf_gene_id = 'Thhalv10024067m.g'
$species_info = array(
	'species' => 'hma',
	'common_name' => 'Hydrangea macrophylla',
	'tax_id' => '23110',
	'version' => 'v2.1'
)
$local_species = 'hma'
$disabled = ''
$selected = ''
$num_hits = (int) 1
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Analysis/custom_tree_creation.ctp, line 27
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933

Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]
Code Context
        $disabled    = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";

        $selected    = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";

        $num_hits    = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D000691',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '827',
		'num_species' => '39'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'gf_genes' => array(
		'Ah.01g012340' => 'amhyb',
		'Ah.01g013530' => 'amhyb',
		'Ah.03g143080' => 'amhyb',
		'Ah.06g186750' => 'amhyb',
		'Ah.06g186800' => 'amhyb',
		'Ah.07g200050' => 'amhyb',
		'Ah.08g209110' => 'amhyb',
		'Ah.09g229600' => 'amhyb',
		'Ah.09g229610' => 'amhyb',
		'Ah.10g026490' => 'amhyb',
		'Ah.12g065350' => 'amhyb',
		'Ah.13g069310' => 'amhyb',
		'Ah.14g080130' => 'amhyb',
		'Ah.14g081130' => 'amhyb',
		'Ah.14g081140' => 'amhyb',
		'Ah.16g109160' => 'amhyb',
		'Ah.16g109170' => 'amhyb',
		'Ah.16g109370' => 'amhyb',
		'AL3G47720' => 'aly',
		'ATR0012G060' => 'atr',
		'ATR0026G029' => 'atr',
		'ATR0193G043' => 'atr',
		'ATR0561G076' => 'atr',
		'ATR0561G181' => 'atr',
		'ATR0568G014' => 'atr',
		'ATR0568G114' => 'atr',
		'ATR0620G039' => 'atr',
		'ATR0629G125' => 'atr',
		'ATR0661G583' => 'atr',
		'ATR0686G019' => 'atr',
		'ATR0693G232' => 'atr',
		'ATR0697G104' => 'atr',
		'ATR0789G146' => 'atr',
		'ATR0794G066' => 'atr',
		'ATR1127G127' => 'atr',
		'ATR1131G040' => 'atr',
		'ATR1134G004' => 'atr',
		'ATR1134G095' => 'atr',
		'ATR1152G110' => 'atr',
		'ATR1153G065' => 'atr',
		'Atru.chr3.2296' => 'acertr',
		'AUR62000692' => 'cqu',
		'AUR62001473' => 'cqu',
		'AUR62001812' => 'cqu',
		'AUR62002706' => 'cqu',
		'AUR62003904' => 'cqu',
		'AUR62003905' => 'cqu',
		'AUR62004840' => 'cqu',
		'AUR62005160' => 'cqu',
		'AUR62005604' => 'cqu',
		'AUR62005891' => 'cqu',
		'AUR62007290' => 'cqu',
		'AUR62007502' => 'cqu',
		'AUR62007923' => 'cqu',
		'AUR62009972' => 'cqu',
		'AUR62010488' => 'cqu',
		'AUR62010643' => 'cqu',
		'AUR62012637' => 'cqu',
		'AUR62013492' => 'cqu',
		'AUR62014239' => 'cqu',
		'AUR62014878' => 'cqu',
		'AUR62015857' => 'cqu',
		'AUR62016224' => 'cqu',
		'AUR62017430' => 'cqu',
		'AUR62017467' => 'cqu',
		'AUR62018234' => 'cqu',
		'AUR62019060' => 'cqu',
		'AUR62019607' => 'cqu',
		'AUR62019661' => 'cqu',
		'AUR62022775' => 'cqu',
		'AUR62023603' => 'cqu',
		'AUR62024563' => 'cqu',
		'AUR62026199' => 'cqu',
		'AUR62026905' => 'cqu',
		'AUR62028639' => 'cqu',
		'AUR62029168' => 'cqu',
		'AUR62029551' => 'cqu',
		'AUR62029860' => 'cqu',
		'AUR62030164' => 'cqu',
		'AUR62031208' => 'cqu',
		'AUR62031287' => 'cqu',
		'AUR62031817' => 'cqu',
		'AUR62032126' => 'cqu',
		'AUR62032358' => 'cqu',
		'AUR62032884' => 'cqu',
		'AUR62032892' => 'cqu',
		'AUR62033082' => 'cqu',
		'AUR62033100' => 'cqu',
		'AUR62033255' => 'cqu',
		'AUR62033698' => 'cqu',
		'AUR62033757' => 'cqu',
		'AUR62034760' => 'cqu',
		'AUR62034860' => 'cqu',
		'AUR62035179' => 'cqu',
		'AUR62035881' => 'cqu',
		'AUR62036824' => 'cqu',
		'AUR62036876' => 'cqu',
		'AUR62037319' => 'cqu',
		'AUR62037362' => 'cqu',
		'AUR62037541' => 'cqu',
		'AUR62037853' => 'cqu',
		'AUR62038299' => 'cqu',
		'AUR62038563' => 'cqu',
		'AUR62038564' => 'cqu',
		'AUR62038594' => 'cqu',
		'AUR62038792' => 'cqu',
		'AUR62038947' => 'cqu',
		'AUR62039030' => 'cqu',
		'AUR62039231' => 'cqu',
		'AUR62039452' => 'cqu',
		'AUR62040334' => 'cqu',
		'AUR62040869' => 'cqu',
		'AUR62040870' => 'cqu',
		'AUR62040916' => 'cqu',
		'AUR62041199' => 'cqu',
		'AUR62041334' => 'cqu',
		'AUR62041608' => 'cqu',
		'AUR62041609' => 'cqu',
		'AUR62041833' => 'cqu',
		'AUR62041834' => 'cqu',
		'AUR62042054' => 'cqu',
		'AUR62042134' => 'cqu',
		'AUR62042236' => 'cqu',
		'AUR62042281' => 'cqu',
		'AUR62042593' => 'cqu',
		'AUR62042653' => 'cqu',
		'AUR62043025' => 'cqu',
		'AUR62043026' => 'cqu',
		'AUR62043063' => 'cqu',
		'AUR62043091' => 'cqu',
		'AUR62043320' => 'cqu',
		'BolC5t32558H' => 'bol',
		'CAN.G1036.12' => 'can',
		'CAN.G1432.23' => 'can',
		'CAN.G159.19' => 'can',
		'CAN.G4114.1' => 'can',
		'CAN.G492.85' => 'can',
		'CAN.G500.95' => 'can',
		'CAN.G93.31' => 'can',
		'CiPaw.04G054900' => 'cil',
		'CiPaw.05G045400' => 'cil',
		'CiPaw.15G094100' => 'cil',
		'ClCG00G000700' => 'cla',
		'ClCG00G000780' => 'cla',
		'ClCG01G012280' => 'cla',
		'ClCG02G006140' => 'cla',
		'ClCG02G009810' => 'cla',
		'ClCG03G010170' => 'cla',
		'ClCG03G010260' => 'cla',
		'ClCG04G000770' => 'cla',
		'ClCG05G013980' => 'cla',
		'ClCG06G009110' => 'cla',
		'ClCG06G009120' => 'cla',
		'ClCG08G002190' => 'cla',
		'ClCG09G013830' => 'cla',
		'ClCG10G006760' => 'cla',
		'ClCG11G007310' => 'cla',
		'COL.COLO4_16141' => 'col',
		'Cpa.g.sc202.2' => 'cpa',
		'Cpa.g.sc76.18' => 'cpa',
		'CsaV3_1G031080' => 'csa',
		'CsaV3_4G011870' => 'csa',
		'CsaV3_4G014860' => 'csa',
		'CsaV3_4G021860' => 'csa',
		'CsaV3_6G009880' => 'csa',
		'CsaV3_7G021240' => 'csa',
		'CsaV3_UNG240600' => 'csa',
		'CSS0003516' => 'camsi',
		'CSS0013023' => 'camsi',
		'CSS0017680' => 'camsi',
		'CSS0018551' => 'camsi',
		'CSS0026792' => 'camsi',
		'CSS0028271' => 'camsi',
		'CSS0033603' => 'camsi',
		'CSS0040789' => 'camsi',
		'CSS0045068' => 'camsi',
		'CSS0045803' => 'camsi',
		'Dinv10528' => 'din',
		'Duzib116G0875' => 'dzi',
		'Duzib128G0055' => 'dzi',
		'EL10Ac1g02377' => 'bvu',
		'EL10Ac1g02378' => 'bvu',
		'EL10Ac2g03486' => 'bvu',
		'EL10Ac2g03487' => 'bvu',
		'EL10Ac3g05722' => 'bvu',
		'EL10Ac3g06186' => 'bvu',
		'EL10Ac5g11258' => 'bvu',
		'EL10Ac6g13831' => 'bvu',
		'EL10Ac6g14162' => 'bvu',
		'EL10Ac6g14316' => 'bvu',
		'EL10Ac6g14317' => 'bvu',
		'EL10Ac6g14588' => 'bvu',
		'EL10Ac7g16302' => 'bvu',
		'EL10Ac7g16543' => 'bvu',
		'EL10Ac8g18762' => 'bvu',
		'EL10Ac9g20847' => 'bvu',
		'EL10As7g23731' => 'bvu',
		'EL10As7g23732' => 'bvu',
		'FvH4_1g23713' => 'fve',
		'FvH4_2g00261' => 'fve',
		'FvH4_2g00262' => 'fve',
		'FvH4_2g15681' => 'fve',
		'FvH4_2g17851' => 'fve',
		'FvH4_3g10531' => 'fve',
		'FvH4_3g33536' => 'fve',
		'FvH4_4g03471' => 'fve',
		'FvH4_4g19351' => 'fve',
		'FvH4_4g34281' => 'fve',
		'FvH4_5g03811' => 'fve',
		'FvH4_5g03812' => 'fve',
		'FvH4_5g11822' => 'fve',
		'FvH4_5g31701' => 'fve',
		'FvH4_6g12161' => 'fve',
		'FvH4_6g15222' => 'fve',
		'FvH4_6g15223' => 'fve',
		'FvH4_6g19301' => 'fve',
		'FvH4_6g33011' => 'fve',
		'FvH4_6g50161' => 'fve',
		'FvH4_7g04123' => 'fve',
		'FvH4_c7g00010' => 'fve',
		'Gorai.012G165300' => 'gra',
		'HanXRQChr00c0452g0574871' => 'han',
		'HanXRQChr01g0029471' => 'han',
		'HanXRQChr05g0133501' => 'han',
		'HanXRQChr10g0280141' => 'han',
		'HanXRQChr10g0280631' => 'han',
		'HanXRQChr13g0409991' => 'han',
		'HanXRQChr15g0468361' => 'han',
		'Hma1.2p1_0021F.1_g014270' => 'hma',
		'Hma1.2p1_0026F.1_g016730' => 'hma',
		'Hma1.2p1_0177F.1_g077930' => 'hma',
		'Hma1.2p1_0370F.1_g137540' => 'hma',
		'Hma1.2p1_0637F.1_g193600' => 'hma',
		'Hma1.2p1_1045F.1_g251360' => 'hma',
		'Hma1.2p1_1168F.1_g263120' => 'hma',
		'Hma1.2p1_1640F.1_g295040' => 'hma',
		'Hma1.2p1_2467F.1_g322660' => 'hma',
		'Hund01785' => 'sun',
		'Hund04739' => 'sun',
		'Hund07717' => 'sun',
		'Hund08060' => 'sun',
		'Hund08734' => 'sun',
		'Hund10876' => 'sun',
		'Hund14991' => 'sun',
		'Hund15051' => 'sun',
		'Hund15082' => 'sun',
		'Hund17998' => 'sun',
		'Hund18526' => 'sun',
		'Hund19828' => 'sun',
		'Hund23384' => 'sun',
		'Hund26399' => 'sun',
		'Hund28766' => 'sun',
		'Hund28768' => 'sun',
		'Lj1A487G33' => 'lonja',
		'Lj1A487G34' => 'lonja',
		'Lj1A489G15' => 'lonja',
		'Lj1C1113T3' => 'lonja',
		'Lj1C3T4' => 'lonja',
		'Lj1C763G4' => 'lonja',
		'Lj1P195T27' => 'lonja',
		'Lj1P573T13' => 'lonja',
		'Lj1P895T45' => 'lonja',
		'Lj1P995G28' => 'lonja',
		'Lj2A1125G46' => 'lonja',
		'Lj2C116T7' => 'lonja',
		'Lj2P295T30' => 'lonja',
		'Lj2P476T23' => 'lonja',
		'Lj2P603T27' => 'lonja',
		'Lj2P609T17' => 'lonja',
		'Lj2P727T24' => 'lonja',
		'Lj3C273T2' => 'lonja',
		'Lj3C644G3' => 'lonja',
		'Lj3C644G4' => 'lonja',
		'Lj3P463T4' => 'lonja',
		'Lj3P545T31' => 'lonja',
		'Lj3P820T55' => 'lonja',
		'Lj4C260T12' => 'lonja',
		'Lj4C714G8' => 'lonja',
		'Lj4P131T14' => 'lonja',
		'Lj4P131T15' => 'lonja',
		'Lj5C102G24' => 'lonja',
		'Lj5P491T3' => 'lonja',
		'Lj5P564T12' => 'lonja',
		'Lj5P786T11' => 'lonja',
		'Lj6C97T3' => 'lonja',
		'Lj8P523T19' => 'lonja',
		'Lj9A24G30' => 'lonja',
		'Lj9A424G33' => 'lonja',
		'Lj9C219G10' => 'lonja',
		'Lj9P219T12' => 'lonja',
		'Lj9P705T22' => 'lonja',
		'Lju114C4T7' => 'lonja',
		'Lju1220C5G5' => 'lonja',
		'Lju2092C1G1' => 'lonja',
		'Lju2092C1T0' => 'lonja',
		'Lju225C6G6' => 'lonja',
		'Lju427C2T0' => 'lonja',
		'Lju50C9T4' => 'lonja',
		'Lju926C12T2' => 'lonja',
		'Manes.06G126602' => 'mes',
		'Manes.13G002614' => 'mes',
		'Manes.15G192966' => 'mes',
		'Manes.17G001483' => 'mes',
		'Manes.17G022547' => 'mes',
		'Manes.18G042825' => 'mes',
		'Manes.S026816' => 'mes',
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		'Sopen12g009580' => 'spe',
		'Sopen12g010190' => 'spe',
		'Sopen12g010320' => 'spe',
		'Sopen12g010370' => 'spe',
		'Sopen12g012140' => 'spe',
		'Sopen12g012700' => 'spe',
		'Sopen12g013490' => 'spe',
		'Sopen12g014290' => 'spe',
		'Sopen12g015060' => 'spe',
		'Sopen12g015610' => 'spe',
		'Sopen12g018380' => 'spe',
		'Sopen12g019150' => 'spe',
		'Sopen12g020560' => 'spe',
		'Sopen12g023320' => 'spe',
		'Sp3g24190' => 'spa',
		'Sp4g07270' => 'spa',
		'Sp4g07530' => 'spa',
		'Sp4g07670' => 'spa',
		'Sp6g09360' => 'spa',
		'Sp7g04180' => 'spa',
		'Sp7g04980' => 'spa',
		'Sp7g08200' => 'spa',
		'Sp7g09660' => 'spa',
		'SpUn0081_0010' => 'spa',
		'THA.LOC104803417' => 'tha',
		'THA.LOC104817059' => 'tha',
		'Thecc.01G188700' => 'tca',
		'Thecc.05G106700' => 'tca',
		'Thecc.06G068800' => 'tca',
		'Thecc.07G189100' => 'tca',
		'Thecc.09G172800' => 'tca',
		'Thhalv10023044m.g' => 'esa',
		'Thhalv10023881m.g' => 'esa',
		'Thhalv10024067m.g' => 'esa'
	),
	'gf_id' => 'HOM05D000691',
	'gf_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'gf_types_configuration' => array(
		'HOMFAM' => array(
			'order' => '1',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		),
		'ORTHOFAM' => array(
			'order' => '2',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		)
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'allow_async_use' => true,
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D000691'
	),
	'data_identifier' => 'HOM05D000691',
	'data_type' => 'gf_id'
)
$sidebar_info = array(
	'gf_id' => 'HOM05D000691',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '827',
	'num_species' => '39'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$gf_genes = array(
	'Ah.01g012340' => 'amhyb',
	'Ah.01g013530' => 'amhyb',
	'Ah.03g143080' => 'amhyb',
	'Ah.06g186750' => 'amhyb',
	'Ah.06g186800' => 'amhyb',
	'Ah.07g200050' => 'amhyb',
	'Ah.08g209110' => 'amhyb',
	'Ah.09g229600' => 'amhyb',
	'Ah.09g229610' => 'amhyb',
	'Ah.10g026490' => 'amhyb',
	'Ah.12g065350' => 'amhyb',
	'Ah.13g069310' => 'amhyb',
	'Ah.14g080130' => 'amhyb',
	'Ah.14g081130' => 'amhyb',
	'Ah.14g081140' => 'amhyb',
	'Ah.16g109160' => 'amhyb',
	'Ah.16g109170' => 'amhyb',
	'Ah.16g109370' => 'amhyb',
	'AL3G47720' => 'aly',
	'ATR0012G060' => 'atr',
	'ATR0026G029' => 'atr',
	'ATR0193G043' => 'atr',
	'ATR0561G076' => 'atr',
	'ATR0561G181' => 'atr',
	'ATR0568G014' => 'atr',
	'ATR0568G114' => 'atr',
	'ATR0620G039' => 'atr',
	'ATR0629G125' => 'atr',
	'ATR0661G583' => 'atr',
	'ATR0686G019' => 'atr',
	'ATR0693G232' => 'atr',
	'ATR0697G104' => 'atr',
	'ATR0789G146' => 'atr',
	'ATR0794G066' => 'atr',
	'ATR1127G127' => 'atr',
	'ATR1131G040' => 'atr',
	'ATR1134G004' => 'atr',
	'ATR1134G095' => 'atr',
	'ATR1152G110' => 'atr',
	'ATR1153G065' => 'atr',
	'Atru.chr3.2296' => 'acertr',
	'AUR62000692' => 'cqu',
	'AUR62001473' => 'cqu',
	'AUR62001812' => 'cqu',
	'AUR62002706' => 'cqu',
	'AUR62003904' => 'cqu',
	'AUR62003905' => 'cqu',
	'AUR62004840' => 'cqu',
	'AUR62005160' => 'cqu',
	'AUR62005604' => 'cqu',
	'AUR62005891' => 'cqu',
	'AUR62007290' => 'cqu',
	'AUR62007502' => 'cqu',
	'AUR62007923' => 'cqu',
	'AUR62009972' => 'cqu',
	'AUR62010488' => 'cqu',
	'AUR62010643' => 'cqu',
	'AUR62012637' => 'cqu',
	'AUR62013492' => 'cqu',
	'AUR62014239' => 'cqu',
	'AUR62014878' => 'cqu',
	'AUR62015857' => 'cqu',
	'AUR62016224' => 'cqu',
	'AUR62017430' => 'cqu',
	'AUR62017467' => 'cqu',
	'AUR62018234' => 'cqu',
	'AUR62019060' => 'cqu',
	'AUR62019607' => 'cqu',
	'AUR62019661' => 'cqu',
	'AUR62022775' => 'cqu',
	'AUR62023603' => 'cqu',
	'AUR62024563' => 'cqu',
	'AUR62026199' => 'cqu',
	'AUR62026905' => 'cqu',
	'AUR62028639' => 'cqu',
	'AUR62029168' => 'cqu',
	'AUR62029551' => 'cqu',
	'AUR62029860' => 'cqu',
	'AUR62030164' => 'cqu',
	'AUR62031208' => 'cqu',
	'AUR62031287' => 'cqu',
	'AUR62031817' => 'cqu',
	'AUR62032126' => 'cqu',
	'AUR62032358' => 'cqu',
	'AUR62032884' => 'cqu',
	'AUR62032892' => 'cqu',
	'AUR62033082' => 'cqu',
	'AUR62033100' => 'cqu',
	'AUR62033255' => 'cqu',
	'AUR62033698' => 'cqu',
	'AUR62033757' => 'cqu',
	'AUR62034760' => 'cqu',
	'AUR62034860' => 'cqu',
	'AUR62035179' => 'cqu',
	'AUR62035881' => 'cqu',
	'AUR62036824' => 'cqu',
	'AUR62036876' => 'cqu',
	'AUR62037319' => 'cqu',
	'AUR62037362' => 'cqu',
	'AUR62037541' => 'cqu',
	'AUR62037853' => 'cqu',
	'AUR62038299' => 'cqu',
	'AUR62038563' => 'cqu',
	'AUR62038564' => 'cqu',
	'AUR62038594' => 'cqu',
	'AUR62038792' => 'cqu',
	'AUR62038947' => 'cqu',
	'AUR62039030' => 'cqu',
	'AUR62039231' => 'cqu',
	'AUR62039452' => 'cqu',
	'AUR62040334' => 'cqu',
	'AUR62040869' => 'cqu',
	'AUR62040870' => 'cqu',
	'AUR62040916' => 'cqu',
	'AUR62041199' => 'cqu',
	'AUR62041334' => 'cqu',
	'AUR62041608' => 'cqu',
	'AUR62041609' => 'cqu',
	'AUR62041833' => 'cqu',
	'AUR62041834' => 'cqu',
	'AUR62042054' => 'cqu',
	'AUR62042134' => 'cqu',
	'AUR62042236' => 'cqu',
	'AUR62042281' => 'cqu',
	'AUR62042593' => 'cqu',
	'AUR62042653' => 'cqu',
	'AUR62043025' => 'cqu',
	'AUR62043026' => 'cqu',
	'AUR62043063' => 'cqu',
	'AUR62043091' => 'cqu',
	'AUR62043320' => 'cqu',
	'BolC5t32558H' => 'bol',
	'CAN.G1036.12' => 'can',
	'CAN.G1432.23' => 'can',
	'CAN.G159.19' => 'can',
	'CAN.G4114.1' => 'can',
	'CAN.G492.85' => 'can',
	'CAN.G500.95' => 'can',
	'CAN.G93.31' => 'can',
	'CiPaw.04G054900' => 'cil',
	'CiPaw.05G045400' => 'cil',
	'CiPaw.15G094100' => 'cil',
	'ClCG00G000700' => 'cla',
	'ClCG00G000780' => 'cla',
	'ClCG01G012280' => 'cla',
	'ClCG02G006140' => 'cla',
	'ClCG02G009810' => 'cla',
	'ClCG03G010170' => 'cla',
	'ClCG03G010260' => 'cla',
	'ClCG04G000770' => 'cla',
	'ClCG05G013980' => 'cla',
	'ClCG06G009110' => 'cla',
	'ClCG06G009120' => 'cla',
	'ClCG08G002190' => 'cla',
	'ClCG09G013830' => 'cla',
	'ClCG10G006760' => 'cla',
	'ClCG11G007310' => 'cla',
	'COL.COLO4_16141' => 'col',
	'Cpa.g.sc202.2' => 'cpa',
	'Cpa.g.sc76.18' => 'cpa',
	'CsaV3_1G031080' => 'csa',
	'CsaV3_4G011870' => 'csa',
	'CsaV3_4G014860' => 'csa',
	'CsaV3_4G021860' => 'csa',
	'CsaV3_6G009880' => 'csa',
	'CsaV3_7G021240' => 'csa',
	'CsaV3_UNG240600' => 'csa',
	'CSS0003516' => 'camsi',
	'CSS0013023' => 'camsi',
	'CSS0017680' => 'camsi',
	'CSS0018551' => 'camsi',
	'CSS0026792' => 'camsi',
	'CSS0028271' => 'camsi',
	'CSS0033603' => 'camsi',
	'CSS0040789' => 'camsi',
	'CSS0045068' => 'camsi',
	'CSS0045803' => 'camsi',
	'Dinv10528' => 'din',
	'Duzib116G0875' => 'dzi',
	'Duzib128G0055' => 'dzi',
	'EL10Ac1g02377' => 'bvu',
	'EL10Ac1g02378' => 'bvu',
	'EL10Ac2g03486' => 'bvu',
	'EL10Ac2g03487' => 'bvu',
	'EL10Ac3g05722' => 'bvu',
	'EL10Ac3g06186' => 'bvu',
	'EL10Ac5g11258' => 'bvu',
	'EL10Ac6g13831' => 'bvu',
	'EL10Ac6g14162' => 'bvu',
	'EL10Ac6g14316' => 'bvu',
	'EL10Ac6g14317' => 'bvu',
	'EL10Ac6g14588' => 'bvu',
	'EL10Ac7g16302' => 'bvu',
	'EL10Ac7g16543' => 'bvu',
	'EL10Ac8g18762' => 'bvu',
	'EL10Ac9g20847' => 'bvu',
	'EL10As7g23731' => 'bvu',
	'EL10As7g23732' => 'bvu',
	'FvH4_1g23713' => 'fve',
	'FvH4_2g00261' => 'fve',
	'FvH4_2g00262' => 'fve',
	'FvH4_2g15681' => 'fve',
	'FvH4_2g17851' => 'fve',
	'FvH4_3g10531' => 'fve',
	'FvH4_3g33536' => 'fve',
	'FvH4_4g03471' => 'fve',
	'FvH4_4g19351' => 'fve',
	'FvH4_4g34281' => 'fve',
	'FvH4_5g03811' => 'fve',
	'FvH4_5g03812' => 'fve',
	'FvH4_5g11822' => 'fve',
	'FvH4_5g31701' => 'fve',
	'FvH4_6g12161' => 'fve',
	'FvH4_6g15222' => 'fve',
	'FvH4_6g15223' => 'fve',
	'FvH4_6g19301' => 'fve',
	'FvH4_6g33011' => 'fve',
	'FvH4_6g50161' => 'fve',
	'FvH4_7g04123' => 'fve',
	'FvH4_c7g00010' => 'fve',
	'Gorai.012G165300' => 'gra',
	'HanXRQChr00c0452g0574871' => 'han',
	'HanXRQChr01g0029471' => 'han',
	'HanXRQChr05g0133501' => 'han',
	'HanXRQChr10g0280141' => 'han',
	'HanXRQChr10g0280631' => 'han',
	'HanXRQChr13g0409991' => 'han',
	'HanXRQChr15g0468361' => 'han',
	'Hma1.2p1_0021F.1_g014270' => 'hma',
	'Hma1.2p1_0026F.1_g016730' => 'hma',
	'Hma1.2p1_0177F.1_g077930' => 'hma',
	'Hma1.2p1_0370F.1_g137540' => 'hma',
	'Hma1.2p1_0637F.1_g193600' => 'hma',
	'Hma1.2p1_1045F.1_g251360' => 'hma',
	'Hma1.2p1_1168F.1_g263120' => 'hma',
	'Hma1.2p1_1640F.1_g295040' => 'hma',
	'Hma1.2p1_2467F.1_g322660' => 'hma',
	'Hund01785' => 'sun',
	'Hund04739' => 'sun',
	'Hund07717' => 'sun',
	'Hund08060' => 'sun',
	'Hund08734' => 'sun',
	'Hund10876' => 'sun',
	'Hund14991' => 'sun',
	'Hund15051' => 'sun',
	'Hund15082' => 'sun',
	'Hund17998' => 'sun',
	'Hund18526' => 'sun',
	'Hund19828' => 'sun',
	'Hund23384' => 'sun',
	'Hund26399' => 'sun',
	'Hund28766' => 'sun',
	'Hund28768' => 'sun',
	'Lj1A487G33' => 'lonja',
	'Lj1A487G34' => 'lonja',
	'Lj1A489G15' => 'lonja',
	'Lj1C1113T3' => 'lonja',
	'Lj1C3T4' => 'lonja',
	'Lj1C763G4' => 'lonja',
	'Lj1P195T27' => 'lonja',
	'Lj1P573T13' => 'lonja',
	'Lj1P895T45' => 'lonja',
	'Lj1P995G28' => 'lonja',
	'Lj2A1125G46' => 'lonja',
	'Lj2C116T7' => 'lonja',
	'Lj2P295T30' => 'lonja',
	'Lj2P476T23' => 'lonja',
	'Lj2P603T27' => 'lonja',
	'Lj2P609T17' => 'lonja',
	'Lj2P727T24' => 'lonja',
	'Lj3C273T2' => 'lonja',
	'Lj3C644G3' => 'lonja',
	'Lj3C644G4' => 'lonja',
	'Lj3P463T4' => 'lonja',
	'Lj3P545T31' => 'lonja',
	'Lj3P820T55' => 'lonja',
	'Lj4C260T12' => 'lonja',
	'Lj4C714G8' => 'lonja',
	'Lj4P131T14' => 'lonja',
	'Lj4P131T15' => 'lonja',
	'Lj5C102G24' => 'lonja',
	'Lj5P491T3' => 'lonja',
	'Lj5P564T12' => 'lonja',
	'Lj5P786T11' => 'lonja',
	'Lj6C97T3' => 'lonja',
	'Lj8P523T19' => 'lonja',
	'Lj9A24G30' => 'lonja',
	'Lj9A424G33' => 'lonja',
	'Lj9C219G10' => 'lonja',
	'Lj9P219T12' => 'lonja',
	'Lj9P705T22' => 'lonja',
	'Lju114C4T7' => 'lonja',
	'Lju1220C5G5' => 'lonja',
	'Lju2092C1G1' => 'lonja',
	'Lju2092C1T0' => 'lonja',
	'Lju225C6G6' => 'lonja',
	'Lju427C2T0' => 'lonja',
	'Lju50C9T4' => 'lonja',
	'Lju926C12T2' => 'lonja',
	'Manes.06G126602' => 'mes',
	'Manes.13G002614' => 'mes',
	'Manes.15G192966' => 'mes',
	'Manes.17G001483' => 'mes',
	'Manes.17G022547' => 'mes',
	'Manes.18G042825' => 'mes',
	'Manes.S026816' => 'mes',
	'Manes.S027416' => 'mes',
	'MBI02_g15234_MAGBIO' => 'mbi',
	'MBI16_g35584_MAGBIO' => 'mbi',
	'MELO3C008948.2' => 'cme',
	'MELO3C010395.2' => 'cme',
	'MELO3C010396.2' => 'cme',
	'MELO3C015759.2' => 'cme',
	'MELO3C022607.2' => 'cme',
	'MELO3C028897.2' => 'cme',
	'Oeu000188.1' => 'oeu',
	'Oeu002226.1' => 'oeu',
	'Oeu003087.1' => 'oeu',
	'Oeu003392.1' => 'oeu',
	'Oeu003523.1' => 'oeu',
	'Oeu003524.1' => 'oeu',
	'Oeu003528.1' => 'oeu',
	'Oeu003547.2' => 'oeu',
	'Oeu004677.1' => 'oeu',
	'Oeu005362.1' => 'oeu',
	'Oeu005833.1' => 'oeu',
	'Oeu005834.1' => 'oeu',
	'Oeu006751.1' => 'oeu',
	'Oeu007084.1' => 'oeu',
	'Oeu007264.1' => 'oeu',
	'Oeu008153.1' => 'oeu',
	'Oeu008228.1' => 'oeu',
	'Oeu008229.1' => 'oeu',
	'Oeu009580.1' => 'oeu',
	'Oeu010110.1' => 'oeu',
	'Oeu011704.1' => 'oeu',
	'Oeu011912.1' => 'oeu',
	'Oeu012057.1' => 'oeu',
	'Oeu012157.1' => 'oeu',
	'Oeu013775.1' => 'oeu',
	'Oeu013806.1' => 'oeu',
	'Oeu016457.1' => 'oeu',
	'Oeu016803.1' => 'oeu',
	'Oeu017243.2' => 'oeu',
	'Oeu017935.1' => 'oeu',
	'Oeu020246.2' => 'oeu',
	'Oeu020990.1' => 'oeu',
	'Oeu021941.1' => 'oeu',
	'Oeu021986.1' => 'oeu',
	'Oeu023578.1' => 'oeu',
	'Oeu024242.1' => 'oeu',
	'Oeu025087.1' => 'oeu',
	'Oeu025093.1' => 'oeu',
	'Oeu025412.1' => 'oeu',
	'Oeu025520.1' => 'oeu',
	'Oeu026473.1' => 'oeu',
	'Oeu027505.1' => 'oeu',
	'Oeu027530.1' => 'oeu',
	'Oeu027794.2' => 'oeu',
	'Oeu028951.1' => 'oeu',
	'Oeu029141.1' => 'oeu',
	'Oeu029231.4' => 'oeu',
	'Oeu029388.1' => 'oeu',
	'Oeu029673.1' => 'oeu',
	'Oeu029674.1' => 'oeu',
	'Oeu029748.1' => 'oeu',
	'Oeu030224.1' => 'oeu',
	'Oeu030243.1' => 'oeu',
	'Oeu030253.1' => 'oeu',
	'Oeu030414.1' => 'oeu',
	'Oeu030415.1' => 'oeu',
	'Oeu030472.1' => 'oeu',
	'Oeu031432.1' => 'oeu',
	'Oeu031697.1' => 'oeu',
	'Oeu032030.1' => 'oeu',
	'Oeu032031.1' => 'oeu',
	'Oeu032075.1' => 'oeu',
	'Oeu032737.1' => 'oeu',
	'Oeu033407.1' => 'oeu',
	'Oeu033485.1' => 'oeu',
	'Oeu034465.1' => 'oeu',
	'Oeu034951.1' => 'oeu',
	'Oeu036281.1' => 'oeu',
	'Oeu036931.1' => 'oeu',
	'Oeu036932.1' => 'oeu',
	'Oeu037340.1' => 'oeu',
	'Oeu037611.1' => 'oeu',
	'Oeu039205.1' => 'oeu',
	'Oeu039325.1' => 'oeu',
	'Oeu040999.1' => 'oeu',
	'Oeu041244.1' => 'oeu',
	'Oeu041682.1' => 'oeu',
	'Oeu041863.1' => 'oeu',
	'Oeu042345.1' => 'oeu',
	'Oeu042346.1' => 'oeu',
	'Oeu042671.1' => 'oeu',
	'Oeu043273.1' => 'oeu',
	'Oeu043573.1' => 'oeu',
	'Oeu044071.1' => 'oeu',
	'Oeu046813.1' => 'oeu',
	'Oeu048160.1' => 'oeu',
	'Oeu048162.1' => 'oeu',
	'Oeu048282.1' => 'oeu',
	'Oeu048297.1' => 'oeu',
	'Oeu048360.1' => 'oeu',
	'Oeu048565.1' => 'oeu',
	'Oeu049268.1' => 'oeu',
	'Oeu049465.1' => 'oeu',
	'Oeu049978.1' => 'oeu',
	'Oeu050628.1' => 'oeu',
	'Oeu050727.1' => 'oeu',
	'Oeu052065.1' => 'oeu',
	'Oeu052582.1' => 'oeu',
	'Oeu053090.1' => 'oeu',
	'Oeu053644.1' => 'oeu',
	'Oeu053713.1' => 'oeu',
	'Oeu055027.1' => 'oeu',
	'Oeu057741.1' => 'oeu',
	'Oeu058973.1' => 'oeu',
	'Oeu060366.1' => 'oeu',
	'Oeu061428.1' => 'oeu',
	'Oeu062087.1' => 'oeu',
	'Oeu062537.1' => 'oeu',
	'Oeu062538.1' => 'oeu',
	'Oeu064387.1' => 'oeu',
	'PGSC0003DMG400002344' => 'stu',
	'PGSC0003DMG400004046' => 'stu',
	'PGSC0003DMG400006418' => 'stu',
	'PGSC0003DMG400008410' => 'stu',
	'PGSC0003DMG400008620' => 'stu',
	'PGSC0003DMG400009504' => 'stu',
	'PGSC0003DMG400009845' => 'stu',
	'PGSC0003DMG400011177' => 'stu',
	'PGSC0003DMG400011629' => 'stu',
	'PGSC0003DMG400013586' => 'stu',
	'PGSC0003DMG400013599' => 'stu',
	'PGSC0003DMG400014534' => 'stu',
	'PGSC0003DMG400016055' => 'stu',
	'PGSC0003DMG400016736' => 'stu',
	'PGSC0003DMG400016866' => 'stu',
	'PGSC0003DMG400017701' => 'stu',
	'PGSC0003DMG400018448' => 'stu',
	'PGSC0003DMG400020751' => 'stu',
	'PGSC0003DMG400021088' => 'stu',
	'PGSC0003DMG400021387' => 'stu',
	'PGSC0003DMG400021640' => 'stu',
	'PGSC0003DMG400021704' => 'stu',
	'PGSC0003DMG400022155' => 'stu',
	'PGSC0003DMG400023544' => 'stu',
	'PGSC0003DMG400023564' => 'stu',
	'PGSC0003DMG400028558' => 'stu',
	'PGSC0003DMG400028618' => 'stu',
	'PGSC0003DMG400029149' => 'stu',
	'PGSC0003DMG400029979' => 'stu',
	'PGSC0003DMG400030069' => 'stu',
	'PGSC0003DMG400031272' => 'stu',
	'PGSC0003DMG400034656' => 'stu',
	'PGSC0003DMG400035151' => 'stu',
	'PGSC0003DMG400035741' => 'stu',
	'PGSC0003DMG400036100' => 'stu',
	'PGSC0003DMG400037683' => 'stu',
	'PGSC0003DMG400038046' => 'stu',
	'PGSC0003DMG400040121' => 'stu',
	'PGSC0003DMG400042113' => 'stu',
	'PGSC0003DMG400042218' => 'stu',
	'PGSC0003DMG400044188' => 'stu',
	'PGSC0003DMG400044323' => 'stu',
	'PGSC0003DMG400045014' => 'stu',
	'PGSC0003DMG400045177' => 'stu',
	'PGSC0003DMG400047199' => 'stu',
	'Potri.017G071366' => 'ptr',
	'RcHm_v2.0_Chr2g0137481' => 'rch',
	'Sc20g0003180' => 'sci',
	'SEGI_00305' => 'sgi',
	'SEGI_02246' => 'sgi',
	'SEGI_03696' => 'sgi',
	'SEGI_05490' => 'sgi',
	'SEGI_05682' => 'sgi',
	'SEGI_05900' => 'sgi',
	'SEGI_06517' => 'sgi',
	'SEGI_12587' => 'sgi',
	'SEGI_13129' => 'sgi',
	'SEGI_16935' => 'sgi',
	'SEGI_18008' => 'sgi',
	'SEGI_18224' => 'sgi',
	'SEGI_20188' => 'sgi',
	'SEGI_20772' => 'sgi',
	'SEGI_20842' => 'sgi',
	'SEGI_22270' => 'sgi',
	'SEGI_22705' => 'sgi',
	'SEGI_23638' => 'sgi',
	'SEGI_23928' => 'sgi',
	'SEGI_24790' => 'sgi',
	'SEGI_28421' => 'sgi',
	'SEGI_28832' => 'sgi',
	'SEGI_29884' => 'sgi',
	'SEGI_30829' => 'sgi',
	'SEGI_35046' => 'sgi',
	'SEGI_35582' => 'sgi',
	'SEGI_37882' => 'sgi',
	'SEGI_39680' => 'sgi',
	'SEGI_40069' => 'sgi',
	'SEGI_40087' => 'sgi',
	'SEGI_41606' => 'sgi',
	'SGA_v2.0_scaffold50G18578' => 'sas',
	'SHI00293' => 'shi',
	'SHI00389' => 'shi',
	'SHI00445' => 'shi',
	'SHI01000' => 'shi',
	'SHI01503' => 'shi',
	'SHI01718' => 'shi',
	'SHI03454' => 'shi',
	'SHI03493' => 'shi',
	'SHI03494' => 'shi',
	'SHI03628' => 'shi',
	'SHI04457' => 'shi',
	'SHI04691' => 'shi',
	'SHI04829' => 'shi',
	'SHI05225' => 'shi',
	'SHI06326' => 'shi',
	'SHI06505' => 'shi',
	'SHI06770' => 'shi',
	'SHI07388' => 'shi',
	'SHI07582' => 'shi',
	'SHI07583' => 'shi',
	'SHI08271' => 'shi',
	'SHI10619' => 'shi',
	'SHI10892' => 'shi',
	'SHI10910' => 'shi',
	'SHI10911' => 'shi',
	'SHI14326' => 'shi',
	'SHI14681' => 'shi',
	'SHI15017' => 'shi',
	'SHI15096' => 'shi',
	'SHI15120' => 'shi',
	'SHI15274' => 'shi',
	'SHI16232' => 'shi',
	'SHI16811' => 'shi',
	'SHI17386' => 'shi',
	'SHI17926' => 'shi',
	'SHI18293' => 'shi',
	'SHI20489' => 'shi',
	'SHI20658' => 'shi',
	'SHI20663' => 'shi',
	'SHI21566' => 'shi',
	'SHI22547' => 'shi',
	'SHI22708' => 'shi',
	'SHI22709' => 'shi',
	'SHI22878' => 'shi',
	'SHI22879' => 'shi',
	'SHI23024' => 'shi',
	'SHI25053' => 'shi',
	'SHI25076' => 'shi',
	'SHI25116' => 'shi',
	'SHI25381' => 'shi',
	'SHI25535' => 'shi',
	'SHI25740' => 'shi',
	'SHI25991' => 'shi',
	'SHI26344' => 'shi',
	'SHI26345' => 'shi',
	'SHI27097' => 'shi',
	'SHI27140' => 'shi',
	'SHI27178' => 'shi',
	'SHI27207' => 'shi',
	'SHI27225' => 'shi',
	'SHI27734' => 'shi',
	'SHI27806' => 'shi',
	'SHI28576' => 'shi',
	'SHI29081' => 'shi',
	'SHI30038' => 'shi',
	'SHI30394' => 'shi',
	'SHI30652' => 'shi',
	'SHI32154' => 'shi',
	'SHI32205' => 'shi',
	'SHI32365' => 'shi',
	'SHI32439' => 'shi',
	'SHI32505' => 'shi',
	'SHI32626' => 'shi',
	'SHI32714' => 'shi',
	'SHI32715' => 'shi',
	'SHI32716' => 'shi',
	'SHI33118' => 'shi',
	'SHI33318' => 'shi',
	'SHI33373' => 'shi',
	'SHI33512' => 'shi',
	'SHI33625' => 'shi',
	'SHI34327' => 'shi',
	'SHI35604' => 'shi',
	'SHI36119' => 'shi',
	'SHI36120' => 'shi',
	'SHI44959' => 'shi',
	'SHI46406' => 'shi',
	'SHI48191' => 'shi',
	'SHI48192' => 'shi',
	'Solyc10g150111.1' => 'sly',
	'Solyc12g062340.2' => 'sly',
	'Sopen00g001750' => 'spe',
	'Sopen00g001820' => 'spe',
	'Sopen00g001830' => 'spe',
	'Sopen00g001890' => 'spe',
	'Sopen00g002240' => 'spe',
	'Sopen00g003950' => 'spe',
	'Sopen00g004130' => 'spe',
	'Sopen00g004810' => 'spe',
	'Sopen00g005120' => 'spe',
	'Sopen00g005190' => 'spe',
	'Sopen00g007000' => 'spe',
	'Sopen00g007210' => 'spe',
	'Sopen00g012840' => 'spe',
	'Sopen00g013060' => 'spe',
	'Sopen00g013610' => 'spe',
	'Sopen00g013630' => 'spe',
	'Sopen01g004610' => 'spe',
	'Sopen01g007660' => 'spe',
	'Sopen01g007750' => 'spe',
	'Sopen01g007760' => 'spe',
	'Sopen01g007770' => 'spe',
	'Sopen01g007860' => 'spe',
	'Sopen01g009130' => 'spe',
	'Sopen01g009820' => 'spe',
	'Sopen01g011240' => 'spe',
	'Sopen01g012740' => 'spe',
	'Sopen01g013840' => 'spe',
	'Sopen01g013850' => 'spe',
	'Sopen01g016140' => 'spe',
	'Sopen01g016150' => 'spe',
	'Sopen01g016830' => 'spe',
	'Sopen01g017260' => 'spe',
	'Sopen01g019000' => 'spe',
	'Sopen01g019690' => 'spe',
	'Sopen01g022160' => 'spe',
	'Sopen01g024000' => 'spe',
	'Sopen01g024670' => 'spe',
	'Sopen01g024770' => 'spe',
	'Sopen01g024900' => 'spe',
	'Sopen01g025130' => 'spe',
	'Sopen01g026370' => 'spe',
	'Sopen01g041640' => 'spe',
	'Sopen01g046930' => 'spe',
	'Sopen02g001360' => 'spe',
	'Sopen02g002010' => 'spe',
	'Sopen02g003600' => 'spe',
	'Sopen02g003730' => 'spe',
	'Sopen02g005430' => 'spe',
	'Sopen02g005510' => 'spe',
	'Sopen02g006840' => 'spe',
	'Sopen02g007390' => 'spe',
	'Sopen02g007420' => 'spe',
	'Sopen02g007540' => 'spe',
	'Sopen02g007920' => 'spe',
	'Sopen02g008960' => 'spe',
	'Sopen02g009450' => 'spe',
	'Sopen02g009460' => 'spe',
	'Sopen02g011320' => 'spe',
	'Sopen02g012680' => 'spe',
	'Sopen02g018090' => 'spe',
	'Sopen02g022140' => 'spe',
	'Sopen03g010330' => 'spe',
	'Sopen03g013130' => 'spe',
	'Sopen03g013180' => 'spe',
	'Sopen03g013230' => 'spe',
	'Sopen03g014110' => 'spe',
	'Sopen03g015260' => 'spe',
	'Sopen03g015790' => 'spe',
	'Sopen03g018360' => 'spe',
	'Sopen03g024470' => 'spe',
	'Sopen03g026800' => 'spe',
	'Sopen04g003180' => 'spe',
	'Sopen04g008260' => 'spe',
	'Sopen04g010320' => 'spe',
	'Sopen04g011020' => 'spe',
	'Sopen04g011200' => 'spe',
	'Sopen04g011280' => 'spe',
	'Sopen04g021910' => 'spe',
	'Sopen04g023870' => 'spe',
	'Sopen05g009880' => 'spe',
	'Sopen05g011580' => 'spe',
	'Sopen05g012230' => 'spe',
	'Sopen05g012500' => 'spe',
	'Sopen05g012560' => 'spe',
	'Sopen05g012570' => 'spe',
	'Sopen05g012760' => 'spe',
	'Sopen05g013710' => 'spe',
	'Sopen05g015050' => 'spe',
	'Sopen05g026090' => 'spe',
	'Sopen05g028020' => 'spe',
	'Sopen05g028610' => 'spe',
	'Sopen05g029300' => 'spe',
	'Sopen06g005520' => 'spe',
	'Sopen06g006750' => 'spe',
	'Sopen06g008160' => 'spe',
	'Sopen06g009120' => 'spe',
	'Sopen06g013550' => 'spe',
	'Sopen06g015340' => 'spe',
	'Sopen06g018330' => 'spe',
	'Sopen06g021630' => 'spe',
	'Sopen06g021650' => 'spe',
	'Sopen07g006730' => 'spe',
	'Sopen07g008690' => 'spe',
	'Sopen07g008700' => 'spe',
	'Sopen07g008720' => 'spe',
	'Sopen07g008870' => 'spe',
	'Sopen07g009400' => 'spe',
	'Sopen07g009410' => 'spe',
	'Sopen07g009470' => 'spe',
	'Sopen07g009540' => 'spe',
	'Sopen07g011060' => 'spe',
	'Sopen07g011110' => 'spe',
	'Sopen07g011820' => 'spe',
	'Sopen07g013260' => 'spe',
	'Sopen07g014740' => 'spe',
	'Sopen07g015160' => 'spe',
	'Sopen07g015230' => 'spe',
	'Sopen07g016240' => 'spe',
	'Sopen07g017200' => 'spe',
	'Sopen07g017810' => 'spe',
	'Sopen07g019030' => 'spe',
	'Sopen07g020430' => 'spe',
	'Sopen07g021010' => 'spe',
	'Sopen07g021340' => 'spe',
	'Sopen07g022950' => 'spe',
	'Sopen07g027860' => 'spe',
	'Sopen08g007820' => 'spe',
	'Sopen08g009330' => 'spe',
	'Sopen08g012310' => 'spe',
	'Sopen08g012560' => 'spe',
	'Sopen08g014040' => 'spe',
	'Sopen08g014650' => 'spe',
	'Sopen08g017020' => 'spe',
	'Sopen08g018300' => 'spe',
	'Sopen08g020530' => 'spe',
	'Sopen09g008590' => 'spe',
	'Sopen09g008780' => 'spe',
	'Sopen09g011540' => 'spe',
	'Sopen09g011920' => 'spe',
	'Sopen09g014170' => 'spe',
	'Sopen09g016520' => 'spe',
	'Sopen09g021030' => 'spe',
	'Sopen09g023110' => 'spe',
	'Sopen09g024750' => 'spe',
	'Sopen09g025230' => 'spe',
	'Sopen09g025600' => 'spe',
	'Sopen09g034660' => 'spe',
	'Sopen10g006700' => 'spe',
	'Sopen10g009130' => 'spe',
	'Sopen10g009140' => 'spe',
	'Sopen10g009560' => 'spe',
	'Sopen10g010340' => 'spe',
	'Sopen10g011040' => 'spe',
	'Sopen10g013650' => 'spe',
	'Sopen10g014130' => 'spe',
	'Sopen10g014140' => 'spe',
	'Sopen10g014760' => 'spe',
	'Sopen10g015080' => 'spe',
	'Sopen10g015830' => 'spe',
	'Sopen10g018240' => 'spe',
	'Sopen10g018300' => 'spe',
	'Sopen10g018350' => 'spe',
	'Sopen10g018460' => 'spe',
	'Sopen10g018670' => 'spe',
	'Sopen10g019040' => 'spe',
	'Sopen10g019330' => 'spe',
	'Sopen10g019340' => 'spe',
	'Sopen10g019360' => 'spe',
	'Sopen10g019370' => 'spe',
	'Sopen10g020620' => 'spe',
	'Sopen10g021550' => 'spe',
	'Sopen10g022160' => 'spe',
	'Sopen10g023540' => 'spe',
	'Sopen10g023570' => 'spe',
	'Sopen10g023580' => 'spe',
	'Sopen10g023600' => 'spe',
	'Sopen10g023620' => 'spe',
	'Sopen10g023650' => 'spe',
	'Sopen10g024800' => 'spe',
	'Sopen10g026170' => 'spe',
	'Sopen11g007790' => 'spe',
	'Sopen11g010170' => 'spe',
	'Sopen11g010580' => 'spe',
	'Sopen11g013420' => 'spe',
	'Sopen11g016330' => 'spe',
	'Sopen11g017010' => 'spe',
	'Sopen11g018110' => 'spe',
	'Sopen11g018960' => 'spe',
	'Sopen11g019000' => 'spe',
	'Sopen11g019970' => 'spe',
	'Sopen11g020340' => 'spe',
	'Sopen11g020970' => 'spe',
	'Sopen12g008510' => 'spe',
	'Sopen12g008910' => 'spe',
	'Sopen12g009010' => 'spe',
	'Sopen12g009120' => 'spe',
	'Sopen12g009340' => 'spe',
	'Sopen12g009580' => 'spe',
	'Sopen12g010190' => 'spe',
	'Sopen12g010320' => 'spe',
	'Sopen12g010370' => 'spe',
	'Sopen12g012140' => 'spe',
	'Sopen12g012700' => 'spe',
	'Sopen12g013490' => 'spe',
	'Sopen12g014290' => 'spe',
	'Sopen12g015060' => 'spe',
	'Sopen12g015610' => 'spe',
	'Sopen12g018380' => 'spe',
	'Sopen12g019150' => 'spe',
	'Sopen12g020560' => 'spe',
	'Sopen12g023320' => 'spe',
	'Sp3g24190' => 'spa',
	'Sp4g07270' => 'spa',
	'Sp4g07530' => 'spa',
	'Sp4g07670' => 'spa',
	'Sp6g09360' => 'spa',
	'Sp7g04180' => 'spa',
	'Sp7g04980' => 'spa',
	'Sp7g08200' => 'spa',
	'Sp7g09660' => 'spa',
	'SpUn0081_0010' => 'spa',
	'THA.LOC104803417' => 'tha',
	'THA.LOC104817059' => 'tha',
	'Thecc.01G188700' => 'tca',
	'Thecc.05G106700' => 'tca',
	'Thecc.06G068800' => 'tca',
	'Thecc.07G189100' => 'tca',
	'Thecc.09G172800' => 'tca',
	'Thhalv10023044m.g' => 'esa',
	'Thhalv10023881m.g' => 'esa',
	'Thhalv10024067m.g' => 'esa'
)
$gf_id = 'HOM05D000691'
$gf_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$gf_types_configuration = array(
	'HOMFAM' => array(
		'order' => '1',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	),
	'ORTHOFAM' => array(
		'order' => '2',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	)
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$allow_async_use = true
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D000691'
)
$data_identifier = 'HOM05D000691'
$data_type = 'gf_id'
$species_gene_counts = array(
	'amhyb' => (int) 18,
	'aly' => (int) 1,
	'atr' => (int) 21,
	'acertr' => (int) 1,
	'cqu' => (int) 90,
	'bol' => (int) 1,
	'can' => (int) 7,
	'cil' => (int) 3,
	'cla' => (int) 15,
	'col' => (int) 1,
	'cpa' => (int) 2,
	'csa' => (int) 7,
	'camsi' => (int) 10,
	'din' => (int) 1,
	'dzi' => (int) 2,
	'bvu' => (int) 18,
	'fve' => (int) 22,
	'gra' => (int) 1,
	'han' => (int) 7,
	'hma' => (int) 9,
	'sun' => (int) 16,
	'lonja' => (int) 46,
	'mes' => (int) 8,
	'mbi' => (int) 2,
	'cme' => (int) 6,
	'oeu' => (int) 110,
	'stu' => (int) 45,
	'ptr' => (int) 1,
	'rch' => (int) 1,
	'sci' => (int) 1,
	'sgi' => (int) 31,
	'sas' => (int) 1,
	'shi' => (int) 89,
	'sly' => (int) 2,
	'spe' => (int) 211,
	'spa' => (int) 10,
	'tha' => (int) 2,
	'tca' => (int) 5,
	'esa' => (int) 3
)
$gf_gene_species = 'esa'
$gf_gene_id = 'Thhalv10024067m.g'
$species_info = array(
	'species' => 'lonja',
	'common_name' => 'Lonicera japonica',
	'tax_id' => '105884',
	'version' => 'v1.0'
)
$local_species = 'lonja'
$disabled = ''
$selected = ''
$num_hits = (int) 0
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Analysis/custom_tree_creation.ctp, line 27
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933

Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]
Code Context
        $disabled    = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";

        $selected    = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";

        $num_hits    = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D000691',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '827',
		'num_species' => '39'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'gf_genes' => array(
		'Ah.01g012340' => 'amhyb',
		'Ah.01g013530' => 'amhyb',
		'Ah.03g143080' => 'amhyb',
		'Ah.06g186750' => 'amhyb',
		'Ah.06g186800' => 'amhyb',
		'Ah.07g200050' => 'amhyb',
		'Ah.08g209110' => 'amhyb',
		'Ah.09g229600' => 'amhyb',
		'Ah.09g229610' => 'amhyb',
		'Ah.10g026490' => 'amhyb',
		'Ah.12g065350' => 'amhyb',
		'Ah.13g069310' => 'amhyb',
		'Ah.14g080130' => 'amhyb',
		'Ah.14g081130' => 'amhyb',
		'Ah.14g081140' => 'amhyb',
		'Ah.16g109160' => 'amhyb',
		'Ah.16g109170' => 'amhyb',
		'Ah.16g109370' => 'amhyb',
		'AL3G47720' => 'aly',
		'ATR0012G060' => 'atr',
		'ATR0026G029' => 'atr',
		'ATR0193G043' => 'atr',
		'ATR0561G076' => 'atr',
		'ATR0561G181' => 'atr',
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		'SEGI_18008' => 'sgi',
		'SEGI_18224' => 'sgi',
		'SEGI_20188' => 'sgi',
		'SEGI_20772' => 'sgi',
		'SEGI_20842' => 'sgi',
		'SEGI_22270' => 'sgi',
		'SEGI_22705' => 'sgi',
		'SEGI_23638' => 'sgi',
		'SEGI_23928' => 'sgi',
		'SEGI_24790' => 'sgi',
		'SEGI_28421' => 'sgi',
		'SEGI_28832' => 'sgi',
		'SEGI_29884' => 'sgi',
		'SEGI_30829' => 'sgi',
		'SEGI_35046' => 'sgi',
		'SEGI_35582' => 'sgi',
		'SEGI_37882' => 'sgi',
		'SEGI_39680' => 'sgi',
		'SEGI_40069' => 'sgi',
		'SEGI_40087' => 'sgi',
		'SEGI_41606' => 'sgi',
		'SGA_v2.0_scaffold50G18578' => 'sas',
		'SHI00293' => 'shi',
		'SHI00389' => 'shi',
		'SHI00445' => 'shi',
		'SHI01000' => 'shi',
		'SHI01503' => 'shi',
		'SHI01718' => 'shi',
		'SHI03454' => 'shi',
		'SHI03493' => 'shi',
		'SHI03494' => 'shi',
		'SHI03628' => 'shi',
		'SHI04457' => 'shi',
		'SHI04691' => 'shi',
		'SHI04829' => 'shi',
		'SHI05225' => 'shi',
		'SHI06326' => 'shi',
		'SHI06505' => 'shi',
		'SHI06770' => 'shi',
		'SHI07388' => 'shi',
		'SHI07582' => 'shi',
		'SHI07583' => 'shi',
		'SHI08271' => 'shi',
		'SHI10619' => 'shi',
		'SHI10892' => 'shi',
		'SHI10910' => 'shi',
		'SHI10911' => 'shi',
		'SHI14326' => 'shi',
		'SHI14681' => 'shi',
		'SHI15017' => 'shi',
		'SHI15096' => 'shi',
		'SHI15120' => 'shi',
		'SHI15274' => 'shi',
		'SHI16232' => 'shi',
		'SHI16811' => 'shi',
		'SHI17386' => 'shi',
		'SHI17926' => 'shi',
		'SHI18293' => 'shi',
		'SHI20489' => 'shi',
		'SHI20658' => 'shi',
		'SHI20663' => 'shi',
		'SHI21566' => 'shi',
		'SHI22547' => 'shi',
		'SHI22708' => 'shi',
		'SHI22709' => 'shi',
		'SHI22878' => 'shi',
		'SHI22879' => 'shi',
		'SHI23024' => 'shi',
		'SHI25053' => 'shi',
		'SHI25076' => 'shi',
		'SHI25116' => 'shi',
		'SHI25381' => 'shi',
		'SHI25535' => 'shi',
		'SHI25740' => 'shi',
		'SHI25991' => 'shi',
		'SHI26344' => 'shi',
		'SHI26345' => 'shi',
		'SHI27097' => 'shi',
		'SHI27140' => 'shi',
		'SHI27178' => 'shi',
		'SHI27207' => 'shi',
		'SHI27225' => 'shi',
		'SHI27734' => 'shi',
		'SHI27806' => 'shi',
		'SHI28576' => 'shi',
		'SHI29081' => 'shi',
		'SHI30038' => 'shi',
		'SHI30394' => 'shi',
		'SHI30652' => 'shi',
		'SHI32154' => 'shi',
		'SHI32205' => 'shi',
		'SHI32365' => 'shi',
		'SHI32439' => 'shi',
		'SHI32505' => 'shi',
		'SHI32626' => 'shi',
		'SHI32714' => 'shi',
		'SHI32715' => 'shi',
		'SHI32716' => 'shi',
		'SHI33118' => 'shi',
		'SHI33318' => 'shi',
		'SHI33373' => 'shi',
		'SHI33512' => 'shi',
		'SHI33625' => 'shi',
		'SHI34327' => 'shi',
		'SHI35604' => 'shi',
		'SHI36119' => 'shi',
		'SHI36120' => 'shi',
		'SHI44959' => 'shi',
		'SHI46406' => 'shi',
		'SHI48191' => 'shi',
		'SHI48192' => 'shi',
		'Solyc10g150111.1' => 'sly',
		'Solyc12g062340.2' => 'sly',
		'Sopen00g001750' => 'spe',
		'Sopen00g001820' => 'spe',
		'Sopen00g001830' => 'spe',
		'Sopen00g001890' => 'spe',
		'Sopen00g002240' => 'spe',
		'Sopen00g003950' => 'spe',
		'Sopen00g004130' => 'spe',
		'Sopen00g004810' => 'spe',
		'Sopen00g005120' => 'spe',
		'Sopen00g005190' => 'spe',
		'Sopen00g007000' => 'spe',
		'Sopen00g007210' => 'spe',
		'Sopen00g012840' => 'spe',
		'Sopen00g013060' => 'spe',
		'Sopen00g013610' => 'spe',
		'Sopen00g013630' => 'spe',
		'Sopen01g004610' => 'spe',
		'Sopen01g007660' => 'spe',
		'Sopen01g007750' => 'spe',
		'Sopen01g007760' => 'spe',
		'Sopen01g007770' => 'spe',
		'Sopen01g007860' => 'spe',
		'Sopen01g009130' => 'spe',
		'Sopen01g009820' => 'spe',
		'Sopen01g011240' => 'spe',
		'Sopen01g012740' => 'spe',
		'Sopen01g013840' => 'spe',
		'Sopen01g013850' => 'spe',
		'Sopen01g016140' => 'spe',
		'Sopen01g016150' => 'spe',
		'Sopen01g016830' => 'spe',
		'Sopen01g017260' => 'spe',
		'Sopen01g019000' => 'spe',
		'Sopen01g019690' => 'spe',
		'Sopen01g022160' => 'spe',
		'Sopen01g024000' => 'spe',
		'Sopen01g024670' => 'spe',
		'Sopen01g024770' => 'spe',
		'Sopen01g024900' => 'spe',
		'Sopen01g025130' => 'spe',
		'Sopen01g026370' => 'spe',
		'Sopen01g041640' => 'spe',
		'Sopen01g046930' => 'spe',
		'Sopen02g001360' => 'spe',
		'Sopen02g002010' => 'spe',
		'Sopen02g003600' => 'spe',
		'Sopen02g003730' => 'spe',
		'Sopen02g005430' => 'spe',
		'Sopen02g005510' => 'spe',
		'Sopen02g006840' => 'spe',
		'Sopen02g007390' => 'spe',
		'Sopen02g007420' => 'spe',
		'Sopen02g007540' => 'spe',
		'Sopen02g007920' => 'spe',
		'Sopen02g008960' => 'spe',
		'Sopen02g009450' => 'spe',
		'Sopen02g009460' => 'spe',
		'Sopen02g011320' => 'spe',
		'Sopen02g012680' => 'spe',
		'Sopen02g018090' => 'spe',
		'Sopen02g022140' => 'spe',
		'Sopen03g010330' => 'spe',
		'Sopen03g013130' => 'spe',
		'Sopen03g013180' => 'spe',
		'Sopen03g013230' => 'spe',
		'Sopen03g014110' => 'spe',
		'Sopen03g015260' => 'spe',
		'Sopen03g015790' => 'spe',
		'Sopen03g018360' => 'spe',
		'Sopen03g024470' => 'spe',
		'Sopen03g026800' => 'spe',
		'Sopen04g003180' => 'spe',
		'Sopen04g008260' => 'spe',
		'Sopen04g010320' => 'spe',
		'Sopen04g011020' => 'spe',
		'Sopen04g011200' => 'spe',
		'Sopen04g011280' => 'spe',
		'Sopen04g021910' => 'spe',
		'Sopen04g023870' => 'spe',
		'Sopen05g009880' => 'spe',
		'Sopen05g011580' => 'spe',
		'Sopen05g012230' => 'spe',
		'Sopen05g012500' => 'spe',
		'Sopen05g012560' => 'spe',
		'Sopen05g012570' => 'spe',
		'Sopen05g012760' => 'spe',
		'Sopen05g013710' => 'spe',
		'Sopen05g015050' => 'spe',
		'Sopen05g026090' => 'spe',
		'Sopen05g028020' => 'spe',
		'Sopen05g028610' => 'spe',
		'Sopen05g029300' => 'spe',
		'Sopen06g005520' => 'spe',
		'Sopen06g006750' => 'spe',
		'Sopen06g008160' => 'spe',
		'Sopen06g009120' => 'spe',
		'Sopen06g013550' => 'spe',
		'Sopen06g015340' => 'spe',
		'Sopen06g018330' => 'spe',
		'Sopen06g021630' => 'spe',
		'Sopen06g021650' => 'spe',
		'Sopen07g006730' => 'spe',
		'Sopen07g008690' => 'spe',
		'Sopen07g008700' => 'spe',
		'Sopen07g008720' => 'spe',
		'Sopen07g008870' => 'spe',
		'Sopen07g009400' => 'spe',
		'Sopen07g009410' => 'spe',
		'Sopen07g009470' => 'spe',
		'Sopen07g009540' => 'spe',
		'Sopen07g011060' => 'spe',
		'Sopen07g011110' => 'spe',
		'Sopen07g011820' => 'spe',
		'Sopen07g013260' => 'spe',
		'Sopen07g014740' => 'spe',
		'Sopen07g015160' => 'spe',
		'Sopen07g015230' => 'spe',
		'Sopen07g016240' => 'spe',
		'Sopen07g017200' => 'spe',
		'Sopen07g017810' => 'spe',
		'Sopen07g019030' => 'spe',
		'Sopen07g020430' => 'spe',
		'Sopen07g021010' => 'spe',
		'Sopen07g021340' => 'spe',
		'Sopen07g022950' => 'spe',
		'Sopen07g027860' => 'spe',
		'Sopen08g007820' => 'spe',
		'Sopen08g009330' => 'spe',
		'Sopen08g012310' => 'spe',
		'Sopen08g012560' => 'spe',
		'Sopen08g014040' => 'spe',
		'Sopen08g014650' => 'spe',
		'Sopen08g017020' => 'spe',
		'Sopen08g018300' => 'spe',
		'Sopen08g020530' => 'spe',
		'Sopen09g008590' => 'spe',
		'Sopen09g008780' => 'spe',
		'Sopen09g011540' => 'spe',
		'Sopen09g011920' => 'spe',
		'Sopen09g014170' => 'spe',
		'Sopen09g016520' => 'spe',
		'Sopen09g021030' => 'spe',
		'Sopen09g023110' => 'spe',
		'Sopen09g024750' => 'spe',
		'Sopen09g025230' => 'spe',
		'Sopen09g025600' => 'spe',
		'Sopen09g034660' => 'spe',
		'Sopen10g006700' => 'spe',
		'Sopen10g009130' => 'spe',
		'Sopen10g009140' => 'spe',
		'Sopen10g009560' => 'spe',
		'Sopen10g010340' => 'spe',
		'Sopen10g011040' => 'spe',
		'Sopen10g013650' => 'spe',
		'Sopen10g014130' => 'spe',
		'Sopen10g014140' => 'spe',
		'Sopen10g014760' => 'spe',
		'Sopen10g015080' => 'spe',
		'Sopen10g015830' => 'spe',
		'Sopen10g018240' => 'spe',
		'Sopen10g018300' => 'spe',
		'Sopen10g018350' => 'spe',
		'Sopen10g018460' => 'spe',
		'Sopen10g018670' => 'spe',
		'Sopen10g019040' => 'spe',
		'Sopen10g019330' => 'spe',
		'Sopen10g019340' => 'spe',
		'Sopen10g019360' => 'spe',
		'Sopen10g019370' => 'spe',
		'Sopen10g020620' => 'spe',
		'Sopen10g021550' => 'spe',
		'Sopen10g022160' => 'spe',
		'Sopen10g023540' => 'spe',
		'Sopen10g023570' => 'spe',
		'Sopen10g023580' => 'spe',
		'Sopen10g023600' => 'spe',
		'Sopen10g023620' => 'spe',
		'Sopen10g023650' => 'spe',
		'Sopen10g024800' => 'spe',
		'Sopen10g026170' => 'spe',
		'Sopen11g007790' => 'spe',
		'Sopen11g010170' => 'spe',
		'Sopen11g010580' => 'spe',
		'Sopen11g013420' => 'spe',
		'Sopen11g016330' => 'spe',
		'Sopen11g017010' => 'spe',
		'Sopen11g018110' => 'spe',
		'Sopen11g018960' => 'spe',
		'Sopen11g019000' => 'spe',
		'Sopen11g019970' => 'spe',
		'Sopen11g020340' => 'spe',
		'Sopen11g020970' => 'spe',
		'Sopen12g008510' => 'spe',
		'Sopen12g008910' => 'spe',
		'Sopen12g009010' => 'spe',
		'Sopen12g009120' => 'spe',
		'Sopen12g009340' => 'spe',
		'Sopen12g009580' => 'spe',
		'Sopen12g010190' => 'spe',
		'Sopen12g010320' => 'spe',
		'Sopen12g010370' => 'spe',
		'Sopen12g012140' => 'spe',
		'Sopen12g012700' => 'spe',
		'Sopen12g013490' => 'spe',
		'Sopen12g014290' => 'spe',
		'Sopen12g015060' => 'spe',
		'Sopen12g015610' => 'spe',
		'Sopen12g018380' => 'spe',
		'Sopen12g019150' => 'spe',
		'Sopen12g020560' => 'spe',
		'Sopen12g023320' => 'spe',
		'Sp3g24190' => 'spa',
		'Sp4g07270' => 'spa',
		'Sp4g07530' => 'spa',
		'Sp4g07670' => 'spa',
		'Sp6g09360' => 'spa',
		'Sp7g04180' => 'spa',
		'Sp7g04980' => 'spa',
		'Sp7g08200' => 'spa',
		'Sp7g09660' => 'spa',
		'SpUn0081_0010' => 'spa',
		'THA.LOC104803417' => 'tha',
		'THA.LOC104817059' => 'tha',
		'Thecc.01G188700' => 'tca',
		'Thecc.05G106700' => 'tca',
		'Thecc.06G068800' => 'tca',
		'Thecc.07G189100' => 'tca',
		'Thecc.09G172800' => 'tca',
		'Thhalv10023044m.g' => 'esa',
		'Thhalv10023881m.g' => 'esa',
		'Thhalv10024067m.g' => 'esa'
	),
	'gf_id' => 'HOM05D000691',
	'gf_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'gf_types_configuration' => array(
		'HOMFAM' => array(
			'order' => '1',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		),
		'ORTHOFAM' => array(
			'order' => '2',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		)
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'allow_async_use' => true,
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D000691'
	),
	'data_identifier' => 'HOM05D000691',
	'data_type' => 'gf_id'
)
$sidebar_info = array(
	'gf_id' => 'HOM05D000691',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '827',
	'num_species' => '39'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$gf_genes = array(
	'Ah.01g012340' => 'amhyb',
	'Ah.01g013530' => 'amhyb',
	'Ah.03g143080' => 'amhyb',
	'Ah.06g186750' => 'amhyb',
	'Ah.06g186800' => 'amhyb',
	'Ah.07g200050' => 'amhyb',
	'Ah.08g209110' => 'amhyb',
	'Ah.09g229600' => 'amhyb',
	'Ah.09g229610' => 'amhyb',
	'Ah.10g026490' => 'amhyb',
	'Ah.12g065350' => 'amhyb',
	'Ah.13g069310' => 'amhyb',
	'Ah.14g080130' => 'amhyb',
	'Ah.14g081130' => 'amhyb',
	'Ah.14g081140' => 'amhyb',
	'Ah.16g109160' => 'amhyb',
	'Ah.16g109170' => 'amhyb',
	'Ah.16g109370' => 'amhyb',
	'AL3G47720' => 'aly',
	'ATR0012G060' => 'atr',
	'ATR0026G029' => 'atr',
	'ATR0193G043' => 'atr',
	'ATR0561G076' => 'atr',
	'ATR0561G181' => 'atr',
	'ATR0568G014' => 'atr',
	'ATR0568G114' => 'atr',
	'ATR0620G039' => 'atr',
	'ATR0629G125' => 'atr',
	'ATR0661G583' => 'atr',
	'ATR0686G019' => 'atr',
	'ATR0693G232' => 'atr',
	'ATR0697G104' => 'atr',
	'ATR0789G146' => 'atr',
	'ATR0794G066' => 'atr',
	'ATR1127G127' => 'atr',
	'ATR1131G040' => 'atr',
	'ATR1134G004' => 'atr',
	'ATR1134G095' => 'atr',
	'ATR1152G110' => 'atr',
	'ATR1153G065' => 'atr',
	'Atru.chr3.2296' => 'acertr',
	'AUR62000692' => 'cqu',
	'AUR62001473' => 'cqu',
	'AUR62001812' => 'cqu',
	'AUR62002706' => 'cqu',
	'AUR62003904' => 'cqu',
	'AUR62003905' => 'cqu',
	'AUR62004840' => 'cqu',
	'AUR62005160' => 'cqu',
	'AUR62005604' => 'cqu',
	'AUR62005891' => 'cqu',
	'AUR62007290' => 'cqu',
	'AUR62007502' => 'cqu',
	'AUR62007923' => 'cqu',
	'AUR62009972' => 'cqu',
	'AUR62010488' => 'cqu',
	'AUR62010643' => 'cqu',
	'AUR62012637' => 'cqu',
	'AUR62013492' => 'cqu',
	'AUR62014239' => 'cqu',
	'AUR62014878' => 'cqu',
	'AUR62015857' => 'cqu',
	'AUR62016224' => 'cqu',
	'AUR62017430' => 'cqu',
	'AUR62017467' => 'cqu',
	'AUR62018234' => 'cqu',
	'AUR62019060' => 'cqu',
	'AUR62019607' => 'cqu',
	'AUR62019661' => 'cqu',
	'AUR62022775' => 'cqu',
	'AUR62023603' => 'cqu',
	'AUR62024563' => 'cqu',
	'AUR62026199' => 'cqu',
	'AUR62026905' => 'cqu',
	'AUR62028639' => 'cqu',
	'AUR62029168' => 'cqu',
	'AUR62029551' => 'cqu',
	'AUR62029860' => 'cqu',
	'AUR62030164' => 'cqu',
	'AUR62031208' => 'cqu',
	'AUR62031287' => 'cqu',
	'AUR62031817' => 'cqu',
	'AUR62032126' => 'cqu',
	'AUR62032358' => 'cqu',
	'AUR62032884' => 'cqu',
	'AUR62032892' => 'cqu',
	'AUR62033082' => 'cqu',
	'AUR62033100' => 'cqu',
	'AUR62033255' => 'cqu',
	'AUR62033698' => 'cqu',
	'AUR62033757' => 'cqu',
	'AUR62034760' => 'cqu',
	'AUR62034860' => 'cqu',
	'AUR62035179' => 'cqu',
	'AUR62035881' => 'cqu',
	'AUR62036824' => 'cqu',
	'AUR62036876' => 'cqu',
	'AUR62037319' => 'cqu',
	'AUR62037362' => 'cqu',
	'AUR62037541' => 'cqu',
	'AUR62037853' => 'cqu',
	'AUR62038299' => 'cqu',
	'AUR62038563' => 'cqu',
	'AUR62038564' => 'cqu',
	'AUR62038594' => 'cqu',
	'AUR62038792' => 'cqu',
	'AUR62038947' => 'cqu',
	'AUR62039030' => 'cqu',
	'AUR62039231' => 'cqu',
	'AUR62039452' => 'cqu',
	'AUR62040334' => 'cqu',
	'AUR62040869' => 'cqu',
	'AUR62040870' => 'cqu',
	'AUR62040916' => 'cqu',
	'AUR62041199' => 'cqu',
	'AUR62041334' => 'cqu',
	'AUR62041608' => 'cqu',
	'AUR62041609' => 'cqu',
	'AUR62041833' => 'cqu',
	'AUR62041834' => 'cqu',
	'AUR62042054' => 'cqu',
	'AUR62042134' => 'cqu',
	'AUR62042236' => 'cqu',
	'AUR62042281' => 'cqu',
	'AUR62042593' => 'cqu',
	'AUR62042653' => 'cqu',
	'AUR62043025' => 'cqu',
	'AUR62043026' => 'cqu',
	'AUR62043063' => 'cqu',
	'AUR62043091' => 'cqu',
	'AUR62043320' => 'cqu',
	'BolC5t32558H' => 'bol',
	'CAN.G1036.12' => 'can',
	'CAN.G1432.23' => 'can',
	'CAN.G159.19' => 'can',
	'CAN.G4114.1' => 'can',
	'CAN.G492.85' => 'can',
	'CAN.G500.95' => 'can',
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	'Sopen02g005430' => 'spe',
	'Sopen02g005510' => 'spe',
	'Sopen02g006840' => 'spe',
	'Sopen02g007390' => 'spe',
	'Sopen02g007420' => 'spe',
	'Sopen02g007540' => 'spe',
	'Sopen02g007920' => 'spe',
	'Sopen02g008960' => 'spe',
	'Sopen02g009450' => 'spe',
	'Sopen02g009460' => 'spe',
	'Sopen02g011320' => 'spe',
	'Sopen02g012680' => 'spe',
	'Sopen02g018090' => 'spe',
	'Sopen02g022140' => 'spe',
	'Sopen03g010330' => 'spe',
	'Sopen03g013130' => 'spe',
	'Sopen03g013180' => 'spe',
	'Sopen03g013230' => 'spe',
	'Sopen03g014110' => 'spe',
	'Sopen03g015260' => 'spe',
	'Sopen03g015790' => 'spe',
	'Sopen03g018360' => 'spe',
	'Sopen03g024470' => 'spe',
	'Sopen03g026800' => 'spe',
	'Sopen04g003180' => 'spe',
	'Sopen04g008260' => 'spe',
	'Sopen04g010320' => 'spe',
	'Sopen04g011020' => 'spe',
	'Sopen04g011200' => 'spe',
	'Sopen04g011280' => 'spe',
	'Sopen04g021910' => 'spe',
	'Sopen04g023870' => 'spe',
	'Sopen05g009880' => 'spe',
	'Sopen05g011580' => 'spe',
	'Sopen05g012230' => 'spe',
	'Sopen05g012500' => 'spe',
	'Sopen05g012560' => 'spe',
	'Sopen05g012570' => 'spe',
	'Sopen05g012760' => 'spe',
	'Sopen05g013710' => 'spe',
	'Sopen05g015050' => 'spe',
	'Sopen05g026090' => 'spe',
	'Sopen05g028020' => 'spe',
	'Sopen05g028610' => 'spe',
	'Sopen05g029300' => 'spe',
	'Sopen06g005520' => 'spe',
	'Sopen06g006750' => 'spe',
	'Sopen06g008160' => 'spe',
	'Sopen06g009120' => 'spe',
	'Sopen06g013550' => 'spe',
	'Sopen06g015340' => 'spe',
	'Sopen06g018330' => 'spe',
	'Sopen06g021630' => 'spe',
	'Sopen06g021650' => 'spe',
	'Sopen07g006730' => 'spe',
	'Sopen07g008690' => 'spe',
	'Sopen07g008700' => 'spe',
	'Sopen07g008720' => 'spe',
	'Sopen07g008870' => 'spe',
	'Sopen07g009400' => 'spe',
	'Sopen07g009410' => 'spe',
	'Sopen07g009470' => 'spe',
	'Sopen07g009540' => 'spe',
	'Sopen07g011060' => 'spe',
	'Sopen07g011110' => 'spe',
	'Sopen07g011820' => 'spe',
	'Sopen07g013260' => 'spe',
	'Sopen07g014740' => 'spe',
	'Sopen07g015160' => 'spe',
	'Sopen07g015230' => 'spe',
	'Sopen07g016240' => 'spe',
	'Sopen07g017200' => 'spe',
	'Sopen07g017810' => 'spe',
	'Sopen07g019030' => 'spe',
	'Sopen07g020430' => 'spe',
	'Sopen07g021010' => 'spe',
	'Sopen07g021340' => 'spe',
	'Sopen07g022950' => 'spe',
	'Sopen07g027860' => 'spe',
	'Sopen08g007820' => 'spe',
	'Sopen08g009330' => 'spe',
	'Sopen08g012310' => 'spe',
	'Sopen08g012560' => 'spe',
	'Sopen08g014040' => 'spe',
	'Sopen08g014650' => 'spe',
	'Sopen08g017020' => 'spe',
	'Sopen08g018300' => 'spe',
	'Sopen08g020530' => 'spe',
	'Sopen09g008590' => 'spe',
	'Sopen09g008780' => 'spe',
	'Sopen09g011540' => 'spe',
	'Sopen09g011920' => 'spe',
	'Sopen09g014170' => 'spe',
	'Sopen09g016520' => 'spe',
	'Sopen09g021030' => 'spe',
	'Sopen09g023110' => 'spe',
	'Sopen09g024750' => 'spe',
	'Sopen09g025230' => 'spe',
	'Sopen09g025600' => 'spe',
	'Sopen09g034660' => 'spe',
	'Sopen10g006700' => 'spe',
	'Sopen10g009130' => 'spe',
	'Sopen10g009140' => 'spe',
	'Sopen10g009560' => 'spe',
	'Sopen10g010340' => 'spe',
	'Sopen10g011040' => 'spe',
	'Sopen10g013650' => 'spe',
	'Sopen10g014130' => 'spe',
	'Sopen10g014140' => 'spe',
	'Sopen10g014760' => 'spe',
	'Sopen10g015080' => 'spe',
	'Sopen10g015830' => 'spe',
	'Sopen10g018240' => 'spe',
	'Sopen10g018300' => 'spe',
	'Sopen10g018350' => 'spe',
	'Sopen10g018460' => 'spe',
	'Sopen10g018670' => 'spe',
	'Sopen10g019040' => 'spe',
	'Sopen10g019330' => 'spe',
	'Sopen10g019340' => 'spe',
	'Sopen10g019360' => 'spe',
	'Sopen10g019370' => 'spe',
	'Sopen10g020620' => 'spe',
	'Sopen10g021550' => 'spe',
	'Sopen10g022160' => 'spe',
	'Sopen10g023540' => 'spe',
	'Sopen10g023570' => 'spe',
	'Sopen10g023580' => 'spe',
	'Sopen10g023600' => 'spe',
	'Sopen10g023620' => 'spe',
	'Sopen10g023650' => 'spe',
	'Sopen10g024800' => 'spe',
	'Sopen10g026170' => 'spe',
	'Sopen11g007790' => 'spe',
	'Sopen11g010170' => 'spe',
	'Sopen11g010580' => 'spe',
	'Sopen11g013420' => 'spe',
	'Sopen11g016330' => 'spe',
	'Sopen11g017010' => 'spe',
	'Sopen11g018110' => 'spe',
	'Sopen11g018960' => 'spe',
	'Sopen11g019000' => 'spe',
	'Sopen11g019970' => 'spe',
	'Sopen11g020340' => 'spe',
	'Sopen11g020970' => 'spe',
	'Sopen12g008510' => 'spe',
	'Sopen12g008910' => 'spe',
	'Sopen12g009010' => 'spe',
	'Sopen12g009120' => 'spe',
	'Sopen12g009340' => 'spe',
	'Sopen12g009580' => 'spe',
	'Sopen12g010190' => 'spe',
	'Sopen12g010320' => 'spe',
	'Sopen12g010370' => 'spe',
	'Sopen12g012140' => 'spe',
	'Sopen12g012700' => 'spe',
	'Sopen12g013490' => 'spe',
	'Sopen12g014290' => 'spe',
	'Sopen12g015060' => 'spe',
	'Sopen12g015610' => 'spe',
	'Sopen12g018380' => 'spe',
	'Sopen12g019150' => 'spe',
	'Sopen12g020560' => 'spe',
	'Sopen12g023320' => 'spe',
	'Sp3g24190' => 'spa',
	'Sp4g07270' => 'spa',
	'Sp4g07530' => 'spa',
	'Sp4g07670' => 'spa',
	'Sp6g09360' => 'spa',
	'Sp7g04180' => 'spa',
	'Sp7g04980' => 'spa',
	'Sp7g08200' => 'spa',
	'Sp7g09660' => 'spa',
	'SpUn0081_0010' => 'spa',
	'THA.LOC104803417' => 'tha',
	'THA.LOC104817059' => 'tha',
	'Thecc.01G188700' => 'tca',
	'Thecc.05G106700' => 'tca',
	'Thecc.06G068800' => 'tca',
	'Thecc.07G189100' => 'tca',
	'Thecc.09G172800' => 'tca',
	'Thhalv10023044m.g' => 'esa',
	'Thhalv10023881m.g' => 'esa',
	'Thhalv10024067m.g' => 'esa'
)
$gf_id = 'HOM05D000691'
$gf_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$gf_types_configuration = array(
	'HOMFAM' => array(
		'order' => '1',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	),
	'ORTHOFAM' => array(
		'order' => '2',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	)
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$allow_async_use = true
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D000691'
)
$data_identifier = 'HOM05D000691'
$data_type = 'gf_id'
$species_gene_counts = array(
	'amhyb' => (int) 18,
	'aly' => (int) 1,
	'atr' => (int) 21,
	'acertr' => (int) 1,
	'cqu' => (int) 90,
	'bol' => (int) 1,
	'can' => (int) 7,
	'cil' => (int) 3,
	'cla' => (int) 15,
	'col' => (int) 1,
	'cpa' => (int) 2,
	'csa' => (int) 7,
	'camsi' => (int) 10,
	'din' => (int) 1,
	'dzi' => (int) 2,
	'bvu' => (int) 18,
	'fve' => (int) 22,
	'gra' => (int) 1,
	'han' => (int) 7,
	'hma' => (int) 9,
	'sun' => (int) 16,
	'lonja' => (int) 46,
	'mes' => (int) 8,
	'mbi' => (int) 2,
	'cme' => (int) 6,
	'oeu' => (int) 110,
	'stu' => (int) 45,
	'ptr' => (int) 1,
	'rch' => (int) 1,
	'sci' => (int) 1,
	'sgi' => (int) 31,
	'sas' => (int) 1,
	'shi' => (int) 89,
	'sly' => (int) 2,
	'spe' => (int) 211,
	'spa' => (int) 10,
	'tha' => (int) 2,
	'tca' => (int) 5,
	'esa' => (int) 3
)
$gf_gene_species = 'esa'
$gf_gene_id = 'Thhalv10024067m.g'
$species_info = array(
	'species' => 'mbi',
	'common_name' => 'Magnolia biondii',
	'tax_id' => '86725',
	'version' => 'v1.0'
)
$local_species = 'mbi'
$disabled = ''
$selected = ''
$num_hits = (int) 0
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Analysis/custom_tree_creation.ctp, line 27
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933

Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]
Code Context
        $disabled    = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";

        $selected    = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";

        $num_hits    = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D000691',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '827',
		'num_species' => '39'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'gf_genes' => array(
		'Ah.01g012340' => 'amhyb',
		'Ah.01g013530' => 'amhyb',
		'Ah.03g143080' => 'amhyb',
		'Ah.06g186750' => 'amhyb',
		'Ah.06g186800' => 'amhyb',
		'Ah.07g200050' => 'amhyb',
		'Ah.08g209110' => 'amhyb',
		'Ah.09g229600' => 'amhyb',
		'Ah.09g229610' => 'amhyb',
		'Ah.10g026490' => 'amhyb',
		'Ah.12g065350' => 'amhyb',
		'Ah.13g069310' => 'amhyb',
		'Ah.14g080130' => 'amhyb',
		'Ah.14g081130' => 'amhyb',
		'Ah.14g081140' => 'amhyb',
		'Ah.16g109160' => 'amhyb',
		'Ah.16g109170' => 'amhyb',
		'Ah.16g109370' => 'amhyb',
		'AL3G47720' => 'aly',
		'ATR0012G060' => 'atr',
		'ATR0026G029' => 'atr',
		'ATR0193G043' => 'atr',
		'ATR0561G076' => 'atr',
		'ATR0561G181' => 'atr',
		'ATR0568G014' => 'atr',
		'ATR0568G114' => 'atr',
		'ATR0620G039' => 'atr',
		'ATR0629G125' => 'atr',
		'ATR0661G583' => 'atr',
		'ATR0686G019' => 'atr',
		'ATR0693G232' => 'atr',
		'ATR0697G104' => 'atr',
		'ATR0789G146' => 'atr',
		'ATR0794G066' => 'atr',
		'ATR1127G127' => 'atr',
		'ATR1131G040' => 'atr',
		'ATR1134G004' => 'atr',
		'ATR1134G095' => 'atr',
		'ATR1152G110' => 'atr',
		'ATR1153G065' => 'atr',
		'Atru.chr3.2296' => 'acertr',
		'AUR62000692' => 'cqu',
		'AUR62001473' => 'cqu',
		'AUR62001812' => 'cqu',
		'AUR62002706' => 'cqu',
		'AUR62003904' => 'cqu',
		'AUR62003905' => 'cqu',
		'AUR62004840' => 'cqu',
		'AUR62005160' => 'cqu',
		'AUR62005604' => 'cqu',
		'AUR62005891' => 'cqu',
		'AUR62007290' => 'cqu',
		'AUR62007502' => 'cqu',
		'AUR62007923' => 'cqu',
		'AUR62009972' => 'cqu',
		'AUR62010488' => 'cqu',
		'AUR62010643' => 'cqu',
		'AUR62012637' => 'cqu',
		'AUR62013492' => 'cqu',
		'AUR62014239' => 'cqu',
		'AUR62014878' => 'cqu',
		'AUR62015857' => 'cqu',
		'AUR62016224' => 'cqu',
		'AUR62017430' => 'cqu',
		'AUR62017467' => 'cqu',
		'AUR62018234' => 'cqu',
		'AUR62019060' => 'cqu',
		'AUR62019607' => 'cqu',
		'AUR62019661' => 'cqu',
		'AUR62022775' => 'cqu',
		'AUR62023603' => 'cqu',
		'AUR62024563' => 'cqu',
		'AUR62026199' => 'cqu',
		'AUR62026905' => 'cqu',
		'AUR62028639' => 'cqu',
		'AUR62029168' => 'cqu',
		'AUR62029551' => 'cqu',
		'AUR62029860' => 'cqu',
		'AUR62030164' => 'cqu',
		'AUR62031208' => 'cqu',
		'AUR62031287' => 'cqu',
		'AUR62031817' => 'cqu',
		'AUR62032126' => 'cqu',
		'AUR62032358' => 'cqu',
		'AUR62032884' => 'cqu',
		'AUR62032892' => 'cqu',
		'AUR62033082' => 'cqu',
		'AUR62033100' => 'cqu',
		'AUR62033255' => 'cqu',
		'AUR62033698' => 'cqu',
		'AUR62033757' => 'cqu',
		'AUR62034760' => 'cqu',
		'AUR62034860' => 'cqu',
		'AUR62035179' => 'cqu',
		'AUR62035881' => 'cqu',
		'AUR62036824' => 'cqu',
		'AUR62036876' => 'cqu',
		'AUR62037319' => 'cqu',
		'AUR62037362' => 'cqu',
		'AUR62037541' => 'cqu',
		'AUR62037853' => 'cqu',
		'AUR62038299' => 'cqu',
		'AUR62038563' => 'cqu',
		'AUR62038564' => 'cqu',
		'AUR62038594' => 'cqu',
		'AUR62038792' => 'cqu',
		'AUR62038947' => 'cqu',
		'AUR62039030' => 'cqu',
		'AUR62039231' => 'cqu',
		'AUR62039452' => 'cqu',
		'AUR62040334' => 'cqu',
		'AUR62040869' => 'cqu',
		'AUR62040870' => 'cqu',
		'AUR62040916' => 'cqu',
		'AUR62041199' => 'cqu',
		'AUR62041334' => 'cqu',
		'AUR62041608' => 'cqu',
		'AUR62041609' => 'cqu',
		'AUR62041833' => 'cqu',
		'AUR62041834' => 'cqu',
		'AUR62042054' => 'cqu',
		'AUR62042134' => 'cqu',
		'AUR62042236' => 'cqu',
		'AUR62042281' => 'cqu',
		'AUR62042593' => 'cqu',
		'AUR62042653' => 'cqu',
		'AUR62043025' => 'cqu',
		'AUR62043026' => 'cqu',
		'AUR62043063' => 'cqu',
		'AUR62043091' => 'cqu',
		'AUR62043320' => 'cqu',
		'BolC5t32558H' => 'bol',
		'CAN.G1036.12' => 'can',
		'CAN.G1432.23' => 'can',
		'CAN.G159.19' => 'can',
		'CAN.G4114.1' => 'can',
		'CAN.G492.85' => 'can',
		'CAN.G500.95' => 'can',
		'CAN.G93.31' => 'can',
		'CiPaw.04G054900' => 'cil',
		'CiPaw.05G045400' => 'cil',
		'CiPaw.15G094100' => 'cil',
		'ClCG00G000700' => 'cla',
		'ClCG00G000780' => 'cla',
		'ClCG01G012280' => 'cla',
		'ClCG02G006140' => 'cla',
		'ClCG02G009810' => 'cla',
		'ClCG03G010170' => 'cla',
		'ClCG03G010260' => 'cla',
		'ClCG04G000770' => 'cla',
		'ClCG05G013980' => 'cla',
		'ClCG06G009110' => 'cla',
		'ClCG06G009120' => 'cla',
		'ClCG08G002190' => 'cla',
		'ClCG09G013830' => 'cla',
		'ClCG10G006760' => 'cla',
		'ClCG11G007310' => 'cla',
		'COL.COLO4_16141' => 'col',
		'Cpa.g.sc202.2' => 'cpa',
		'Cpa.g.sc76.18' => 'cpa',
		'CsaV3_1G031080' => 'csa',
		'CsaV3_4G011870' => 'csa',
		'CsaV3_4G014860' => 'csa',
		'CsaV3_4G021860' => 'csa',
		'CsaV3_6G009880' => 'csa',
		'CsaV3_7G021240' => 'csa',
		'CsaV3_UNG240600' => 'csa',
		'CSS0003516' => 'camsi',
		'CSS0013023' => 'camsi',
		'CSS0017680' => 'camsi',
		'CSS0018551' => 'camsi',
		'CSS0026792' => 'camsi',
		'CSS0028271' => 'camsi',
		'CSS0033603' => 'camsi',
		'CSS0040789' => 'camsi',
		'CSS0045068' => 'camsi',
		'CSS0045803' => 'camsi',
		'Dinv10528' => 'din',
		'Duzib116G0875' => 'dzi',
		'Duzib128G0055' => 'dzi',
		'EL10Ac1g02377' => 'bvu',
		'EL10Ac1g02378' => 'bvu',
		'EL10Ac2g03486' => 'bvu',
		'EL10Ac2g03487' => 'bvu',
		'EL10Ac3g05722' => 'bvu',
		'EL10Ac3g06186' => 'bvu',
		'EL10Ac5g11258' => 'bvu',
		'EL10Ac6g13831' => 'bvu',
		'EL10Ac6g14162' => 'bvu',
		'EL10Ac6g14316' => 'bvu',
		'EL10Ac6g14317' => 'bvu',
		'EL10Ac6g14588' => 'bvu',
		'EL10Ac7g16302' => 'bvu',
		'EL10Ac7g16543' => 'bvu',
		'EL10Ac8g18762' => 'bvu',
		'EL10Ac9g20847' => 'bvu',
		'EL10As7g23731' => 'bvu',
		'EL10As7g23732' => 'bvu',
		'FvH4_1g23713' => 'fve',
		'FvH4_2g00261' => 'fve',
		'FvH4_2g00262' => 'fve',
		'FvH4_2g15681' => 'fve',
		'FvH4_2g17851' => 'fve',
		'FvH4_3g10531' => 'fve',
		'FvH4_3g33536' => 'fve',
		'FvH4_4g03471' => 'fve',
		'FvH4_4g19351' => 'fve',
		'FvH4_4g34281' => 'fve',
		'FvH4_5g03811' => 'fve',
		'FvH4_5g03812' => 'fve',
		'FvH4_5g11822' => 'fve',
		'FvH4_5g31701' => 'fve',
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		'Sopen06g008160' => 'spe',
		'Sopen06g009120' => 'spe',
		'Sopen06g013550' => 'spe',
		'Sopen06g015340' => 'spe',
		'Sopen06g018330' => 'spe',
		'Sopen06g021630' => 'spe',
		'Sopen06g021650' => 'spe',
		'Sopen07g006730' => 'spe',
		'Sopen07g008690' => 'spe',
		'Sopen07g008700' => 'spe',
		'Sopen07g008720' => 'spe',
		'Sopen07g008870' => 'spe',
		'Sopen07g009400' => 'spe',
		'Sopen07g009410' => 'spe',
		'Sopen07g009470' => 'spe',
		'Sopen07g009540' => 'spe',
		'Sopen07g011060' => 'spe',
		'Sopen07g011110' => 'spe',
		'Sopen07g011820' => 'spe',
		'Sopen07g013260' => 'spe',
		'Sopen07g014740' => 'spe',
		'Sopen07g015160' => 'spe',
		'Sopen07g015230' => 'spe',
		'Sopen07g016240' => 'spe',
		'Sopen07g017200' => 'spe',
		'Sopen07g017810' => 'spe',
		'Sopen07g019030' => 'spe',
		'Sopen07g020430' => 'spe',
		'Sopen07g021010' => 'spe',
		'Sopen07g021340' => 'spe',
		'Sopen07g022950' => 'spe',
		'Sopen07g027860' => 'spe',
		'Sopen08g007820' => 'spe',
		'Sopen08g009330' => 'spe',
		'Sopen08g012310' => 'spe',
		'Sopen08g012560' => 'spe',
		'Sopen08g014040' => 'spe',
		'Sopen08g014650' => 'spe',
		'Sopen08g017020' => 'spe',
		'Sopen08g018300' => 'spe',
		'Sopen08g020530' => 'spe',
		'Sopen09g008590' => 'spe',
		'Sopen09g008780' => 'spe',
		'Sopen09g011540' => 'spe',
		'Sopen09g011920' => 'spe',
		'Sopen09g014170' => 'spe',
		'Sopen09g016520' => 'spe',
		'Sopen09g021030' => 'spe',
		'Sopen09g023110' => 'spe',
		'Sopen09g024750' => 'spe',
		'Sopen09g025230' => 'spe',
		'Sopen09g025600' => 'spe',
		'Sopen09g034660' => 'spe',
		'Sopen10g006700' => 'spe',
		'Sopen10g009130' => 'spe',
		'Sopen10g009140' => 'spe',
		'Sopen10g009560' => 'spe',
		'Sopen10g010340' => 'spe',
		'Sopen10g011040' => 'spe',
		'Sopen10g013650' => 'spe',
		'Sopen10g014130' => 'spe',
		'Sopen10g014140' => 'spe',
		'Sopen10g014760' => 'spe',
		'Sopen10g015080' => 'spe',
		'Sopen10g015830' => 'spe',
		'Sopen10g018240' => 'spe',
		'Sopen10g018300' => 'spe',
		'Sopen10g018350' => 'spe',
		'Sopen10g018460' => 'spe',
		'Sopen10g018670' => 'spe',
		'Sopen10g019040' => 'spe',
		'Sopen10g019330' => 'spe',
		'Sopen10g019340' => 'spe',
		'Sopen10g019360' => 'spe',
		'Sopen10g019370' => 'spe',
		'Sopen10g020620' => 'spe',
		'Sopen10g021550' => 'spe',
		'Sopen10g022160' => 'spe',
		'Sopen10g023540' => 'spe',
		'Sopen10g023570' => 'spe',
		'Sopen10g023580' => 'spe',
		'Sopen10g023600' => 'spe',
		'Sopen10g023620' => 'spe',
		'Sopen10g023650' => 'spe',
		'Sopen10g024800' => 'spe',
		'Sopen10g026170' => 'spe',
		'Sopen11g007790' => 'spe',
		'Sopen11g010170' => 'spe',
		'Sopen11g010580' => 'spe',
		'Sopen11g013420' => 'spe',
		'Sopen11g016330' => 'spe',
		'Sopen11g017010' => 'spe',
		'Sopen11g018110' => 'spe',
		'Sopen11g018960' => 'spe',
		'Sopen11g019000' => 'spe',
		'Sopen11g019970' => 'spe',
		'Sopen11g020340' => 'spe',
		'Sopen11g020970' => 'spe',
		'Sopen12g008510' => 'spe',
		'Sopen12g008910' => 'spe',
		'Sopen12g009010' => 'spe',
		'Sopen12g009120' => 'spe',
		'Sopen12g009340' => 'spe',
		'Sopen12g009580' => 'spe',
		'Sopen12g010190' => 'spe',
		'Sopen12g010320' => 'spe',
		'Sopen12g010370' => 'spe',
		'Sopen12g012140' => 'spe',
		'Sopen12g012700' => 'spe',
		'Sopen12g013490' => 'spe',
		'Sopen12g014290' => 'spe',
		'Sopen12g015060' => 'spe',
		'Sopen12g015610' => 'spe',
		'Sopen12g018380' => 'spe',
		'Sopen12g019150' => 'spe',
		'Sopen12g020560' => 'spe',
		'Sopen12g023320' => 'spe',
		'Sp3g24190' => 'spa',
		'Sp4g07270' => 'spa',
		'Sp4g07530' => 'spa',
		'Sp4g07670' => 'spa',
		'Sp6g09360' => 'spa',
		'Sp7g04180' => 'spa',
		'Sp7g04980' => 'spa',
		'Sp7g08200' => 'spa',
		'Sp7g09660' => 'spa',
		'SpUn0081_0010' => 'spa',
		'THA.LOC104803417' => 'tha',
		'THA.LOC104817059' => 'tha',
		'Thecc.01G188700' => 'tca',
		'Thecc.05G106700' => 'tca',
		'Thecc.06G068800' => 'tca',
		'Thecc.07G189100' => 'tca',
		'Thecc.09G172800' => 'tca',
		'Thhalv10023044m.g' => 'esa',
		'Thhalv10023881m.g' => 'esa',
		'Thhalv10024067m.g' => 'esa'
	),
	'gf_id' => 'HOM05D000691',
	'gf_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'gf_types_configuration' => array(
		'HOMFAM' => array(
			'order' => '1',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		),
		'ORTHOFAM' => array(
			'order' => '2',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		)
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'allow_async_use' => true,
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D000691'
	),
	'data_identifier' => 'HOM05D000691',
	'data_type' => 'gf_id'
)
$sidebar_info = array(
	'gf_id' => 'HOM05D000691',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '827',
	'num_species' => '39'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$gf_genes = array(
	'Ah.01g012340' => 'amhyb',
	'Ah.01g013530' => 'amhyb',
	'Ah.03g143080' => 'amhyb',
	'Ah.06g186750' => 'amhyb',
	'Ah.06g186800' => 'amhyb',
	'Ah.07g200050' => 'amhyb',
	'Ah.08g209110' => 'amhyb',
	'Ah.09g229600' => 'amhyb',
	'Ah.09g229610' => 'amhyb',
	'Ah.10g026490' => 'amhyb',
	'Ah.12g065350' => 'amhyb',
	'Ah.13g069310' => 'amhyb',
	'Ah.14g080130' => 'amhyb',
	'Ah.14g081130' => 'amhyb',
	'Ah.14g081140' => 'amhyb',
	'Ah.16g109160' => 'amhyb',
	'Ah.16g109170' => 'amhyb',
	'Ah.16g109370' => 'amhyb',
	'AL3G47720' => 'aly',
	'ATR0012G060' => 'atr',
	'ATR0026G029' => 'atr',
	'ATR0193G043' => 'atr',
	'ATR0561G076' => 'atr',
	'ATR0561G181' => 'atr',
	'ATR0568G014' => 'atr',
	'ATR0568G114' => 'atr',
	'ATR0620G039' => 'atr',
	'ATR0629G125' => 'atr',
	'ATR0661G583' => 'atr',
	'ATR0686G019' => 'atr',
	'ATR0693G232' => 'atr',
	'ATR0697G104' => 'atr',
	'ATR0789G146' => 'atr',
	'ATR0794G066' => 'atr',
	'ATR1127G127' => 'atr',
	'ATR1131G040' => 'atr',
	'ATR1134G004' => 'atr',
	'ATR1134G095' => 'atr',
	'ATR1152G110' => 'atr',
	'ATR1153G065' => 'atr',
	'Atru.chr3.2296' => 'acertr',
	'AUR62000692' => 'cqu',
	'AUR62001473' => 'cqu',
	'AUR62001812' => 'cqu',
	'AUR62002706' => 'cqu',
	'AUR62003904' => 'cqu',
	'AUR62003905' => 'cqu',
	'AUR62004840' => 'cqu',
	'AUR62005160' => 'cqu',
	'AUR62005604' => 'cqu',
	'AUR62005891' => 'cqu',
	'AUR62007290' => 'cqu',
	'AUR62007502' => 'cqu',
	'AUR62007923' => 'cqu',
	'AUR62009972' => 'cqu',
	'AUR62010488' => 'cqu',
	'AUR62010643' => 'cqu',
	'AUR62012637' => 'cqu',
	'AUR62013492' => 'cqu',
	'AUR62014239' => 'cqu',
	'AUR62014878' => 'cqu',
	'AUR62015857' => 'cqu',
	'AUR62016224' => 'cqu',
	'AUR62017430' => 'cqu',
	'AUR62017467' => 'cqu',
	'AUR62018234' => 'cqu',
	'AUR62019060' => 'cqu',
	'AUR62019607' => 'cqu',
	'AUR62019661' => 'cqu',
	'AUR62022775' => 'cqu',
	'AUR62023603' => 'cqu',
	'AUR62024563' => 'cqu',
	'AUR62026199' => 'cqu',
	'AUR62026905' => 'cqu',
	'AUR62028639' => 'cqu',
	'AUR62029168' => 'cqu',
	'AUR62029551' => 'cqu',
	'AUR62029860' => 'cqu',
	'AUR62030164' => 'cqu',
	'AUR62031208' => 'cqu',
	'AUR62031287' => 'cqu',
	'AUR62031817' => 'cqu',
	'AUR62032126' => 'cqu',
	'AUR62032358' => 'cqu',
	'AUR62032884' => 'cqu',
	'AUR62032892' => 'cqu',
	'AUR62033082' => 'cqu',
	'AUR62033100' => 'cqu',
	'AUR62033255' => 'cqu',
	'AUR62033698' => 'cqu',
	'AUR62033757' => 'cqu',
	'AUR62034760' => 'cqu',
	'AUR62034860' => 'cqu',
	'AUR62035179' => 'cqu',
	'AUR62035881' => 'cqu',
	'AUR62036824' => 'cqu',
	'AUR62036876' => 'cqu',
	'AUR62037319' => 'cqu',
	'AUR62037362' => 'cqu',
	'AUR62037541' => 'cqu',
	'AUR62037853' => 'cqu',
	'AUR62038299' => 'cqu',
	'AUR62038563' => 'cqu',
	'AUR62038564' => 'cqu',
	'AUR62038594' => 'cqu',
	'AUR62038792' => 'cqu',
	'AUR62038947' => 'cqu',
	'AUR62039030' => 'cqu',
	'AUR62039231' => 'cqu',
	'AUR62039452' => 'cqu',
	'AUR62040334' => 'cqu',
	'AUR62040869' => 'cqu',
	'AUR62040870' => 'cqu',
	'AUR62040916' => 'cqu',
	'AUR62041199' => 'cqu',
	'AUR62041334' => 'cqu',
	'AUR62041608' => 'cqu',
	'AUR62041609' => 'cqu',
	'AUR62041833' => 'cqu',
	'AUR62041834' => 'cqu',
	'AUR62042054' => 'cqu',
	'AUR62042134' => 'cqu',
	'AUR62042236' => 'cqu',
	'AUR62042281' => 'cqu',
	'AUR62042593' => 'cqu',
	'AUR62042653' => 'cqu',
	'AUR62043025' => 'cqu',
	'AUR62043026' => 'cqu',
	'AUR62043063' => 'cqu',
	'AUR62043091' => 'cqu',
	'AUR62043320' => 'cqu',
	'BolC5t32558H' => 'bol',
	'CAN.G1036.12' => 'can',
	'CAN.G1432.23' => 'can',
	'CAN.G159.19' => 'can',
	'CAN.G4114.1' => 'can',
	'CAN.G492.85' => 'can',
	'CAN.G500.95' => 'can',
	'CAN.G93.31' => 'can',
	'CiPaw.04G054900' => 'cil',
	'CiPaw.05G045400' => 'cil',
	'CiPaw.15G094100' => 'cil',
	'ClCG00G000700' => 'cla',
	'ClCG00G000780' => 'cla',
	'ClCG01G012280' => 'cla',
	'ClCG02G006140' => 'cla',
	'ClCG02G009810' => 'cla',
	'ClCG03G010170' => 'cla',
	'ClCG03G010260' => 'cla',
	'ClCG04G000770' => 'cla',
	'ClCG05G013980' => 'cla',
	'ClCG06G009110' => 'cla',
	'ClCG06G009120' => 'cla',
	'ClCG08G002190' => 'cla',
	'ClCG09G013830' => 'cla',
	'ClCG10G006760' => 'cla',
	'ClCG11G007310' => 'cla',
	'COL.COLO4_16141' => 'col',
	'Cpa.g.sc202.2' => 'cpa',
	'Cpa.g.sc76.18' => 'cpa',
	'CsaV3_1G031080' => 'csa',
	'CsaV3_4G011870' => 'csa',
	'CsaV3_4G014860' => 'csa',
	'CsaV3_4G021860' => 'csa',
	'CsaV3_6G009880' => 'csa',
	'CsaV3_7G021240' => 'csa',
	'CsaV3_UNG240600' => 'csa',
	'CSS0003516' => 'camsi',
	'CSS0013023' => 'camsi',
	'CSS0017680' => 'camsi',
	'CSS0018551' => 'camsi',
	'CSS0026792' => 'camsi',
	'CSS0028271' => 'camsi',
	'CSS0033603' => 'camsi',
	'CSS0040789' => 'camsi',
	'CSS0045068' => 'camsi',
	'CSS0045803' => 'camsi',
	'Dinv10528' => 'din',
	'Duzib116G0875' => 'dzi',
	'Duzib128G0055' => 'dzi',
	'EL10Ac1g02377' => 'bvu',
	'EL10Ac1g02378' => 'bvu',
	'EL10Ac2g03486' => 'bvu',
	'EL10Ac2g03487' => 'bvu',
	'EL10Ac3g05722' => 'bvu',
	'EL10Ac3g06186' => 'bvu',
	'EL10Ac5g11258' => 'bvu',
	'EL10Ac6g13831' => 'bvu',
	'EL10Ac6g14162' => 'bvu',
	'EL10Ac6g14316' => 'bvu',
	'EL10Ac6g14317' => 'bvu',
	'EL10Ac6g14588' => 'bvu',
	'EL10Ac7g16302' => 'bvu',
	'EL10Ac7g16543' => 'bvu',
	'EL10Ac8g18762' => 'bvu',
	'EL10Ac9g20847' => 'bvu',
	'EL10As7g23731' => 'bvu',
	'EL10As7g23732' => 'bvu',
	'FvH4_1g23713' => 'fve',
	'FvH4_2g00261' => 'fve',
	'FvH4_2g00262' => 'fve',
	'FvH4_2g15681' => 'fve',
	'FvH4_2g17851' => 'fve',
	'FvH4_3g10531' => 'fve',
	'FvH4_3g33536' => 'fve',
	'FvH4_4g03471' => 'fve',
	'FvH4_4g19351' => 'fve',
	'FvH4_4g34281' => 'fve',
	'FvH4_5g03811' => 'fve',
	'FvH4_5g03812' => 'fve',
	'FvH4_5g11822' => 'fve',
	'FvH4_5g31701' => 'fve',
	'FvH4_6g12161' => 'fve',
	'FvH4_6g15222' => 'fve',
	'FvH4_6g15223' => 'fve',
	'FvH4_6g19301' => 'fve',
	'FvH4_6g33011' => 'fve',
	'FvH4_6g50161' => 'fve',
	'FvH4_7g04123' => 'fve',
	'FvH4_c7g00010' => 'fve',
	'Gorai.012G165300' => 'gra',
	'HanXRQChr00c0452g0574871' => 'han',
	'HanXRQChr01g0029471' => 'han',
	'HanXRQChr05g0133501' => 'han',
	'HanXRQChr10g0280141' => 'han',
	'HanXRQChr10g0280631' => 'han',
	'HanXRQChr13g0409991' => 'han',
	'HanXRQChr15g0468361' => 'han',
	'Hma1.2p1_0021F.1_g014270' => 'hma',
	'Hma1.2p1_0026F.1_g016730' => 'hma',
	'Hma1.2p1_0177F.1_g077930' => 'hma',
	'Hma1.2p1_0370F.1_g137540' => 'hma',
	'Hma1.2p1_0637F.1_g193600' => 'hma',
	'Hma1.2p1_1045F.1_g251360' => 'hma',
	'Hma1.2p1_1168F.1_g263120' => 'hma',
	'Hma1.2p1_1640F.1_g295040' => 'hma',
	'Hma1.2p1_2467F.1_g322660' => 'hma',
	'Hund01785' => 'sun',
	'Hund04739' => 'sun',
	'Hund07717' => 'sun',
	'Hund08060' => 'sun',
	'Hund08734' => 'sun',
	'Hund10876' => 'sun',
	'Hund14991' => 'sun',
	'Hund15051' => 'sun',
	'Hund15082' => 'sun',
	'Hund17998' => 'sun',
	'Hund18526' => 'sun',
	'Hund19828' => 'sun',
	'Hund23384' => 'sun',
	'Hund26399' => 'sun',
	'Hund28766' => 'sun',
	'Hund28768' => 'sun',
	'Lj1A487G33' => 'lonja',
	'Lj1A487G34' => 'lonja',
	'Lj1A489G15' => 'lonja',
	'Lj1C1113T3' => 'lonja',
	'Lj1C3T4' => 'lonja',
	'Lj1C763G4' => 'lonja',
	'Lj1P195T27' => 'lonja',
	'Lj1P573T13' => 'lonja',
	'Lj1P895T45' => 'lonja',
	'Lj1P995G28' => 'lonja',
	'Lj2A1125G46' => 'lonja',
	'Lj2C116T7' => 'lonja',
	'Lj2P295T30' => 'lonja',
	'Lj2P476T23' => 'lonja',
	'Lj2P603T27' => 'lonja',
	'Lj2P609T17' => 'lonja',
	'Lj2P727T24' => 'lonja',
	'Lj3C273T2' => 'lonja',
	'Lj3C644G3' => 'lonja',
	'Lj3C644G4' => 'lonja',
	'Lj3P463T4' => 'lonja',
	'Lj3P545T31' => 'lonja',
	'Lj3P820T55' => 'lonja',
	'Lj4C260T12' => 'lonja',
	'Lj4C714G8' => 'lonja',
	'Lj4P131T14' => 'lonja',
	'Lj4P131T15' => 'lonja',
	'Lj5C102G24' => 'lonja',
	'Lj5P491T3' => 'lonja',
	'Lj5P564T12' => 'lonja',
	'Lj5P786T11' => 'lonja',
	'Lj6C97T3' => 'lonja',
	'Lj8P523T19' => 'lonja',
	'Lj9A24G30' => 'lonja',
	'Lj9A424G33' => 'lonja',
	'Lj9C219G10' => 'lonja',
	'Lj9P219T12' => 'lonja',
	'Lj9P705T22' => 'lonja',
	'Lju114C4T7' => 'lonja',
	'Lju1220C5G5' => 'lonja',
	'Lju2092C1G1' => 'lonja',
	'Lju2092C1T0' => 'lonja',
	'Lju225C6G6' => 'lonja',
	'Lju427C2T0' => 'lonja',
	'Lju50C9T4' => 'lonja',
	'Lju926C12T2' => 'lonja',
	'Manes.06G126602' => 'mes',
	'Manes.13G002614' => 'mes',
	'Manes.15G192966' => 'mes',
	'Manes.17G001483' => 'mes',
	'Manes.17G022547' => 'mes',
	'Manes.18G042825' => 'mes',
	'Manes.S026816' => 'mes',
	'Manes.S027416' => 'mes',
	'MBI02_g15234_MAGBIO' => 'mbi',
	'MBI16_g35584_MAGBIO' => 'mbi',
	'MELO3C008948.2' => 'cme',
	'MELO3C010395.2' => 'cme',
	'MELO3C010396.2' => 'cme',
	'MELO3C015759.2' => 'cme',
	'MELO3C022607.2' => 'cme',
	'MELO3C028897.2' => 'cme',
	'Oeu000188.1' => 'oeu',
	'Oeu002226.1' => 'oeu',
	'Oeu003087.1' => 'oeu',
	'Oeu003392.1' => 'oeu',
	'Oeu003523.1' => 'oeu',
	'Oeu003524.1' => 'oeu',
	'Oeu003528.1' => 'oeu',
	'Oeu003547.2' => 'oeu',
	'Oeu004677.1' => 'oeu',
	'Oeu005362.1' => 'oeu',
	'Oeu005833.1' => 'oeu',
	'Oeu005834.1' => 'oeu',
	'Oeu006751.1' => 'oeu',
	'Oeu007084.1' => 'oeu',
	'Oeu007264.1' => 'oeu',
	'Oeu008153.1' => 'oeu',
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	'Oeu008229.1' => 'oeu',
	'Oeu009580.1' => 'oeu',
	'Oeu010110.1' => 'oeu',
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	'Oeu012157.1' => 'oeu',
	'Oeu013775.1' => 'oeu',
	'Oeu013806.1' => 'oeu',
	'Oeu016457.1' => 'oeu',
	'Oeu016803.1' => 'oeu',
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	'Oeu020246.2' => 'oeu',
	'Oeu020990.1' => 'oeu',
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	'Oeu023578.1' => 'oeu',
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	'Oeu025087.1' => 'oeu',
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	'Oeu025412.1' => 'oeu',
	'Oeu025520.1' => 'oeu',
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	'Oeu029748.1' => 'oeu',
	'Oeu030224.1' => 'oeu',
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	'Oeu030253.1' => 'oeu',
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	'Oeu030415.1' => 'oeu',
	'Oeu030472.1' => 'oeu',
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	'Oeu031697.1' => 'oeu',
	'Oeu032030.1' => 'oeu',
	'Oeu032031.1' => 'oeu',
	'Oeu032075.1' => 'oeu',
	'Oeu032737.1' => 'oeu',
	'Oeu033407.1' => 'oeu',
	'Oeu033485.1' => 'oeu',
	'Oeu034465.1' => 'oeu',
	'Oeu034951.1' => 'oeu',
	'Oeu036281.1' => 'oeu',
	'Oeu036931.1' => 'oeu',
	'Oeu036932.1' => 'oeu',
	'Oeu037340.1' => 'oeu',
	'Oeu037611.1' => 'oeu',
	'Oeu039205.1' => 'oeu',
	'Oeu039325.1' => 'oeu',
	'Oeu040999.1' => 'oeu',
	'Oeu041244.1' => 'oeu',
	'Oeu041682.1' => 'oeu',
	'Oeu041863.1' => 'oeu',
	'Oeu042345.1' => 'oeu',
	'Oeu042346.1' => 'oeu',
	'Oeu042671.1' => 'oeu',
	'Oeu043273.1' => 'oeu',
	'Oeu043573.1' => 'oeu',
	'Oeu044071.1' => 'oeu',
	'Oeu046813.1' => 'oeu',
	'Oeu048160.1' => 'oeu',
	'Oeu048162.1' => 'oeu',
	'Oeu048282.1' => 'oeu',
	'Oeu048297.1' => 'oeu',
	'Oeu048360.1' => 'oeu',
	'Oeu048565.1' => 'oeu',
	'Oeu049268.1' => 'oeu',
	'Oeu049465.1' => 'oeu',
	'Oeu049978.1' => 'oeu',
	'Oeu050628.1' => 'oeu',
	'Oeu050727.1' => 'oeu',
	'Oeu052065.1' => 'oeu',
	'Oeu052582.1' => 'oeu',
	'Oeu053090.1' => 'oeu',
	'Oeu053644.1' => 'oeu',
	'Oeu053713.1' => 'oeu',
	'Oeu055027.1' => 'oeu',
	'Oeu057741.1' => 'oeu',
	'Oeu058973.1' => 'oeu',
	'Oeu060366.1' => 'oeu',
	'Oeu061428.1' => 'oeu',
	'Oeu062087.1' => 'oeu',
	'Oeu062537.1' => 'oeu',
	'Oeu062538.1' => 'oeu',
	'Oeu064387.1' => 'oeu',
	'PGSC0003DMG400002344' => 'stu',
	'PGSC0003DMG400004046' => 'stu',
	'PGSC0003DMG400006418' => 'stu',
	'PGSC0003DMG400008410' => 'stu',
	'PGSC0003DMG400008620' => 'stu',
	'PGSC0003DMG400009504' => 'stu',
	'PGSC0003DMG400009845' => 'stu',
	'PGSC0003DMG400011177' => 'stu',
	'PGSC0003DMG400011629' => 'stu',
	'PGSC0003DMG400013586' => 'stu',
	'PGSC0003DMG400013599' => 'stu',
	'PGSC0003DMG400014534' => 'stu',
	'PGSC0003DMG400016055' => 'stu',
	'PGSC0003DMG400016736' => 'stu',
	'PGSC0003DMG400016866' => 'stu',
	'PGSC0003DMG400017701' => 'stu',
	'PGSC0003DMG400018448' => 'stu',
	'PGSC0003DMG400020751' => 'stu',
	'PGSC0003DMG400021088' => 'stu',
	'PGSC0003DMG400021387' => 'stu',
	'PGSC0003DMG400021640' => 'stu',
	'PGSC0003DMG400021704' => 'stu',
	'PGSC0003DMG400022155' => 'stu',
	'PGSC0003DMG400023544' => 'stu',
	'PGSC0003DMG400023564' => 'stu',
	'PGSC0003DMG400028558' => 'stu',
	'PGSC0003DMG400028618' => 'stu',
	'PGSC0003DMG400029149' => 'stu',
	'PGSC0003DMG400029979' => 'stu',
	'PGSC0003DMG400030069' => 'stu',
	'PGSC0003DMG400031272' => 'stu',
	'PGSC0003DMG400034656' => 'stu',
	'PGSC0003DMG400035151' => 'stu',
	'PGSC0003DMG400035741' => 'stu',
	'PGSC0003DMG400036100' => 'stu',
	'PGSC0003DMG400037683' => 'stu',
	'PGSC0003DMG400038046' => 'stu',
	'PGSC0003DMG400040121' => 'stu',
	'PGSC0003DMG400042113' => 'stu',
	'PGSC0003DMG400042218' => 'stu',
	'PGSC0003DMG400044188' => 'stu',
	'PGSC0003DMG400044323' => 'stu',
	'PGSC0003DMG400045014' => 'stu',
	'PGSC0003DMG400045177' => 'stu',
	'PGSC0003DMG400047199' => 'stu',
	'Potri.017G071366' => 'ptr',
	'RcHm_v2.0_Chr2g0137481' => 'rch',
	'Sc20g0003180' => 'sci',
	'SEGI_00305' => 'sgi',
	'SEGI_02246' => 'sgi',
	'SEGI_03696' => 'sgi',
	'SEGI_05490' => 'sgi',
	'SEGI_05682' => 'sgi',
	'SEGI_05900' => 'sgi',
	'SEGI_06517' => 'sgi',
	'SEGI_12587' => 'sgi',
	'SEGI_13129' => 'sgi',
	'SEGI_16935' => 'sgi',
	'SEGI_18008' => 'sgi',
	'SEGI_18224' => 'sgi',
	'SEGI_20188' => 'sgi',
	'SEGI_20772' => 'sgi',
	'SEGI_20842' => 'sgi',
	'SEGI_22270' => 'sgi',
	'SEGI_22705' => 'sgi',
	'SEGI_23638' => 'sgi',
	'SEGI_23928' => 'sgi',
	'SEGI_24790' => 'sgi',
	'SEGI_28421' => 'sgi',
	'SEGI_28832' => 'sgi',
	'SEGI_29884' => 'sgi',
	'SEGI_30829' => 'sgi',
	'SEGI_35046' => 'sgi',
	'SEGI_35582' => 'sgi',
	'SEGI_37882' => 'sgi',
	'SEGI_39680' => 'sgi',
	'SEGI_40069' => 'sgi',
	'SEGI_40087' => 'sgi',
	'SEGI_41606' => 'sgi',
	'SGA_v2.0_scaffold50G18578' => 'sas',
	'SHI00293' => 'shi',
	'SHI00389' => 'shi',
	'SHI00445' => 'shi',
	'SHI01000' => 'shi',
	'SHI01503' => 'shi',
	'SHI01718' => 'shi',
	'SHI03454' => 'shi',
	'SHI03493' => 'shi',
	'SHI03494' => 'shi',
	'SHI03628' => 'shi',
	'SHI04457' => 'shi',
	'SHI04691' => 'shi',
	'SHI04829' => 'shi',
	'SHI05225' => 'shi',
	'SHI06326' => 'shi',
	'SHI06505' => 'shi',
	'SHI06770' => 'shi',
	'SHI07388' => 'shi',
	'SHI07582' => 'shi',
	'SHI07583' => 'shi',
	'SHI08271' => 'shi',
	'SHI10619' => 'shi',
	'SHI10892' => 'shi',
	'SHI10910' => 'shi',
	'SHI10911' => 'shi',
	'SHI14326' => 'shi',
	'SHI14681' => 'shi',
	'SHI15017' => 'shi',
	'SHI15096' => 'shi',
	'SHI15120' => 'shi',
	'SHI15274' => 'shi',
	'SHI16232' => 'shi',
	'SHI16811' => 'shi',
	'SHI17386' => 'shi',
	'SHI17926' => 'shi',
	'SHI18293' => 'shi',
	'SHI20489' => 'shi',
	'SHI20658' => 'shi',
	'SHI20663' => 'shi',
	'SHI21566' => 'shi',
	'SHI22547' => 'shi',
	'SHI22708' => 'shi',
	'SHI22709' => 'shi',
	'SHI22878' => 'shi',
	'SHI22879' => 'shi',
	'SHI23024' => 'shi',
	'SHI25053' => 'shi',
	'SHI25076' => 'shi',
	'SHI25116' => 'shi',
	'SHI25381' => 'shi',
	'SHI25535' => 'shi',
	'SHI25740' => 'shi',
	'SHI25991' => 'shi',
	'SHI26344' => 'shi',
	'SHI26345' => 'shi',
	'SHI27097' => 'shi',
	'SHI27140' => 'shi',
	'SHI27178' => 'shi',
	'SHI27207' => 'shi',
	'SHI27225' => 'shi',
	'SHI27734' => 'shi',
	'SHI27806' => 'shi',
	'SHI28576' => 'shi',
	'SHI29081' => 'shi',
	'SHI30038' => 'shi',
	'SHI30394' => 'shi',
	'SHI30652' => 'shi',
	'SHI32154' => 'shi',
	'SHI32205' => 'shi',
	'SHI32365' => 'shi',
	'SHI32439' => 'shi',
	'SHI32505' => 'shi',
	'SHI32626' => 'shi',
	'SHI32714' => 'shi',
	'SHI32715' => 'shi',
	'SHI32716' => 'shi',
	'SHI33118' => 'shi',
	'SHI33318' => 'shi',
	'SHI33373' => 'shi',
	'SHI33512' => 'shi',
	'SHI33625' => 'shi',
	'SHI34327' => 'shi',
	'SHI35604' => 'shi',
	'SHI36119' => 'shi',
	'SHI36120' => 'shi',
	'SHI44959' => 'shi',
	'SHI46406' => 'shi',
	'SHI48191' => 'shi',
	'SHI48192' => 'shi',
	'Solyc10g150111.1' => 'sly',
	'Solyc12g062340.2' => 'sly',
	'Sopen00g001750' => 'spe',
	'Sopen00g001820' => 'spe',
	'Sopen00g001830' => 'spe',
	'Sopen00g001890' => 'spe',
	'Sopen00g002240' => 'spe',
	'Sopen00g003950' => 'spe',
	'Sopen00g004130' => 'spe',
	'Sopen00g004810' => 'spe',
	'Sopen00g005120' => 'spe',
	'Sopen00g005190' => 'spe',
	'Sopen00g007000' => 'spe',
	'Sopen00g007210' => 'spe',
	'Sopen00g012840' => 'spe',
	'Sopen00g013060' => 'spe',
	'Sopen00g013610' => 'spe',
	'Sopen00g013630' => 'spe',
	'Sopen01g004610' => 'spe',
	'Sopen01g007660' => 'spe',
	'Sopen01g007750' => 'spe',
	'Sopen01g007760' => 'spe',
	'Sopen01g007770' => 'spe',
	'Sopen01g007860' => 'spe',
	'Sopen01g009130' => 'spe',
	'Sopen01g009820' => 'spe',
	'Sopen01g011240' => 'spe',
	'Sopen01g012740' => 'spe',
	'Sopen01g013840' => 'spe',
	'Sopen01g013850' => 'spe',
	'Sopen01g016140' => 'spe',
	'Sopen01g016150' => 'spe',
	'Sopen01g016830' => 'spe',
	'Sopen01g017260' => 'spe',
	'Sopen01g019000' => 'spe',
	'Sopen01g019690' => 'spe',
	'Sopen01g022160' => 'spe',
	'Sopen01g024000' => 'spe',
	'Sopen01g024670' => 'spe',
	'Sopen01g024770' => 'spe',
	'Sopen01g024900' => 'spe',
	'Sopen01g025130' => 'spe',
	'Sopen01g026370' => 'spe',
	'Sopen01g041640' => 'spe',
	'Sopen01g046930' => 'spe',
	'Sopen02g001360' => 'spe',
	'Sopen02g002010' => 'spe',
	'Sopen02g003600' => 'spe',
	'Sopen02g003730' => 'spe',
	'Sopen02g005430' => 'spe',
	'Sopen02g005510' => 'spe',
	'Sopen02g006840' => 'spe',
	'Sopen02g007390' => 'spe',
	'Sopen02g007420' => 'spe',
	'Sopen02g007540' => 'spe',
	'Sopen02g007920' => 'spe',
	'Sopen02g008960' => 'spe',
	'Sopen02g009450' => 'spe',
	'Sopen02g009460' => 'spe',
	'Sopen02g011320' => 'spe',
	'Sopen02g012680' => 'spe',
	'Sopen02g018090' => 'spe',
	'Sopen02g022140' => 'spe',
	'Sopen03g010330' => 'spe',
	'Sopen03g013130' => 'spe',
	'Sopen03g013180' => 'spe',
	'Sopen03g013230' => 'spe',
	'Sopen03g014110' => 'spe',
	'Sopen03g015260' => 'spe',
	'Sopen03g015790' => 'spe',
	'Sopen03g018360' => 'spe',
	'Sopen03g024470' => 'spe',
	'Sopen03g026800' => 'spe',
	'Sopen04g003180' => 'spe',
	'Sopen04g008260' => 'spe',
	'Sopen04g010320' => 'spe',
	'Sopen04g011020' => 'spe',
	'Sopen04g011200' => 'spe',
	'Sopen04g011280' => 'spe',
	'Sopen04g021910' => 'spe',
	'Sopen04g023870' => 'spe',
	'Sopen05g009880' => 'spe',
	'Sopen05g011580' => 'spe',
	'Sopen05g012230' => 'spe',
	'Sopen05g012500' => 'spe',
	'Sopen05g012560' => 'spe',
	'Sopen05g012570' => 'spe',
	'Sopen05g012760' => 'spe',
	'Sopen05g013710' => 'spe',
	'Sopen05g015050' => 'spe',
	'Sopen05g026090' => 'spe',
	'Sopen05g028020' => 'spe',
	'Sopen05g028610' => 'spe',
	'Sopen05g029300' => 'spe',
	'Sopen06g005520' => 'spe',
	'Sopen06g006750' => 'spe',
	'Sopen06g008160' => 'spe',
	'Sopen06g009120' => 'spe',
	'Sopen06g013550' => 'spe',
	'Sopen06g015340' => 'spe',
	'Sopen06g018330' => 'spe',
	'Sopen06g021630' => 'spe',
	'Sopen06g021650' => 'spe',
	'Sopen07g006730' => 'spe',
	'Sopen07g008690' => 'spe',
	'Sopen07g008700' => 'spe',
	'Sopen07g008720' => 'spe',
	'Sopen07g008870' => 'spe',
	'Sopen07g009400' => 'spe',
	'Sopen07g009410' => 'spe',
	'Sopen07g009470' => 'spe',
	'Sopen07g009540' => 'spe',
	'Sopen07g011060' => 'spe',
	'Sopen07g011110' => 'spe',
	'Sopen07g011820' => 'spe',
	'Sopen07g013260' => 'spe',
	'Sopen07g014740' => 'spe',
	'Sopen07g015160' => 'spe',
	'Sopen07g015230' => 'spe',
	'Sopen07g016240' => 'spe',
	'Sopen07g017200' => 'spe',
	'Sopen07g017810' => 'spe',
	'Sopen07g019030' => 'spe',
	'Sopen07g020430' => 'spe',
	'Sopen07g021010' => 'spe',
	'Sopen07g021340' => 'spe',
	'Sopen07g022950' => 'spe',
	'Sopen07g027860' => 'spe',
	'Sopen08g007820' => 'spe',
	'Sopen08g009330' => 'spe',
	'Sopen08g012310' => 'spe',
	'Sopen08g012560' => 'spe',
	'Sopen08g014040' => 'spe',
	'Sopen08g014650' => 'spe',
	'Sopen08g017020' => 'spe',
	'Sopen08g018300' => 'spe',
	'Sopen08g020530' => 'spe',
	'Sopen09g008590' => 'spe',
	'Sopen09g008780' => 'spe',
	'Sopen09g011540' => 'spe',
	'Sopen09g011920' => 'spe',
	'Sopen09g014170' => 'spe',
	'Sopen09g016520' => 'spe',
	'Sopen09g021030' => 'spe',
	'Sopen09g023110' => 'spe',
	'Sopen09g024750' => 'spe',
	'Sopen09g025230' => 'spe',
	'Sopen09g025600' => 'spe',
	'Sopen09g034660' => 'spe',
	'Sopen10g006700' => 'spe',
	'Sopen10g009130' => 'spe',
	'Sopen10g009140' => 'spe',
	'Sopen10g009560' => 'spe',
	'Sopen10g010340' => 'spe',
	'Sopen10g011040' => 'spe',
	'Sopen10g013650' => 'spe',
	'Sopen10g014130' => 'spe',
	'Sopen10g014140' => 'spe',
	'Sopen10g014760' => 'spe',
	'Sopen10g015080' => 'spe',
	'Sopen10g015830' => 'spe',
	'Sopen10g018240' => 'spe',
	'Sopen10g018300' => 'spe',
	'Sopen10g018350' => 'spe',
	'Sopen10g018460' => 'spe',
	'Sopen10g018670' => 'spe',
	'Sopen10g019040' => 'spe',
	'Sopen10g019330' => 'spe',
	'Sopen10g019340' => 'spe',
	'Sopen10g019360' => 'spe',
	'Sopen10g019370' => 'spe',
	'Sopen10g020620' => 'spe',
	'Sopen10g021550' => 'spe',
	'Sopen10g022160' => 'spe',
	'Sopen10g023540' => 'spe',
	'Sopen10g023570' => 'spe',
	'Sopen10g023580' => 'spe',
	'Sopen10g023600' => 'spe',
	'Sopen10g023620' => 'spe',
	'Sopen10g023650' => 'spe',
	'Sopen10g024800' => 'spe',
	'Sopen10g026170' => 'spe',
	'Sopen11g007790' => 'spe',
	'Sopen11g010170' => 'spe',
	'Sopen11g010580' => 'spe',
	'Sopen11g013420' => 'spe',
	'Sopen11g016330' => 'spe',
	'Sopen11g017010' => 'spe',
	'Sopen11g018110' => 'spe',
	'Sopen11g018960' => 'spe',
	'Sopen11g019000' => 'spe',
	'Sopen11g019970' => 'spe',
	'Sopen11g020340' => 'spe',
	'Sopen11g020970' => 'spe',
	'Sopen12g008510' => 'spe',
	'Sopen12g008910' => 'spe',
	'Sopen12g009010' => 'spe',
	'Sopen12g009120' => 'spe',
	'Sopen12g009340' => 'spe',
	'Sopen12g009580' => 'spe',
	'Sopen12g010190' => 'spe',
	'Sopen12g010320' => 'spe',
	'Sopen12g010370' => 'spe',
	'Sopen12g012140' => 'spe',
	'Sopen12g012700' => 'spe',
	'Sopen12g013490' => 'spe',
	'Sopen12g014290' => 'spe',
	'Sopen12g015060' => 'spe',
	'Sopen12g015610' => 'spe',
	'Sopen12g018380' => 'spe',
	'Sopen12g019150' => 'spe',
	'Sopen12g020560' => 'spe',
	'Sopen12g023320' => 'spe',
	'Sp3g24190' => 'spa',
	'Sp4g07270' => 'spa',
	'Sp4g07530' => 'spa',
	'Sp4g07670' => 'spa',
	'Sp6g09360' => 'spa',
	'Sp7g04180' => 'spa',
	'Sp7g04980' => 'spa',
	'Sp7g08200' => 'spa',
	'Sp7g09660' => 'spa',
	'SpUn0081_0010' => 'spa',
	'THA.LOC104803417' => 'tha',
	'THA.LOC104817059' => 'tha',
	'Thecc.01G188700' => 'tca',
	'Thecc.05G106700' => 'tca',
	'Thecc.06G068800' => 'tca',
	'Thecc.07G189100' => 'tca',
	'Thecc.09G172800' => 'tca',
	'Thhalv10023044m.g' => 'esa',
	'Thhalv10023881m.g' => 'esa',
	'Thhalv10024067m.g' => 'esa'
)
$gf_id = 'HOM05D000691'
$gf_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$gf_types_configuration = array(
	'HOMFAM' => array(
		'order' => '1',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	),
	'ORTHOFAM' => array(
		'order' => '2',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	)
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$allow_async_use = true
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D000691'
)
$data_identifier = 'HOM05D000691'
$data_type = 'gf_id'
$species_gene_counts = array(
	'amhyb' => (int) 18,
	'aly' => (int) 1,
	'atr' => (int) 21,
	'acertr' => (int) 1,
	'cqu' => (int) 90,
	'bol' => (int) 1,
	'can' => (int) 7,
	'cil' => (int) 3,
	'cla' => (int) 15,
	'col' => (int) 1,
	'cpa' => (int) 2,
	'csa' => (int) 7,
	'camsi' => (int) 10,
	'din' => (int) 1,
	'dzi' => (int) 2,
	'bvu' => (int) 18,
	'fve' => (int) 22,
	'gra' => (int) 1,
	'han' => (int) 7,
	'hma' => (int) 9,
	'sun' => (int) 16,
	'lonja' => (int) 46,
	'mes' => (int) 8,
	'mbi' => (int) 2,
	'cme' => (int) 6,
	'oeu' => (int) 110,
	'stu' => (int) 45,
	'ptr' => (int) 1,
	'rch' => (int) 1,
	'sci' => (int) 1,
	'sgi' => (int) 31,
	'sas' => (int) 1,
	'shi' => (int) 89,
	'sly' => (int) 2,
	'spe' => (int) 211,
	'spa' => (int) 10,
	'tha' => (int) 2,
	'tca' => (int) 5,
	'esa' => (int) 3
)
$gf_gene_species = 'esa'
$gf_gene_id = 'Thhalv10024067m.g'
$species_info = array(
	'species' => 'mes',
	'common_name' => 'Manihot esculenta',
	'tax_id' => '3983',
	'version' => 'v8.1'
)
$local_species = 'mes'
$disabled = ''
$selected = ''
$num_hits = (int) 0
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Analysis/custom_tree_creation.ctp, line 27
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933

Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]
Code Context
        $disabled    = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";

        $selected    = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";

        $num_hits    = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D000691',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '827',
		'num_species' => '39'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'gf_genes' => array(
		'Ah.01g012340' => 'amhyb',
		'Ah.01g013530' => 'amhyb',
		'Ah.03g143080' => 'amhyb',
		'Ah.06g186750' => 'amhyb',
		'Ah.06g186800' => 'amhyb',
		'Ah.07g200050' => 'amhyb',
		'Ah.08g209110' => 'amhyb',
		'Ah.09g229600' => 'amhyb',
		'Ah.09g229610' => 'amhyb',
		'Ah.10g026490' => 'amhyb',
		'Ah.12g065350' => 'amhyb',
		'Ah.13g069310' => 'amhyb',
		'Ah.14g080130' => 'amhyb',
		'Ah.14g081130' => 'amhyb',
		'Ah.14g081140' => 'amhyb',
		'Ah.16g109160' => 'amhyb',
		'Ah.16g109170' => 'amhyb',
		'Ah.16g109370' => 'amhyb',
		'AL3G47720' => 'aly',
		'ATR0012G060' => 'atr',
		'ATR0026G029' => 'atr',
		'ATR0193G043' => 'atr',
		'ATR0561G076' => 'atr',
		'ATR0561G181' => 'atr',
		'ATR0568G014' => 'atr',
		'ATR0568G114' => 'atr',
		'ATR0620G039' => 'atr',
		'ATR0629G125' => 'atr',
		'ATR0661G583' => 'atr',
		'ATR0686G019' => 'atr',
		'ATR0693G232' => 'atr',
		'ATR0697G104' => 'atr',
		'ATR0789G146' => 'atr',
		'ATR0794G066' => 'atr',
		'ATR1127G127' => 'atr',
		'ATR1131G040' => 'atr',
		'ATR1134G004' => 'atr',
		'ATR1134G095' => 'atr',
		'ATR1152G110' => 'atr',
		'ATR1153G065' => 'atr',
		'Atru.chr3.2296' => 'acertr',
		'AUR62000692' => 'cqu',
		'AUR62001473' => 'cqu',
		'AUR62001812' => 'cqu',
		'AUR62002706' => 'cqu',
		'AUR62003904' => 'cqu',
		'AUR62003905' => 'cqu',
		'AUR62004840' => 'cqu',
		'AUR62005160' => 'cqu',
		'AUR62005604' => 'cqu',
		'AUR62005891' => 'cqu',
		'AUR62007290' => 'cqu',
		'AUR62007502' => 'cqu',
		'AUR62007923' => 'cqu',
		'AUR62009972' => 'cqu',
		'AUR62010488' => 'cqu',
		'AUR62010643' => 'cqu',
		'AUR62012637' => 'cqu',
		'AUR62013492' => 'cqu',
		'AUR62014239' => 'cqu',
		'AUR62014878' => 'cqu',
		'AUR62015857' => 'cqu',
		'AUR62016224' => 'cqu',
		'AUR62017430' => 'cqu',
		'AUR62017467' => 'cqu',
		'AUR62018234' => 'cqu',
		'AUR62019060' => 'cqu',
		'AUR62019607' => 'cqu',
		'AUR62019661' => 'cqu',
		'AUR62022775' => 'cqu',
		'AUR62023603' => 'cqu',
		'AUR62024563' => 'cqu',
		'AUR62026199' => 'cqu',
		'AUR62026905' => 'cqu',
		'AUR62028639' => 'cqu',
		'AUR62029168' => 'cqu',
		'AUR62029551' => 'cqu',
		'AUR62029860' => 'cqu',
		'AUR62030164' => 'cqu',
		'AUR62031208' => 'cqu',
		'AUR62031287' => 'cqu',
		'AUR62031817' => 'cqu',
		'AUR62032126' => 'cqu',
		'AUR62032358' => 'cqu',
		'AUR62032884' => 'cqu',
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		'AUR62033082' => 'cqu',
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		'AUR62038792' => 'cqu',
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		'AUR62041199' => 'cqu',
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		'AUR62042236' => 'cqu',
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		'AUR62043025' => 'cqu',
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		'AUR62043091' => 'cqu',
		'AUR62043320' => 'cqu',
		'BolC5t32558H' => 'bol',
		'CAN.G1036.12' => 'can',
		'CAN.G1432.23' => 'can',
		'CAN.G159.19' => 'can',
		'CAN.G4114.1' => 'can',
		'CAN.G492.85' => 'can',
		'CAN.G500.95' => 'can',
		'CAN.G93.31' => 'can',
		'CiPaw.04G054900' => 'cil',
		'CiPaw.05G045400' => 'cil',
		'CiPaw.15G094100' => 'cil',
		'ClCG00G000700' => 'cla',
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		'ClCG01G012280' => 'cla',
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		'ClCG03G010170' => 'cla',
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		'ClCG04G000770' => 'cla',
		'ClCG05G013980' => 'cla',
		'ClCG06G009110' => 'cla',
		'ClCG06G009120' => 'cla',
		'ClCG08G002190' => 'cla',
		'ClCG09G013830' => 'cla',
		'ClCG10G006760' => 'cla',
		'ClCG11G007310' => 'cla',
		'COL.COLO4_16141' => 'col',
		'Cpa.g.sc202.2' => 'cpa',
		'Cpa.g.sc76.18' => 'cpa',
		'CsaV3_1G031080' => 'csa',
		'CsaV3_4G011870' => 'csa',
		'CsaV3_4G014860' => 'csa',
		'CsaV3_4G021860' => 'csa',
		'CsaV3_6G009880' => 'csa',
		'CsaV3_7G021240' => 'csa',
		'CsaV3_UNG240600' => 'csa',
		'CSS0003516' => 'camsi',
		'CSS0013023' => 'camsi',
		'CSS0017680' => 'camsi',
		'CSS0018551' => 'camsi',
		'CSS0026792' => 'camsi',
		'CSS0028271' => 'camsi',
		'CSS0033603' => 'camsi',
		'CSS0040789' => 'camsi',
		'CSS0045068' => 'camsi',
		'CSS0045803' => 'camsi',
		'Dinv10528' => 'din',
		'Duzib116G0875' => 'dzi',
		'Duzib128G0055' => 'dzi',
		'EL10Ac1g02377' => 'bvu',
		'EL10Ac1g02378' => 'bvu',
		'EL10Ac2g03486' => 'bvu',
		'EL10Ac2g03487' => 'bvu',
		'EL10Ac3g05722' => 'bvu',
		'EL10Ac3g06186' => 'bvu',
		'EL10Ac5g11258' => 'bvu',
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		'EL10Ac8g18762' => 'bvu',
		'EL10Ac9g20847' => 'bvu',
		'EL10As7g23731' => 'bvu',
		'EL10As7g23732' => 'bvu',
		'FvH4_1g23713' => 'fve',
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		'FvH4_3g10531' => 'fve',
		'FvH4_3g33536' => 'fve',
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		'FvH4_4g19351' => 'fve',
		'FvH4_4g34281' => 'fve',
		'FvH4_5g03811' => 'fve',
		'FvH4_5g03812' => 'fve',
		'FvH4_5g11822' => 'fve',
		'FvH4_5g31701' => 'fve',
		'FvH4_6g12161' => 'fve',
		'FvH4_6g15222' => 'fve',
		'FvH4_6g15223' => 'fve',
		'FvH4_6g19301' => 'fve',
		'FvH4_6g33011' => 'fve',
		'FvH4_6g50161' => 'fve',
		'FvH4_7g04123' => 'fve',
		'FvH4_c7g00010' => 'fve',
		'Gorai.012G165300' => 'gra',
		'HanXRQChr00c0452g0574871' => 'han',
		'HanXRQChr01g0029471' => 'han',
		'HanXRQChr05g0133501' => 'han',
		'HanXRQChr10g0280141' => 'han',
		'HanXRQChr10g0280631' => 'han',
		'HanXRQChr13g0409991' => 'han',
		'HanXRQChr15g0468361' => 'han',
		'Hma1.2p1_0021F.1_g014270' => 'hma',
		'Hma1.2p1_0026F.1_g016730' => 'hma',
		'Hma1.2p1_0177F.1_g077930' => 'hma',
		'Hma1.2p1_0370F.1_g137540' => 'hma',
		'Hma1.2p1_0637F.1_g193600' => 'hma',
		'Hma1.2p1_1045F.1_g251360' => 'hma',
		'Hma1.2p1_1168F.1_g263120' => 'hma',
		'Hma1.2p1_1640F.1_g295040' => 'hma',
		'Hma1.2p1_2467F.1_g322660' => 'hma',
		'Hund01785' => 'sun',
		'Hund04739' => 'sun',
		'Hund07717' => 'sun',
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		'Hund08734' => 'sun',
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		'Hund15051' => 'sun',
		'Hund15082' => 'sun',
		'Hund17998' => 'sun',
		'Hund18526' => 'sun',
		'Hund19828' => 'sun',
		'Hund23384' => 'sun',
		'Hund26399' => 'sun',
		'Hund28766' => 'sun',
		'Hund28768' => 'sun',
		'Lj1A487G33' => 'lonja',
		'Lj1A487G34' => 'lonja',
		'Lj1A489G15' => 'lonja',
		'Lj1C1113T3' => 'lonja',
		'Lj1C3T4' => 'lonja',
		'Lj1C763G4' => 'lonja',
		'Lj1P195T27' => 'lonja',
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		'Lj2P603T27' => 'lonja',
		'Lj2P609T17' => 'lonja',
		'Lj2P727T24' => 'lonja',
		'Lj3C273T2' => 'lonja',
		'Lj3C644G3' => 'lonja',
		'Lj3C644G4' => 'lonja',
		'Lj3P463T4' => 'lonja',
		'Lj3P545T31' => 'lonja',
		'Lj3P820T55' => 'lonja',
		'Lj4C260T12' => 'lonja',
		'Lj4C714G8' => 'lonja',
		'Lj4P131T14' => 'lonja',
		'Lj4P131T15' => 'lonja',
		'Lj5C102G24' => 'lonja',
		'Lj5P491T3' => 'lonja',
		'Lj5P564T12' => 'lonja',
		'Lj5P786T11' => 'lonja',
		'Lj6C97T3' => 'lonja',
		'Lj8P523T19' => 'lonja',
		'Lj9A24G30' => 'lonja',
		'Lj9A424G33' => 'lonja',
		'Lj9C219G10' => 'lonja',
		'Lj9P219T12' => 'lonja',
		'Lj9P705T22' => 'lonja',
		'Lju114C4T7' => 'lonja',
		'Lju1220C5G5' => 'lonja',
		'Lju2092C1G1' => 'lonja',
		'Lju2092C1T0' => 'lonja',
		'Lju225C6G6' => 'lonja',
		'Lju427C2T0' => 'lonja',
		'Lju50C9T4' => 'lonja',
		'Lju926C12T2' => 'lonja',
		'Manes.06G126602' => 'mes',
		'Manes.13G002614' => 'mes',
		'Manes.15G192966' => 'mes',
		'Manes.17G001483' => 'mes',
		'Manes.17G022547' => 'mes',
		'Manes.18G042825' => 'mes',
		'Manes.S026816' => 'mes',
		'Manes.S027416' => 'mes',
		'MBI02_g15234_MAGBIO' => 'mbi',
		'MBI16_g35584_MAGBIO' => 'mbi',
		'MELO3C008948.2' => 'cme',
		'MELO3C010395.2' => 'cme',
		'MELO3C010396.2' => 'cme',
		'MELO3C015759.2' => 'cme',
		'MELO3C022607.2' => 'cme',
		'MELO3C028897.2' => 'cme',
		'Oeu000188.1' => 'oeu',
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		'Oeu036931.1' => 'oeu',
		'Oeu036932.1' => 'oeu',
		'Oeu037340.1' => 'oeu',
		'Oeu037611.1' => 'oeu',
		'Oeu039205.1' => 'oeu',
		'Oeu039325.1' => 'oeu',
		'Oeu040999.1' => 'oeu',
		'Oeu041244.1' => 'oeu',
		'Oeu041682.1' => 'oeu',
		'Oeu041863.1' => 'oeu',
		'Oeu042345.1' => 'oeu',
		'Oeu042346.1' => 'oeu',
		'Oeu042671.1' => 'oeu',
		'Oeu043273.1' => 'oeu',
		'Oeu043573.1' => 'oeu',
		'Oeu044071.1' => 'oeu',
		'Oeu046813.1' => 'oeu',
		'Oeu048160.1' => 'oeu',
		'Oeu048162.1' => 'oeu',
		'Oeu048282.1' => 'oeu',
		'Oeu048297.1' => 'oeu',
		'Oeu048360.1' => 'oeu',
		'Oeu048565.1' => 'oeu',
		'Oeu049268.1' => 'oeu',
		'Oeu049465.1' => 'oeu',
		'Oeu049978.1' => 'oeu',
		'Oeu050628.1' => 'oeu',
		'Oeu050727.1' => 'oeu',
		'Oeu052065.1' => 'oeu',
		'Oeu052582.1' => 'oeu',
		'Oeu053090.1' => 'oeu',
		'Oeu053644.1' => 'oeu',
		'Oeu053713.1' => 'oeu',
		'Oeu055027.1' => 'oeu',
		'Oeu057741.1' => 'oeu',
		'Oeu058973.1' => 'oeu',
		'Oeu060366.1' => 'oeu',
		'Oeu061428.1' => 'oeu',
		'Oeu062087.1' => 'oeu',
		'Oeu062537.1' => 'oeu',
		'Oeu062538.1' => 'oeu',
		'Oeu064387.1' => 'oeu',
		'PGSC0003DMG400002344' => 'stu',
		'PGSC0003DMG400004046' => 'stu',
		'PGSC0003DMG400006418' => 'stu',
		'PGSC0003DMG400008410' => 'stu',
		'PGSC0003DMG400008620' => 'stu',
		'PGSC0003DMG400009504' => 'stu',
		'PGSC0003DMG400009845' => 'stu',
		'PGSC0003DMG400011177' => 'stu',
		'PGSC0003DMG400011629' => 'stu',
		'PGSC0003DMG400013586' => 'stu',
		'PGSC0003DMG400013599' => 'stu',
		'PGSC0003DMG400014534' => 'stu',
		'PGSC0003DMG400016055' => 'stu',
		'PGSC0003DMG400016736' => 'stu',
		'PGSC0003DMG400016866' => 'stu',
		'PGSC0003DMG400017701' => 'stu',
		'PGSC0003DMG400018448' => 'stu',
		'PGSC0003DMG400020751' => 'stu',
		'PGSC0003DMG400021088' => 'stu',
		'PGSC0003DMG400021387' => 'stu',
		'PGSC0003DMG400021640' => 'stu',
		'PGSC0003DMG400021704' => 'stu',
		'PGSC0003DMG400022155' => 'stu',
		'PGSC0003DMG400023544' => 'stu',
		'PGSC0003DMG400023564' => 'stu',
		'PGSC0003DMG400028558' => 'stu',
		'PGSC0003DMG400028618' => 'stu',
		'PGSC0003DMG400029149' => 'stu',
		'PGSC0003DMG400029979' => 'stu',
		'PGSC0003DMG400030069' => 'stu',
		'PGSC0003DMG400031272' => 'stu',
		'PGSC0003DMG400034656' => 'stu',
		'PGSC0003DMG400035151' => 'stu',
		'PGSC0003DMG400035741' => 'stu',
		'PGSC0003DMG400036100' => 'stu',
		'PGSC0003DMG400037683' => 'stu',
		'PGSC0003DMG400038046' => 'stu',
		'PGSC0003DMG400040121' => 'stu',
		'PGSC0003DMG400042113' => 'stu',
		'PGSC0003DMG400042218' => 'stu',
		'PGSC0003DMG400044188' => 'stu',
		'PGSC0003DMG400044323' => 'stu',
		'PGSC0003DMG400045014' => 'stu',
		'PGSC0003DMG400045177' => 'stu',
		'PGSC0003DMG400047199' => 'stu',
		'Potri.017G071366' => 'ptr',
		'RcHm_v2.0_Chr2g0137481' => 'rch',
		'Sc20g0003180' => 'sci',
		'SEGI_00305' => 'sgi',
		'SEGI_02246' => 'sgi',
		'SEGI_03696' => 'sgi',
		'SEGI_05490' => 'sgi',
		'SEGI_05682' => 'sgi',
		'SEGI_05900' => 'sgi',
		'SEGI_06517' => 'sgi',
		'SEGI_12587' => 'sgi',
		'SEGI_13129' => 'sgi',
		'SEGI_16935' => 'sgi',
		'SEGI_18008' => 'sgi',
		'SEGI_18224' => 'sgi',
		'SEGI_20188' => 'sgi',
		'SEGI_20772' => 'sgi',
		'SEGI_20842' => 'sgi',
		'SEGI_22270' => 'sgi',
		'SEGI_22705' => 'sgi',
		'SEGI_23638' => 'sgi',
		'SEGI_23928' => 'sgi',
		'SEGI_24790' => 'sgi',
		'SEGI_28421' => 'sgi',
		'SEGI_28832' => 'sgi',
		'SEGI_29884' => 'sgi',
		'SEGI_30829' => 'sgi',
		'SEGI_35046' => 'sgi',
		'SEGI_35582' => 'sgi',
		'SEGI_37882' => 'sgi',
		'SEGI_39680' => 'sgi',
		'SEGI_40069' => 'sgi',
		'SEGI_40087' => 'sgi',
		'SEGI_41606' => 'sgi',
		'SGA_v2.0_scaffold50G18578' => 'sas',
		'SHI00293' => 'shi',
		'SHI00389' => 'shi',
		'SHI00445' => 'shi',
		'SHI01000' => 'shi',
		'SHI01503' => 'shi',
		'SHI01718' => 'shi',
		'SHI03454' => 'shi',
		'SHI03493' => 'shi',
		'SHI03494' => 'shi',
		'SHI03628' => 'shi',
		'SHI04457' => 'shi',
		'SHI04691' => 'shi',
		'SHI04829' => 'shi',
		'SHI05225' => 'shi',
		'SHI06326' => 'shi',
		'SHI06505' => 'shi',
		'SHI06770' => 'shi',
		'SHI07388' => 'shi',
		'SHI07582' => 'shi',
		'SHI07583' => 'shi',
		'SHI08271' => 'shi',
		'SHI10619' => 'shi',
		'SHI10892' => 'shi',
		'SHI10910' => 'shi',
		'SHI10911' => 'shi',
		'SHI14326' => 'shi',
		'SHI14681' => 'shi',
		'SHI15017' => 'shi',
		'SHI15096' => 'shi',
		'SHI15120' => 'shi',
		'SHI15274' => 'shi',
		'SHI16232' => 'shi',
		'SHI16811' => 'shi',
		'SHI17386' => 'shi',
		'SHI17926' => 'shi',
		'SHI18293' => 'shi',
		'SHI20489' => 'shi',
		'SHI20658' => 'shi',
		'SHI20663' => 'shi',
		'SHI21566' => 'shi',
		'SHI22547' => 'shi',
		'SHI22708' => 'shi',
		'SHI22709' => 'shi',
		'SHI22878' => 'shi',
		'SHI22879' => 'shi',
		'SHI23024' => 'shi',
		'SHI25053' => 'shi',
		'SHI25076' => 'shi',
		'SHI25116' => 'shi',
		'SHI25381' => 'shi',
		'SHI25535' => 'shi',
		'SHI25740' => 'shi',
		'SHI25991' => 'shi',
		'SHI26344' => 'shi',
		'SHI26345' => 'shi',
		'SHI27097' => 'shi',
		'SHI27140' => 'shi',
		'SHI27178' => 'shi',
		'SHI27207' => 'shi',
		'SHI27225' => 'shi',
		'SHI27734' => 'shi',
		'SHI27806' => 'shi',
		'SHI28576' => 'shi',
		'SHI29081' => 'shi',
		'SHI30038' => 'shi',
		'SHI30394' => 'shi',
		'SHI30652' => 'shi',
		'SHI32154' => 'shi',
		'SHI32205' => 'shi',
		'SHI32365' => 'shi',
		'SHI32439' => 'shi',
		'SHI32505' => 'shi',
		'SHI32626' => 'shi',
		'SHI32714' => 'shi',
		'SHI32715' => 'shi',
		'SHI32716' => 'shi',
		'SHI33118' => 'shi',
		'SHI33318' => 'shi',
		'SHI33373' => 'shi',
		'SHI33512' => 'shi',
		'SHI33625' => 'shi',
		'SHI34327' => 'shi',
		'SHI35604' => 'shi',
		'SHI36119' => 'shi',
		'SHI36120' => 'shi',
		'SHI44959' => 'shi',
		'SHI46406' => 'shi',
		'SHI48191' => 'shi',
		'SHI48192' => 'shi',
		'Solyc10g150111.1' => 'sly',
		'Solyc12g062340.2' => 'sly',
		'Sopen00g001750' => 'spe',
		'Sopen00g001820' => 'spe',
		'Sopen00g001830' => 'spe',
		'Sopen00g001890' => 'spe',
		'Sopen00g002240' => 'spe',
		'Sopen00g003950' => 'spe',
		'Sopen00g004130' => 'spe',
		'Sopen00g004810' => 'spe',
		'Sopen00g005120' => 'spe',
		'Sopen00g005190' => 'spe',
		'Sopen00g007000' => 'spe',
		'Sopen00g007210' => 'spe',
		'Sopen00g012840' => 'spe',
		'Sopen00g013060' => 'spe',
		'Sopen00g013610' => 'spe',
		'Sopen00g013630' => 'spe',
		'Sopen01g004610' => 'spe',
		'Sopen01g007660' => 'spe',
		'Sopen01g007750' => 'spe',
		'Sopen01g007760' => 'spe',
		'Sopen01g007770' => 'spe',
		'Sopen01g007860' => 'spe',
		'Sopen01g009130' => 'spe',
		'Sopen01g009820' => 'spe',
		'Sopen01g011240' => 'spe',
		'Sopen01g012740' => 'spe',
		'Sopen01g013840' => 'spe',
		'Sopen01g013850' => 'spe',
		'Sopen01g016140' => 'spe',
		'Sopen01g016150' => 'spe',
		'Sopen01g016830' => 'spe',
		'Sopen01g017260' => 'spe',
		'Sopen01g019000' => 'spe',
		'Sopen01g019690' => 'spe',
		'Sopen01g022160' => 'spe',
		'Sopen01g024000' => 'spe',
		'Sopen01g024670' => 'spe',
		'Sopen01g024770' => 'spe',
		'Sopen01g024900' => 'spe',
		'Sopen01g025130' => 'spe',
		'Sopen01g026370' => 'spe',
		'Sopen01g041640' => 'spe',
		'Sopen01g046930' => 'spe',
		'Sopen02g001360' => 'spe',
		'Sopen02g002010' => 'spe',
		'Sopen02g003600' => 'spe',
		'Sopen02g003730' => 'spe',
		'Sopen02g005430' => 'spe',
		'Sopen02g005510' => 'spe',
		'Sopen02g006840' => 'spe',
		'Sopen02g007390' => 'spe',
		'Sopen02g007420' => 'spe',
		'Sopen02g007540' => 'spe',
		'Sopen02g007920' => 'spe',
		'Sopen02g008960' => 'spe',
		'Sopen02g009450' => 'spe',
		'Sopen02g009460' => 'spe',
		'Sopen02g011320' => 'spe',
		'Sopen02g012680' => 'spe',
		'Sopen02g018090' => 'spe',
		'Sopen02g022140' => 'spe',
		'Sopen03g010330' => 'spe',
		'Sopen03g013130' => 'spe',
		'Sopen03g013180' => 'spe',
		'Sopen03g013230' => 'spe',
		'Sopen03g014110' => 'spe',
		'Sopen03g015260' => 'spe',
		'Sopen03g015790' => 'spe',
		'Sopen03g018360' => 'spe',
		'Sopen03g024470' => 'spe',
		'Sopen03g026800' => 'spe',
		'Sopen04g003180' => 'spe',
		'Sopen04g008260' => 'spe',
		'Sopen04g010320' => 'spe',
		'Sopen04g011020' => 'spe',
		'Sopen04g011200' => 'spe',
		'Sopen04g011280' => 'spe',
		'Sopen04g021910' => 'spe',
		'Sopen04g023870' => 'spe',
		'Sopen05g009880' => 'spe',
		'Sopen05g011580' => 'spe',
		'Sopen05g012230' => 'spe',
		'Sopen05g012500' => 'spe',
		'Sopen05g012560' => 'spe',
		'Sopen05g012570' => 'spe',
		'Sopen05g012760' => 'spe',
		'Sopen05g013710' => 'spe',
		'Sopen05g015050' => 'spe',
		'Sopen05g026090' => 'spe',
		'Sopen05g028020' => 'spe',
		'Sopen05g028610' => 'spe',
		'Sopen05g029300' => 'spe',
		'Sopen06g005520' => 'spe',
		'Sopen06g006750' => 'spe',
		'Sopen06g008160' => 'spe',
		'Sopen06g009120' => 'spe',
		'Sopen06g013550' => 'spe',
		'Sopen06g015340' => 'spe',
		'Sopen06g018330' => 'spe',
		'Sopen06g021630' => 'spe',
		'Sopen06g021650' => 'spe',
		'Sopen07g006730' => 'spe',
		'Sopen07g008690' => 'spe',
		'Sopen07g008700' => 'spe',
		'Sopen07g008720' => 'spe',
		'Sopen07g008870' => 'spe',
		'Sopen07g009400' => 'spe',
		'Sopen07g009410' => 'spe',
		'Sopen07g009470' => 'spe',
		'Sopen07g009540' => 'spe',
		'Sopen07g011060' => 'spe',
		'Sopen07g011110' => 'spe',
		'Sopen07g011820' => 'spe',
		'Sopen07g013260' => 'spe',
		'Sopen07g014740' => 'spe',
		'Sopen07g015160' => 'spe',
		'Sopen07g015230' => 'spe',
		'Sopen07g016240' => 'spe',
		'Sopen07g017200' => 'spe',
		'Sopen07g017810' => 'spe',
		'Sopen07g019030' => 'spe',
		'Sopen07g020430' => 'spe',
		'Sopen07g021010' => 'spe',
		'Sopen07g021340' => 'spe',
		'Sopen07g022950' => 'spe',
		'Sopen07g027860' => 'spe',
		'Sopen08g007820' => 'spe',
		'Sopen08g009330' => 'spe',
		'Sopen08g012310' => 'spe',
		'Sopen08g012560' => 'spe',
		'Sopen08g014040' => 'spe',
		'Sopen08g014650' => 'spe',
		'Sopen08g017020' => 'spe',
		'Sopen08g018300' => 'spe',
		'Sopen08g020530' => 'spe',
		'Sopen09g008590' => 'spe',
		'Sopen09g008780' => 'spe',
		'Sopen09g011540' => 'spe',
		'Sopen09g011920' => 'spe',
		'Sopen09g014170' => 'spe',
		'Sopen09g016520' => 'spe',
		'Sopen09g021030' => 'spe',
		'Sopen09g023110' => 'spe',
		'Sopen09g024750' => 'spe',
		'Sopen09g025230' => 'spe',
		'Sopen09g025600' => 'spe',
		'Sopen09g034660' => 'spe',
		'Sopen10g006700' => 'spe',
		'Sopen10g009130' => 'spe',
		'Sopen10g009140' => 'spe',
		'Sopen10g009560' => 'spe',
		'Sopen10g010340' => 'spe',
		'Sopen10g011040' => 'spe',
		'Sopen10g013650' => 'spe',
		'Sopen10g014130' => 'spe',
		'Sopen10g014140' => 'spe',
		'Sopen10g014760' => 'spe',
		'Sopen10g015080' => 'spe',
		'Sopen10g015830' => 'spe',
		'Sopen10g018240' => 'spe',
		'Sopen10g018300' => 'spe',
		'Sopen10g018350' => 'spe',
		'Sopen10g018460' => 'spe',
		'Sopen10g018670' => 'spe',
		'Sopen10g019040' => 'spe',
		'Sopen10g019330' => 'spe',
		'Sopen10g019340' => 'spe',
		'Sopen10g019360' => 'spe',
		'Sopen10g019370' => 'spe',
		'Sopen10g020620' => 'spe',
		'Sopen10g021550' => 'spe',
		'Sopen10g022160' => 'spe',
		'Sopen10g023540' => 'spe',
		'Sopen10g023570' => 'spe',
		'Sopen10g023580' => 'spe',
		'Sopen10g023600' => 'spe',
		'Sopen10g023620' => 'spe',
		'Sopen10g023650' => 'spe',
		'Sopen10g024800' => 'spe',
		'Sopen10g026170' => 'spe',
		'Sopen11g007790' => 'spe',
		'Sopen11g010170' => 'spe',
		'Sopen11g010580' => 'spe',
		'Sopen11g013420' => 'spe',
		'Sopen11g016330' => 'spe',
		'Sopen11g017010' => 'spe',
		'Sopen11g018110' => 'spe',
		'Sopen11g018960' => 'spe',
		'Sopen11g019000' => 'spe',
		'Sopen11g019970' => 'spe',
		'Sopen11g020340' => 'spe',
		'Sopen11g020970' => 'spe',
		'Sopen12g008510' => 'spe',
		'Sopen12g008910' => 'spe',
		'Sopen12g009010' => 'spe',
		'Sopen12g009120' => 'spe',
		'Sopen12g009340' => 'spe',
		'Sopen12g009580' => 'spe',
		'Sopen12g010190' => 'spe',
		'Sopen12g010320' => 'spe',
		'Sopen12g010370' => 'spe',
		'Sopen12g012140' => 'spe',
		'Sopen12g012700' => 'spe',
		'Sopen12g013490' => 'spe',
		'Sopen12g014290' => 'spe',
		'Sopen12g015060' => 'spe',
		'Sopen12g015610' => 'spe',
		'Sopen12g018380' => 'spe',
		'Sopen12g019150' => 'spe',
		'Sopen12g020560' => 'spe',
		'Sopen12g023320' => 'spe',
		'Sp3g24190' => 'spa',
		'Sp4g07270' => 'spa',
		'Sp4g07530' => 'spa',
		'Sp4g07670' => 'spa',
		'Sp6g09360' => 'spa',
		'Sp7g04180' => 'spa',
		'Sp7g04980' => 'spa',
		'Sp7g08200' => 'spa',
		'Sp7g09660' => 'spa',
		'SpUn0081_0010' => 'spa',
		'THA.LOC104803417' => 'tha',
		'THA.LOC104817059' => 'tha',
		'Thecc.01G188700' => 'tca',
		'Thecc.05G106700' => 'tca',
		'Thecc.06G068800' => 'tca',
		'Thecc.07G189100' => 'tca',
		'Thecc.09G172800' => 'tca',
		'Thhalv10023044m.g' => 'esa',
		'Thhalv10023881m.g' => 'esa',
		'Thhalv10024067m.g' => 'esa'
	),
	'gf_id' => 'HOM05D000691',
	'gf_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'gf_types_configuration' => array(
		'HOMFAM' => array(
			'order' => '1',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		),
		'ORTHOFAM' => array(
			'order' => '2',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		)
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'allow_async_use' => true,
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D000691'
	),
	'data_identifier' => 'HOM05D000691',
	'data_type' => 'gf_id'
)
$sidebar_info = array(
	'gf_id' => 'HOM05D000691',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '827',
	'num_species' => '39'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$gf_genes = array(
	'Ah.01g012340' => 'amhyb',
	'Ah.01g013530' => 'amhyb',
	'Ah.03g143080' => 'amhyb',
	'Ah.06g186750' => 'amhyb',
	'Ah.06g186800' => 'amhyb',
	'Ah.07g200050' => 'amhyb',
	'Ah.08g209110' => 'amhyb',
	'Ah.09g229600' => 'amhyb',
	'Ah.09g229610' => 'amhyb',
	'Ah.10g026490' => 'amhyb',
	'Ah.12g065350' => 'amhyb',
	'Ah.13g069310' => 'amhyb',
	'Ah.14g080130' => 'amhyb',
	'Ah.14g081130' => 'amhyb',
	'Ah.14g081140' => 'amhyb',
	'Ah.16g109160' => 'amhyb',
	'Ah.16g109170' => 'amhyb',
	'Ah.16g109370' => 'amhyb',
	'AL3G47720' => 'aly',
	'ATR0012G060' => 'atr',
	'ATR0026G029' => 'atr',
	'ATR0193G043' => 'atr',
	'ATR0561G076' => 'atr',
	'ATR0561G181' => 'atr',
	'ATR0568G014' => 'atr',
	'ATR0568G114' => 'atr',
	'ATR0620G039' => 'atr',
	'ATR0629G125' => 'atr',
	'ATR0661G583' => 'atr',
	'ATR0686G019' => 'atr',
	'ATR0693G232' => 'atr',
	'ATR0697G104' => 'atr',
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	'SHI10619' => 'shi',
	'SHI10892' => 'shi',
	'SHI10910' => 'shi',
	'SHI10911' => 'shi',
	'SHI14326' => 'shi',
	'SHI14681' => 'shi',
	'SHI15017' => 'shi',
	'SHI15096' => 'shi',
	'SHI15120' => 'shi',
	'SHI15274' => 'shi',
	'SHI16232' => 'shi',
	'SHI16811' => 'shi',
	'SHI17386' => 'shi',
	'SHI17926' => 'shi',
	'SHI18293' => 'shi',
	'SHI20489' => 'shi',
	'SHI20658' => 'shi',
	'SHI20663' => 'shi',
	'SHI21566' => 'shi',
	'SHI22547' => 'shi',
	'SHI22708' => 'shi',
	'SHI22709' => 'shi',
	'SHI22878' => 'shi',
	'SHI22879' => 'shi',
	'SHI23024' => 'shi',
	'SHI25053' => 'shi',
	'SHI25076' => 'shi',
	'SHI25116' => 'shi',
	'SHI25381' => 'shi',
	'SHI25535' => 'shi',
	'SHI25740' => 'shi',
	'SHI25991' => 'shi',
	'SHI26344' => 'shi',
	'SHI26345' => 'shi',
	'SHI27097' => 'shi',
	'SHI27140' => 'shi',
	'SHI27178' => 'shi',
	'SHI27207' => 'shi',
	'SHI27225' => 'shi',
	'SHI27734' => 'shi',
	'SHI27806' => 'shi',
	'SHI28576' => 'shi',
	'SHI29081' => 'shi',
	'SHI30038' => 'shi',
	'SHI30394' => 'shi',
	'SHI30652' => 'shi',
	'SHI32154' => 'shi',
	'SHI32205' => 'shi',
	'SHI32365' => 'shi',
	'SHI32439' => 'shi',
	'SHI32505' => 'shi',
	'SHI32626' => 'shi',
	'SHI32714' => 'shi',
	'SHI32715' => 'shi',
	'SHI32716' => 'shi',
	'SHI33118' => 'shi',
	'SHI33318' => 'shi',
	'SHI33373' => 'shi',
	'SHI33512' => 'shi',
	'SHI33625' => 'shi',
	'SHI34327' => 'shi',
	'SHI35604' => 'shi',
	'SHI36119' => 'shi',
	'SHI36120' => 'shi',
	'SHI44959' => 'shi',
	'SHI46406' => 'shi',
	'SHI48191' => 'shi',
	'SHI48192' => 'shi',
	'Solyc10g150111.1' => 'sly',
	'Solyc12g062340.2' => 'sly',
	'Sopen00g001750' => 'spe',
	'Sopen00g001820' => 'spe',
	'Sopen00g001830' => 'spe',
	'Sopen00g001890' => 'spe',
	'Sopen00g002240' => 'spe',
	'Sopen00g003950' => 'spe',
	'Sopen00g004130' => 'spe',
	'Sopen00g004810' => 'spe',
	'Sopen00g005120' => 'spe',
	'Sopen00g005190' => 'spe',
	'Sopen00g007000' => 'spe',
	'Sopen00g007210' => 'spe',
	'Sopen00g012840' => 'spe',
	'Sopen00g013060' => 'spe',
	'Sopen00g013610' => 'spe',
	'Sopen00g013630' => 'spe',
	'Sopen01g004610' => 'spe',
	'Sopen01g007660' => 'spe',
	'Sopen01g007750' => 'spe',
	'Sopen01g007760' => 'spe',
	'Sopen01g007770' => 'spe',
	'Sopen01g007860' => 'spe',
	'Sopen01g009130' => 'spe',
	'Sopen01g009820' => 'spe',
	'Sopen01g011240' => 'spe',
	'Sopen01g012740' => 'spe',
	'Sopen01g013840' => 'spe',
	'Sopen01g013850' => 'spe',
	'Sopen01g016140' => 'spe',
	'Sopen01g016150' => 'spe',
	'Sopen01g016830' => 'spe',
	'Sopen01g017260' => 'spe',
	'Sopen01g019000' => 'spe',
	'Sopen01g019690' => 'spe',
	'Sopen01g022160' => 'spe',
	'Sopen01g024000' => 'spe',
	'Sopen01g024670' => 'spe',
	'Sopen01g024770' => 'spe',
	'Sopen01g024900' => 'spe',
	'Sopen01g025130' => 'spe',
	'Sopen01g026370' => 'spe',
	'Sopen01g041640' => 'spe',
	'Sopen01g046930' => 'spe',
	'Sopen02g001360' => 'spe',
	'Sopen02g002010' => 'spe',
	'Sopen02g003600' => 'spe',
	'Sopen02g003730' => 'spe',
	'Sopen02g005430' => 'spe',
	'Sopen02g005510' => 'spe',
	'Sopen02g006840' => 'spe',
	'Sopen02g007390' => 'spe',
	'Sopen02g007420' => 'spe',
	'Sopen02g007540' => 'spe',
	'Sopen02g007920' => 'spe',
	'Sopen02g008960' => 'spe',
	'Sopen02g009450' => 'spe',
	'Sopen02g009460' => 'spe',
	'Sopen02g011320' => 'spe',
	'Sopen02g012680' => 'spe',
	'Sopen02g018090' => 'spe',
	'Sopen02g022140' => 'spe',
	'Sopen03g010330' => 'spe',
	'Sopen03g013130' => 'spe',
	'Sopen03g013180' => 'spe',
	'Sopen03g013230' => 'spe',
	'Sopen03g014110' => 'spe',
	'Sopen03g015260' => 'spe',
	'Sopen03g015790' => 'spe',
	'Sopen03g018360' => 'spe',
	'Sopen03g024470' => 'spe',
	'Sopen03g026800' => 'spe',
	'Sopen04g003180' => 'spe',
	'Sopen04g008260' => 'spe',
	'Sopen04g010320' => 'spe',
	'Sopen04g011020' => 'spe',
	'Sopen04g011200' => 'spe',
	'Sopen04g011280' => 'spe',
	'Sopen04g021910' => 'spe',
	'Sopen04g023870' => 'spe',
	'Sopen05g009880' => 'spe',
	'Sopen05g011580' => 'spe',
	'Sopen05g012230' => 'spe',
	'Sopen05g012500' => 'spe',
	'Sopen05g012560' => 'spe',
	'Sopen05g012570' => 'spe',
	'Sopen05g012760' => 'spe',
	'Sopen05g013710' => 'spe',
	'Sopen05g015050' => 'spe',
	'Sopen05g026090' => 'spe',
	'Sopen05g028020' => 'spe',
	'Sopen05g028610' => 'spe',
	'Sopen05g029300' => 'spe',
	'Sopen06g005520' => 'spe',
	'Sopen06g006750' => 'spe',
	'Sopen06g008160' => 'spe',
	'Sopen06g009120' => 'spe',
	'Sopen06g013550' => 'spe',
	'Sopen06g015340' => 'spe',
	'Sopen06g018330' => 'spe',
	'Sopen06g021630' => 'spe',
	'Sopen06g021650' => 'spe',
	'Sopen07g006730' => 'spe',
	'Sopen07g008690' => 'spe',
	'Sopen07g008700' => 'spe',
	'Sopen07g008720' => 'spe',
	'Sopen07g008870' => 'spe',
	'Sopen07g009400' => 'spe',
	'Sopen07g009410' => 'spe',
	'Sopen07g009470' => 'spe',
	'Sopen07g009540' => 'spe',
	'Sopen07g011060' => 'spe',
	'Sopen07g011110' => 'spe',
	'Sopen07g011820' => 'spe',
	'Sopen07g013260' => 'spe',
	'Sopen07g014740' => 'spe',
	'Sopen07g015160' => 'spe',
	'Sopen07g015230' => 'spe',
	'Sopen07g016240' => 'spe',
	'Sopen07g017200' => 'spe',
	'Sopen07g017810' => 'spe',
	'Sopen07g019030' => 'spe',
	'Sopen07g020430' => 'spe',
	'Sopen07g021010' => 'spe',
	'Sopen07g021340' => 'spe',
	'Sopen07g022950' => 'spe',
	'Sopen07g027860' => 'spe',
	'Sopen08g007820' => 'spe',
	'Sopen08g009330' => 'spe',
	'Sopen08g012310' => 'spe',
	'Sopen08g012560' => 'spe',
	'Sopen08g014040' => 'spe',
	'Sopen08g014650' => 'spe',
	'Sopen08g017020' => 'spe',
	'Sopen08g018300' => 'spe',
	'Sopen08g020530' => 'spe',
	'Sopen09g008590' => 'spe',
	'Sopen09g008780' => 'spe',
	'Sopen09g011540' => 'spe',
	'Sopen09g011920' => 'spe',
	'Sopen09g014170' => 'spe',
	'Sopen09g016520' => 'spe',
	'Sopen09g021030' => 'spe',
	'Sopen09g023110' => 'spe',
	'Sopen09g024750' => 'spe',
	'Sopen09g025230' => 'spe',
	'Sopen09g025600' => 'spe',
	'Sopen09g034660' => 'spe',
	'Sopen10g006700' => 'spe',
	'Sopen10g009130' => 'spe',
	'Sopen10g009140' => 'spe',
	'Sopen10g009560' => 'spe',
	'Sopen10g010340' => 'spe',
	'Sopen10g011040' => 'spe',
	'Sopen10g013650' => 'spe',
	'Sopen10g014130' => 'spe',
	'Sopen10g014140' => 'spe',
	'Sopen10g014760' => 'spe',
	'Sopen10g015080' => 'spe',
	'Sopen10g015830' => 'spe',
	'Sopen10g018240' => 'spe',
	'Sopen10g018300' => 'spe',
	'Sopen10g018350' => 'spe',
	'Sopen10g018460' => 'spe',
	'Sopen10g018670' => 'spe',
	'Sopen10g019040' => 'spe',
	'Sopen10g019330' => 'spe',
	'Sopen10g019340' => 'spe',
	'Sopen10g019360' => 'spe',
	'Sopen10g019370' => 'spe',
	'Sopen10g020620' => 'spe',
	'Sopen10g021550' => 'spe',
	'Sopen10g022160' => 'spe',
	'Sopen10g023540' => 'spe',
	'Sopen10g023570' => 'spe',
	'Sopen10g023580' => 'spe',
	'Sopen10g023600' => 'spe',
	'Sopen10g023620' => 'spe',
	'Sopen10g023650' => 'spe',
	'Sopen10g024800' => 'spe',
	'Sopen10g026170' => 'spe',
	'Sopen11g007790' => 'spe',
	'Sopen11g010170' => 'spe',
	'Sopen11g010580' => 'spe',
	'Sopen11g013420' => 'spe',
	'Sopen11g016330' => 'spe',
	'Sopen11g017010' => 'spe',
	'Sopen11g018110' => 'spe',
	'Sopen11g018960' => 'spe',
	'Sopen11g019000' => 'spe',
	'Sopen11g019970' => 'spe',
	'Sopen11g020340' => 'spe',
	'Sopen11g020970' => 'spe',
	'Sopen12g008510' => 'spe',
	'Sopen12g008910' => 'spe',
	'Sopen12g009010' => 'spe',
	'Sopen12g009120' => 'spe',
	'Sopen12g009340' => 'spe',
	'Sopen12g009580' => 'spe',
	'Sopen12g010190' => 'spe',
	'Sopen12g010320' => 'spe',
	'Sopen12g010370' => 'spe',
	'Sopen12g012140' => 'spe',
	'Sopen12g012700' => 'spe',
	'Sopen12g013490' => 'spe',
	'Sopen12g014290' => 'spe',
	'Sopen12g015060' => 'spe',
	'Sopen12g015610' => 'spe',
	'Sopen12g018380' => 'spe',
	'Sopen12g019150' => 'spe',
	'Sopen12g020560' => 'spe',
	'Sopen12g023320' => 'spe',
	'Sp3g24190' => 'spa',
	'Sp4g07270' => 'spa',
	'Sp4g07530' => 'spa',
	'Sp4g07670' => 'spa',
	'Sp6g09360' => 'spa',
	'Sp7g04180' => 'spa',
	'Sp7g04980' => 'spa',
	'Sp7g08200' => 'spa',
	'Sp7g09660' => 'spa',
	'SpUn0081_0010' => 'spa',
	'THA.LOC104803417' => 'tha',
	'THA.LOC104817059' => 'tha',
	'Thecc.01G188700' => 'tca',
	'Thecc.05G106700' => 'tca',
	'Thecc.06G068800' => 'tca',
	'Thecc.07G189100' => 'tca',
	'Thecc.09G172800' => 'tca',
	'Thhalv10023044m.g' => 'esa',
	'Thhalv10023881m.g' => 'esa',
	'Thhalv10024067m.g' => 'esa'
)
$gf_id = 'HOM05D000691'
$gf_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$gf_types_configuration = array(
	'HOMFAM' => array(
		'order' => '1',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	),
	'ORTHOFAM' => array(
		'order' => '2',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	)
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$allow_async_use = true
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D000691'
)
$data_identifier = 'HOM05D000691'
$data_type = 'gf_id'
$species_gene_counts = array(
	'amhyb' => (int) 18,
	'aly' => (int) 1,
	'atr' => (int) 21,
	'acertr' => (int) 1,
	'cqu' => (int) 90,
	'bol' => (int) 1,
	'can' => (int) 7,
	'cil' => (int) 3,
	'cla' => (int) 15,
	'col' => (int) 1,
	'cpa' => (int) 2,
	'csa' => (int) 7,
	'camsi' => (int) 10,
	'din' => (int) 1,
	'dzi' => (int) 2,
	'bvu' => (int) 18,
	'fve' => (int) 22,
	'gra' => (int) 1,
	'han' => (int) 7,
	'hma' => (int) 9,
	'sun' => (int) 16,
	'lonja' => (int) 46,
	'mes' => (int) 8,
	'mbi' => (int) 2,
	'cme' => (int) 6,
	'oeu' => (int) 110,
	'stu' => (int) 45,
	'ptr' => (int) 1,
	'rch' => (int) 1,
	'sci' => (int) 1,
	'sgi' => (int) 31,
	'sas' => (int) 1,
	'shi' => (int) 89,
	'sly' => (int) 2,
	'spe' => (int) 211,
	'spa' => (int) 10,
	'tha' => (int) 2,
	'tca' => (int) 5,
	'esa' => (int) 3
)
$gf_gene_species = 'esa'
$gf_gene_id = 'Thhalv10024067m.g'
$species_info = array(
	'species' => 'oeu',
	'common_name' => 'Olea europaea',
	'tax_id' => '4146',
	'version' => 'v1.0'
)
$local_species = 'oeu'
$disabled = ''
$selected = ''
$num_hits = (int) 0
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Analysis/custom_tree_creation.ctp, line 27
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933

Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]
Code Context
        $disabled    = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";

        $selected    = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";

        $num_hits    = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D000691',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '827',
		'num_species' => '39'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'gf_genes' => array(
		'Ah.01g012340' => 'amhyb',
		'Ah.01g013530' => 'amhyb',
		'Ah.03g143080' => 'amhyb',
		'Ah.06g186750' => 'amhyb',
		'Ah.06g186800' => 'amhyb',
		'Ah.07g200050' => 'amhyb',
		'Ah.08g209110' => 'amhyb',
		'Ah.09g229600' => 'amhyb',
		'Ah.09g229610' => 'amhyb',
		'Ah.10g026490' => 'amhyb',
		'Ah.12g065350' => 'amhyb',
		'Ah.13g069310' => 'amhyb',
		'Ah.14g080130' => 'amhyb',
		'Ah.14g081130' => 'amhyb',
		'Ah.14g081140' => 'amhyb',
		'Ah.16g109160' => 'amhyb',
		'Ah.16g109170' => 'amhyb',
		'Ah.16g109370' => 'amhyb',
		'AL3G47720' => 'aly',
		'ATR0012G060' => 'atr',
		'ATR0026G029' => 'atr',
		'ATR0193G043' => 'atr',
		'ATR0561G076' => 'atr',
		'ATR0561G181' => 'atr',
		'ATR0568G014' => 'atr',
		'ATR0568G114' => 'atr',
		'ATR0620G039' => 'atr',
		'ATR0629G125' => 'atr',
		'ATR0661G583' => 'atr',
		'ATR0686G019' => 'atr',
		'ATR0693G232' => 'atr',
		'ATR0697G104' => 'atr',
		'ATR0789G146' => 'atr',
		'ATR0794G066' => 'atr',
		'ATR1127G127' => 'atr',
		'ATR1131G040' => 'atr',
		'ATR1134G004' => 'atr',
		'ATR1134G095' => 'atr',
		'ATR1152G110' => 'atr',
		'ATR1153G065' => 'atr',
		'Atru.chr3.2296' => 'acertr',
		'AUR62000692' => 'cqu',
		'AUR62001473' => 'cqu',
		'AUR62001812' => 'cqu',
		'AUR62002706' => 'cqu',
		'AUR62003904' => 'cqu',
		'AUR62003905' => 'cqu',
		'AUR62004840' => 'cqu',
		'AUR62005160' => 'cqu',
		'AUR62005604' => 'cqu',
		'AUR62005891' => 'cqu',
		'AUR62007290' => 'cqu',
		'AUR62007502' => 'cqu',
		'AUR62007923' => 'cqu',
		'AUR62009972' => 'cqu',
		'AUR62010488' => 'cqu',
		'AUR62010643' => 'cqu',
		'AUR62012637' => 'cqu',
		'AUR62013492' => 'cqu',
		'AUR62014239' => 'cqu',
		'AUR62014878' => 'cqu',
		'AUR62015857' => 'cqu',
		'AUR62016224' => 'cqu',
		'AUR62017430' => 'cqu',
		'AUR62017467' => 'cqu',
		'AUR62018234' => 'cqu',
		'AUR62019060' => 'cqu',
		'AUR62019607' => 'cqu',
		'AUR62019661' => 'cqu',
		'AUR62022775' => 'cqu',
		'AUR62023603' => 'cqu',
		'AUR62024563' => 'cqu',
		'AUR62026199' => 'cqu',
		'AUR62026905' => 'cqu',
		'AUR62028639' => 'cqu',
		'AUR62029168' => 'cqu',
		'AUR62029551' => 'cqu',
		'AUR62029860' => 'cqu',
		'AUR62030164' => 'cqu',
		'AUR62031208' => 'cqu',
		'AUR62031287' => 'cqu',
		'AUR62031817' => 'cqu',
		'AUR62032126' => 'cqu',
		'AUR62032358' => 'cqu',
		'AUR62032884' => 'cqu',
		'AUR62032892' => 'cqu',
		'AUR62033082' => 'cqu',
		'AUR62033100' => 'cqu',
		'AUR62033255' => 'cqu',
		'AUR62033698' => 'cqu',
		'AUR62033757' => 'cqu',
		'AUR62034760' => 'cqu',
		'AUR62034860' => 'cqu',
		'AUR62035179' => 'cqu',
		'AUR62035881' => 'cqu',
		'AUR62036824' => 'cqu',
		'AUR62036876' => 'cqu',
		'AUR62037319' => 'cqu',
		'AUR62037362' => 'cqu',
		'AUR62037541' => 'cqu',
		'AUR62037853' => 'cqu',
		'AUR62038299' => 'cqu',
		'AUR62038563' => 'cqu',
		'AUR62038564' => 'cqu',
		'AUR62038594' => 'cqu',
		'AUR62038792' => 'cqu',
		'AUR62038947' => 'cqu',
		'AUR62039030' => 'cqu',
		'AUR62039231' => 'cqu',
		'AUR62039452' => 'cqu',
		'AUR62040334' => 'cqu',
		'AUR62040869' => 'cqu',
		'AUR62040870' => 'cqu',
		'AUR62040916' => 'cqu',
		'AUR62041199' => 'cqu',
		'AUR62041334' => 'cqu',
		'AUR62041608' => 'cqu',
		'AUR62041609' => 'cqu',
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		'SHI48192' => 'shi',
		'Solyc10g150111.1' => 'sly',
		'Solyc12g062340.2' => 'sly',
		'Sopen00g001750' => 'spe',
		'Sopen00g001820' => 'spe',
		'Sopen00g001830' => 'spe',
		'Sopen00g001890' => 'spe',
		'Sopen00g002240' => 'spe',
		'Sopen00g003950' => 'spe',
		'Sopen00g004130' => 'spe',
		'Sopen00g004810' => 'spe',
		'Sopen00g005120' => 'spe',
		'Sopen00g005190' => 'spe',
		'Sopen00g007000' => 'spe',
		'Sopen00g007210' => 'spe',
		'Sopen00g012840' => 'spe',
		'Sopen00g013060' => 'spe',
		'Sopen00g013610' => 'spe',
		'Sopen00g013630' => 'spe',
		'Sopen01g004610' => 'spe',
		'Sopen01g007660' => 'spe',
		'Sopen01g007750' => 'spe',
		'Sopen01g007760' => 'spe',
		'Sopen01g007770' => 'spe',
		'Sopen01g007860' => 'spe',
		'Sopen01g009130' => 'spe',
		'Sopen01g009820' => 'spe',
		'Sopen01g011240' => 'spe',
		'Sopen01g012740' => 'spe',
		'Sopen01g013840' => 'spe',
		'Sopen01g013850' => 'spe',
		'Sopen01g016140' => 'spe',
		'Sopen01g016150' => 'spe',
		'Sopen01g016830' => 'spe',
		'Sopen01g017260' => 'spe',
		'Sopen01g019000' => 'spe',
		'Sopen01g019690' => 'spe',
		'Sopen01g022160' => 'spe',
		'Sopen01g024000' => 'spe',
		'Sopen01g024670' => 'spe',
		'Sopen01g024770' => 'spe',
		'Sopen01g024900' => 'spe',
		'Sopen01g025130' => 'spe',
		'Sopen01g026370' => 'spe',
		'Sopen01g041640' => 'spe',
		'Sopen01g046930' => 'spe',
		'Sopen02g001360' => 'spe',
		'Sopen02g002010' => 'spe',
		'Sopen02g003600' => 'spe',
		'Sopen02g003730' => 'spe',
		'Sopen02g005430' => 'spe',
		'Sopen02g005510' => 'spe',
		'Sopen02g006840' => 'spe',
		'Sopen02g007390' => 'spe',
		'Sopen02g007420' => 'spe',
		'Sopen02g007540' => 'spe',
		'Sopen02g007920' => 'spe',
		'Sopen02g008960' => 'spe',
		'Sopen02g009450' => 'spe',
		'Sopen02g009460' => 'spe',
		'Sopen02g011320' => 'spe',
		'Sopen02g012680' => 'spe',
		'Sopen02g018090' => 'spe',
		'Sopen02g022140' => 'spe',
		'Sopen03g010330' => 'spe',
		'Sopen03g013130' => 'spe',
		'Sopen03g013180' => 'spe',
		'Sopen03g013230' => 'spe',
		'Sopen03g014110' => 'spe',
		'Sopen03g015260' => 'spe',
		'Sopen03g015790' => 'spe',
		'Sopen03g018360' => 'spe',
		'Sopen03g024470' => 'spe',
		'Sopen03g026800' => 'spe',
		'Sopen04g003180' => 'spe',
		'Sopen04g008260' => 'spe',
		'Sopen04g010320' => 'spe',
		'Sopen04g011020' => 'spe',
		'Sopen04g011200' => 'spe',
		'Sopen04g011280' => 'spe',
		'Sopen04g021910' => 'spe',
		'Sopen04g023870' => 'spe',
		'Sopen05g009880' => 'spe',
		'Sopen05g011580' => 'spe',
		'Sopen05g012230' => 'spe',
		'Sopen05g012500' => 'spe',
		'Sopen05g012560' => 'spe',
		'Sopen05g012570' => 'spe',
		'Sopen05g012760' => 'spe',
		'Sopen05g013710' => 'spe',
		'Sopen05g015050' => 'spe',
		'Sopen05g026090' => 'spe',
		'Sopen05g028020' => 'spe',
		'Sopen05g028610' => 'spe',
		'Sopen05g029300' => 'spe',
		'Sopen06g005520' => 'spe',
		'Sopen06g006750' => 'spe',
		'Sopen06g008160' => 'spe',
		'Sopen06g009120' => 'spe',
		'Sopen06g013550' => 'spe',
		'Sopen06g015340' => 'spe',
		'Sopen06g018330' => 'spe',
		'Sopen06g021630' => 'spe',
		'Sopen06g021650' => 'spe',
		'Sopen07g006730' => 'spe',
		'Sopen07g008690' => 'spe',
		'Sopen07g008700' => 'spe',
		'Sopen07g008720' => 'spe',
		'Sopen07g008870' => 'spe',
		'Sopen07g009400' => 'spe',
		'Sopen07g009410' => 'spe',
		'Sopen07g009470' => 'spe',
		'Sopen07g009540' => 'spe',
		'Sopen07g011060' => 'spe',
		'Sopen07g011110' => 'spe',
		'Sopen07g011820' => 'spe',
		'Sopen07g013260' => 'spe',
		'Sopen07g014740' => 'spe',
		'Sopen07g015160' => 'spe',
		'Sopen07g015230' => 'spe',
		'Sopen07g016240' => 'spe',
		'Sopen07g017200' => 'spe',
		'Sopen07g017810' => 'spe',
		'Sopen07g019030' => 'spe',
		'Sopen07g020430' => 'spe',
		'Sopen07g021010' => 'spe',
		'Sopen07g021340' => 'spe',
		'Sopen07g022950' => 'spe',
		'Sopen07g027860' => 'spe',
		'Sopen08g007820' => 'spe',
		'Sopen08g009330' => 'spe',
		'Sopen08g012310' => 'spe',
		'Sopen08g012560' => 'spe',
		'Sopen08g014040' => 'spe',
		'Sopen08g014650' => 'spe',
		'Sopen08g017020' => 'spe',
		'Sopen08g018300' => 'spe',
		'Sopen08g020530' => 'spe',
		'Sopen09g008590' => 'spe',
		'Sopen09g008780' => 'spe',
		'Sopen09g011540' => 'spe',
		'Sopen09g011920' => 'spe',
		'Sopen09g014170' => 'spe',
		'Sopen09g016520' => 'spe',
		'Sopen09g021030' => 'spe',
		'Sopen09g023110' => 'spe',
		'Sopen09g024750' => 'spe',
		'Sopen09g025230' => 'spe',
		'Sopen09g025600' => 'spe',
		'Sopen09g034660' => 'spe',
		'Sopen10g006700' => 'spe',
		'Sopen10g009130' => 'spe',
		'Sopen10g009140' => 'spe',
		'Sopen10g009560' => 'spe',
		'Sopen10g010340' => 'spe',
		'Sopen10g011040' => 'spe',
		'Sopen10g013650' => 'spe',
		'Sopen10g014130' => 'spe',
		'Sopen10g014140' => 'spe',
		'Sopen10g014760' => 'spe',
		'Sopen10g015080' => 'spe',
		'Sopen10g015830' => 'spe',
		'Sopen10g018240' => 'spe',
		'Sopen10g018300' => 'spe',
		'Sopen10g018350' => 'spe',
		'Sopen10g018460' => 'spe',
		'Sopen10g018670' => 'spe',
		'Sopen10g019040' => 'spe',
		'Sopen10g019330' => 'spe',
		'Sopen10g019340' => 'spe',
		'Sopen10g019360' => 'spe',
		'Sopen10g019370' => 'spe',
		'Sopen10g020620' => 'spe',
		'Sopen10g021550' => 'spe',
		'Sopen10g022160' => 'spe',
		'Sopen10g023540' => 'spe',
		'Sopen10g023570' => 'spe',
		'Sopen10g023580' => 'spe',
		'Sopen10g023600' => 'spe',
		'Sopen10g023620' => 'spe',
		'Sopen10g023650' => 'spe',
		'Sopen10g024800' => 'spe',
		'Sopen10g026170' => 'spe',
		'Sopen11g007790' => 'spe',
		'Sopen11g010170' => 'spe',
		'Sopen11g010580' => 'spe',
		'Sopen11g013420' => 'spe',
		'Sopen11g016330' => 'spe',
		'Sopen11g017010' => 'spe',
		'Sopen11g018110' => 'spe',
		'Sopen11g018960' => 'spe',
		'Sopen11g019000' => 'spe',
		'Sopen11g019970' => 'spe',
		'Sopen11g020340' => 'spe',
		'Sopen11g020970' => 'spe',
		'Sopen12g008510' => 'spe',
		'Sopen12g008910' => 'spe',
		'Sopen12g009010' => 'spe',
		'Sopen12g009120' => 'spe',
		'Sopen12g009340' => 'spe',
		'Sopen12g009580' => 'spe',
		'Sopen12g010190' => 'spe',
		'Sopen12g010320' => 'spe',
		'Sopen12g010370' => 'spe',
		'Sopen12g012140' => 'spe',
		'Sopen12g012700' => 'spe',
		'Sopen12g013490' => 'spe',
		'Sopen12g014290' => 'spe',
		'Sopen12g015060' => 'spe',
		'Sopen12g015610' => 'spe',
		'Sopen12g018380' => 'spe',
		'Sopen12g019150' => 'spe',
		'Sopen12g020560' => 'spe',
		'Sopen12g023320' => 'spe',
		'Sp3g24190' => 'spa',
		'Sp4g07270' => 'spa',
		'Sp4g07530' => 'spa',
		'Sp4g07670' => 'spa',
		'Sp6g09360' => 'spa',
		'Sp7g04180' => 'spa',
		'Sp7g04980' => 'spa',
		'Sp7g08200' => 'spa',
		'Sp7g09660' => 'spa',
		'SpUn0081_0010' => 'spa',
		'THA.LOC104803417' => 'tha',
		'THA.LOC104817059' => 'tha',
		'Thecc.01G188700' => 'tca',
		'Thecc.05G106700' => 'tca',
		'Thecc.06G068800' => 'tca',
		'Thecc.07G189100' => 'tca',
		'Thecc.09G172800' => 'tca',
		'Thhalv10023044m.g' => 'esa',
		'Thhalv10023881m.g' => 'esa',
		'Thhalv10024067m.g' => 'esa'
	),
	'gf_id' => 'HOM05D000691',
	'gf_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'gf_types_configuration' => array(
		'HOMFAM' => array(
			'order' => '1',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		),
		'ORTHOFAM' => array(
			'order' => '2',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		)
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'allow_async_use' => true,
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D000691'
	),
	'data_identifier' => 'HOM05D000691',
	'data_type' => 'gf_id'
)
$sidebar_info = array(
	'gf_id' => 'HOM05D000691',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '827',
	'num_species' => '39'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$gf_genes = array(
	'Ah.01g012340' => 'amhyb',
	'Ah.01g013530' => 'amhyb',
	'Ah.03g143080' => 'amhyb',
	'Ah.06g186750' => 'amhyb',
	'Ah.06g186800' => 'amhyb',
	'Ah.07g200050' => 'amhyb',
	'Ah.08g209110' => 'amhyb',
	'Ah.09g229600' => 'amhyb',
	'Ah.09g229610' => 'amhyb',
	'Ah.10g026490' => 'amhyb',
	'Ah.12g065350' => 'amhyb',
	'Ah.13g069310' => 'amhyb',
	'Ah.14g080130' => 'amhyb',
	'Ah.14g081130' => 'amhyb',
	'Ah.14g081140' => 'amhyb',
	'Ah.16g109160' => 'amhyb',
	'Ah.16g109170' => 'amhyb',
	'Ah.16g109370' => 'amhyb',
	'AL3G47720' => 'aly',
	'ATR0012G060' => 'atr',
	'ATR0026G029' => 'atr',
	'ATR0193G043' => 'atr',
	'ATR0561G076' => 'atr',
	'ATR0561G181' => 'atr',
	'ATR0568G014' => 'atr',
	'ATR0568G114' => 'atr',
	'ATR0620G039' => 'atr',
	'ATR0629G125' => 'atr',
	'ATR0661G583' => 'atr',
	'ATR0686G019' => 'atr',
	'ATR0693G232' => 'atr',
	'ATR0697G104' => 'atr',
	'ATR0789G146' => 'atr',
	'ATR0794G066' => 'atr',
	'ATR1127G127' => 'atr',
	'ATR1131G040' => 'atr',
	'ATR1134G004' => 'atr',
	'ATR1134G095' => 'atr',
	'ATR1152G110' => 'atr',
	'ATR1153G065' => 'atr',
	'Atru.chr3.2296' => 'acertr',
	'AUR62000692' => 'cqu',
	'AUR62001473' => 'cqu',
	'AUR62001812' => 'cqu',
	'AUR62002706' => 'cqu',
	'AUR62003904' => 'cqu',
	'AUR62003905' => 'cqu',
	'AUR62004840' => 'cqu',
	'AUR62005160' => 'cqu',
	'AUR62005604' => 'cqu',
	'AUR62005891' => 'cqu',
	'AUR62007290' => 'cqu',
	'AUR62007502' => 'cqu',
	'AUR62007923' => 'cqu',
	'AUR62009972' => 'cqu',
	'AUR62010488' => 'cqu',
	'AUR62010643' => 'cqu',
	'AUR62012637' => 'cqu',
	'AUR62013492' => 'cqu',
	'AUR62014239' => 'cqu',
	'AUR62014878' => 'cqu',
	'AUR62015857' => 'cqu',
	'AUR62016224' => 'cqu',
	'AUR62017430' => 'cqu',
	'AUR62017467' => 'cqu',
	'AUR62018234' => 'cqu',
	'AUR62019060' => 'cqu',
	'AUR62019607' => 'cqu',
	'AUR62019661' => 'cqu',
	'AUR62022775' => 'cqu',
	'AUR62023603' => 'cqu',
	'AUR62024563' => 'cqu',
	'AUR62026199' => 'cqu',
	'AUR62026905' => 'cqu',
	'AUR62028639' => 'cqu',
	'AUR62029168' => 'cqu',
	'AUR62029551' => 'cqu',
	'AUR62029860' => 'cqu',
	'AUR62030164' => 'cqu',
	'AUR62031208' => 'cqu',
	'AUR62031287' => 'cqu',
	'AUR62031817' => 'cqu',
	'AUR62032126' => 'cqu',
	'AUR62032358' => 'cqu',
	'AUR62032884' => 'cqu',
	'AUR62032892' => 'cqu',
	'AUR62033082' => 'cqu',
	'AUR62033100' => 'cqu',
	'AUR62033255' => 'cqu',
	'AUR62033698' => 'cqu',
	'AUR62033757' => 'cqu',
	'AUR62034760' => 'cqu',
	'AUR62034860' => 'cqu',
	'AUR62035179' => 'cqu',
	'AUR62035881' => 'cqu',
	'AUR62036824' => 'cqu',
	'AUR62036876' => 'cqu',
	'AUR62037319' => 'cqu',
	'AUR62037362' => 'cqu',
	'AUR62037541' => 'cqu',
	'AUR62037853' => 'cqu',
	'AUR62038299' => 'cqu',
	'AUR62038563' => 'cqu',
	'AUR62038564' => 'cqu',
	'AUR62038594' => 'cqu',
	'AUR62038792' => 'cqu',
	'AUR62038947' => 'cqu',
	'AUR62039030' => 'cqu',
	'AUR62039231' => 'cqu',
	'AUR62039452' => 'cqu',
	'AUR62040334' => 'cqu',
	'AUR62040869' => 'cqu',
	'AUR62040870' => 'cqu',
	'AUR62040916' => 'cqu',
	'AUR62041199' => 'cqu',
	'AUR62041334' => 'cqu',
	'AUR62041608' => 'cqu',
	'AUR62041609' => 'cqu',
	'AUR62041833' => 'cqu',
	'AUR62041834' => 'cqu',
	'AUR62042054' => 'cqu',
	'AUR62042134' => 'cqu',
	'AUR62042236' => 'cqu',
	'AUR62042281' => 'cqu',
	'AUR62042593' => 'cqu',
	'AUR62042653' => 'cqu',
	'AUR62043025' => 'cqu',
	'AUR62043026' => 'cqu',
	'AUR62043063' => 'cqu',
	'AUR62043091' => 'cqu',
	'AUR62043320' => 'cqu',
	'BolC5t32558H' => 'bol',
	'CAN.G1036.12' => 'can',
	'CAN.G1432.23' => 'can',
	'CAN.G159.19' => 'can',
	'CAN.G4114.1' => 'can',
	'CAN.G492.85' => 'can',
	'CAN.G500.95' => 'can',
	'CAN.G93.31' => 'can',
	'CiPaw.04G054900' => 'cil',
	'CiPaw.05G045400' => 'cil',
	'CiPaw.15G094100' => 'cil',
	'ClCG00G000700' => 'cla',
	'ClCG00G000780' => 'cla',
	'ClCG01G012280' => 'cla',
	'ClCG02G006140' => 'cla',
	'ClCG02G009810' => 'cla',
	'ClCG03G010170' => 'cla',
	'ClCG03G010260' => 'cla',
	'ClCG04G000770' => 'cla',
	'ClCG05G013980' => 'cla',
	'ClCG06G009110' => 'cla',
	'ClCG06G009120' => 'cla',
	'ClCG08G002190' => 'cla',
	'ClCG09G013830' => 'cla',
	'ClCG10G006760' => 'cla',
	'ClCG11G007310' => 'cla',
	'COL.COLO4_16141' => 'col',
	'Cpa.g.sc202.2' => 'cpa',
	'Cpa.g.sc76.18' => 'cpa',
	'CsaV3_1G031080' => 'csa',
	'CsaV3_4G011870' => 'csa',
	'CsaV3_4G014860' => 'csa',
	'CsaV3_4G021860' => 'csa',
	'CsaV3_6G009880' => 'csa',
	'CsaV3_7G021240' => 'csa',
	'CsaV3_UNG240600' => 'csa',
	'CSS0003516' => 'camsi',
	'CSS0013023' => 'camsi',
	'CSS0017680' => 'camsi',
	'CSS0018551' => 'camsi',
	'CSS0026792' => 'camsi',
	'CSS0028271' => 'camsi',
	'CSS0033603' => 'camsi',
	'CSS0040789' => 'camsi',
	'CSS0045068' => 'camsi',
	'CSS0045803' => 'camsi',
	'Dinv10528' => 'din',
	'Duzib116G0875' => 'dzi',
	'Duzib128G0055' => 'dzi',
	'EL10Ac1g02377' => 'bvu',
	'EL10Ac1g02378' => 'bvu',
	'EL10Ac2g03486' => 'bvu',
	'EL10Ac2g03487' => 'bvu',
	'EL10Ac3g05722' => 'bvu',
	'EL10Ac3g06186' => 'bvu',
	'EL10Ac5g11258' => 'bvu',
	'EL10Ac6g13831' => 'bvu',
	'EL10Ac6g14162' => 'bvu',
	'EL10Ac6g14316' => 'bvu',
	'EL10Ac6g14317' => 'bvu',
	'EL10Ac6g14588' => 'bvu',
	'EL10Ac7g16302' => 'bvu',
	'EL10Ac7g16543' => 'bvu',
	'EL10Ac8g18762' => 'bvu',
	'EL10Ac9g20847' => 'bvu',
	'EL10As7g23731' => 'bvu',
	'EL10As7g23732' => 'bvu',
	'FvH4_1g23713' => 'fve',
	'FvH4_2g00261' => 'fve',
	'FvH4_2g00262' => 'fve',
	'FvH4_2g15681' => 'fve',
	'FvH4_2g17851' => 'fve',
	'FvH4_3g10531' => 'fve',
	'FvH4_3g33536' => 'fve',
	'FvH4_4g03471' => 'fve',
	'FvH4_4g19351' => 'fve',
	'FvH4_4g34281' => 'fve',
	'FvH4_5g03811' => 'fve',
	'FvH4_5g03812' => 'fve',
	'FvH4_5g11822' => 'fve',
	'FvH4_5g31701' => 'fve',
	'FvH4_6g12161' => 'fve',
	'FvH4_6g15222' => 'fve',
	'FvH4_6g15223' => 'fve',
	'FvH4_6g19301' => 'fve',
	'FvH4_6g33011' => 'fve',
	'FvH4_6g50161' => 'fve',
	'FvH4_7g04123' => 'fve',
	'FvH4_c7g00010' => 'fve',
	'Gorai.012G165300' => 'gra',
	'HanXRQChr00c0452g0574871' => 'han',
	'HanXRQChr01g0029471' => 'han',
	'HanXRQChr05g0133501' => 'han',
	'HanXRQChr10g0280141' => 'han',
	'HanXRQChr10g0280631' => 'han',
	'HanXRQChr13g0409991' => 'han',
	'HanXRQChr15g0468361' => 'han',
	'Hma1.2p1_0021F.1_g014270' => 'hma',
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	'Sopen09g025600' => 'spe',
	'Sopen09g034660' => 'spe',
	'Sopen10g006700' => 'spe',
	'Sopen10g009130' => 'spe',
	'Sopen10g009140' => 'spe',
	'Sopen10g009560' => 'spe',
	'Sopen10g010340' => 'spe',
	'Sopen10g011040' => 'spe',
	'Sopen10g013650' => 'spe',
	'Sopen10g014130' => 'spe',
	'Sopen10g014140' => 'spe',
	'Sopen10g014760' => 'spe',
	'Sopen10g015080' => 'spe',
	'Sopen10g015830' => 'spe',
	'Sopen10g018240' => 'spe',
	'Sopen10g018300' => 'spe',
	'Sopen10g018350' => 'spe',
	'Sopen10g018460' => 'spe',
	'Sopen10g018670' => 'spe',
	'Sopen10g019040' => 'spe',
	'Sopen10g019330' => 'spe',
	'Sopen10g019340' => 'spe',
	'Sopen10g019360' => 'spe',
	'Sopen10g019370' => 'spe',
	'Sopen10g020620' => 'spe',
	'Sopen10g021550' => 'spe',
	'Sopen10g022160' => 'spe',
	'Sopen10g023540' => 'spe',
	'Sopen10g023570' => 'spe',
	'Sopen10g023580' => 'spe',
	'Sopen10g023600' => 'spe',
	'Sopen10g023620' => 'spe',
	'Sopen10g023650' => 'spe',
	'Sopen10g024800' => 'spe',
	'Sopen10g026170' => 'spe',
	'Sopen11g007790' => 'spe',
	'Sopen11g010170' => 'spe',
	'Sopen11g010580' => 'spe',
	'Sopen11g013420' => 'spe',
	'Sopen11g016330' => 'spe',
	'Sopen11g017010' => 'spe',
	'Sopen11g018110' => 'spe',
	'Sopen11g018960' => 'spe',
	'Sopen11g019000' => 'spe',
	'Sopen11g019970' => 'spe',
	'Sopen11g020340' => 'spe',
	'Sopen11g020970' => 'spe',
	'Sopen12g008510' => 'spe',
	'Sopen12g008910' => 'spe',
	'Sopen12g009010' => 'spe',
	'Sopen12g009120' => 'spe',
	'Sopen12g009340' => 'spe',
	'Sopen12g009580' => 'spe',
	'Sopen12g010190' => 'spe',
	'Sopen12g010320' => 'spe',
	'Sopen12g010370' => 'spe',
	'Sopen12g012140' => 'spe',
	'Sopen12g012700' => 'spe',
	'Sopen12g013490' => 'spe',
	'Sopen12g014290' => 'spe',
	'Sopen12g015060' => 'spe',
	'Sopen12g015610' => 'spe',
	'Sopen12g018380' => 'spe',
	'Sopen12g019150' => 'spe',
	'Sopen12g020560' => 'spe',
	'Sopen12g023320' => 'spe',
	'Sp3g24190' => 'spa',
	'Sp4g07270' => 'spa',
	'Sp4g07530' => 'spa',
	'Sp4g07670' => 'spa',
	'Sp6g09360' => 'spa',
	'Sp7g04180' => 'spa',
	'Sp7g04980' => 'spa',
	'Sp7g08200' => 'spa',
	'Sp7g09660' => 'spa',
	'SpUn0081_0010' => 'spa',
	'THA.LOC104803417' => 'tha',
	'THA.LOC104817059' => 'tha',
	'Thecc.01G188700' => 'tca',
	'Thecc.05G106700' => 'tca',
	'Thecc.06G068800' => 'tca',
	'Thecc.07G189100' => 'tca',
	'Thecc.09G172800' => 'tca',
	'Thhalv10023044m.g' => 'esa',
	'Thhalv10023881m.g' => 'esa',
	'Thhalv10024067m.g' => 'esa'
)
$gf_id = 'HOM05D000691'
$gf_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$gf_types_configuration = array(
	'HOMFAM' => array(
		'order' => '1',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	),
	'ORTHOFAM' => array(
		'order' => '2',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	)
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$allow_async_use = true
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D000691'
)
$data_identifier = 'HOM05D000691'
$data_type = 'gf_id'
$species_gene_counts = array(
	'amhyb' => (int) 18,
	'aly' => (int) 1,
	'atr' => (int) 21,
	'acertr' => (int) 1,
	'cqu' => (int) 90,
	'bol' => (int) 1,
	'can' => (int) 7,
	'cil' => (int) 3,
	'cla' => (int) 15,
	'col' => (int) 1,
	'cpa' => (int) 2,
	'csa' => (int) 7,
	'camsi' => (int) 10,
	'din' => (int) 1,
	'dzi' => (int) 2,
	'bvu' => (int) 18,
	'fve' => (int) 22,
	'gra' => (int) 1,
	'han' => (int) 7,
	'hma' => (int) 9,
	'sun' => (int) 16,
	'lonja' => (int) 46,
	'mes' => (int) 8,
	'mbi' => (int) 2,
	'cme' => (int) 6,
	'oeu' => (int) 110,
	'stu' => (int) 45,
	'ptr' => (int) 1,
	'rch' => (int) 1,
	'sci' => (int) 1,
	'sgi' => (int) 31,
	'sas' => (int) 1,
	'shi' => (int) 89,
	'sly' => (int) 2,
	'spe' => (int) 211,
	'spa' => (int) 10,
	'tha' => (int) 2,
	'tca' => (int) 5,
	'esa' => (int) 3
)
$gf_gene_species = 'esa'
$gf_gene_id = 'Thhalv10024067m.g'
$species_info = array(
	'species' => 'ptr',
	'common_name' => 'Populus trichocarpa',
	'tax_id' => '3694',
	'version' => 'JGI v4.1'
)
$local_species = 'ptr'
$disabled = ''
$selected = ''
$num_hits = (int) 0
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Analysis/custom_tree_creation.ctp, line 27
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933

Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]
Code Context
        $disabled    = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";

        $selected    = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";

        $num_hits    = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D000691',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '827',
		'num_species' => '39'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'gf_genes' => array(
		'Ah.01g012340' => 'amhyb',
		'Ah.01g013530' => 'amhyb',
		'Ah.03g143080' => 'amhyb',
		'Ah.06g186750' => 'amhyb',
		'Ah.06g186800' => 'amhyb',
		'Ah.07g200050' => 'amhyb',
		'Ah.08g209110' => 'amhyb',
		'Ah.09g229600' => 'amhyb',
		'Ah.09g229610' => 'amhyb',
		'Ah.10g026490' => 'amhyb',
		'Ah.12g065350' => 'amhyb',
		'Ah.13g069310' => 'amhyb',
		'Ah.14g080130' => 'amhyb',
		'Ah.14g081130' => 'amhyb',
		'Ah.14g081140' => 'amhyb',
		'Ah.16g109160' => 'amhyb',
		'Ah.16g109170' => 'amhyb',
		'Ah.16g109370' => 'amhyb',
		'AL3G47720' => 'aly',
		'ATR0012G060' => 'atr',
		'ATR0026G029' => 'atr',
		'ATR0193G043' => 'atr',
		'ATR0561G076' => 'atr',
		'ATR0561G181' => 'atr',
		'ATR0568G014' => 'atr',
		'ATR0568G114' => 'atr',
		'ATR0620G039' => 'atr',
		'ATR0629G125' => 'atr',
		'ATR0661G583' => 'atr',
		'ATR0686G019' => 'atr',
		'ATR0693G232' => 'atr',
		'ATR0697G104' => 'atr',
		'ATR0789G146' => 'atr',
		'ATR0794G066' => 'atr',
		'ATR1127G127' => 'atr',
		'ATR1131G040' => 'atr',
		'ATR1134G004' => 'atr',
		'ATR1134G095' => 'atr',
		'ATR1152G110' => 'atr',
		'ATR1153G065' => 'atr',
		'Atru.chr3.2296' => 'acertr',
		'AUR62000692' => 'cqu',
		'AUR62001473' => 'cqu',
		'AUR62001812' => 'cqu',
		'AUR62002706' => 'cqu',
		'AUR62003904' => 'cqu',
		'AUR62003905' => 'cqu',
		'AUR62004840' => 'cqu',
		'AUR62005160' => 'cqu',
		'AUR62005604' => 'cqu',
		'AUR62005891' => 'cqu',
		'AUR62007290' => 'cqu',
		'AUR62007502' => 'cqu',
		'AUR62007923' => 'cqu',
		'AUR62009972' => 'cqu',
		'AUR62010488' => 'cqu',
		'AUR62010643' => 'cqu',
		'AUR62012637' => 'cqu',
		'AUR62013492' => 'cqu',
		'AUR62014239' => 'cqu',
		'AUR62014878' => 'cqu',
		'AUR62015857' => 'cqu',
		'AUR62016224' => 'cqu',
		'AUR62017430' => 'cqu',
		'AUR62017467' => 'cqu',
		'AUR62018234' => 'cqu',
		'AUR62019060' => 'cqu',
		'AUR62019607' => 'cqu',
		'AUR62019661' => 'cqu',
		'AUR62022775' => 'cqu',
		'AUR62023603' => 'cqu',
		'AUR62024563' => 'cqu',
		'AUR62026199' => 'cqu',
		'AUR62026905' => 'cqu',
		'AUR62028639' => 'cqu',
		'AUR62029168' => 'cqu',
		'AUR62029551' => 'cqu',
		'AUR62029860' => 'cqu',
		'AUR62030164' => 'cqu',
		'AUR62031208' => 'cqu',
		'AUR62031287' => 'cqu',
		'AUR62031817' => 'cqu',
		'AUR62032126' => 'cqu',
		'AUR62032358' => 'cqu',
		'AUR62032884' => 'cqu',
		'AUR62032892' => 'cqu',
		'AUR62033082' => 'cqu',
		'AUR62033100' => 'cqu',
		'AUR62033255' => 'cqu',
		'AUR62033698' => 'cqu',
		'AUR62033757' => 'cqu',
		'AUR62034760' => 'cqu',
		'AUR62034860' => 'cqu',
		'AUR62035179' => 'cqu',
		'AUR62035881' => 'cqu',
		'AUR62036824' => 'cqu',
		'AUR62036876' => 'cqu',
		'AUR62037319' => 'cqu',
		'AUR62037362' => 'cqu',
		'AUR62037541' => 'cqu',
		'AUR62037853' => 'cqu',
		'AUR62038299' => 'cqu',
		'AUR62038563' => 'cqu',
		'AUR62038564' => 'cqu',
		'AUR62038594' => 'cqu',
		'AUR62038792' => 'cqu',
		'AUR62038947' => 'cqu',
		'AUR62039030' => 'cqu',
		'AUR62039231' => 'cqu',
		'AUR62039452' => 'cqu',
		'AUR62040334' => 'cqu',
		'AUR62040869' => 'cqu',
		'AUR62040870' => 'cqu',
		'AUR62040916' => 'cqu',
		'AUR62041199' => 'cqu',
		'AUR62041334' => 'cqu',
		'AUR62041608' => 'cqu',
		'AUR62041609' => 'cqu',
		'AUR62041833' => 'cqu',
		'AUR62041834' => 'cqu',
		'AUR62042054' => 'cqu',
		'AUR62042134' => 'cqu',
		'AUR62042236' => 'cqu',
		'AUR62042281' => 'cqu',
		'AUR62042593' => 'cqu',
		'AUR62042653' => 'cqu',
		'AUR62043025' => 'cqu',
		'AUR62043026' => 'cqu',
		'AUR62043063' => 'cqu',
		'AUR62043091' => 'cqu',
		'AUR62043320' => 'cqu',
		'BolC5t32558H' => 'bol',
		'CAN.G1036.12' => 'can',
		'CAN.G1432.23' => 'can',
		'CAN.G159.19' => 'can',
		'CAN.G4114.1' => 'can',
		'CAN.G492.85' => 'can',
		'CAN.G500.95' => 'can',
		'CAN.G93.31' => 'can',
		'CiPaw.04G054900' => 'cil',
		'CiPaw.05G045400' => 'cil',
		'CiPaw.15G094100' => 'cil',
		'ClCG00G000700' => 'cla',
		'ClCG00G000780' => 'cla',
		'ClCG01G012280' => 'cla',
		'ClCG02G006140' => 'cla',
		'ClCG02G009810' => 'cla',
		'ClCG03G010170' => 'cla',
		'ClCG03G010260' => 'cla',
		'ClCG04G000770' => 'cla',
		'ClCG05G013980' => 'cla',
		'ClCG06G009110' => 'cla',
		'ClCG06G009120' => 'cla',
		'ClCG08G002190' => 'cla',
		'ClCG09G013830' => 'cla',
		'ClCG10G006760' => 'cla',
		'ClCG11G007310' => 'cla',
		'COL.COLO4_16141' => 'col',
		'Cpa.g.sc202.2' => 'cpa',
		'Cpa.g.sc76.18' => 'cpa',
		'CsaV3_1G031080' => 'csa',
		'CsaV3_4G011870' => 'csa',
		'CsaV3_4G014860' => 'csa',
		'CsaV3_4G021860' => 'csa',
		'CsaV3_6G009880' => 'csa',
		'CsaV3_7G021240' => 'csa',
		'CsaV3_UNG240600' => 'csa',
		'CSS0003516' => 'camsi',
		'CSS0013023' => 'camsi',
		'CSS0017680' => 'camsi',
		'CSS0018551' => 'camsi',
		'CSS0026792' => 'camsi',
		'CSS0028271' => 'camsi',
		'CSS0033603' => 'camsi',
		'CSS0040789' => 'camsi',
		'CSS0045068' => 'camsi',
		'CSS0045803' => 'camsi',
		'Dinv10528' => 'din',
		'Duzib116G0875' => 'dzi',
		'Duzib128G0055' => 'dzi',
		'EL10Ac1g02377' => 'bvu',
		'EL10Ac1g02378' => 'bvu',
		'EL10Ac2g03486' => 'bvu',
		'EL10Ac2g03487' => 'bvu',
		'EL10Ac3g05722' => 'bvu',
		'EL10Ac3g06186' => 'bvu',
		'EL10Ac5g11258' => 'bvu',
		'EL10Ac6g13831' => 'bvu',
		'EL10Ac6g14162' => 'bvu',
		'EL10Ac6g14316' => 'bvu',
		'EL10Ac6g14317' => 'bvu',
		'EL10Ac6g14588' => 'bvu',
		'EL10Ac7g16302' => 'bvu',
		'EL10Ac7g16543' => 'bvu',
		'EL10Ac8g18762' => 'bvu',
		'EL10Ac9g20847' => 'bvu',
		'EL10As7g23731' => 'bvu',
		'EL10As7g23732' => 'bvu',
		'FvH4_1g23713' => 'fve',
		'FvH4_2g00261' => 'fve',
		'FvH4_2g00262' => 'fve',
		'FvH4_2g15681' => 'fve',
		'FvH4_2g17851' => 'fve',
		'FvH4_3g10531' => 'fve',
		'FvH4_3g33536' => 'fve',
		'FvH4_4g03471' => 'fve',
		'FvH4_4g19351' => 'fve',
		'FvH4_4g34281' => 'fve',
		'FvH4_5g03811' => 'fve',
		'FvH4_5g03812' => 'fve',
		'FvH4_5g11822' => 'fve',
		'FvH4_5g31701' => 'fve',
		'FvH4_6g12161' => 'fve',
		'FvH4_6g15222' => 'fve',
		'FvH4_6g15223' => 'fve',
		'FvH4_6g19301' => 'fve',
		'FvH4_6g33011' => 'fve',
		'FvH4_6g50161' => 'fve',
		'FvH4_7g04123' => 'fve',
		'FvH4_c7g00010' => 'fve',
		'Gorai.012G165300' => 'gra',
		'HanXRQChr00c0452g0574871' => 'han',
		'HanXRQChr01g0029471' => 'han',
		'HanXRQChr05g0133501' => 'han',
		'HanXRQChr10g0280141' => 'han',
		'HanXRQChr10g0280631' => 'han',
		'HanXRQChr13g0409991' => 'han',
		'HanXRQChr15g0468361' => 'han',
		'Hma1.2p1_0021F.1_g014270' => 'hma',
		'Hma1.2p1_0026F.1_g016730' => 'hma',
		'Hma1.2p1_0177F.1_g077930' => 'hma',
		'Hma1.2p1_0370F.1_g137540' => 'hma',
		'Hma1.2p1_0637F.1_g193600' => 'hma',
		'Hma1.2p1_1045F.1_g251360' => 'hma',
		'Hma1.2p1_1168F.1_g263120' => 'hma',
		'Hma1.2p1_1640F.1_g295040' => 'hma',
		'Hma1.2p1_2467F.1_g322660' => 'hma',
		'Hund01785' => 'sun',
		'Hund04739' => 'sun',
		'Hund07717' => 'sun',
		'Hund08060' => 'sun',
		'Hund08734' => 'sun',
		'Hund10876' => 'sun',
		'Hund14991' => 'sun',
		'Hund15051' => 'sun',
		'Hund15082' => 'sun',
		'Hund17998' => 'sun',
		'Hund18526' => 'sun',
		'Hund19828' => 'sun',
		'Hund23384' => 'sun',
		'Hund26399' => 'sun',
		'Hund28766' => 'sun',
		'Hund28768' => 'sun',
		'Lj1A487G33' => 'lonja',
		'Lj1A487G34' => 'lonja',
		'Lj1A489G15' => 'lonja',
		'Lj1C1113T3' => 'lonja',
		'Lj1C3T4' => 'lonja',
		'Lj1C763G4' => 'lonja',
		'Lj1P195T27' => 'lonja',
		'Lj1P573T13' => 'lonja',
		'Lj1P895T45' => 'lonja',
		'Lj1P995G28' => 'lonja',
		'Lj2A1125G46' => 'lonja',
		'Lj2C116T7' => 'lonja',
		'Lj2P295T30' => 'lonja',
		'Lj2P476T23' => 'lonja',
		'Lj2P603T27' => 'lonja',
		'Lj2P609T17' => 'lonja',
		'Lj2P727T24' => 'lonja',
		'Lj3C273T2' => 'lonja',
		'Lj3C644G3' => 'lonja',
		'Lj3C644G4' => 'lonja',
		'Lj3P463T4' => 'lonja',
		'Lj3P545T31' => 'lonja',
		'Lj3P820T55' => 'lonja',
		'Lj4C260T12' => 'lonja',
		'Lj4C714G8' => 'lonja',
		'Lj4P131T14' => 'lonja',
		'Lj4P131T15' => 'lonja',
		'Lj5C102G24' => 'lonja',
		'Lj5P491T3' => 'lonja',
		'Lj5P564T12' => 'lonja',
		'Lj5P786T11' => 'lonja',
		'Lj6C97T3' => 'lonja',
		'Lj8P523T19' => 'lonja',
		'Lj9A24G30' => 'lonja',
		'Lj9A424G33' => 'lonja',
		'Lj9C219G10' => 'lonja',
		'Lj9P219T12' => 'lonja',
		'Lj9P705T22' => 'lonja',
		'Lju114C4T7' => 'lonja',
		'Lju1220C5G5' => 'lonja',
		'Lju2092C1G1' => 'lonja',
		'Lju2092C1T0' => 'lonja',
		'Lju225C6G6' => 'lonja',
		'Lju427C2T0' => 'lonja',
		'Lju50C9T4' => 'lonja',
		'Lju926C12T2' => 'lonja',
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		'Sopen11g020340' => 'spe',
		'Sopen11g020970' => 'spe',
		'Sopen12g008510' => 'spe',
		'Sopen12g008910' => 'spe',
		'Sopen12g009010' => 'spe',
		'Sopen12g009120' => 'spe',
		'Sopen12g009340' => 'spe',
		'Sopen12g009580' => 'spe',
		'Sopen12g010190' => 'spe',
		'Sopen12g010320' => 'spe',
		'Sopen12g010370' => 'spe',
		'Sopen12g012140' => 'spe',
		'Sopen12g012700' => 'spe',
		'Sopen12g013490' => 'spe',
		'Sopen12g014290' => 'spe',
		'Sopen12g015060' => 'spe',
		'Sopen12g015610' => 'spe',
		'Sopen12g018380' => 'spe',
		'Sopen12g019150' => 'spe',
		'Sopen12g020560' => 'spe',
		'Sopen12g023320' => 'spe',
		'Sp3g24190' => 'spa',
		'Sp4g07270' => 'spa',
		'Sp4g07530' => 'spa',
		'Sp4g07670' => 'spa',
		'Sp6g09360' => 'spa',
		'Sp7g04180' => 'spa',
		'Sp7g04980' => 'spa',
		'Sp7g08200' => 'spa',
		'Sp7g09660' => 'spa',
		'SpUn0081_0010' => 'spa',
		'THA.LOC104803417' => 'tha',
		'THA.LOC104817059' => 'tha',
		'Thecc.01G188700' => 'tca',
		'Thecc.05G106700' => 'tca',
		'Thecc.06G068800' => 'tca',
		'Thecc.07G189100' => 'tca',
		'Thecc.09G172800' => 'tca',
		'Thhalv10023044m.g' => 'esa',
		'Thhalv10023881m.g' => 'esa',
		'Thhalv10024067m.g' => 'esa'
	),
	'gf_id' => 'HOM05D000691',
	'gf_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'gf_types_configuration' => array(
		'HOMFAM' => array(
			'order' => '1',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		),
		'ORTHOFAM' => array(
			'order' => '2',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		)
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'allow_async_use' => true,
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D000691'
	),
	'data_identifier' => 'HOM05D000691',
	'data_type' => 'gf_id'
)
$sidebar_info = array(
	'gf_id' => 'HOM05D000691',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '827',
	'num_species' => '39'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$gf_genes = array(
	'Ah.01g012340' => 'amhyb',
	'Ah.01g013530' => 'amhyb',
	'Ah.03g143080' => 'amhyb',
	'Ah.06g186750' => 'amhyb',
	'Ah.06g186800' => 'amhyb',
	'Ah.07g200050' => 'amhyb',
	'Ah.08g209110' => 'amhyb',
	'Ah.09g229600' => 'amhyb',
	'Ah.09g229610' => 'amhyb',
	'Ah.10g026490' => 'amhyb',
	'Ah.12g065350' => 'amhyb',
	'Ah.13g069310' => 'amhyb',
	'Ah.14g080130' => 'amhyb',
	'Ah.14g081130' => 'amhyb',
	'Ah.14g081140' => 'amhyb',
	'Ah.16g109160' => 'amhyb',
	'Ah.16g109170' => 'amhyb',
	'Ah.16g109370' => 'amhyb',
	'AL3G47720' => 'aly',
	'ATR0012G060' => 'atr',
	'ATR0026G029' => 'atr',
	'ATR0193G043' => 'atr',
	'ATR0561G076' => 'atr',
	'ATR0561G181' => 'atr',
	'ATR0568G014' => 'atr',
	'ATR0568G114' => 'atr',
	'ATR0620G039' => 'atr',
	'ATR0629G125' => 'atr',
	'ATR0661G583' => 'atr',
	'ATR0686G019' => 'atr',
	'ATR0693G232' => 'atr',
	'ATR0697G104' => 'atr',
	'ATR0789G146' => 'atr',
	'ATR0794G066' => 'atr',
	'ATR1127G127' => 'atr',
	'ATR1131G040' => 'atr',
	'ATR1134G004' => 'atr',
	'ATR1134G095' => 'atr',
	'ATR1152G110' => 'atr',
	'ATR1153G065' => 'atr',
	'Atru.chr3.2296' => 'acertr',
	'AUR62000692' => 'cqu',
	'AUR62001473' => 'cqu',
	'AUR62001812' => 'cqu',
	'AUR62002706' => 'cqu',
	'AUR62003904' => 'cqu',
	'AUR62003905' => 'cqu',
	'AUR62004840' => 'cqu',
	'AUR62005160' => 'cqu',
	'AUR62005604' => 'cqu',
	'AUR62005891' => 'cqu',
	'AUR62007290' => 'cqu',
	'AUR62007502' => 'cqu',
	'AUR62007923' => 'cqu',
	'AUR62009972' => 'cqu',
	'AUR62010488' => 'cqu',
	'AUR62010643' => 'cqu',
	'AUR62012637' => 'cqu',
	'AUR62013492' => 'cqu',
	'AUR62014239' => 'cqu',
	'AUR62014878' => 'cqu',
	'AUR62015857' => 'cqu',
	'AUR62016224' => 'cqu',
	'AUR62017430' => 'cqu',
	'AUR62017467' => 'cqu',
	'AUR62018234' => 'cqu',
	'AUR62019060' => 'cqu',
	'AUR62019607' => 'cqu',
	'AUR62019661' => 'cqu',
	'AUR62022775' => 'cqu',
	'AUR62023603' => 'cqu',
	'AUR62024563' => 'cqu',
	'AUR62026199' => 'cqu',
	'AUR62026905' => 'cqu',
	'AUR62028639' => 'cqu',
	'AUR62029168' => 'cqu',
	'AUR62029551' => 'cqu',
	'AUR62029860' => 'cqu',
	'AUR62030164' => 'cqu',
	'AUR62031208' => 'cqu',
	'AUR62031287' => 'cqu',
	'AUR62031817' => 'cqu',
	'AUR62032126' => 'cqu',
	'AUR62032358' => 'cqu',
	'AUR62032884' => 'cqu',
	'AUR62032892' => 'cqu',
	'AUR62033082' => 'cqu',
	'AUR62033100' => 'cqu',
	'AUR62033255' => 'cqu',
	'AUR62033698' => 'cqu',
	'AUR62033757' => 'cqu',
	'AUR62034760' => 'cqu',
	'AUR62034860' => 'cqu',
	'AUR62035179' => 'cqu',
	'AUR62035881' => 'cqu',
	'AUR62036824' => 'cqu',
	'AUR62036876' => 'cqu',
	'AUR62037319' => 'cqu',
	'AUR62037362' => 'cqu',
	'AUR62037541' => 'cqu',
	'AUR62037853' => 'cqu',
	'AUR62038299' => 'cqu',
	'AUR62038563' => 'cqu',
	'AUR62038564' => 'cqu',
	'AUR62038594' => 'cqu',
	'AUR62038792' => 'cqu',
	'AUR62038947' => 'cqu',
	'AUR62039030' => 'cqu',
	'AUR62039231' => 'cqu',
	'AUR62039452' => 'cqu',
	'AUR62040334' => 'cqu',
	'AUR62040869' => 'cqu',
	'AUR62040870' => 'cqu',
	'AUR62040916' => 'cqu',
	'AUR62041199' => 'cqu',
	'AUR62041334' => 'cqu',
	'AUR62041608' => 'cqu',
	'AUR62041609' => 'cqu',
	'AUR62041833' => 'cqu',
	'AUR62041834' => 'cqu',
	'AUR62042054' => 'cqu',
	'AUR62042134' => 'cqu',
	'AUR62042236' => 'cqu',
	'AUR62042281' => 'cqu',
	'AUR62042593' => 'cqu',
	'AUR62042653' => 'cqu',
	'AUR62043025' => 'cqu',
	'AUR62043026' => 'cqu',
	'AUR62043063' => 'cqu',
	'AUR62043091' => 'cqu',
	'AUR62043320' => 'cqu',
	'BolC5t32558H' => 'bol',
	'CAN.G1036.12' => 'can',
	'CAN.G1432.23' => 'can',
	'CAN.G159.19' => 'can',
	'CAN.G4114.1' => 'can',
	'CAN.G492.85' => 'can',
	'CAN.G500.95' => 'can',
	'CAN.G93.31' => 'can',
	'CiPaw.04G054900' => 'cil',
	'CiPaw.05G045400' => 'cil',
	'CiPaw.15G094100' => 'cil',
	'ClCG00G000700' => 'cla',
	'ClCG00G000780' => 'cla',
	'ClCG01G012280' => 'cla',
	'ClCG02G006140' => 'cla',
	'ClCG02G009810' => 'cla',
	'ClCG03G010170' => 'cla',
	'ClCG03G010260' => 'cla',
	'ClCG04G000770' => 'cla',
	'ClCG05G013980' => 'cla',
	'ClCG06G009110' => 'cla',
	'ClCG06G009120' => 'cla',
	'ClCG08G002190' => 'cla',
	'ClCG09G013830' => 'cla',
	'ClCG10G006760' => 'cla',
	'ClCG11G007310' => 'cla',
	'COL.COLO4_16141' => 'col',
	'Cpa.g.sc202.2' => 'cpa',
	'Cpa.g.sc76.18' => 'cpa',
	'CsaV3_1G031080' => 'csa',
	'CsaV3_4G011870' => 'csa',
	'CsaV3_4G014860' => 'csa',
	'CsaV3_4G021860' => 'csa',
	'CsaV3_6G009880' => 'csa',
	'CsaV3_7G021240' => 'csa',
	'CsaV3_UNG240600' => 'csa',
	'CSS0003516' => 'camsi',
	'CSS0013023' => 'camsi',
	'CSS0017680' => 'camsi',
	'CSS0018551' => 'camsi',
	'CSS0026792' => 'camsi',
	'CSS0028271' => 'camsi',
	'CSS0033603' => 'camsi',
	'CSS0040789' => 'camsi',
	'CSS0045068' => 'camsi',
	'CSS0045803' => 'camsi',
	'Dinv10528' => 'din',
	'Duzib116G0875' => 'dzi',
	'Duzib128G0055' => 'dzi',
	'EL10Ac1g02377' => 'bvu',
	'EL10Ac1g02378' => 'bvu',
	'EL10Ac2g03486' => 'bvu',
	'EL10Ac2g03487' => 'bvu',
	'EL10Ac3g05722' => 'bvu',
	'EL10Ac3g06186' => 'bvu',
	'EL10Ac5g11258' => 'bvu',
	'EL10Ac6g13831' => 'bvu',
	'EL10Ac6g14162' => 'bvu',
	'EL10Ac6g14316' => 'bvu',
	'EL10Ac6g14317' => 'bvu',
	'EL10Ac6g14588' => 'bvu',
	'EL10Ac7g16302' => 'bvu',
	'EL10Ac7g16543' => 'bvu',
	'EL10Ac8g18762' => 'bvu',
	'EL10Ac9g20847' => 'bvu',
	'EL10As7g23731' => 'bvu',
	'EL10As7g23732' => 'bvu',
	'FvH4_1g23713' => 'fve',
	'FvH4_2g00261' => 'fve',
	'FvH4_2g00262' => 'fve',
	'FvH4_2g15681' => 'fve',
	'FvH4_2g17851' => 'fve',
	'FvH4_3g10531' => 'fve',
	'FvH4_3g33536' => 'fve',
	'FvH4_4g03471' => 'fve',
	'FvH4_4g19351' => 'fve',
	'FvH4_4g34281' => 'fve',
	'FvH4_5g03811' => 'fve',
	'FvH4_5g03812' => 'fve',
	'FvH4_5g11822' => 'fve',
	'FvH4_5g31701' => 'fve',
	'FvH4_6g12161' => 'fve',
	'FvH4_6g15222' => 'fve',
	'FvH4_6g15223' => 'fve',
	'FvH4_6g19301' => 'fve',
	'FvH4_6g33011' => 'fve',
	'FvH4_6g50161' => 'fve',
	'FvH4_7g04123' => 'fve',
	'FvH4_c7g00010' => 'fve',
	'Gorai.012G165300' => 'gra',
	'HanXRQChr00c0452g0574871' => 'han',
	'HanXRQChr01g0029471' => 'han',
	'HanXRQChr05g0133501' => 'han',
	'HanXRQChr10g0280141' => 'han',
	'HanXRQChr10g0280631' => 'han',
	'HanXRQChr13g0409991' => 'han',
	'HanXRQChr15g0468361' => 'han',
	'Hma1.2p1_0021F.1_g014270' => 'hma',
	'Hma1.2p1_0026F.1_g016730' => 'hma',
	'Hma1.2p1_0177F.1_g077930' => 'hma',
	'Hma1.2p1_0370F.1_g137540' => 'hma',
	'Hma1.2p1_0637F.1_g193600' => 'hma',
	'Hma1.2p1_1045F.1_g251360' => 'hma',
	'Hma1.2p1_1168F.1_g263120' => 'hma',
	'Hma1.2p1_1640F.1_g295040' => 'hma',
	'Hma1.2p1_2467F.1_g322660' => 'hma',
	'Hund01785' => 'sun',
	'Hund04739' => 'sun',
	'Hund07717' => 'sun',
	'Hund08060' => 'sun',
	'Hund08734' => 'sun',
	'Hund10876' => 'sun',
	'Hund14991' => 'sun',
	'Hund15051' => 'sun',
	'Hund15082' => 'sun',
	'Hund17998' => 'sun',
	'Hund18526' => 'sun',
	'Hund19828' => 'sun',
	'Hund23384' => 'sun',
	'Hund26399' => 'sun',
	'Hund28766' => 'sun',
	'Hund28768' => 'sun',
	'Lj1A487G33' => 'lonja',
	'Lj1A487G34' => 'lonja',
	'Lj1A489G15' => 'lonja',
	'Lj1C1113T3' => 'lonja',
	'Lj1C3T4' => 'lonja',
	'Lj1C763G4' => 'lonja',
	'Lj1P195T27' => 'lonja',
	'Lj1P573T13' => 'lonja',
	'Lj1P895T45' => 'lonja',
	'Lj1P995G28' => 'lonja',
	'Lj2A1125G46' => 'lonja',
	'Lj2C116T7' => 'lonja',
	'Lj2P295T30' => 'lonja',
	'Lj2P476T23' => 'lonja',
	'Lj2P603T27' => 'lonja',
	'Lj2P609T17' => 'lonja',
	'Lj2P727T24' => 'lonja',
	'Lj3C273T2' => 'lonja',
	'Lj3C644G3' => 'lonja',
	'Lj3C644G4' => 'lonja',
	'Lj3P463T4' => 'lonja',
	'Lj3P545T31' => 'lonja',
	'Lj3P820T55' => 'lonja',
	'Lj4C260T12' => 'lonja',
	'Lj4C714G8' => 'lonja',
	'Lj4P131T14' => 'lonja',
	'Lj4P131T15' => 'lonja',
	'Lj5C102G24' => 'lonja',
	'Lj5P491T3' => 'lonja',
	'Lj5P564T12' => 'lonja',
	'Lj5P786T11' => 'lonja',
	'Lj6C97T3' => 'lonja',
	'Lj8P523T19' => 'lonja',
	'Lj9A24G30' => 'lonja',
	'Lj9A424G33' => 'lonja',
	'Lj9C219G10' => 'lonja',
	'Lj9P219T12' => 'lonja',
	'Lj9P705T22' => 'lonja',
	'Lju114C4T7' => 'lonja',
	'Lju1220C5G5' => 'lonja',
	'Lju2092C1G1' => 'lonja',
	'Lju2092C1T0' => 'lonja',
	'Lju225C6G6' => 'lonja',
	'Lju427C2T0' => 'lonja',
	'Lju50C9T4' => 'lonja',
	'Lju926C12T2' => 'lonja',
	'Manes.06G126602' => 'mes',
	'Manes.13G002614' => 'mes',
	'Manes.15G192966' => 'mes',
	'Manes.17G001483' => 'mes',
	'Manes.17G022547' => 'mes',
	'Manes.18G042825' => 'mes',
	'Manes.S026816' => 'mes',
	'Manes.S027416' => 'mes',
	'MBI02_g15234_MAGBIO' => 'mbi',
	'MBI16_g35584_MAGBIO' => 'mbi',
	'MELO3C008948.2' => 'cme',
	'MELO3C010395.2' => 'cme',
	'MELO3C010396.2' => 'cme',
	'MELO3C015759.2' => 'cme',
	'MELO3C022607.2' => 'cme',
	'MELO3C028897.2' => 'cme',
	'Oeu000188.1' => 'oeu',
	'Oeu002226.1' => 'oeu',
	'Oeu003087.1' => 'oeu',
	'Oeu003392.1' => 'oeu',
	'Oeu003523.1' => 'oeu',
	'Oeu003524.1' => 'oeu',
	'Oeu003528.1' => 'oeu',
	'Oeu003547.2' => 'oeu',
	'Oeu004677.1' => 'oeu',
	'Oeu005362.1' => 'oeu',
	'Oeu005833.1' => 'oeu',
	'Oeu005834.1' => 'oeu',
	'Oeu006751.1' => 'oeu',
	'Oeu007084.1' => 'oeu',
	'Oeu007264.1' => 'oeu',
	'Oeu008153.1' => 'oeu',
	'Oeu008228.1' => 'oeu',
	'Oeu008229.1' => 'oeu',
	'Oeu009580.1' => 'oeu',
	'Oeu010110.1' => 'oeu',
	'Oeu011704.1' => 'oeu',
	'Oeu011912.1' => 'oeu',
	'Oeu012057.1' => 'oeu',
	'Oeu012157.1' => 'oeu',
	'Oeu013775.1' => 'oeu',
	'Oeu013806.1' => 'oeu',
	'Oeu016457.1' => 'oeu',
	'Oeu016803.1' => 'oeu',
	'Oeu017243.2' => 'oeu',
	'Oeu017935.1' => 'oeu',
	'Oeu020246.2' => 'oeu',
	'Oeu020990.1' => 'oeu',
	'Oeu021941.1' => 'oeu',
	'Oeu021986.1' => 'oeu',
	'Oeu023578.1' => 'oeu',
	'Oeu024242.1' => 'oeu',
	'Oeu025087.1' => 'oeu',
	'Oeu025093.1' => 'oeu',
	'Oeu025412.1' => 'oeu',
	'Oeu025520.1' => 'oeu',
	'Oeu026473.1' => 'oeu',
	'Oeu027505.1' => 'oeu',
	'Oeu027530.1' => 'oeu',
	'Oeu027794.2' => 'oeu',
	'Oeu028951.1' => 'oeu',
	'Oeu029141.1' => 'oeu',
	'Oeu029231.4' => 'oeu',
	'Oeu029388.1' => 'oeu',
	'Oeu029673.1' => 'oeu',
	'Oeu029674.1' => 'oeu',
	'Oeu029748.1' => 'oeu',
	'Oeu030224.1' => 'oeu',
	'Oeu030243.1' => 'oeu',
	'Oeu030253.1' => 'oeu',
	'Oeu030414.1' => 'oeu',
	'Oeu030415.1' => 'oeu',
	'Oeu030472.1' => 'oeu',
	'Oeu031432.1' => 'oeu',
	'Oeu031697.1' => 'oeu',
	'Oeu032030.1' => 'oeu',
	'Oeu032031.1' => 'oeu',
	'Oeu032075.1' => 'oeu',
	'Oeu032737.1' => 'oeu',
	'Oeu033407.1' => 'oeu',
	'Oeu033485.1' => 'oeu',
	'Oeu034465.1' => 'oeu',
	'Oeu034951.1' => 'oeu',
	'Oeu036281.1' => 'oeu',
	'Oeu036931.1' => 'oeu',
	'Oeu036932.1' => 'oeu',
	'Oeu037340.1' => 'oeu',
	'Oeu037611.1' => 'oeu',
	'Oeu039205.1' => 'oeu',
	'Oeu039325.1' => 'oeu',
	'Oeu040999.1' => 'oeu',
	'Oeu041244.1' => 'oeu',
	'Oeu041682.1' => 'oeu',
	'Oeu041863.1' => 'oeu',
	'Oeu042345.1' => 'oeu',
	'Oeu042346.1' => 'oeu',
	'Oeu042671.1' => 'oeu',
	'Oeu043273.1' => 'oeu',
	'Oeu043573.1' => 'oeu',
	'Oeu044071.1' => 'oeu',
	'Oeu046813.1' => 'oeu',
	'Oeu048160.1' => 'oeu',
	'Oeu048162.1' => 'oeu',
	'Oeu048282.1' => 'oeu',
	'Oeu048297.1' => 'oeu',
	'Oeu048360.1' => 'oeu',
	'Oeu048565.1' => 'oeu',
	'Oeu049268.1' => 'oeu',
	'Oeu049465.1' => 'oeu',
	'Oeu049978.1' => 'oeu',
	'Oeu050628.1' => 'oeu',
	'Oeu050727.1' => 'oeu',
	'Oeu052065.1' => 'oeu',
	'Oeu052582.1' => 'oeu',
	'Oeu053090.1' => 'oeu',
	'Oeu053644.1' => 'oeu',
	'Oeu053713.1' => 'oeu',
	'Oeu055027.1' => 'oeu',
	'Oeu057741.1' => 'oeu',
	'Oeu058973.1' => 'oeu',
	'Oeu060366.1' => 'oeu',
	'Oeu061428.1' => 'oeu',
	'Oeu062087.1' => 'oeu',
	'Oeu062537.1' => 'oeu',
	'Oeu062538.1' => 'oeu',
	'Oeu064387.1' => 'oeu',
	'PGSC0003DMG400002344' => 'stu',
	'PGSC0003DMG400004046' => 'stu',
	'PGSC0003DMG400006418' => 'stu',
	'PGSC0003DMG400008410' => 'stu',
	'PGSC0003DMG400008620' => 'stu',
	'PGSC0003DMG400009504' => 'stu',
	'PGSC0003DMG400009845' => 'stu',
	'PGSC0003DMG400011177' => 'stu',
	'PGSC0003DMG400011629' => 'stu',
	'PGSC0003DMG400013586' => 'stu',
	'PGSC0003DMG400013599' => 'stu',
	'PGSC0003DMG400014534' => 'stu',
	'PGSC0003DMG400016055' => 'stu',
	'PGSC0003DMG400016736' => 'stu',
	'PGSC0003DMG400016866' => 'stu',
	'PGSC0003DMG400017701' => 'stu',
	'PGSC0003DMG400018448' => 'stu',
	'PGSC0003DMG400020751' => 'stu',
	'PGSC0003DMG400021088' => 'stu',
	'PGSC0003DMG400021387' => 'stu',
	'PGSC0003DMG400021640' => 'stu',
	'PGSC0003DMG400021704' => 'stu',
	'PGSC0003DMG400022155' => 'stu',
	'PGSC0003DMG400023544' => 'stu',
	'PGSC0003DMG400023564' => 'stu',
	'PGSC0003DMG400028558' => 'stu',
	'PGSC0003DMG400028618' => 'stu',
	'PGSC0003DMG400029149' => 'stu',
	'PGSC0003DMG400029979' => 'stu',
	'PGSC0003DMG400030069' => 'stu',
	'PGSC0003DMG400031272' => 'stu',
	'PGSC0003DMG400034656' => 'stu',
	'PGSC0003DMG400035151' => 'stu',
	'PGSC0003DMG400035741' => 'stu',
	'PGSC0003DMG400036100' => 'stu',
	'PGSC0003DMG400037683' => 'stu',
	'PGSC0003DMG400038046' => 'stu',
	'PGSC0003DMG400040121' => 'stu',
	'PGSC0003DMG400042113' => 'stu',
	'PGSC0003DMG400042218' => 'stu',
	'PGSC0003DMG400044188' => 'stu',
	'PGSC0003DMG400044323' => 'stu',
	'PGSC0003DMG400045014' => 'stu',
	'PGSC0003DMG400045177' => 'stu',
	'PGSC0003DMG400047199' => 'stu',
	'Potri.017G071366' => 'ptr',
	'RcHm_v2.0_Chr2g0137481' => 'rch',
	'Sc20g0003180' => 'sci',
	'SEGI_00305' => 'sgi',
	'SEGI_02246' => 'sgi',
	'SEGI_03696' => 'sgi',
	'SEGI_05490' => 'sgi',
	'SEGI_05682' => 'sgi',
	'SEGI_05900' => 'sgi',
	'SEGI_06517' => 'sgi',
	'SEGI_12587' => 'sgi',
	'SEGI_13129' => 'sgi',
	'SEGI_16935' => 'sgi',
	'SEGI_18008' => 'sgi',
	'SEGI_18224' => 'sgi',
	'SEGI_20188' => 'sgi',
	'SEGI_20772' => 'sgi',
	'SEGI_20842' => 'sgi',
	'SEGI_22270' => 'sgi',
	'SEGI_22705' => 'sgi',
	'SEGI_23638' => 'sgi',
	'SEGI_23928' => 'sgi',
	'SEGI_24790' => 'sgi',
	'SEGI_28421' => 'sgi',
	'SEGI_28832' => 'sgi',
	'SEGI_29884' => 'sgi',
	'SEGI_30829' => 'sgi',
	'SEGI_35046' => 'sgi',
	'SEGI_35582' => 'sgi',
	'SEGI_37882' => 'sgi',
	'SEGI_39680' => 'sgi',
	'SEGI_40069' => 'sgi',
	'SEGI_40087' => 'sgi',
	'SEGI_41606' => 'sgi',
	'SGA_v2.0_scaffold50G18578' => 'sas',
	'SHI00293' => 'shi',
	'SHI00389' => 'shi',
	'SHI00445' => 'shi',
	'SHI01000' => 'shi',
	'SHI01503' => 'shi',
	'SHI01718' => 'shi',
	'SHI03454' => 'shi',
	'SHI03493' => 'shi',
	'SHI03494' => 'shi',
	'SHI03628' => 'shi',
	'SHI04457' => 'shi',
	'SHI04691' => 'shi',
	'SHI04829' => 'shi',
	'SHI05225' => 'shi',
	'SHI06326' => 'shi',
	'SHI06505' => 'shi',
	'SHI06770' => 'shi',
	'SHI07388' => 'shi',
	'SHI07582' => 'shi',
	'SHI07583' => 'shi',
	'SHI08271' => 'shi',
	'SHI10619' => 'shi',
	'SHI10892' => 'shi',
	'SHI10910' => 'shi',
	'SHI10911' => 'shi',
	'SHI14326' => 'shi',
	'SHI14681' => 'shi',
	'SHI15017' => 'shi',
	'SHI15096' => 'shi',
	'SHI15120' => 'shi',
	'SHI15274' => 'shi',
	'SHI16232' => 'shi',
	'SHI16811' => 'shi',
	'SHI17386' => 'shi',
	'SHI17926' => 'shi',
	'SHI18293' => 'shi',
	'SHI20489' => 'shi',
	'SHI20658' => 'shi',
	'SHI20663' => 'shi',
	'SHI21566' => 'shi',
	'SHI22547' => 'shi',
	'SHI22708' => 'shi',
	'SHI22709' => 'shi',
	'SHI22878' => 'shi',
	'SHI22879' => 'shi',
	'SHI23024' => 'shi',
	'SHI25053' => 'shi',
	'SHI25076' => 'shi',
	'SHI25116' => 'shi',
	'SHI25381' => 'shi',
	'SHI25535' => 'shi',
	'SHI25740' => 'shi',
	'SHI25991' => 'shi',
	'SHI26344' => 'shi',
	'SHI26345' => 'shi',
	'SHI27097' => 'shi',
	'SHI27140' => 'shi',
	'SHI27178' => 'shi',
	'SHI27207' => 'shi',
	'SHI27225' => 'shi',
	'SHI27734' => 'shi',
	'SHI27806' => 'shi',
	'SHI28576' => 'shi',
	'SHI29081' => 'shi',
	'SHI30038' => 'shi',
	'SHI30394' => 'shi',
	'SHI30652' => 'shi',
	'SHI32154' => 'shi',
	'SHI32205' => 'shi',
	'SHI32365' => 'shi',
	'SHI32439' => 'shi',
	'SHI32505' => 'shi',
	'SHI32626' => 'shi',
	'SHI32714' => 'shi',
	'SHI32715' => 'shi',
	'SHI32716' => 'shi',
	'SHI33118' => 'shi',
	'SHI33318' => 'shi',
	'SHI33373' => 'shi',
	'SHI33512' => 'shi',
	'SHI33625' => 'shi',
	'SHI34327' => 'shi',
	'SHI35604' => 'shi',
	'SHI36119' => 'shi',
	'SHI36120' => 'shi',
	'SHI44959' => 'shi',
	'SHI46406' => 'shi',
	'SHI48191' => 'shi',
	'SHI48192' => 'shi',
	'Solyc10g150111.1' => 'sly',
	'Solyc12g062340.2' => 'sly',
	'Sopen00g001750' => 'spe',
	'Sopen00g001820' => 'spe',
	'Sopen00g001830' => 'spe',
	'Sopen00g001890' => 'spe',
	'Sopen00g002240' => 'spe',
	'Sopen00g003950' => 'spe',
	'Sopen00g004130' => 'spe',
	'Sopen00g004810' => 'spe',
	'Sopen00g005120' => 'spe',
	'Sopen00g005190' => 'spe',
	'Sopen00g007000' => 'spe',
	'Sopen00g007210' => 'spe',
	'Sopen00g012840' => 'spe',
	'Sopen00g013060' => 'spe',
	'Sopen00g013610' => 'spe',
	'Sopen00g013630' => 'spe',
	'Sopen01g004610' => 'spe',
	'Sopen01g007660' => 'spe',
	'Sopen01g007750' => 'spe',
	'Sopen01g007760' => 'spe',
	'Sopen01g007770' => 'spe',
	'Sopen01g007860' => 'spe',
	'Sopen01g009130' => 'spe',
	'Sopen01g009820' => 'spe',
	'Sopen01g011240' => 'spe',
	'Sopen01g012740' => 'spe',
	'Sopen01g013840' => 'spe',
	'Sopen01g013850' => 'spe',
	'Sopen01g016140' => 'spe',
	'Sopen01g016150' => 'spe',
	'Sopen01g016830' => 'spe',
	'Sopen01g017260' => 'spe',
	'Sopen01g019000' => 'spe',
	'Sopen01g019690' => 'spe',
	'Sopen01g022160' => 'spe',
	'Sopen01g024000' => 'spe',
	'Sopen01g024670' => 'spe',
	'Sopen01g024770' => 'spe',
	'Sopen01g024900' => 'spe',
	'Sopen01g025130' => 'spe',
	'Sopen01g026370' => 'spe',
	'Sopen01g041640' => 'spe',
	'Sopen01g046930' => 'spe',
	'Sopen02g001360' => 'spe',
	'Sopen02g002010' => 'spe',
	'Sopen02g003600' => 'spe',
	'Sopen02g003730' => 'spe',
	'Sopen02g005430' => 'spe',
	'Sopen02g005510' => 'spe',
	'Sopen02g006840' => 'spe',
	'Sopen02g007390' => 'spe',
	'Sopen02g007420' => 'spe',
	'Sopen02g007540' => 'spe',
	'Sopen02g007920' => 'spe',
	'Sopen02g008960' => 'spe',
	'Sopen02g009450' => 'spe',
	'Sopen02g009460' => 'spe',
	'Sopen02g011320' => 'spe',
	'Sopen02g012680' => 'spe',
	'Sopen02g018090' => 'spe',
	'Sopen02g022140' => 'spe',
	'Sopen03g010330' => 'spe',
	'Sopen03g013130' => 'spe',
	'Sopen03g013180' => 'spe',
	'Sopen03g013230' => 'spe',
	'Sopen03g014110' => 'spe',
	'Sopen03g015260' => 'spe',
	'Sopen03g015790' => 'spe',
	'Sopen03g018360' => 'spe',
	'Sopen03g024470' => 'spe',
	'Sopen03g026800' => 'spe',
	'Sopen04g003180' => 'spe',
	'Sopen04g008260' => 'spe',
	'Sopen04g010320' => 'spe',
	'Sopen04g011020' => 'spe',
	'Sopen04g011200' => 'spe',
	'Sopen04g011280' => 'spe',
	'Sopen04g021910' => 'spe',
	'Sopen04g023870' => 'spe',
	'Sopen05g009880' => 'spe',
	'Sopen05g011580' => 'spe',
	'Sopen05g012230' => 'spe',
	'Sopen05g012500' => 'spe',
	'Sopen05g012560' => 'spe',
	'Sopen05g012570' => 'spe',
	'Sopen05g012760' => 'spe',
	'Sopen05g013710' => 'spe',
	'Sopen05g015050' => 'spe',
	'Sopen05g026090' => 'spe',
	'Sopen05g028020' => 'spe',
	'Sopen05g028610' => 'spe',
	'Sopen05g029300' => 'spe',
	'Sopen06g005520' => 'spe',
	'Sopen06g006750' => 'spe',
	'Sopen06g008160' => 'spe',
	'Sopen06g009120' => 'spe',
	'Sopen06g013550' => 'spe',
	'Sopen06g015340' => 'spe',
	'Sopen06g018330' => 'spe',
	'Sopen06g021630' => 'spe',
	'Sopen06g021650' => 'spe',
	'Sopen07g006730' => 'spe',
	'Sopen07g008690' => 'spe',
	'Sopen07g008700' => 'spe',
	'Sopen07g008720' => 'spe',
	'Sopen07g008870' => 'spe',
	'Sopen07g009400' => 'spe',
	'Sopen07g009410' => 'spe',
	'Sopen07g009470' => 'spe',
	'Sopen07g009540' => 'spe',
	'Sopen07g011060' => 'spe',
	'Sopen07g011110' => 'spe',
	'Sopen07g011820' => 'spe',
	'Sopen07g013260' => 'spe',
	'Sopen07g014740' => 'spe',
	'Sopen07g015160' => 'spe',
	'Sopen07g015230' => 'spe',
	'Sopen07g016240' => 'spe',
	'Sopen07g017200' => 'spe',
	'Sopen07g017810' => 'spe',
	'Sopen07g019030' => 'spe',
	'Sopen07g020430' => 'spe',
	'Sopen07g021010' => 'spe',
	'Sopen07g021340' => 'spe',
	'Sopen07g022950' => 'spe',
	'Sopen07g027860' => 'spe',
	'Sopen08g007820' => 'spe',
	'Sopen08g009330' => 'spe',
	'Sopen08g012310' => 'spe',
	'Sopen08g012560' => 'spe',
	'Sopen08g014040' => 'spe',
	'Sopen08g014650' => 'spe',
	'Sopen08g017020' => 'spe',
	'Sopen08g018300' => 'spe',
	'Sopen08g020530' => 'spe',
	'Sopen09g008590' => 'spe',
	'Sopen09g008780' => 'spe',
	'Sopen09g011540' => 'spe',
	'Sopen09g011920' => 'spe',
	'Sopen09g014170' => 'spe',
	'Sopen09g016520' => 'spe',
	'Sopen09g021030' => 'spe',
	'Sopen09g023110' => 'spe',
	'Sopen09g024750' => 'spe',
	'Sopen09g025230' => 'spe',
	'Sopen09g025600' => 'spe',
	'Sopen09g034660' => 'spe',
	'Sopen10g006700' => 'spe',
	'Sopen10g009130' => 'spe',
	'Sopen10g009140' => 'spe',
	'Sopen10g009560' => 'spe',
	'Sopen10g010340' => 'spe',
	'Sopen10g011040' => 'spe',
	'Sopen10g013650' => 'spe',
	'Sopen10g014130' => 'spe',
	'Sopen10g014140' => 'spe',
	'Sopen10g014760' => 'spe',
	'Sopen10g015080' => 'spe',
	'Sopen10g015830' => 'spe',
	'Sopen10g018240' => 'spe',
	'Sopen10g018300' => 'spe',
	'Sopen10g018350' => 'spe',
	'Sopen10g018460' => 'spe',
	'Sopen10g018670' => 'spe',
	'Sopen10g019040' => 'spe',
	'Sopen10g019330' => 'spe',
	'Sopen10g019340' => 'spe',
	'Sopen10g019360' => 'spe',
	'Sopen10g019370' => 'spe',
	'Sopen10g020620' => 'spe',
	'Sopen10g021550' => 'spe',
	'Sopen10g022160' => 'spe',
	'Sopen10g023540' => 'spe',
	'Sopen10g023570' => 'spe',
	'Sopen10g023580' => 'spe',
	'Sopen10g023600' => 'spe',
	'Sopen10g023620' => 'spe',
	'Sopen10g023650' => 'spe',
	'Sopen10g024800' => 'spe',
	'Sopen10g026170' => 'spe',
	'Sopen11g007790' => 'spe',
	'Sopen11g010170' => 'spe',
	'Sopen11g010580' => 'spe',
	'Sopen11g013420' => 'spe',
	'Sopen11g016330' => 'spe',
	'Sopen11g017010' => 'spe',
	'Sopen11g018110' => 'spe',
	'Sopen11g018960' => 'spe',
	'Sopen11g019000' => 'spe',
	'Sopen11g019970' => 'spe',
	'Sopen11g020340' => 'spe',
	'Sopen11g020970' => 'spe',
	'Sopen12g008510' => 'spe',
	'Sopen12g008910' => 'spe',
	'Sopen12g009010' => 'spe',
	'Sopen12g009120' => 'spe',
	'Sopen12g009340' => 'spe',
	'Sopen12g009580' => 'spe',
	'Sopen12g010190' => 'spe',
	'Sopen12g010320' => 'spe',
	'Sopen12g010370' => 'spe',
	'Sopen12g012140' => 'spe',
	'Sopen12g012700' => 'spe',
	'Sopen12g013490' => 'spe',
	'Sopen12g014290' => 'spe',
	'Sopen12g015060' => 'spe',
	'Sopen12g015610' => 'spe',
	'Sopen12g018380' => 'spe',
	'Sopen12g019150' => 'spe',
	'Sopen12g020560' => 'spe',
	'Sopen12g023320' => 'spe',
	'Sp3g24190' => 'spa',
	'Sp4g07270' => 'spa',
	'Sp4g07530' => 'spa',
	'Sp4g07670' => 'spa',
	'Sp6g09360' => 'spa',
	'Sp7g04180' => 'spa',
	'Sp7g04980' => 'spa',
	'Sp7g08200' => 'spa',
	'Sp7g09660' => 'spa',
	'SpUn0081_0010' => 'spa',
	'THA.LOC104803417' => 'tha',
	'THA.LOC104817059' => 'tha',
	'Thecc.01G188700' => 'tca',
	'Thecc.05G106700' => 'tca',
	'Thecc.06G068800' => 'tca',
	'Thecc.07G189100' => 'tca',
	'Thecc.09G172800' => 'tca',
	'Thhalv10023044m.g' => 'esa',
	'Thhalv10023881m.g' => 'esa',
	'Thhalv10024067m.g' => 'esa'
)
$gf_id = 'HOM05D000691'
$gf_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$gf_types_configuration = array(
	'HOMFAM' => array(
		'order' => '1',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	),
	'ORTHOFAM' => array(
		'order' => '2',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	)
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$allow_async_use = true
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D000691'
)
$data_identifier = 'HOM05D000691'
$data_type = 'gf_id'
$species_gene_counts = array(
	'amhyb' => (int) 18,
	'aly' => (int) 1,
	'atr' => (int) 21,
	'acertr' => (int) 1,
	'cqu' => (int) 90,
	'bol' => (int) 1,
	'can' => (int) 7,
	'cil' => (int) 3,
	'cla' => (int) 15,
	'col' => (int) 1,
	'cpa' => (int) 2,
	'csa' => (int) 7,
	'camsi' => (int) 10,
	'din' => (int) 1,
	'dzi' => (int) 2,
	'bvu' => (int) 18,
	'fve' => (int) 22,
	'gra' => (int) 1,
	'han' => (int) 7,
	'hma' => (int) 9,
	'sun' => (int) 16,
	'lonja' => (int) 46,
	'mes' => (int) 8,
	'mbi' => (int) 2,
	'cme' => (int) 6,
	'oeu' => (int) 110,
	'stu' => (int) 45,
	'ptr' => (int) 1,
	'rch' => (int) 1,
	'sci' => (int) 1,
	'sgi' => (int) 31,
	'sas' => (int) 1,
	'shi' => (int) 89,
	'sly' => (int) 2,
	'spe' => (int) 211,
	'spa' => (int) 10,
	'tha' => (int) 2,
	'tca' => (int) 5,
	'esa' => (int) 3
)
$gf_gene_species = 'esa'
$gf_gene_id = 'Thhalv10024067m.g'
$species_info = array(
	'species' => 'rch',
	'common_name' => 'Rosa chinensis',
	'tax_id' => '74649',
	'version' => 'v2.0'
)
$local_species = 'rch'
$disabled = ''
$selected = ''
$num_hits = (int) 0
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Analysis/custom_tree_creation.ctp, line 27
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933

Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]
Code Context
        $disabled    = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";

        $selected    = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";

        $num_hits    = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D000691',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '827',
		'num_species' => '39'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'gf_genes' => array(
		'Ah.01g012340' => 'amhyb',
		'Ah.01g013530' => 'amhyb',
		'Ah.03g143080' => 'amhyb',
		'Ah.06g186750' => 'amhyb',
		'Ah.06g186800' => 'amhyb',
		'Ah.07g200050' => 'amhyb',
		'Ah.08g209110' => 'amhyb',
		'Ah.09g229600' => 'amhyb',
		'Ah.09g229610' => 'amhyb',
		'Ah.10g026490' => 'amhyb',
		'Ah.12g065350' => 'amhyb',
		'Ah.13g069310' => 'amhyb',
		'Ah.14g080130' => 'amhyb',
		'Ah.14g081130' => 'amhyb',
		'Ah.14g081140' => 'amhyb',
		'Ah.16g109160' => 'amhyb',
		'Ah.16g109170' => 'amhyb',
		'Ah.16g109370' => 'amhyb',
		'AL3G47720' => 'aly',
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		'SEGI_05900' => 'sgi',
		'SEGI_06517' => 'sgi',
		'SEGI_12587' => 'sgi',
		'SEGI_13129' => 'sgi',
		'SEGI_16935' => 'sgi',
		'SEGI_18008' => 'sgi',
		'SEGI_18224' => 'sgi',
		'SEGI_20188' => 'sgi',
		'SEGI_20772' => 'sgi',
		'SEGI_20842' => 'sgi',
		'SEGI_22270' => 'sgi',
		'SEGI_22705' => 'sgi',
		'SEGI_23638' => 'sgi',
		'SEGI_23928' => 'sgi',
		'SEGI_24790' => 'sgi',
		'SEGI_28421' => 'sgi',
		'SEGI_28832' => 'sgi',
		'SEGI_29884' => 'sgi',
		'SEGI_30829' => 'sgi',
		'SEGI_35046' => 'sgi',
		'SEGI_35582' => 'sgi',
		'SEGI_37882' => 'sgi',
		'SEGI_39680' => 'sgi',
		'SEGI_40069' => 'sgi',
		'SEGI_40087' => 'sgi',
		'SEGI_41606' => 'sgi',
		'SGA_v2.0_scaffold50G18578' => 'sas',
		'SHI00293' => 'shi',
		'SHI00389' => 'shi',
		'SHI00445' => 'shi',
		'SHI01000' => 'shi',
		'SHI01503' => 'shi',
		'SHI01718' => 'shi',
		'SHI03454' => 'shi',
		'SHI03493' => 'shi',
		'SHI03494' => 'shi',
		'SHI03628' => 'shi',
		'SHI04457' => 'shi',
		'SHI04691' => 'shi',
		'SHI04829' => 'shi',
		'SHI05225' => 'shi',
		'SHI06326' => 'shi',
		'SHI06505' => 'shi',
		'SHI06770' => 'shi',
		'SHI07388' => 'shi',
		'SHI07582' => 'shi',
		'SHI07583' => 'shi',
		'SHI08271' => 'shi',
		'SHI10619' => 'shi',
		'SHI10892' => 'shi',
		'SHI10910' => 'shi',
		'SHI10911' => 'shi',
		'SHI14326' => 'shi',
		'SHI14681' => 'shi',
		'SHI15017' => 'shi',
		'SHI15096' => 'shi',
		'SHI15120' => 'shi',
		'SHI15274' => 'shi',
		'SHI16232' => 'shi',
		'SHI16811' => 'shi',
		'SHI17386' => 'shi',
		'SHI17926' => 'shi',
		'SHI18293' => 'shi',
		'SHI20489' => 'shi',
		'SHI20658' => 'shi',
		'SHI20663' => 'shi',
		'SHI21566' => 'shi',
		'SHI22547' => 'shi',
		'SHI22708' => 'shi',
		'SHI22709' => 'shi',
		'SHI22878' => 'shi',
		'SHI22879' => 'shi',
		'SHI23024' => 'shi',
		'SHI25053' => 'shi',
		'SHI25076' => 'shi',
		'SHI25116' => 'shi',
		'SHI25381' => 'shi',
		'SHI25535' => 'shi',
		'SHI25740' => 'shi',
		'SHI25991' => 'shi',
		'SHI26344' => 'shi',
		'SHI26345' => 'shi',
		'SHI27097' => 'shi',
		'SHI27140' => 'shi',
		'SHI27178' => 'shi',
		'SHI27207' => 'shi',
		'SHI27225' => 'shi',
		'SHI27734' => 'shi',
		'SHI27806' => 'shi',
		'SHI28576' => 'shi',
		'SHI29081' => 'shi',
		'SHI30038' => 'shi',
		'SHI30394' => 'shi',
		'SHI30652' => 'shi',
		'SHI32154' => 'shi',
		'SHI32205' => 'shi',
		'SHI32365' => 'shi',
		'SHI32439' => 'shi',
		'SHI32505' => 'shi',
		'SHI32626' => 'shi',
		'SHI32714' => 'shi',
		'SHI32715' => 'shi',
		'SHI32716' => 'shi',
		'SHI33118' => 'shi',
		'SHI33318' => 'shi',
		'SHI33373' => 'shi',
		'SHI33512' => 'shi',
		'SHI33625' => 'shi',
		'SHI34327' => 'shi',
		'SHI35604' => 'shi',
		'SHI36119' => 'shi',
		'SHI36120' => 'shi',
		'SHI44959' => 'shi',
		'SHI46406' => 'shi',
		'SHI48191' => 'shi',
		'SHI48192' => 'shi',
		'Solyc10g150111.1' => 'sly',
		'Solyc12g062340.2' => 'sly',
		'Sopen00g001750' => 'spe',
		'Sopen00g001820' => 'spe',
		'Sopen00g001830' => 'spe',
		'Sopen00g001890' => 'spe',
		'Sopen00g002240' => 'spe',
		'Sopen00g003950' => 'spe',
		'Sopen00g004130' => 'spe',
		'Sopen00g004810' => 'spe',
		'Sopen00g005120' => 'spe',
		'Sopen00g005190' => 'spe',
		'Sopen00g007000' => 'spe',
		'Sopen00g007210' => 'spe',
		'Sopen00g012840' => 'spe',
		'Sopen00g013060' => 'spe',
		'Sopen00g013610' => 'spe',
		'Sopen00g013630' => 'spe',
		'Sopen01g004610' => 'spe',
		'Sopen01g007660' => 'spe',
		'Sopen01g007750' => 'spe',
		'Sopen01g007760' => 'spe',
		'Sopen01g007770' => 'spe',
		'Sopen01g007860' => 'spe',
		'Sopen01g009130' => 'spe',
		'Sopen01g009820' => 'spe',
		'Sopen01g011240' => 'spe',
		'Sopen01g012740' => 'spe',
		'Sopen01g013840' => 'spe',
		'Sopen01g013850' => 'spe',
		'Sopen01g016140' => 'spe',
		'Sopen01g016150' => 'spe',
		'Sopen01g016830' => 'spe',
		'Sopen01g017260' => 'spe',
		'Sopen01g019000' => 'spe',
		'Sopen01g019690' => 'spe',
		'Sopen01g022160' => 'spe',
		'Sopen01g024000' => 'spe',
		'Sopen01g024670' => 'spe',
		'Sopen01g024770' => 'spe',
		'Sopen01g024900' => 'spe',
		'Sopen01g025130' => 'spe',
		'Sopen01g026370' => 'spe',
		'Sopen01g041640' => 'spe',
		'Sopen01g046930' => 'spe',
		'Sopen02g001360' => 'spe',
		'Sopen02g002010' => 'spe',
		'Sopen02g003600' => 'spe',
		'Sopen02g003730' => 'spe',
		'Sopen02g005430' => 'spe',
		'Sopen02g005510' => 'spe',
		'Sopen02g006840' => 'spe',
		'Sopen02g007390' => 'spe',
		'Sopen02g007420' => 'spe',
		'Sopen02g007540' => 'spe',
		'Sopen02g007920' => 'spe',
		'Sopen02g008960' => 'spe',
		'Sopen02g009450' => 'spe',
		'Sopen02g009460' => 'spe',
		'Sopen02g011320' => 'spe',
		'Sopen02g012680' => 'spe',
		'Sopen02g018090' => 'spe',
		'Sopen02g022140' => 'spe',
		'Sopen03g010330' => 'spe',
		'Sopen03g013130' => 'spe',
		'Sopen03g013180' => 'spe',
		'Sopen03g013230' => 'spe',
		'Sopen03g014110' => 'spe',
		'Sopen03g015260' => 'spe',
		'Sopen03g015790' => 'spe',
		'Sopen03g018360' => 'spe',
		'Sopen03g024470' => 'spe',
		'Sopen03g026800' => 'spe',
		'Sopen04g003180' => 'spe',
		'Sopen04g008260' => 'spe',
		'Sopen04g010320' => 'spe',
		'Sopen04g011020' => 'spe',
		'Sopen04g011200' => 'spe',
		'Sopen04g011280' => 'spe',
		'Sopen04g021910' => 'spe',
		'Sopen04g023870' => 'spe',
		'Sopen05g009880' => 'spe',
		'Sopen05g011580' => 'spe',
		'Sopen05g012230' => 'spe',
		'Sopen05g012500' => 'spe',
		'Sopen05g012560' => 'spe',
		'Sopen05g012570' => 'spe',
		'Sopen05g012760' => 'spe',
		'Sopen05g013710' => 'spe',
		'Sopen05g015050' => 'spe',
		'Sopen05g026090' => 'spe',
		'Sopen05g028020' => 'spe',
		'Sopen05g028610' => 'spe',
		'Sopen05g029300' => 'spe',
		'Sopen06g005520' => 'spe',
		'Sopen06g006750' => 'spe',
		'Sopen06g008160' => 'spe',
		'Sopen06g009120' => 'spe',
		'Sopen06g013550' => 'spe',
		'Sopen06g015340' => 'spe',
		'Sopen06g018330' => 'spe',
		'Sopen06g021630' => 'spe',
		'Sopen06g021650' => 'spe',
		'Sopen07g006730' => 'spe',
		'Sopen07g008690' => 'spe',
		'Sopen07g008700' => 'spe',
		'Sopen07g008720' => 'spe',
		'Sopen07g008870' => 'spe',
		'Sopen07g009400' => 'spe',
		'Sopen07g009410' => 'spe',
		'Sopen07g009470' => 'spe',
		'Sopen07g009540' => 'spe',
		'Sopen07g011060' => 'spe',
		'Sopen07g011110' => 'spe',
		'Sopen07g011820' => 'spe',
		'Sopen07g013260' => 'spe',
		'Sopen07g014740' => 'spe',
		'Sopen07g015160' => 'spe',
		'Sopen07g015230' => 'spe',
		'Sopen07g016240' => 'spe',
		'Sopen07g017200' => 'spe',
		'Sopen07g017810' => 'spe',
		'Sopen07g019030' => 'spe',
		'Sopen07g020430' => 'spe',
		'Sopen07g021010' => 'spe',
		'Sopen07g021340' => 'spe',
		'Sopen07g022950' => 'spe',
		'Sopen07g027860' => 'spe',
		'Sopen08g007820' => 'spe',
		'Sopen08g009330' => 'spe',
		'Sopen08g012310' => 'spe',
		'Sopen08g012560' => 'spe',
		'Sopen08g014040' => 'spe',
		'Sopen08g014650' => 'spe',
		'Sopen08g017020' => 'spe',
		'Sopen08g018300' => 'spe',
		'Sopen08g020530' => 'spe',
		'Sopen09g008590' => 'spe',
		'Sopen09g008780' => 'spe',
		'Sopen09g011540' => 'spe',
		'Sopen09g011920' => 'spe',
		'Sopen09g014170' => 'spe',
		'Sopen09g016520' => 'spe',
		'Sopen09g021030' => 'spe',
		'Sopen09g023110' => 'spe',
		'Sopen09g024750' => 'spe',
		'Sopen09g025230' => 'spe',
		'Sopen09g025600' => 'spe',
		'Sopen09g034660' => 'spe',
		'Sopen10g006700' => 'spe',
		'Sopen10g009130' => 'spe',
		'Sopen10g009140' => 'spe',
		'Sopen10g009560' => 'spe',
		'Sopen10g010340' => 'spe',
		'Sopen10g011040' => 'spe',
		'Sopen10g013650' => 'spe',
		'Sopen10g014130' => 'spe',
		'Sopen10g014140' => 'spe',
		'Sopen10g014760' => 'spe',
		'Sopen10g015080' => 'spe',
		'Sopen10g015830' => 'spe',
		'Sopen10g018240' => 'spe',
		'Sopen10g018300' => 'spe',
		'Sopen10g018350' => 'spe',
		'Sopen10g018460' => 'spe',
		'Sopen10g018670' => 'spe',
		'Sopen10g019040' => 'spe',
		'Sopen10g019330' => 'spe',
		'Sopen10g019340' => 'spe',
		'Sopen10g019360' => 'spe',
		'Sopen10g019370' => 'spe',
		'Sopen10g020620' => 'spe',
		'Sopen10g021550' => 'spe',
		'Sopen10g022160' => 'spe',
		'Sopen10g023540' => 'spe',
		'Sopen10g023570' => 'spe',
		'Sopen10g023580' => 'spe',
		'Sopen10g023600' => 'spe',
		'Sopen10g023620' => 'spe',
		'Sopen10g023650' => 'spe',
		'Sopen10g024800' => 'spe',
		'Sopen10g026170' => 'spe',
		'Sopen11g007790' => 'spe',
		'Sopen11g010170' => 'spe',
		'Sopen11g010580' => 'spe',
		'Sopen11g013420' => 'spe',
		'Sopen11g016330' => 'spe',
		'Sopen11g017010' => 'spe',
		'Sopen11g018110' => 'spe',
		'Sopen11g018960' => 'spe',
		'Sopen11g019000' => 'spe',
		'Sopen11g019970' => 'spe',
		'Sopen11g020340' => 'spe',
		'Sopen11g020970' => 'spe',
		'Sopen12g008510' => 'spe',
		'Sopen12g008910' => 'spe',
		'Sopen12g009010' => 'spe',
		'Sopen12g009120' => 'spe',
		'Sopen12g009340' => 'spe',
		'Sopen12g009580' => 'spe',
		'Sopen12g010190' => 'spe',
		'Sopen12g010320' => 'spe',
		'Sopen12g010370' => 'spe',
		'Sopen12g012140' => 'spe',
		'Sopen12g012700' => 'spe',
		'Sopen12g013490' => 'spe',
		'Sopen12g014290' => 'spe',
		'Sopen12g015060' => 'spe',
		'Sopen12g015610' => 'spe',
		'Sopen12g018380' => 'spe',
		'Sopen12g019150' => 'spe',
		'Sopen12g020560' => 'spe',
		'Sopen12g023320' => 'spe',
		'Sp3g24190' => 'spa',
		'Sp4g07270' => 'spa',
		'Sp4g07530' => 'spa',
		'Sp4g07670' => 'spa',
		'Sp6g09360' => 'spa',
		'Sp7g04180' => 'spa',
		'Sp7g04980' => 'spa',
		'Sp7g08200' => 'spa',
		'Sp7g09660' => 'spa',
		'SpUn0081_0010' => 'spa',
		'THA.LOC104803417' => 'tha',
		'THA.LOC104817059' => 'tha',
		'Thecc.01G188700' => 'tca',
		'Thecc.05G106700' => 'tca',
		'Thecc.06G068800' => 'tca',
		'Thecc.07G189100' => 'tca',
		'Thecc.09G172800' => 'tca',
		'Thhalv10023044m.g' => 'esa',
		'Thhalv10023881m.g' => 'esa',
		'Thhalv10024067m.g' => 'esa'
	),
	'gf_id' => 'HOM05D000691',
	'gf_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'gf_types_configuration' => array(
		'HOMFAM' => array(
			'order' => '1',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		),
		'ORTHOFAM' => array(
			'order' => '2',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		)
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'allow_async_use' => true,
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D000691'
	),
	'data_identifier' => 'HOM05D000691',
	'data_type' => 'gf_id'
)
$sidebar_info = array(
	'gf_id' => 'HOM05D000691',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '827',
	'num_species' => '39'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$gf_genes = array(
	'Ah.01g012340' => 'amhyb',
	'Ah.01g013530' => 'amhyb',
	'Ah.03g143080' => 'amhyb',
	'Ah.06g186750' => 'amhyb',
	'Ah.06g186800' => 'amhyb',
	'Ah.07g200050' => 'amhyb',
	'Ah.08g209110' => 'amhyb',
	'Ah.09g229600' => 'amhyb',
	'Ah.09g229610' => 'amhyb',
	'Ah.10g026490' => 'amhyb',
	'Ah.12g065350' => 'amhyb',
	'Ah.13g069310' => 'amhyb',
	'Ah.14g080130' => 'amhyb',
	'Ah.14g081130' => 'amhyb',
	'Ah.14g081140' => 'amhyb',
	'Ah.16g109160' => 'amhyb',
	'Ah.16g109170' => 'amhyb',
	'Ah.16g109370' => 'amhyb',
	'AL3G47720' => 'aly',
	'ATR0012G060' => 'atr',
	'ATR0026G029' => 'atr',
	'ATR0193G043' => 'atr',
	'ATR0561G076' => 'atr',
	'ATR0561G181' => 'atr',
	'ATR0568G014' => 'atr',
	'ATR0568G114' => 'atr',
	'ATR0620G039' => 'atr',
	'ATR0629G125' => 'atr',
	'ATR0661G583' => 'atr',
	'ATR0686G019' => 'atr',
	'ATR0693G232' => 'atr',
	'ATR0697G104' => 'atr',
	'ATR0789G146' => 'atr',
	'ATR0794G066' => 'atr',
	'ATR1127G127' => 'atr',
	'ATR1131G040' => 'atr',
	'ATR1134G004' => 'atr',
	'ATR1134G095' => 'atr',
	'ATR1152G110' => 'atr',
	'ATR1153G065' => 'atr',
	'Atru.chr3.2296' => 'acertr',
	'AUR62000692' => 'cqu',
	'AUR62001473' => 'cqu',
	'AUR62001812' => 'cqu',
	'AUR62002706' => 'cqu',
	'AUR62003904' => 'cqu',
	'AUR62003905' => 'cqu',
	'AUR62004840' => 'cqu',
	'AUR62005160' => 'cqu',
	'AUR62005604' => 'cqu',
	'AUR62005891' => 'cqu',
	'AUR62007290' => 'cqu',
	'AUR62007502' => 'cqu',
	'AUR62007923' => 'cqu',
	'AUR62009972' => 'cqu',
	'AUR62010488' => 'cqu',
	'AUR62010643' => 'cqu',
	'AUR62012637' => 'cqu',
	'AUR62013492' => 'cqu',
	'AUR62014239' => 'cqu',
	'AUR62014878' => 'cqu',
	'AUR62015857' => 'cqu',
	'AUR62016224' => 'cqu',
	'AUR62017430' => 'cqu',
	'AUR62017467' => 'cqu',
	'AUR62018234' => 'cqu',
	'AUR62019060' => 'cqu',
	'AUR62019607' => 'cqu',
	'AUR62019661' => 'cqu',
	'AUR62022775' => 'cqu',
	'AUR62023603' => 'cqu',
	'AUR62024563' => 'cqu',
	'AUR62026199' => 'cqu',
	'AUR62026905' => 'cqu',
	'AUR62028639' => 'cqu',
	'AUR62029168' => 'cqu',
	'AUR62029551' => 'cqu',
	'AUR62029860' => 'cqu',
	'AUR62030164' => 'cqu',
	'AUR62031208' => 'cqu',
	'AUR62031287' => 'cqu',
	'AUR62031817' => 'cqu',
	'AUR62032126' => 'cqu',
	'AUR62032358' => 'cqu',
	'AUR62032884' => 'cqu',
	'AUR62032892' => 'cqu',
	'AUR62033082' => 'cqu',
	'AUR62033100' => 'cqu',
	'AUR62033255' => 'cqu',
	'AUR62033698' => 'cqu',
	'AUR62033757' => 'cqu',
	'AUR62034760' => 'cqu',
	'AUR62034860' => 'cqu',
	'AUR62035179' => 'cqu',
	'AUR62035881' => 'cqu',
	'AUR62036824' => 'cqu',
	'AUR62036876' => 'cqu',
	'AUR62037319' => 'cqu',
	'AUR62037362' => 'cqu',
	'AUR62037541' => 'cqu',
	'AUR62037853' => 'cqu',
	'AUR62038299' => 'cqu',
	'AUR62038563' => 'cqu',
	'AUR62038564' => 'cqu',
	'AUR62038594' => 'cqu',
	'AUR62038792' => 'cqu',
	'AUR62038947' => 'cqu',
	'AUR62039030' => 'cqu',
	'AUR62039231' => 'cqu',
	'AUR62039452' => 'cqu',
	'AUR62040334' => 'cqu',
	'AUR62040869' => 'cqu',
	'AUR62040870' => 'cqu',
	'AUR62040916' => 'cqu',
	'AUR62041199' => 'cqu',
	'AUR62041334' => 'cqu',
	'AUR62041608' => 'cqu',
	'AUR62041609' => 'cqu',
	'AUR62041833' => 'cqu',
	'AUR62041834' => 'cqu',
	'AUR62042054' => 'cqu',
	'AUR62042134' => 'cqu',
	'AUR62042236' => 'cqu',
	'AUR62042281' => 'cqu',
	'AUR62042593' => 'cqu',
	'AUR62042653' => 'cqu',
	'AUR62043025' => 'cqu',
	'AUR62043026' => 'cqu',
	'AUR62043063' => 'cqu',
	'AUR62043091' => 'cqu',
	'AUR62043320' => 'cqu',
	'BolC5t32558H' => 'bol',
	'CAN.G1036.12' => 'can',
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	'CAN.G159.19' => 'can',
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	'Sopen02g001360' => 'spe',
	'Sopen02g002010' => 'spe',
	'Sopen02g003600' => 'spe',
	'Sopen02g003730' => 'spe',
	'Sopen02g005430' => 'spe',
	'Sopen02g005510' => 'spe',
	'Sopen02g006840' => 'spe',
	'Sopen02g007390' => 'spe',
	'Sopen02g007420' => 'spe',
	'Sopen02g007540' => 'spe',
	'Sopen02g007920' => 'spe',
	'Sopen02g008960' => 'spe',
	'Sopen02g009450' => 'spe',
	'Sopen02g009460' => 'spe',
	'Sopen02g011320' => 'spe',
	'Sopen02g012680' => 'spe',
	'Sopen02g018090' => 'spe',
	'Sopen02g022140' => 'spe',
	'Sopen03g010330' => 'spe',
	'Sopen03g013130' => 'spe',
	'Sopen03g013180' => 'spe',
	'Sopen03g013230' => 'spe',
	'Sopen03g014110' => 'spe',
	'Sopen03g015260' => 'spe',
	'Sopen03g015790' => 'spe',
	'Sopen03g018360' => 'spe',
	'Sopen03g024470' => 'spe',
	'Sopen03g026800' => 'spe',
	'Sopen04g003180' => 'spe',
	'Sopen04g008260' => 'spe',
	'Sopen04g010320' => 'spe',
	'Sopen04g011020' => 'spe',
	'Sopen04g011200' => 'spe',
	'Sopen04g011280' => 'spe',
	'Sopen04g021910' => 'spe',
	'Sopen04g023870' => 'spe',
	'Sopen05g009880' => 'spe',
	'Sopen05g011580' => 'spe',
	'Sopen05g012230' => 'spe',
	'Sopen05g012500' => 'spe',
	'Sopen05g012560' => 'spe',
	'Sopen05g012570' => 'spe',
	'Sopen05g012760' => 'spe',
	'Sopen05g013710' => 'spe',
	'Sopen05g015050' => 'spe',
	'Sopen05g026090' => 'spe',
	'Sopen05g028020' => 'spe',
	'Sopen05g028610' => 'spe',
	'Sopen05g029300' => 'spe',
	'Sopen06g005520' => 'spe',
	'Sopen06g006750' => 'spe',
	'Sopen06g008160' => 'spe',
	'Sopen06g009120' => 'spe',
	'Sopen06g013550' => 'spe',
	'Sopen06g015340' => 'spe',
	'Sopen06g018330' => 'spe',
	'Sopen06g021630' => 'spe',
	'Sopen06g021650' => 'spe',
	'Sopen07g006730' => 'spe',
	'Sopen07g008690' => 'spe',
	'Sopen07g008700' => 'spe',
	'Sopen07g008720' => 'spe',
	'Sopen07g008870' => 'spe',
	'Sopen07g009400' => 'spe',
	'Sopen07g009410' => 'spe',
	'Sopen07g009470' => 'spe',
	'Sopen07g009540' => 'spe',
	'Sopen07g011060' => 'spe',
	'Sopen07g011110' => 'spe',
	'Sopen07g011820' => 'spe',
	'Sopen07g013260' => 'spe',
	'Sopen07g014740' => 'spe',
	'Sopen07g015160' => 'spe',
	'Sopen07g015230' => 'spe',
	'Sopen07g016240' => 'spe',
	'Sopen07g017200' => 'spe',
	'Sopen07g017810' => 'spe',
	'Sopen07g019030' => 'spe',
	'Sopen07g020430' => 'spe',
	'Sopen07g021010' => 'spe',
	'Sopen07g021340' => 'spe',
	'Sopen07g022950' => 'spe',
	'Sopen07g027860' => 'spe',
	'Sopen08g007820' => 'spe',
	'Sopen08g009330' => 'spe',
	'Sopen08g012310' => 'spe',
	'Sopen08g012560' => 'spe',
	'Sopen08g014040' => 'spe',
	'Sopen08g014650' => 'spe',
	'Sopen08g017020' => 'spe',
	'Sopen08g018300' => 'spe',
	'Sopen08g020530' => 'spe',
	'Sopen09g008590' => 'spe',
	'Sopen09g008780' => 'spe',
	'Sopen09g011540' => 'spe',
	'Sopen09g011920' => 'spe',
	'Sopen09g014170' => 'spe',
	'Sopen09g016520' => 'spe',
	'Sopen09g021030' => 'spe',
	'Sopen09g023110' => 'spe',
	'Sopen09g024750' => 'spe',
	'Sopen09g025230' => 'spe',
	'Sopen09g025600' => 'spe',
	'Sopen09g034660' => 'spe',
	'Sopen10g006700' => 'spe',
	'Sopen10g009130' => 'spe',
	'Sopen10g009140' => 'spe',
	'Sopen10g009560' => 'spe',
	'Sopen10g010340' => 'spe',
	'Sopen10g011040' => 'spe',
	'Sopen10g013650' => 'spe',
	'Sopen10g014130' => 'spe',
	'Sopen10g014140' => 'spe',
	'Sopen10g014760' => 'spe',
	'Sopen10g015080' => 'spe',
	'Sopen10g015830' => 'spe',
	'Sopen10g018240' => 'spe',
	'Sopen10g018300' => 'spe',
	'Sopen10g018350' => 'spe',
	'Sopen10g018460' => 'spe',
	'Sopen10g018670' => 'spe',
	'Sopen10g019040' => 'spe',
	'Sopen10g019330' => 'spe',
	'Sopen10g019340' => 'spe',
	'Sopen10g019360' => 'spe',
	'Sopen10g019370' => 'spe',
	'Sopen10g020620' => 'spe',
	'Sopen10g021550' => 'spe',
	'Sopen10g022160' => 'spe',
	'Sopen10g023540' => 'spe',
	'Sopen10g023570' => 'spe',
	'Sopen10g023580' => 'spe',
	'Sopen10g023600' => 'spe',
	'Sopen10g023620' => 'spe',
	'Sopen10g023650' => 'spe',
	'Sopen10g024800' => 'spe',
	'Sopen10g026170' => 'spe',
	'Sopen11g007790' => 'spe',
	'Sopen11g010170' => 'spe',
	'Sopen11g010580' => 'spe',
	'Sopen11g013420' => 'spe',
	'Sopen11g016330' => 'spe',
	'Sopen11g017010' => 'spe',
	'Sopen11g018110' => 'spe',
	'Sopen11g018960' => 'spe',
	'Sopen11g019000' => 'spe',
	'Sopen11g019970' => 'spe',
	'Sopen11g020340' => 'spe',
	'Sopen11g020970' => 'spe',
	'Sopen12g008510' => 'spe',
	'Sopen12g008910' => 'spe',
	'Sopen12g009010' => 'spe',
	'Sopen12g009120' => 'spe',
	'Sopen12g009340' => 'spe',
	'Sopen12g009580' => 'spe',
	'Sopen12g010190' => 'spe',
	'Sopen12g010320' => 'spe',
	'Sopen12g010370' => 'spe',
	'Sopen12g012140' => 'spe',
	'Sopen12g012700' => 'spe',
	'Sopen12g013490' => 'spe',
	'Sopen12g014290' => 'spe',
	'Sopen12g015060' => 'spe',
	'Sopen12g015610' => 'spe',
	'Sopen12g018380' => 'spe',
	'Sopen12g019150' => 'spe',
	'Sopen12g020560' => 'spe',
	'Sopen12g023320' => 'spe',
	'Sp3g24190' => 'spa',
	'Sp4g07270' => 'spa',
	'Sp4g07530' => 'spa',
	'Sp4g07670' => 'spa',
	'Sp6g09360' => 'spa',
	'Sp7g04180' => 'spa',
	'Sp7g04980' => 'spa',
	'Sp7g08200' => 'spa',
	'Sp7g09660' => 'spa',
	'SpUn0081_0010' => 'spa',
	'THA.LOC104803417' => 'tha',
	'THA.LOC104817059' => 'tha',
	'Thecc.01G188700' => 'tca',
	'Thecc.05G106700' => 'tca',
	'Thecc.06G068800' => 'tca',
	'Thecc.07G189100' => 'tca',
	'Thecc.09G172800' => 'tca',
	'Thhalv10023044m.g' => 'esa',
	'Thhalv10023881m.g' => 'esa',
	'Thhalv10024067m.g' => 'esa'
)
$gf_id = 'HOM05D000691'
$gf_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$gf_types_configuration = array(
	'HOMFAM' => array(
		'order' => '1',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	),
	'ORTHOFAM' => array(
		'order' => '2',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	)
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$allow_async_use = true
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D000691'
)
$data_identifier = 'HOM05D000691'
$data_type = 'gf_id'
$species_gene_counts = array(
	'amhyb' => (int) 18,
	'aly' => (int) 1,
	'atr' => (int) 21,
	'acertr' => (int) 1,
	'cqu' => (int) 90,
	'bol' => (int) 1,
	'can' => (int) 7,
	'cil' => (int) 3,
	'cla' => (int) 15,
	'col' => (int) 1,
	'cpa' => (int) 2,
	'csa' => (int) 7,
	'camsi' => (int) 10,
	'din' => (int) 1,
	'dzi' => (int) 2,
	'bvu' => (int) 18,
	'fve' => (int) 22,
	'gra' => (int) 1,
	'han' => (int) 7,
	'hma' => (int) 9,
	'sun' => (int) 16,
	'lonja' => (int) 46,
	'mes' => (int) 8,
	'mbi' => (int) 2,
	'cme' => (int) 6,
	'oeu' => (int) 110,
	'stu' => (int) 45,
	'ptr' => (int) 1,
	'rch' => (int) 1,
	'sci' => (int) 1,
	'sgi' => (int) 31,
	'sas' => (int) 1,
	'shi' => (int) 89,
	'sly' => (int) 2,
	'spe' => (int) 211,
	'spa' => (int) 10,
	'tha' => (int) 2,
	'tca' => (int) 5,
	'esa' => (int) 3
)
$gf_gene_species = 'esa'
$gf_gene_id = 'Thhalv10024067m.g'
$species_info = array(
	'species' => 'shi',
	'common_name' => 'Sapria himalayana',
	'tax_id' => '289637',
	'version' => 'v1.0'
)
$local_species = 'shi'
$disabled = ''
$selected = ''
$num_hits = (int) 0
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Analysis/custom_tree_creation.ctp, line 27
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933

Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]
Code Context
        $disabled    = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";

        $selected    = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";

        $num_hits    = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D000691',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '827',
		'num_species' => '39'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'gf_genes' => array(
		'Ah.01g012340' => 'amhyb',
		'Ah.01g013530' => 'amhyb',
		'Ah.03g143080' => 'amhyb',
		'Ah.06g186750' => 'amhyb',
		'Ah.06g186800' => 'amhyb',
		'Ah.07g200050' => 'amhyb',
		'Ah.08g209110' => 'amhyb',
		'Ah.09g229600' => 'amhyb',
		'Ah.09g229610' => 'amhyb',
		'Ah.10g026490' => 'amhyb',
		'Ah.12g065350' => 'amhyb',
		'Ah.13g069310' => 'amhyb',
		'Ah.14g080130' => 'amhyb',
		'Ah.14g081130' => 'amhyb',
		'Ah.14g081140' => 'amhyb',
		'Ah.16g109160' => 'amhyb',
		'Ah.16g109170' => 'amhyb',
		'Ah.16g109370' => 'amhyb',
		'AL3G47720' => 'aly',
		'ATR0012G060' => 'atr',
		'ATR0026G029' => 'atr',
		'ATR0193G043' => 'atr',
		'ATR0561G076' => 'atr',
		'ATR0561G181' => 'atr',
		'ATR0568G014' => 'atr',
		'ATR0568G114' => 'atr',
		'ATR0620G039' => 'atr',
		'ATR0629G125' => 'atr',
		'ATR0661G583' => 'atr',
		'ATR0686G019' => 'atr',
		'ATR0693G232' => 'atr',
		'ATR0697G104' => 'atr',
		'ATR0789G146' => 'atr',
		'ATR0794G066' => 'atr',
		'ATR1127G127' => 'atr',
		'ATR1131G040' => 'atr',
		'ATR1134G004' => 'atr',
		'ATR1134G095' => 'atr',
		'ATR1152G110' => 'atr',
		'ATR1153G065' => 'atr',
		'Atru.chr3.2296' => 'acertr',
		'AUR62000692' => 'cqu',
		'AUR62001473' => 'cqu',
		'AUR62001812' => 'cqu',
		'AUR62002706' => 'cqu',
		'AUR62003904' => 'cqu',
		'AUR62003905' => 'cqu',
		'AUR62004840' => 'cqu',
		'AUR62005160' => 'cqu',
		'AUR62005604' => 'cqu',
		'AUR62005891' => 'cqu',
		'AUR62007290' => 'cqu',
		'AUR62007502' => 'cqu',
		'AUR62007923' => 'cqu',
		'AUR62009972' => 'cqu',
		'AUR62010488' => 'cqu',
		'AUR62010643' => 'cqu',
		'AUR62012637' => 'cqu',
		'AUR62013492' => 'cqu',
		'AUR62014239' => 'cqu',
		'AUR62014878' => 'cqu',
		'AUR62015857' => 'cqu',
		'AUR62016224' => 'cqu',
		'AUR62017430' => 'cqu',
		'AUR62017467' => 'cqu',
		'AUR62018234' => 'cqu',
		'AUR62019060' => 'cqu',
		'AUR62019607' => 'cqu',
		'AUR62019661' => 'cqu',
		'AUR62022775' => 'cqu',
		'AUR62023603' => 'cqu',
		'AUR62024563' => 'cqu',
		'AUR62026199' => 'cqu',
		'AUR62026905' => 'cqu',
		'AUR62028639' => 'cqu',
		'AUR62029168' => 'cqu',
		'AUR62029551' => 'cqu',
		'AUR62029860' => 'cqu',
		'AUR62030164' => 'cqu',
		'AUR62031208' => 'cqu',
		'AUR62031287' => 'cqu',
		'AUR62031817' => 'cqu',
		'AUR62032126' => 'cqu',
		'AUR62032358' => 'cqu',
		'AUR62032884' => 'cqu',
		'AUR62032892' => 'cqu',
		'AUR62033082' => 'cqu',
		'AUR62033100' => 'cqu',
		'AUR62033255' => 'cqu',
		'AUR62033698' => 'cqu',
		'AUR62033757' => 'cqu',
		'AUR62034760' => 'cqu',
		'AUR62034860' => 'cqu',
		'AUR62035179' => 'cqu',
		'AUR62035881' => 'cqu',
		'AUR62036824' => 'cqu',
		'AUR62036876' => 'cqu',
		'AUR62037319' => 'cqu',
		'AUR62037362' => 'cqu',
		'AUR62037541' => 'cqu',
		'AUR62037853' => 'cqu',
		'AUR62038299' => 'cqu',
		'AUR62038563' => 'cqu',
		'AUR62038564' => 'cqu',
		'AUR62038594' => 'cqu',
		'AUR62038792' => 'cqu',
		'AUR62038947' => 'cqu',
		'AUR62039030' => 'cqu',
		'AUR62039231' => 'cqu',
		'AUR62039452' => 'cqu',
		'AUR62040334' => 'cqu',
		'AUR62040869' => 'cqu',
		'AUR62040870' => 'cqu',
		'AUR62040916' => 'cqu',
		'AUR62041199' => 'cqu',
		'AUR62041334' => 'cqu',
		'AUR62041608' => 'cqu',
		'AUR62041609' => 'cqu',
		'AUR62041833' => 'cqu',
		'AUR62041834' => 'cqu',
		'AUR62042054' => 'cqu',
		'AUR62042134' => 'cqu',
		'AUR62042236' => 'cqu',
		'AUR62042281' => 'cqu',
		'AUR62042593' => 'cqu',
		'AUR62042653' => 'cqu',
		'AUR62043025' => 'cqu',
		'AUR62043026' => 'cqu',
		'AUR62043063' => 'cqu',
		'AUR62043091' => 'cqu',
		'AUR62043320' => 'cqu',
		'BolC5t32558H' => 'bol',
		'CAN.G1036.12' => 'can',
		'CAN.G1432.23' => 'can',
		'CAN.G159.19' => 'can',
		'CAN.G4114.1' => 'can',
		'CAN.G492.85' => 'can',
		'CAN.G500.95' => 'can',
		'CAN.G93.31' => 'can',
		'CiPaw.04G054900' => 'cil',
		'CiPaw.05G045400' => 'cil',
		'CiPaw.15G094100' => 'cil',
		'ClCG00G000700' => 'cla',
		'ClCG00G000780' => 'cla',
		'ClCG01G012280' => 'cla',
		'ClCG02G006140' => 'cla',
		'ClCG02G009810' => 'cla',
		'ClCG03G010170' => 'cla',
		'ClCG03G010260' => 'cla',
		'ClCG04G000770' => 'cla',
		'ClCG05G013980' => 'cla',
		'ClCG06G009110' => 'cla',
		'ClCG06G009120' => 'cla',
		'ClCG08G002190' => 'cla',
		'ClCG09G013830' => 'cla',
		'ClCG10G006760' => 'cla',
		'ClCG11G007310' => 'cla',
		'COL.COLO4_16141' => 'col',
		'Cpa.g.sc202.2' => 'cpa',
		'Cpa.g.sc76.18' => 'cpa',
		'CsaV3_1G031080' => 'csa',
		'CsaV3_4G011870' => 'csa',
		'CsaV3_4G014860' => 'csa',
		'CsaV3_4G021860' => 'csa',
		'CsaV3_6G009880' => 'csa',
		'CsaV3_7G021240' => 'csa',
		'CsaV3_UNG240600' => 'csa',
		'CSS0003516' => 'camsi',
		'CSS0013023' => 'camsi',
		'CSS0017680' => 'camsi',
		'CSS0018551' => 'camsi',
		'CSS0026792' => 'camsi',
		'CSS0028271' => 'camsi',
		'CSS0033603' => 'camsi',
		'CSS0040789' => 'camsi',
		'CSS0045068' => 'camsi',
		'CSS0045803' => 'camsi',
		'Dinv10528' => 'din',
		'Duzib116G0875' => 'dzi',
		'Duzib128G0055' => 'dzi',
		'EL10Ac1g02377' => 'bvu',
		'EL10Ac1g02378' => 'bvu',
		'EL10Ac2g03486' => 'bvu',
		'EL10Ac2g03487' => 'bvu',
		'EL10Ac3g05722' => 'bvu',
		'EL10Ac3g06186' => 'bvu',
		'EL10Ac5g11258' => 'bvu',
		'EL10Ac6g13831' => 'bvu',
		'EL10Ac6g14162' => 'bvu',
		'EL10Ac6g14316' => 'bvu',
		'EL10Ac6g14317' => 'bvu',
		'EL10Ac6g14588' => 'bvu',
		'EL10Ac7g16302' => 'bvu',
		'EL10Ac7g16543' => 'bvu',
		'EL10Ac8g18762' => 'bvu',
		'EL10Ac9g20847' => 'bvu',
		'EL10As7g23731' => 'bvu',
		'EL10As7g23732' => 'bvu',
		'FvH4_1g23713' => 'fve',
		'FvH4_2g00261' => 'fve',
		'FvH4_2g00262' => 'fve',
		'FvH4_2g15681' => 'fve',
		'FvH4_2g17851' => 'fve',
		'FvH4_3g10531' => 'fve',
		'FvH4_3g33536' => 'fve',
		'FvH4_4g03471' => 'fve',
		'FvH4_4g19351' => 'fve',
		'FvH4_4g34281' => 'fve',
		'FvH4_5g03811' => 'fve',
		'FvH4_5g03812' => 'fve',
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		'Sopen05g029300' => 'spe',
		'Sopen06g005520' => 'spe',
		'Sopen06g006750' => 'spe',
		'Sopen06g008160' => 'spe',
		'Sopen06g009120' => 'spe',
		'Sopen06g013550' => 'spe',
		'Sopen06g015340' => 'spe',
		'Sopen06g018330' => 'spe',
		'Sopen06g021630' => 'spe',
		'Sopen06g021650' => 'spe',
		'Sopen07g006730' => 'spe',
		'Sopen07g008690' => 'spe',
		'Sopen07g008700' => 'spe',
		'Sopen07g008720' => 'spe',
		'Sopen07g008870' => 'spe',
		'Sopen07g009400' => 'spe',
		'Sopen07g009410' => 'spe',
		'Sopen07g009470' => 'spe',
		'Sopen07g009540' => 'spe',
		'Sopen07g011060' => 'spe',
		'Sopen07g011110' => 'spe',
		'Sopen07g011820' => 'spe',
		'Sopen07g013260' => 'spe',
		'Sopen07g014740' => 'spe',
		'Sopen07g015160' => 'spe',
		'Sopen07g015230' => 'spe',
		'Sopen07g016240' => 'spe',
		'Sopen07g017200' => 'spe',
		'Sopen07g017810' => 'spe',
		'Sopen07g019030' => 'spe',
		'Sopen07g020430' => 'spe',
		'Sopen07g021010' => 'spe',
		'Sopen07g021340' => 'spe',
		'Sopen07g022950' => 'spe',
		'Sopen07g027860' => 'spe',
		'Sopen08g007820' => 'spe',
		'Sopen08g009330' => 'spe',
		'Sopen08g012310' => 'spe',
		'Sopen08g012560' => 'spe',
		'Sopen08g014040' => 'spe',
		'Sopen08g014650' => 'spe',
		'Sopen08g017020' => 'spe',
		'Sopen08g018300' => 'spe',
		'Sopen08g020530' => 'spe',
		'Sopen09g008590' => 'spe',
		'Sopen09g008780' => 'spe',
		'Sopen09g011540' => 'spe',
		'Sopen09g011920' => 'spe',
		'Sopen09g014170' => 'spe',
		'Sopen09g016520' => 'spe',
		'Sopen09g021030' => 'spe',
		'Sopen09g023110' => 'spe',
		'Sopen09g024750' => 'spe',
		'Sopen09g025230' => 'spe',
		'Sopen09g025600' => 'spe',
		'Sopen09g034660' => 'spe',
		'Sopen10g006700' => 'spe',
		'Sopen10g009130' => 'spe',
		'Sopen10g009140' => 'spe',
		'Sopen10g009560' => 'spe',
		'Sopen10g010340' => 'spe',
		'Sopen10g011040' => 'spe',
		'Sopen10g013650' => 'spe',
		'Sopen10g014130' => 'spe',
		'Sopen10g014140' => 'spe',
		'Sopen10g014760' => 'spe',
		'Sopen10g015080' => 'spe',
		'Sopen10g015830' => 'spe',
		'Sopen10g018240' => 'spe',
		'Sopen10g018300' => 'spe',
		'Sopen10g018350' => 'spe',
		'Sopen10g018460' => 'spe',
		'Sopen10g018670' => 'spe',
		'Sopen10g019040' => 'spe',
		'Sopen10g019330' => 'spe',
		'Sopen10g019340' => 'spe',
		'Sopen10g019360' => 'spe',
		'Sopen10g019370' => 'spe',
		'Sopen10g020620' => 'spe',
		'Sopen10g021550' => 'spe',
		'Sopen10g022160' => 'spe',
		'Sopen10g023540' => 'spe',
		'Sopen10g023570' => 'spe',
		'Sopen10g023580' => 'spe',
		'Sopen10g023600' => 'spe',
		'Sopen10g023620' => 'spe',
		'Sopen10g023650' => 'spe',
		'Sopen10g024800' => 'spe',
		'Sopen10g026170' => 'spe',
		'Sopen11g007790' => 'spe',
		'Sopen11g010170' => 'spe',
		'Sopen11g010580' => 'spe',
		'Sopen11g013420' => 'spe',
		'Sopen11g016330' => 'spe',
		'Sopen11g017010' => 'spe',
		'Sopen11g018110' => 'spe',
		'Sopen11g018960' => 'spe',
		'Sopen11g019000' => 'spe',
		'Sopen11g019970' => 'spe',
		'Sopen11g020340' => 'spe',
		'Sopen11g020970' => 'spe',
		'Sopen12g008510' => 'spe',
		'Sopen12g008910' => 'spe',
		'Sopen12g009010' => 'spe',
		'Sopen12g009120' => 'spe',
		'Sopen12g009340' => 'spe',
		'Sopen12g009580' => 'spe',
		'Sopen12g010190' => 'spe',
		'Sopen12g010320' => 'spe',
		'Sopen12g010370' => 'spe',
		'Sopen12g012140' => 'spe',
		'Sopen12g012700' => 'spe',
		'Sopen12g013490' => 'spe',
		'Sopen12g014290' => 'spe',
		'Sopen12g015060' => 'spe',
		'Sopen12g015610' => 'spe',
		'Sopen12g018380' => 'spe',
		'Sopen12g019150' => 'spe',
		'Sopen12g020560' => 'spe',
		'Sopen12g023320' => 'spe',
		'Sp3g24190' => 'spa',
		'Sp4g07270' => 'spa',
		'Sp4g07530' => 'spa',
		'Sp4g07670' => 'spa',
		'Sp6g09360' => 'spa',
		'Sp7g04180' => 'spa',
		'Sp7g04980' => 'spa',
		'Sp7g08200' => 'spa',
		'Sp7g09660' => 'spa',
		'SpUn0081_0010' => 'spa',
		'THA.LOC104803417' => 'tha',
		'THA.LOC104817059' => 'tha',
		'Thecc.01G188700' => 'tca',
		'Thecc.05G106700' => 'tca',
		'Thecc.06G068800' => 'tca',
		'Thecc.07G189100' => 'tca',
		'Thecc.09G172800' => 'tca',
		'Thhalv10023044m.g' => 'esa',
		'Thhalv10023881m.g' => 'esa',
		'Thhalv10024067m.g' => 'esa'
	),
	'gf_id' => 'HOM05D000691',
	'gf_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'gf_types_configuration' => array(
		'HOMFAM' => array(
			'order' => '1',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		),
		'ORTHOFAM' => array(
			'order' => '2',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		)
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'allow_async_use' => true,
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D000691'
	),
	'data_identifier' => 'HOM05D000691',
	'data_type' => 'gf_id'
)
$sidebar_info = array(
	'gf_id' => 'HOM05D000691',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '827',
	'num_species' => '39'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$gf_genes = array(
	'Ah.01g012340' => 'amhyb',
	'Ah.01g013530' => 'amhyb',
	'Ah.03g143080' => 'amhyb',
	'Ah.06g186750' => 'amhyb',
	'Ah.06g186800' => 'amhyb',
	'Ah.07g200050' => 'amhyb',
	'Ah.08g209110' => 'amhyb',
	'Ah.09g229600' => 'amhyb',
	'Ah.09g229610' => 'amhyb',
	'Ah.10g026490' => 'amhyb',
	'Ah.12g065350' => 'amhyb',
	'Ah.13g069310' => 'amhyb',
	'Ah.14g080130' => 'amhyb',
	'Ah.14g081130' => 'amhyb',
	'Ah.14g081140' => 'amhyb',
	'Ah.16g109160' => 'amhyb',
	'Ah.16g109170' => 'amhyb',
	'Ah.16g109370' => 'amhyb',
	'AL3G47720' => 'aly',
	'ATR0012G060' => 'atr',
	'ATR0026G029' => 'atr',
	'ATR0193G043' => 'atr',
	'ATR0561G076' => 'atr',
	'ATR0561G181' => 'atr',
	'ATR0568G014' => 'atr',
	'ATR0568G114' => 'atr',
	'ATR0620G039' => 'atr',
	'ATR0629G125' => 'atr',
	'ATR0661G583' => 'atr',
	'ATR0686G019' => 'atr',
	'ATR0693G232' => 'atr',
	'ATR0697G104' => 'atr',
	'ATR0789G146' => 'atr',
	'ATR0794G066' => 'atr',
	'ATR1127G127' => 'atr',
	'ATR1131G040' => 'atr',
	'ATR1134G004' => 'atr',
	'ATR1134G095' => 'atr',
	'ATR1152G110' => 'atr',
	'ATR1153G065' => 'atr',
	'Atru.chr3.2296' => 'acertr',
	'AUR62000692' => 'cqu',
	'AUR62001473' => 'cqu',
	'AUR62001812' => 'cqu',
	'AUR62002706' => 'cqu',
	'AUR62003904' => 'cqu',
	'AUR62003905' => 'cqu',
	'AUR62004840' => 'cqu',
	'AUR62005160' => 'cqu',
	'AUR62005604' => 'cqu',
	'AUR62005891' => 'cqu',
	'AUR62007290' => 'cqu',
	'AUR62007502' => 'cqu',
	'AUR62007923' => 'cqu',
	'AUR62009972' => 'cqu',
	'AUR62010488' => 'cqu',
	'AUR62010643' => 'cqu',
	'AUR62012637' => 'cqu',
	'AUR62013492' => 'cqu',
	'AUR62014239' => 'cqu',
	'AUR62014878' => 'cqu',
	'AUR62015857' => 'cqu',
	'AUR62016224' => 'cqu',
	'AUR62017430' => 'cqu',
	'AUR62017467' => 'cqu',
	'AUR62018234' => 'cqu',
	'AUR62019060' => 'cqu',
	'AUR62019607' => 'cqu',
	'AUR62019661' => 'cqu',
	'AUR62022775' => 'cqu',
	'AUR62023603' => 'cqu',
	'AUR62024563' => 'cqu',
	'AUR62026199' => 'cqu',
	'AUR62026905' => 'cqu',
	'AUR62028639' => 'cqu',
	'AUR62029168' => 'cqu',
	'AUR62029551' => 'cqu',
	'AUR62029860' => 'cqu',
	'AUR62030164' => 'cqu',
	'AUR62031208' => 'cqu',
	'AUR62031287' => 'cqu',
	'AUR62031817' => 'cqu',
	'AUR62032126' => 'cqu',
	'AUR62032358' => 'cqu',
	'AUR62032884' => 'cqu',
	'AUR62032892' => 'cqu',
	'AUR62033082' => 'cqu',
	'AUR62033100' => 'cqu',
	'AUR62033255' => 'cqu',
	'AUR62033698' => 'cqu',
	'AUR62033757' => 'cqu',
	'AUR62034760' => 'cqu',
	'AUR62034860' => 'cqu',
	'AUR62035179' => 'cqu',
	'AUR62035881' => 'cqu',
	'AUR62036824' => 'cqu',
	'AUR62036876' => 'cqu',
	'AUR62037319' => 'cqu',
	'AUR62037362' => 'cqu',
	'AUR62037541' => 'cqu',
	'AUR62037853' => 'cqu',
	'AUR62038299' => 'cqu',
	'AUR62038563' => 'cqu',
	'AUR62038564' => 'cqu',
	'AUR62038594' => 'cqu',
	'AUR62038792' => 'cqu',
	'AUR62038947' => 'cqu',
	'AUR62039030' => 'cqu',
	'AUR62039231' => 'cqu',
	'AUR62039452' => 'cqu',
	'AUR62040334' => 'cqu',
	'AUR62040869' => 'cqu',
	'AUR62040870' => 'cqu',
	'AUR62040916' => 'cqu',
	'AUR62041199' => 'cqu',
	'AUR62041334' => 'cqu',
	'AUR62041608' => 'cqu',
	'AUR62041609' => 'cqu',
	'AUR62041833' => 'cqu',
	'AUR62041834' => 'cqu',
	'AUR62042054' => 'cqu',
	'AUR62042134' => 'cqu',
	'AUR62042236' => 'cqu',
	'AUR62042281' => 'cqu',
	'AUR62042593' => 'cqu',
	'AUR62042653' => 'cqu',
	'AUR62043025' => 'cqu',
	'AUR62043026' => 'cqu',
	'AUR62043063' => 'cqu',
	'AUR62043091' => 'cqu',
	'AUR62043320' => 'cqu',
	'BolC5t32558H' => 'bol',
	'CAN.G1036.12' => 'can',
	'CAN.G1432.23' => 'can',
	'CAN.G159.19' => 'can',
	'CAN.G4114.1' => 'can',
	'CAN.G492.85' => 'can',
	'CAN.G500.95' => 'can',
	'CAN.G93.31' => 'can',
	'CiPaw.04G054900' => 'cil',
	'CiPaw.05G045400' => 'cil',
	'CiPaw.15G094100' => 'cil',
	'ClCG00G000700' => 'cla',
	'ClCG00G000780' => 'cla',
	'ClCG01G012280' => 'cla',
	'ClCG02G006140' => 'cla',
	'ClCG02G009810' => 'cla',
	'ClCG03G010170' => 'cla',
	'ClCG03G010260' => 'cla',
	'ClCG04G000770' => 'cla',
	'ClCG05G013980' => 'cla',
	'ClCG06G009110' => 'cla',
	'ClCG06G009120' => 'cla',
	'ClCG08G002190' => 'cla',
	'ClCG09G013830' => 'cla',
	'ClCG10G006760' => 'cla',
	'ClCG11G007310' => 'cla',
	'COL.COLO4_16141' => 'col',
	'Cpa.g.sc202.2' => 'cpa',
	'Cpa.g.sc76.18' => 'cpa',
	'CsaV3_1G031080' => 'csa',
	'CsaV3_4G011870' => 'csa',
	'CsaV3_4G014860' => 'csa',
	'CsaV3_4G021860' => 'csa',
	'CsaV3_6G009880' => 'csa',
	'CsaV3_7G021240' => 'csa',
	'CsaV3_UNG240600' => 'csa',
	'CSS0003516' => 'camsi',
	'CSS0013023' => 'camsi',
	'CSS0017680' => 'camsi',
	'CSS0018551' => 'camsi',
	'CSS0026792' => 'camsi',
	'CSS0028271' => 'camsi',
	'CSS0033603' => 'camsi',
	'CSS0040789' => 'camsi',
	'CSS0045068' => 'camsi',
	'CSS0045803' => 'camsi',
	'Dinv10528' => 'din',
	'Duzib116G0875' => 'dzi',
	'Duzib128G0055' => 'dzi',
	'EL10Ac1g02377' => 'bvu',
	'EL10Ac1g02378' => 'bvu',
	'EL10Ac2g03486' => 'bvu',
	'EL10Ac2g03487' => 'bvu',
	'EL10Ac3g05722' => 'bvu',
	'EL10Ac3g06186' => 'bvu',
	'EL10Ac5g11258' => 'bvu',
	'EL10Ac6g13831' => 'bvu',
	'EL10Ac6g14162' => 'bvu',
	'EL10Ac6g14316' => 'bvu',
	'EL10Ac6g14317' => 'bvu',
	'EL10Ac6g14588' => 'bvu',
	'EL10Ac7g16302' => 'bvu',
	'EL10Ac7g16543' => 'bvu',
	'EL10Ac8g18762' => 'bvu',
	'EL10Ac9g20847' => 'bvu',
	'EL10As7g23731' => 'bvu',
	'EL10As7g23732' => 'bvu',
	'FvH4_1g23713' => 'fve',
	'FvH4_2g00261' => 'fve',
	'FvH4_2g00262' => 'fve',
	'FvH4_2g15681' => 'fve',
	'FvH4_2g17851' => 'fve',
	'FvH4_3g10531' => 'fve',
	'FvH4_3g33536' => 'fve',
	'FvH4_4g03471' => 'fve',
	'FvH4_4g19351' => 'fve',
	'FvH4_4g34281' => 'fve',
	'FvH4_5g03811' => 'fve',
	'FvH4_5g03812' => 'fve',
	'FvH4_5g11822' => 'fve',
	'FvH4_5g31701' => 'fve',
	'FvH4_6g12161' => 'fve',
	'FvH4_6g15222' => 'fve',
	'FvH4_6g15223' => 'fve',
	'FvH4_6g19301' => 'fve',
	'FvH4_6g33011' => 'fve',
	'FvH4_6g50161' => 'fve',
	'FvH4_7g04123' => 'fve',
	'FvH4_c7g00010' => 'fve',
	'Gorai.012G165300' => 'gra',
	'HanXRQChr00c0452g0574871' => 'han',
	'HanXRQChr01g0029471' => 'han',
	'HanXRQChr05g0133501' => 'han',
	'HanXRQChr10g0280141' => 'han',
	'HanXRQChr10g0280631' => 'han',
	'HanXRQChr13g0409991' => 'han',
	'HanXRQChr15g0468361' => 'han',
	'Hma1.2p1_0021F.1_g014270' => 'hma',
	'Hma1.2p1_0026F.1_g016730' => 'hma',
	'Hma1.2p1_0177F.1_g077930' => 'hma',
	'Hma1.2p1_0370F.1_g137540' => 'hma',
	'Hma1.2p1_0637F.1_g193600' => 'hma',
	'Hma1.2p1_1045F.1_g251360' => 'hma',
	'Hma1.2p1_1168F.1_g263120' => 'hma',
	'Hma1.2p1_1640F.1_g295040' => 'hma',
	'Hma1.2p1_2467F.1_g322660' => 'hma',
	'Hund01785' => 'sun',
	'Hund04739' => 'sun',
	'Hund07717' => 'sun',
	'Hund08060' => 'sun',
	'Hund08734' => 'sun',
	'Hund10876' => 'sun',
	'Hund14991' => 'sun',
	'Hund15051' => 'sun',
	'Hund15082' => 'sun',
	'Hund17998' => 'sun',
	'Hund18526' => 'sun',
	'Hund19828' => 'sun',
	'Hund23384' => 'sun',
	'Hund26399' => 'sun',
	'Hund28766' => 'sun',
	'Hund28768' => 'sun',
	'Lj1A487G33' => 'lonja',
	'Lj1A487G34' => 'lonja',
	'Lj1A489G15' => 'lonja',
	'Lj1C1113T3' => 'lonja',
	'Lj1C3T4' => 'lonja',
	'Lj1C763G4' => 'lonja',
	'Lj1P195T27' => 'lonja',
	'Lj1P573T13' => 'lonja',
	'Lj1P895T45' => 'lonja',
	'Lj1P995G28' => 'lonja',
	'Lj2A1125G46' => 'lonja',
	'Lj2C116T7' => 'lonja',
	'Lj2P295T30' => 'lonja',
	'Lj2P476T23' => 'lonja',
	'Lj2P603T27' => 'lonja',
	'Lj2P609T17' => 'lonja',
	'Lj2P727T24' => 'lonja',
	'Lj3C273T2' => 'lonja',
	'Lj3C644G3' => 'lonja',
	'Lj3C644G4' => 'lonja',
	'Lj3P463T4' => 'lonja',
	'Lj3P545T31' => 'lonja',
	'Lj3P820T55' => 'lonja',
	'Lj4C260T12' => 'lonja',
	'Lj4C714G8' => 'lonja',
	'Lj4P131T14' => 'lonja',
	'Lj4P131T15' => 'lonja',
	'Lj5C102G24' => 'lonja',
	'Lj5P491T3' => 'lonja',
	'Lj5P564T12' => 'lonja',
	'Lj5P786T11' => 'lonja',
	'Lj6C97T3' => 'lonja',
	'Lj8P523T19' => 'lonja',
	'Lj9A24G30' => 'lonja',
	'Lj9A424G33' => 'lonja',
	'Lj9C219G10' => 'lonja',
	'Lj9P219T12' => 'lonja',
	'Lj9P705T22' => 'lonja',
	'Lju114C4T7' => 'lonja',
	'Lju1220C5G5' => 'lonja',
	'Lju2092C1G1' => 'lonja',
	'Lju2092C1T0' => 'lonja',
	'Lju225C6G6' => 'lonja',
	'Lju427C2T0' => 'lonja',
	'Lju50C9T4' => 'lonja',
	'Lju926C12T2' => 'lonja',
	'Manes.06G126602' => 'mes',
	'Manes.13G002614' => 'mes',
	'Manes.15G192966' => 'mes',
	'Manes.17G001483' => 'mes',
	'Manes.17G022547' => 'mes',
	'Manes.18G042825' => 'mes',
	'Manes.S026816' => 'mes',
	'Manes.S027416' => 'mes',
	'MBI02_g15234_MAGBIO' => 'mbi',
	'MBI16_g35584_MAGBIO' => 'mbi',
	'MELO3C008948.2' => 'cme',
	'MELO3C010395.2' => 'cme',
	'MELO3C010396.2' => 'cme',
	'MELO3C015759.2' => 'cme',
	'MELO3C022607.2' => 'cme',
	'MELO3C028897.2' => 'cme',
	'Oeu000188.1' => 'oeu',
	'Oeu002226.1' => 'oeu',
	'Oeu003087.1' => 'oeu',
	'Oeu003392.1' => 'oeu',
	'Oeu003523.1' => 'oeu',
	'Oeu003524.1' => 'oeu',
	'Oeu003528.1' => 'oeu',
	'Oeu003547.2' => 'oeu',
	'Oeu004677.1' => 'oeu',
	'Oeu005362.1' => 'oeu',
	'Oeu005833.1' => 'oeu',
	'Oeu005834.1' => 'oeu',
	'Oeu006751.1' => 'oeu',
	'Oeu007084.1' => 'oeu',
	'Oeu007264.1' => 'oeu',
	'Oeu008153.1' => 'oeu',
	'Oeu008228.1' => 'oeu',
	'Oeu008229.1' => 'oeu',
	'Oeu009580.1' => 'oeu',
	'Oeu010110.1' => 'oeu',
	'Oeu011704.1' => 'oeu',
	'Oeu011912.1' => 'oeu',
	'Oeu012057.1' => 'oeu',
	'Oeu012157.1' => 'oeu',
	'Oeu013775.1' => 'oeu',
	'Oeu013806.1' => 'oeu',
	'Oeu016457.1' => 'oeu',
	'Oeu016803.1' => 'oeu',
	'Oeu017243.2' => 'oeu',
	'Oeu017935.1' => 'oeu',
	'Oeu020246.2' => 'oeu',
	'Oeu020990.1' => 'oeu',
	'Oeu021941.1' => 'oeu',
	'Oeu021986.1' => 'oeu',
	'Oeu023578.1' => 'oeu',
	'Oeu024242.1' => 'oeu',
	'Oeu025087.1' => 'oeu',
	'Oeu025093.1' => 'oeu',
	'Oeu025412.1' => 'oeu',
	'Oeu025520.1' => 'oeu',
	'Oeu026473.1' => 'oeu',
	'Oeu027505.1' => 'oeu',
	'Oeu027530.1' => 'oeu',
	'Oeu027794.2' => 'oeu',
	'Oeu028951.1' => 'oeu',
	'Oeu029141.1' => 'oeu',
	'Oeu029231.4' => 'oeu',
	'Oeu029388.1' => 'oeu',
	'Oeu029673.1' => 'oeu',
	'Oeu029674.1' => 'oeu',
	'Oeu029748.1' => 'oeu',
	'Oeu030224.1' => 'oeu',
	'Oeu030243.1' => 'oeu',
	'Oeu030253.1' => 'oeu',
	'Oeu030414.1' => 'oeu',
	'Oeu030415.1' => 'oeu',
	'Oeu030472.1' => 'oeu',
	'Oeu031432.1' => 'oeu',
	'Oeu031697.1' => 'oeu',
	'Oeu032030.1' => 'oeu',
	'Oeu032031.1' => 'oeu',
	'Oeu032075.1' => 'oeu',
	'Oeu032737.1' => 'oeu',
	'Oeu033407.1' => 'oeu',
	'Oeu033485.1' => 'oeu',
	'Oeu034465.1' => 'oeu',
	'Oeu034951.1' => 'oeu',
	'Oeu036281.1' => 'oeu',
	'Oeu036931.1' => 'oeu',
	'Oeu036932.1' => 'oeu',
	'Oeu037340.1' => 'oeu',
	'Oeu037611.1' => 'oeu',
	'Oeu039205.1' => 'oeu',
	'Oeu039325.1' => 'oeu',
	'Oeu040999.1' => 'oeu',
	'Oeu041244.1' => 'oeu',
	'Oeu041682.1' => 'oeu',
	'Oeu041863.1' => 'oeu',
	'Oeu042345.1' => 'oeu',
	'Oeu042346.1' => 'oeu',
	'Oeu042671.1' => 'oeu',
	'Oeu043273.1' => 'oeu',
	'Oeu043573.1' => 'oeu',
	'Oeu044071.1' => 'oeu',
	'Oeu046813.1' => 'oeu',
	'Oeu048160.1' => 'oeu',
	'Oeu048162.1' => 'oeu',
	'Oeu048282.1' => 'oeu',
	'Oeu048297.1' => 'oeu',
	'Oeu048360.1' => 'oeu',
	'Oeu048565.1' => 'oeu',
	'Oeu049268.1' => 'oeu',
	'Oeu049465.1' => 'oeu',
	'Oeu049978.1' => 'oeu',
	'Oeu050628.1' => 'oeu',
	'Oeu050727.1' => 'oeu',
	'Oeu052065.1' => 'oeu',
	'Oeu052582.1' => 'oeu',
	'Oeu053090.1' => 'oeu',
	'Oeu053644.1' => 'oeu',
	'Oeu053713.1' => 'oeu',
	'Oeu055027.1' => 'oeu',
	'Oeu057741.1' => 'oeu',
	'Oeu058973.1' => 'oeu',
	'Oeu060366.1' => 'oeu',
	'Oeu061428.1' => 'oeu',
	'Oeu062087.1' => 'oeu',
	'Oeu062537.1' => 'oeu',
	'Oeu062538.1' => 'oeu',
	'Oeu064387.1' => 'oeu',
	'PGSC0003DMG400002344' => 'stu',
	'PGSC0003DMG400004046' => 'stu',
	'PGSC0003DMG400006418' => 'stu',
	'PGSC0003DMG400008410' => 'stu',
	'PGSC0003DMG400008620' => 'stu',
	'PGSC0003DMG400009504' => 'stu',
	'PGSC0003DMG400009845' => 'stu',
	'PGSC0003DMG400011177' => 'stu',
	'PGSC0003DMG400011629' => 'stu',
	'PGSC0003DMG400013586' => 'stu',
	'PGSC0003DMG400013599' => 'stu',
	'PGSC0003DMG400014534' => 'stu',
	'PGSC0003DMG400016055' => 'stu',
	'PGSC0003DMG400016736' => 'stu',
	'PGSC0003DMG400016866' => 'stu',
	'PGSC0003DMG400017701' => 'stu',
	'PGSC0003DMG400018448' => 'stu',
	'PGSC0003DMG400020751' => 'stu',
	'PGSC0003DMG400021088' => 'stu',
	'PGSC0003DMG400021387' => 'stu',
	'PGSC0003DMG400021640' => 'stu',
	'PGSC0003DMG400021704' => 'stu',
	'PGSC0003DMG400022155' => 'stu',
	'PGSC0003DMG400023544' => 'stu',
	'PGSC0003DMG400023564' => 'stu',
	'PGSC0003DMG400028558' => 'stu',
	'PGSC0003DMG400028618' => 'stu',
	'PGSC0003DMG400029149' => 'stu',
	'PGSC0003DMG400029979' => 'stu',
	'PGSC0003DMG400030069' => 'stu',
	'PGSC0003DMG400031272' => 'stu',
	'PGSC0003DMG400034656' => 'stu',
	'PGSC0003DMG400035151' => 'stu',
	'PGSC0003DMG400035741' => 'stu',
	'PGSC0003DMG400036100' => 'stu',
	'PGSC0003DMG400037683' => 'stu',
	'PGSC0003DMG400038046' => 'stu',
	'PGSC0003DMG400040121' => 'stu',
	'PGSC0003DMG400042113' => 'stu',
	'PGSC0003DMG400042218' => 'stu',
	'PGSC0003DMG400044188' => 'stu',
	'PGSC0003DMG400044323' => 'stu',
	'PGSC0003DMG400045014' => 'stu',
	'PGSC0003DMG400045177' => 'stu',
	'PGSC0003DMG400047199' => 'stu',
	'Potri.017G071366' => 'ptr',
	'RcHm_v2.0_Chr2g0137481' => 'rch',
	'Sc20g0003180' => 'sci',
	'SEGI_00305' => 'sgi',
	'SEGI_02246' => 'sgi',
	'SEGI_03696' => 'sgi',
	'SEGI_05490' => 'sgi',
	'SEGI_05682' => 'sgi',
	'SEGI_05900' => 'sgi',
	'SEGI_06517' => 'sgi',
	'SEGI_12587' => 'sgi',
	'SEGI_13129' => 'sgi',
	'SEGI_16935' => 'sgi',
	'SEGI_18008' => 'sgi',
	'SEGI_18224' => 'sgi',
	'SEGI_20188' => 'sgi',
	'SEGI_20772' => 'sgi',
	'SEGI_20842' => 'sgi',
	'SEGI_22270' => 'sgi',
	'SEGI_22705' => 'sgi',
	'SEGI_23638' => 'sgi',
	'SEGI_23928' => 'sgi',
	'SEGI_24790' => 'sgi',
	'SEGI_28421' => 'sgi',
	'SEGI_28832' => 'sgi',
	'SEGI_29884' => 'sgi',
	'SEGI_30829' => 'sgi',
	'SEGI_35046' => 'sgi',
	'SEGI_35582' => 'sgi',
	'SEGI_37882' => 'sgi',
	'SEGI_39680' => 'sgi',
	'SEGI_40069' => 'sgi',
	'SEGI_40087' => 'sgi',
	'SEGI_41606' => 'sgi',
	'SGA_v2.0_scaffold50G18578' => 'sas',
	'SHI00293' => 'shi',
	'SHI00389' => 'shi',
	'SHI00445' => 'shi',
	'SHI01000' => 'shi',
	'SHI01503' => 'shi',
	'SHI01718' => 'shi',
	'SHI03454' => 'shi',
	'SHI03493' => 'shi',
	'SHI03494' => 'shi',
	'SHI03628' => 'shi',
	'SHI04457' => 'shi',
	'SHI04691' => 'shi',
	'SHI04829' => 'shi',
	'SHI05225' => 'shi',
	'SHI06326' => 'shi',
	'SHI06505' => 'shi',
	'SHI06770' => 'shi',
	'SHI07388' => 'shi',
	'SHI07582' => 'shi',
	'SHI07583' => 'shi',
	'SHI08271' => 'shi',
	'SHI10619' => 'shi',
	'SHI10892' => 'shi',
	'SHI10910' => 'shi',
	'SHI10911' => 'shi',
	'SHI14326' => 'shi',
	'SHI14681' => 'shi',
	'SHI15017' => 'shi',
	'SHI15096' => 'shi',
	'SHI15120' => 'shi',
	'SHI15274' => 'shi',
	'SHI16232' => 'shi',
	'SHI16811' => 'shi',
	'SHI17386' => 'shi',
	'SHI17926' => 'shi',
	'SHI18293' => 'shi',
	'SHI20489' => 'shi',
	'SHI20658' => 'shi',
	'SHI20663' => 'shi',
	'SHI21566' => 'shi',
	'SHI22547' => 'shi',
	'SHI22708' => 'shi',
	'SHI22709' => 'shi',
	'SHI22878' => 'shi',
	'SHI22879' => 'shi',
	'SHI23024' => 'shi',
	'SHI25053' => 'shi',
	'SHI25076' => 'shi',
	'SHI25116' => 'shi',
	'SHI25381' => 'shi',
	'SHI25535' => 'shi',
	'SHI25740' => 'shi',
	'SHI25991' => 'shi',
	'SHI26344' => 'shi',
	'SHI26345' => 'shi',
	'SHI27097' => 'shi',
	'SHI27140' => 'shi',
	'SHI27178' => 'shi',
	'SHI27207' => 'shi',
	'SHI27225' => 'shi',
	'SHI27734' => 'shi',
	'SHI27806' => 'shi',
	'SHI28576' => 'shi',
	'SHI29081' => 'shi',
	'SHI30038' => 'shi',
	'SHI30394' => 'shi',
	'SHI30652' => 'shi',
	'SHI32154' => 'shi',
	'SHI32205' => 'shi',
	'SHI32365' => 'shi',
	'SHI32439' => 'shi',
	'SHI32505' => 'shi',
	'SHI32626' => 'shi',
	'SHI32714' => 'shi',
	'SHI32715' => 'shi',
	'SHI32716' => 'shi',
	'SHI33118' => 'shi',
	'SHI33318' => 'shi',
	'SHI33373' => 'shi',
	'SHI33512' => 'shi',
	'SHI33625' => 'shi',
	'SHI34327' => 'shi',
	'SHI35604' => 'shi',
	'SHI36119' => 'shi',
	'SHI36120' => 'shi',
	'SHI44959' => 'shi',
	'SHI46406' => 'shi',
	'SHI48191' => 'shi',
	'SHI48192' => 'shi',
	'Solyc10g150111.1' => 'sly',
	'Solyc12g062340.2' => 'sly',
	'Sopen00g001750' => 'spe',
	'Sopen00g001820' => 'spe',
	'Sopen00g001830' => 'spe',
	'Sopen00g001890' => 'spe',
	'Sopen00g002240' => 'spe',
	'Sopen00g003950' => 'spe',
	'Sopen00g004130' => 'spe',
	'Sopen00g004810' => 'spe',
	'Sopen00g005120' => 'spe',
	'Sopen00g005190' => 'spe',
	'Sopen00g007000' => 'spe',
	'Sopen00g007210' => 'spe',
	'Sopen00g012840' => 'spe',
	'Sopen00g013060' => 'spe',
	'Sopen00g013610' => 'spe',
	'Sopen00g013630' => 'spe',
	'Sopen01g004610' => 'spe',
	'Sopen01g007660' => 'spe',
	'Sopen01g007750' => 'spe',
	'Sopen01g007760' => 'spe',
	'Sopen01g007770' => 'spe',
	'Sopen01g007860' => 'spe',
	'Sopen01g009130' => 'spe',
	'Sopen01g009820' => 'spe',
	'Sopen01g011240' => 'spe',
	'Sopen01g012740' => 'spe',
	'Sopen01g013840' => 'spe',
	'Sopen01g013850' => 'spe',
	'Sopen01g016140' => 'spe',
	'Sopen01g016150' => 'spe',
	'Sopen01g016830' => 'spe',
	'Sopen01g017260' => 'spe',
	'Sopen01g019000' => 'spe',
	'Sopen01g019690' => 'spe',
	'Sopen01g022160' => 'spe',
	'Sopen01g024000' => 'spe',
	'Sopen01g024670' => 'spe',
	'Sopen01g024770' => 'spe',
	'Sopen01g024900' => 'spe',
	'Sopen01g025130' => 'spe',
	'Sopen01g026370' => 'spe',
	'Sopen01g041640' => 'spe',
	'Sopen01g046930' => 'spe',
	'Sopen02g001360' => 'spe',
	'Sopen02g002010' => 'spe',
	'Sopen02g003600' => 'spe',
	'Sopen02g003730' => 'spe',
	'Sopen02g005430' => 'spe',
	'Sopen02g005510' => 'spe',
	'Sopen02g006840' => 'spe',
	'Sopen02g007390' => 'spe',
	'Sopen02g007420' => 'spe',
	'Sopen02g007540' => 'spe',
	'Sopen02g007920' => 'spe',
	'Sopen02g008960' => 'spe',
	'Sopen02g009450' => 'spe',
	'Sopen02g009460' => 'spe',
	'Sopen02g011320' => 'spe',
	'Sopen02g012680' => 'spe',
	'Sopen02g018090' => 'spe',
	'Sopen02g022140' => 'spe',
	'Sopen03g010330' => 'spe',
	'Sopen03g013130' => 'spe',
	'Sopen03g013180' => 'spe',
	'Sopen03g013230' => 'spe',
	'Sopen03g014110' => 'spe',
	'Sopen03g015260' => 'spe',
	'Sopen03g015790' => 'spe',
	'Sopen03g018360' => 'spe',
	'Sopen03g024470' => 'spe',
	'Sopen03g026800' => 'spe',
	'Sopen04g003180' => 'spe',
	'Sopen04g008260' => 'spe',
	'Sopen04g010320' => 'spe',
	'Sopen04g011020' => 'spe',
	'Sopen04g011200' => 'spe',
	'Sopen04g011280' => 'spe',
	'Sopen04g021910' => 'spe',
	'Sopen04g023870' => 'spe',
	'Sopen05g009880' => 'spe',
	'Sopen05g011580' => 'spe',
	'Sopen05g012230' => 'spe',
	'Sopen05g012500' => 'spe',
	'Sopen05g012560' => 'spe',
	'Sopen05g012570' => 'spe',
	'Sopen05g012760' => 'spe',
	'Sopen05g013710' => 'spe',
	'Sopen05g015050' => 'spe',
	'Sopen05g026090' => 'spe',
	'Sopen05g028020' => 'spe',
	'Sopen05g028610' => 'spe',
	'Sopen05g029300' => 'spe',
	'Sopen06g005520' => 'spe',
	'Sopen06g006750' => 'spe',
	'Sopen06g008160' => 'spe',
	'Sopen06g009120' => 'spe',
	'Sopen06g013550' => 'spe',
	'Sopen06g015340' => 'spe',
	'Sopen06g018330' => 'spe',
	'Sopen06g021630' => 'spe',
	'Sopen06g021650' => 'spe',
	'Sopen07g006730' => 'spe',
	'Sopen07g008690' => 'spe',
	'Sopen07g008700' => 'spe',
	'Sopen07g008720' => 'spe',
	'Sopen07g008870' => 'spe',
	'Sopen07g009400' => 'spe',
	'Sopen07g009410' => 'spe',
	'Sopen07g009470' => 'spe',
	'Sopen07g009540' => 'spe',
	'Sopen07g011060' => 'spe',
	'Sopen07g011110' => 'spe',
	'Sopen07g011820' => 'spe',
	'Sopen07g013260' => 'spe',
	'Sopen07g014740' => 'spe',
	'Sopen07g015160' => 'spe',
	'Sopen07g015230' => 'spe',
	'Sopen07g016240' => 'spe',
	'Sopen07g017200' => 'spe',
	'Sopen07g017810' => 'spe',
	'Sopen07g019030' => 'spe',
	'Sopen07g020430' => 'spe',
	'Sopen07g021010' => 'spe',
	'Sopen07g021340' => 'spe',
	'Sopen07g022950' => 'spe',
	'Sopen07g027860' => 'spe',
	'Sopen08g007820' => 'spe',
	'Sopen08g009330' => 'spe',
	'Sopen08g012310' => 'spe',
	'Sopen08g012560' => 'spe',
	'Sopen08g014040' => 'spe',
	'Sopen08g014650' => 'spe',
	'Sopen08g017020' => 'spe',
	'Sopen08g018300' => 'spe',
	'Sopen08g020530' => 'spe',
	'Sopen09g008590' => 'spe',
	'Sopen09g008780' => 'spe',
	'Sopen09g011540' => 'spe',
	'Sopen09g011920' => 'spe',
	'Sopen09g014170' => 'spe',
	'Sopen09g016520' => 'spe',
	'Sopen09g021030' => 'spe',
	'Sopen09g023110' => 'spe',
	'Sopen09g024750' => 'spe',
	'Sopen09g025230' => 'spe',
	'Sopen09g025600' => 'spe',
	'Sopen09g034660' => 'spe',
	'Sopen10g006700' => 'spe',
	'Sopen10g009130' => 'spe',
	'Sopen10g009140' => 'spe',
	'Sopen10g009560' => 'spe',
	'Sopen10g010340' => 'spe',
	'Sopen10g011040' => 'spe',
	'Sopen10g013650' => 'spe',
	'Sopen10g014130' => 'spe',
	'Sopen10g014140' => 'spe',
	'Sopen10g014760' => 'spe',
	'Sopen10g015080' => 'spe',
	'Sopen10g015830' => 'spe',
	'Sopen10g018240' => 'spe',
	'Sopen10g018300' => 'spe',
	'Sopen10g018350' => 'spe',
	'Sopen10g018460' => 'spe',
	'Sopen10g018670' => 'spe',
	'Sopen10g019040' => 'spe',
	'Sopen10g019330' => 'spe',
	'Sopen10g019340' => 'spe',
	'Sopen10g019360' => 'spe',
	'Sopen10g019370' => 'spe',
	'Sopen10g020620' => 'spe',
	'Sopen10g021550' => 'spe',
	'Sopen10g022160' => 'spe',
	'Sopen10g023540' => 'spe',
	'Sopen10g023570' => 'spe',
	'Sopen10g023580' => 'spe',
	'Sopen10g023600' => 'spe',
	'Sopen10g023620' => 'spe',
	'Sopen10g023650' => 'spe',
	'Sopen10g024800' => 'spe',
	'Sopen10g026170' => 'spe',
	'Sopen11g007790' => 'spe',
	'Sopen11g010170' => 'spe',
	'Sopen11g010580' => 'spe',
	'Sopen11g013420' => 'spe',
	'Sopen11g016330' => 'spe',
	'Sopen11g017010' => 'spe',
	'Sopen11g018110' => 'spe',
	'Sopen11g018960' => 'spe',
	'Sopen11g019000' => 'spe',
	'Sopen11g019970' => 'spe',
	'Sopen11g020340' => 'spe',
	'Sopen11g020970' => 'spe',
	'Sopen12g008510' => 'spe',
	'Sopen12g008910' => 'spe',
	'Sopen12g009010' => 'spe',
	'Sopen12g009120' => 'spe',
	'Sopen12g009340' => 'spe',
	'Sopen12g009580' => 'spe',
	'Sopen12g010190' => 'spe',
	'Sopen12g010320' => 'spe',
	'Sopen12g010370' => 'spe',
	'Sopen12g012140' => 'spe',
	'Sopen12g012700' => 'spe',
	'Sopen12g013490' => 'spe',
	'Sopen12g014290' => 'spe',
	'Sopen12g015060' => 'spe',
	'Sopen12g015610' => 'spe',
	'Sopen12g018380' => 'spe',
	'Sopen12g019150' => 'spe',
	'Sopen12g020560' => 'spe',
	'Sopen12g023320' => 'spe',
	'Sp3g24190' => 'spa',
	'Sp4g07270' => 'spa',
	'Sp4g07530' => 'spa',
	'Sp4g07670' => 'spa',
	'Sp6g09360' => 'spa',
	'Sp7g04180' => 'spa',
	'Sp7g04980' => 'spa',
	'Sp7g08200' => 'spa',
	'Sp7g09660' => 'spa',
	'SpUn0081_0010' => 'spa',
	'THA.LOC104803417' => 'tha',
	'THA.LOC104817059' => 'tha',
	'Thecc.01G188700' => 'tca',
	'Thecc.05G106700' => 'tca',
	'Thecc.06G068800' => 'tca',
	'Thecc.07G189100' => 'tca',
	'Thecc.09G172800' => 'tca',
	'Thhalv10023044m.g' => 'esa',
	'Thhalv10023881m.g' => 'esa',
	'Thhalv10024067m.g' => 'esa'
)
$gf_id = 'HOM05D000691'
$gf_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$gf_types_configuration = array(
	'HOMFAM' => array(
		'order' => '1',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	),
	'ORTHOFAM' => array(
		'order' => '2',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	)
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$allow_async_use = true
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D000691'
)
$data_identifier = 'HOM05D000691'
$data_type = 'gf_id'
$species_gene_counts = array(
	'amhyb' => (int) 18,
	'aly' => (int) 1,
	'atr' => (int) 21,
	'acertr' => (int) 1,
	'cqu' => (int) 90,
	'bol' => (int) 1,
	'can' => (int) 7,
	'cil' => (int) 3,
	'cla' => (int) 15,
	'col' => (int) 1,
	'cpa' => (int) 2,
	'csa' => (int) 7,
	'camsi' => (int) 10,
	'din' => (int) 1,
	'dzi' => (int) 2,
	'bvu' => (int) 18,
	'fve' => (int) 22,
	'gra' => (int) 1,
	'han' => (int) 7,
	'hma' => (int) 9,
	'sun' => (int) 16,
	'lonja' => (int) 46,
	'mes' => (int) 8,
	'mbi' => (int) 2,
	'cme' => (int) 6,
	'oeu' => (int) 110,
	'stu' => (int) 45,
	'ptr' => (int) 1,
	'rch' => (int) 1,
	'sci' => (int) 1,
	'sgi' => (int) 31,
	'sas' => (int) 1,
	'shi' => (int) 89,
	'sly' => (int) 2,
	'spe' => (int) 211,
	'spa' => (int) 10,
	'tha' => (int) 2,
	'tca' => (int) 5,
	'esa' => (int) 3
)
$gf_gene_species = 'esa'
$gf_gene_id = 'Thhalv10024067m.g'
$species_info = array(
	'species' => 'spa',
	'common_name' => 'Schrenkiella parvula',
	'tax_id' => '98039',
	'version' => 'v2.2'
)
$local_species = 'spa'
$disabled = ''
$selected = ''
$num_hits = (int) 1
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Analysis/custom_tree_creation.ctp, line 27
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933

Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]
Code Context
        $disabled    = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";

        $selected    = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";

        $num_hits    = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D000691',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '827',
		'num_species' => '39'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'gf_genes' => array(
		'Ah.01g012340' => 'amhyb',
		'Ah.01g013530' => 'amhyb',
		'Ah.03g143080' => 'amhyb',
		'Ah.06g186750' => 'amhyb',
		'Ah.06g186800' => 'amhyb',
		'Ah.07g200050' => 'amhyb',
		'Ah.08g209110' => 'amhyb',
		'Ah.09g229600' => 'amhyb',
		'Ah.09g229610' => 'amhyb',
		'Ah.10g026490' => 'amhyb',
		'Ah.12g065350' => 'amhyb',
		'Ah.13g069310' => 'amhyb',
		'Ah.14g080130' => 'amhyb',
		'Ah.14g081130' => 'amhyb',
		'Ah.14g081140' => 'amhyb',
		'Ah.16g109160' => 'amhyb',
		'Ah.16g109170' => 'amhyb',
		'Ah.16g109370' => 'amhyb',
		'AL3G47720' => 'aly',
		'ATR0012G060' => 'atr',
		'ATR0026G029' => 'atr',
		'ATR0193G043' => 'atr',
		'ATR0561G076' => 'atr',
		'ATR0561G181' => 'atr',
		'ATR0568G014' => 'atr',
		'ATR0568G114' => 'atr',
		'ATR0620G039' => 'atr',
		'ATR0629G125' => 'atr',
		'ATR0661G583' => 'atr',
		'ATR0686G019' => 'atr',
		'ATR0693G232' => 'atr',
		'ATR0697G104' => 'atr',
		'ATR0789G146' => 'atr',
		'ATR0794G066' => 'atr',
		'ATR1127G127' => 'atr',
		'ATR1131G040' => 'atr',
		'ATR1134G004' => 'atr',
		'ATR1134G095' => 'atr',
		'ATR1152G110' => 'atr',
		'ATR1153G065' => 'atr',
		'Atru.chr3.2296' => 'acertr',
		'AUR62000692' => 'cqu',
		'AUR62001473' => 'cqu',
		'AUR62001812' => 'cqu',
		'AUR62002706' => 'cqu',
		'AUR62003904' => 'cqu',
		'AUR62003905' => 'cqu',
		'AUR62004840' => 'cqu',
		'AUR62005160' => 'cqu',
		'AUR62005604' => 'cqu',
		'AUR62005891' => 'cqu',
		'AUR62007290' => 'cqu',
		'AUR62007502' => 'cqu',
		'AUR62007923' => 'cqu',
		'AUR62009972' => 'cqu',
		'AUR62010488' => 'cqu',
		'AUR62010643' => 'cqu',
		'AUR62012637' => 'cqu',
		'AUR62013492' => 'cqu',
		'AUR62014239' => 'cqu',
		'AUR62014878' => 'cqu',
		'AUR62015857' => 'cqu',
		'AUR62016224' => 'cqu',
		'AUR62017430' => 'cqu',
		'AUR62017467' => 'cqu',
		'AUR62018234' => 'cqu',
		'AUR62019060' => 'cqu',
		'AUR62019607' => 'cqu',
		'AUR62019661' => 'cqu',
		'AUR62022775' => 'cqu',
		'AUR62023603' => 'cqu',
		'AUR62024563' => 'cqu',
		'AUR62026199' => 'cqu',
		'AUR62026905' => 'cqu',
		'AUR62028639' => 'cqu',
		'AUR62029168' => 'cqu',
		'AUR62029551' => 'cqu',
		'AUR62029860' => 'cqu',
		'AUR62030164' => 'cqu',
		'AUR62031208' => 'cqu',
		'AUR62031287' => 'cqu',
		'AUR62031817' => 'cqu',
		'AUR62032126' => 'cqu',
		'AUR62032358' => 'cqu',
		'AUR62032884' => 'cqu',
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		'AUR62033082' => 'cqu',
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		'AUR62038299' => 'cqu',
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		'AUR62040869' => 'cqu',
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		'AUR62041199' => 'cqu',
		'AUR62041334' => 'cqu',
		'AUR62041608' => 'cqu',
		'AUR62041609' => 'cqu',
		'AUR62041833' => 'cqu',
		'AUR62041834' => 'cqu',
		'AUR62042054' => 'cqu',
		'AUR62042134' => 'cqu',
		'AUR62042236' => 'cqu',
		'AUR62042281' => 'cqu',
		'AUR62042593' => 'cqu',
		'AUR62042653' => 'cqu',
		'AUR62043025' => 'cqu',
		'AUR62043026' => 'cqu',
		'AUR62043063' => 'cqu',
		'AUR62043091' => 'cqu',
		'AUR62043320' => 'cqu',
		'BolC5t32558H' => 'bol',
		'CAN.G1036.12' => 'can',
		'CAN.G1432.23' => 'can',
		'CAN.G159.19' => 'can',
		'CAN.G4114.1' => 'can',
		'CAN.G492.85' => 'can',
		'CAN.G500.95' => 'can',
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		'CiPaw.04G054900' => 'cil',
		'CiPaw.05G045400' => 'cil',
		'CiPaw.15G094100' => 'cil',
		'ClCG00G000700' => 'cla',
		'ClCG00G000780' => 'cla',
		'ClCG01G012280' => 'cla',
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		'ClCG02G009810' => 'cla',
		'ClCG03G010170' => 'cla',
		'ClCG03G010260' => 'cla',
		'ClCG04G000770' => 'cla',
		'ClCG05G013980' => 'cla',
		'ClCG06G009110' => 'cla',
		'ClCG06G009120' => 'cla',
		'ClCG08G002190' => 'cla',
		'ClCG09G013830' => 'cla',
		'ClCG10G006760' => 'cla',
		'ClCG11G007310' => 'cla',
		'COL.COLO4_16141' => 'col',
		'Cpa.g.sc202.2' => 'cpa',
		'Cpa.g.sc76.18' => 'cpa',
		'CsaV3_1G031080' => 'csa',
		'CsaV3_4G011870' => 'csa',
		'CsaV3_4G014860' => 'csa',
		'CsaV3_4G021860' => 'csa',
		'CsaV3_6G009880' => 'csa',
		'CsaV3_7G021240' => 'csa',
		'CsaV3_UNG240600' => 'csa',
		'CSS0003516' => 'camsi',
		'CSS0013023' => 'camsi',
		'CSS0017680' => 'camsi',
		'CSS0018551' => 'camsi',
		'CSS0026792' => 'camsi',
		'CSS0028271' => 'camsi',
		'CSS0033603' => 'camsi',
		'CSS0040789' => 'camsi',
		'CSS0045068' => 'camsi',
		'CSS0045803' => 'camsi',
		'Dinv10528' => 'din',
		'Duzib116G0875' => 'dzi',
		'Duzib128G0055' => 'dzi',
		'EL10Ac1g02377' => 'bvu',
		'EL10Ac1g02378' => 'bvu',
		'EL10Ac2g03486' => 'bvu',
		'EL10Ac2g03487' => 'bvu',
		'EL10Ac3g05722' => 'bvu',
		'EL10Ac3g06186' => 'bvu',
		'EL10Ac5g11258' => 'bvu',
		'EL10Ac6g13831' => 'bvu',
		'EL10Ac6g14162' => 'bvu',
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		'EL10Ac8g18762' => 'bvu',
		'EL10Ac9g20847' => 'bvu',
		'EL10As7g23731' => 'bvu',
		'EL10As7g23732' => 'bvu',
		'FvH4_1g23713' => 'fve',
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		'FvH4_2g00262' => 'fve',
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		'FvH4_3g10531' => 'fve',
		'FvH4_3g33536' => 'fve',
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		'FvH4_4g19351' => 'fve',
		'FvH4_4g34281' => 'fve',
		'FvH4_5g03811' => 'fve',
		'FvH4_5g03812' => 'fve',
		'FvH4_5g11822' => 'fve',
		'FvH4_5g31701' => 'fve',
		'FvH4_6g12161' => 'fve',
		'FvH4_6g15222' => 'fve',
		'FvH4_6g15223' => 'fve',
		'FvH4_6g19301' => 'fve',
		'FvH4_6g33011' => 'fve',
		'FvH4_6g50161' => 'fve',
		'FvH4_7g04123' => 'fve',
		'FvH4_c7g00010' => 'fve',
		'Gorai.012G165300' => 'gra',
		'HanXRQChr00c0452g0574871' => 'han',
		'HanXRQChr01g0029471' => 'han',
		'HanXRQChr05g0133501' => 'han',
		'HanXRQChr10g0280141' => 'han',
		'HanXRQChr10g0280631' => 'han',
		'HanXRQChr13g0409991' => 'han',
		'HanXRQChr15g0468361' => 'han',
		'Hma1.2p1_0021F.1_g014270' => 'hma',
		'Hma1.2p1_0026F.1_g016730' => 'hma',
		'Hma1.2p1_0177F.1_g077930' => 'hma',
		'Hma1.2p1_0370F.1_g137540' => 'hma',
		'Hma1.2p1_0637F.1_g193600' => 'hma',
		'Hma1.2p1_1045F.1_g251360' => 'hma',
		'Hma1.2p1_1168F.1_g263120' => 'hma',
		'Hma1.2p1_1640F.1_g295040' => 'hma',
		'Hma1.2p1_2467F.1_g322660' => 'hma',
		'Hund01785' => 'sun',
		'Hund04739' => 'sun',
		'Hund07717' => 'sun',
		'Hund08060' => 'sun',
		'Hund08734' => 'sun',
		'Hund10876' => 'sun',
		'Hund14991' => 'sun',
		'Hund15051' => 'sun',
		'Hund15082' => 'sun',
		'Hund17998' => 'sun',
		'Hund18526' => 'sun',
		'Hund19828' => 'sun',
		'Hund23384' => 'sun',
		'Hund26399' => 'sun',
		'Hund28766' => 'sun',
		'Hund28768' => 'sun',
		'Lj1A487G33' => 'lonja',
		'Lj1A487G34' => 'lonja',
		'Lj1A489G15' => 'lonja',
		'Lj1C1113T3' => 'lonja',
		'Lj1C3T4' => 'lonja',
		'Lj1C763G4' => 'lonja',
		'Lj1P195T27' => 'lonja',
		'Lj1P573T13' => 'lonja',
		'Lj1P895T45' => 'lonja',
		'Lj1P995G28' => 'lonja',
		'Lj2A1125G46' => 'lonja',
		'Lj2C116T7' => 'lonja',
		'Lj2P295T30' => 'lonja',
		'Lj2P476T23' => 'lonja',
		'Lj2P603T27' => 'lonja',
		'Lj2P609T17' => 'lonja',
		'Lj2P727T24' => 'lonja',
		'Lj3C273T2' => 'lonja',
		'Lj3C644G3' => 'lonja',
		'Lj3C644G4' => 'lonja',
		'Lj3P463T4' => 'lonja',
		'Lj3P545T31' => 'lonja',
		'Lj3P820T55' => 'lonja',
		'Lj4C260T12' => 'lonja',
		'Lj4C714G8' => 'lonja',
		'Lj4P131T14' => 'lonja',
		'Lj4P131T15' => 'lonja',
		'Lj5C102G24' => 'lonja',
		'Lj5P491T3' => 'lonja',
		'Lj5P564T12' => 'lonja',
		'Lj5P786T11' => 'lonja',
		'Lj6C97T3' => 'lonja',
		'Lj8P523T19' => 'lonja',
		'Lj9A24G30' => 'lonja',
		'Lj9A424G33' => 'lonja',
		'Lj9C219G10' => 'lonja',
		'Lj9P219T12' => 'lonja',
		'Lj9P705T22' => 'lonja',
		'Lju114C4T7' => 'lonja',
		'Lju1220C5G5' => 'lonja',
		'Lju2092C1G1' => 'lonja',
		'Lju2092C1T0' => 'lonja',
		'Lju225C6G6' => 'lonja',
		'Lju427C2T0' => 'lonja',
		'Lju50C9T4' => 'lonja',
		'Lju926C12T2' => 'lonja',
		'Manes.06G126602' => 'mes',
		'Manes.13G002614' => 'mes',
		'Manes.15G192966' => 'mes',
		'Manes.17G001483' => 'mes',
		'Manes.17G022547' => 'mes',
		'Manes.18G042825' => 'mes',
		'Manes.S026816' => 'mes',
		'Manes.S027416' => 'mes',
		'MBI02_g15234_MAGBIO' => 'mbi',
		'MBI16_g35584_MAGBIO' => 'mbi',
		'MELO3C008948.2' => 'cme',
		'MELO3C010395.2' => 'cme',
		'MELO3C010396.2' => 'cme',
		'MELO3C015759.2' => 'cme',
		'MELO3C022607.2' => 'cme',
		'MELO3C028897.2' => 'cme',
		'Oeu000188.1' => 'oeu',
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		'Oeu033407.1' => 'oeu',
		'Oeu033485.1' => 'oeu',
		'Oeu034465.1' => 'oeu',
		'Oeu034951.1' => 'oeu',
		'Oeu036281.1' => 'oeu',
		'Oeu036931.1' => 'oeu',
		'Oeu036932.1' => 'oeu',
		'Oeu037340.1' => 'oeu',
		'Oeu037611.1' => 'oeu',
		'Oeu039205.1' => 'oeu',
		'Oeu039325.1' => 'oeu',
		'Oeu040999.1' => 'oeu',
		'Oeu041244.1' => 'oeu',
		'Oeu041682.1' => 'oeu',
		'Oeu041863.1' => 'oeu',
		'Oeu042345.1' => 'oeu',
		'Oeu042346.1' => 'oeu',
		'Oeu042671.1' => 'oeu',
		'Oeu043273.1' => 'oeu',
		'Oeu043573.1' => 'oeu',
		'Oeu044071.1' => 'oeu',
		'Oeu046813.1' => 'oeu',
		'Oeu048160.1' => 'oeu',
		'Oeu048162.1' => 'oeu',
		'Oeu048282.1' => 'oeu',
		'Oeu048297.1' => 'oeu',
		'Oeu048360.1' => 'oeu',
		'Oeu048565.1' => 'oeu',
		'Oeu049268.1' => 'oeu',
		'Oeu049465.1' => 'oeu',
		'Oeu049978.1' => 'oeu',
		'Oeu050628.1' => 'oeu',
		'Oeu050727.1' => 'oeu',
		'Oeu052065.1' => 'oeu',
		'Oeu052582.1' => 'oeu',
		'Oeu053090.1' => 'oeu',
		'Oeu053644.1' => 'oeu',
		'Oeu053713.1' => 'oeu',
		'Oeu055027.1' => 'oeu',
		'Oeu057741.1' => 'oeu',
		'Oeu058973.1' => 'oeu',
		'Oeu060366.1' => 'oeu',
		'Oeu061428.1' => 'oeu',
		'Oeu062087.1' => 'oeu',
		'Oeu062537.1' => 'oeu',
		'Oeu062538.1' => 'oeu',
		'Oeu064387.1' => 'oeu',
		'PGSC0003DMG400002344' => 'stu',
		'PGSC0003DMG400004046' => 'stu',
		'PGSC0003DMG400006418' => 'stu',
		'PGSC0003DMG400008410' => 'stu',
		'PGSC0003DMG400008620' => 'stu',
		'PGSC0003DMG400009504' => 'stu',
		'PGSC0003DMG400009845' => 'stu',
		'PGSC0003DMG400011177' => 'stu',
		'PGSC0003DMG400011629' => 'stu',
		'PGSC0003DMG400013586' => 'stu',
		'PGSC0003DMG400013599' => 'stu',
		'PGSC0003DMG400014534' => 'stu',
		'PGSC0003DMG400016055' => 'stu',
		'PGSC0003DMG400016736' => 'stu',
		'PGSC0003DMG400016866' => 'stu',
		'PGSC0003DMG400017701' => 'stu',
		'PGSC0003DMG400018448' => 'stu',
		'PGSC0003DMG400020751' => 'stu',
		'PGSC0003DMG400021088' => 'stu',
		'PGSC0003DMG400021387' => 'stu',
		'PGSC0003DMG400021640' => 'stu',
		'PGSC0003DMG400021704' => 'stu',
		'PGSC0003DMG400022155' => 'stu',
		'PGSC0003DMG400023544' => 'stu',
		'PGSC0003DMG400023564' => 'stu',
		'PGSC0003DMG400028558' => 'stu',
		'PGSC0003DMG400028618' => 'stu',
		'PGSC0003DMG400029149' => 'stu',
		'PGSC0003DMG400029979' => 'stu',
		'PGSC0003DMG400030069' => 'stu',
		'PGSC0003DMG400031272' => 'stu',
		'PGSC0003DMG400034656' => 'stu',
		'PGSC0003DMG400035151' => 'stu',
		'PGSC0003DMG400035741' => 'stu',
		'PGSC0003DMG400036100' => 'stu',
		'PGSC0003DMG400037683' => 'stu',
		'PGSC0003DMG400038046' => 'stu',
		'PGSC0003DMG400040121' => 'stu',
		'PGSC0003DMG400042113' => 'stu',
		'PGSC0003DMG400042218' => 'stu',
		'PGSC0003DMG400044188' => 'stu',
		'PGSC0003DMG400044323' => 'stu',
		'PGSC0003DMG400045014' => 'stu',
		'PGSC0003DMG400045177' => 'stu',
		'PGSC0003DMG400047199' => 'stu',
		'Potri.017G071366' => 'ptr',
		'RcHm_v2.0_Chr2g0137481' => 'rch',
		'Sc20g0003180' => 'sci',
		'SEGI_00305' => 'sgi',
		'SEGI_02246' => 'sgi',
		'SEGI_03696' => 'sgi',
		'SEGI_05490' => 'sgi',
		'SEGI_05682' => 'sgi',
		'SEGI_05900' => 'sgi',
		'SEGI_06517' => 'sgi',
		'SEGI_12587' => 'sgi',
		'SEGI_13129' => 'sgi',
		'SEGI_16935' => 'sgi',
		'SEGI_18008' => 'sgi',
		'SEGI_18224' => 'sgi',
		'SEGI_20188' => 'sgi',
		'SEGI_20772' => 'sgi',
		'SEGI_20842' => 'sgi',
		'SEGI_22270' => 'sgi',
		'SEGI_22705' => 'sgi',
		'SEGI_23638' => 'sgi',
		'SEGI_23928' => 'sgi',
		'SEGI_24790' => 'sgi',
		'SEGI_28421' => 'sgi',
		'SEGI_28832' => 'sgi',
		'SEGI_29884' => 'sgi',
		'SEGI_30829' => 'sgi',
		'SEGI_35046' => 'sgi',
		'SEGI_35582' => 'sgi',
		'SEGI_37882' => 'sgi',
		'SEGI_39680' => 'sgi',
		'SEGI_40069' => 'sgi',
		'SEGI_40087' => 'sgi',
		'SEGI_41606' => 'sgi',
		'SGA_v2.0_scaffold50G18578' => 'sas',
		'SHI00293' => 'shi',
		'SHI00389' => 'shi',
		'SHI00445' => 'shi',
		'SHI01000' => 'shi',
		'SHI01503' => 'shi',
		'SHI01718' => 'shi',
		'SHI03454' => 'shi',
		'SHI03493' => 'shi',
		'SHI03494' => 'shi',
		'SHI03628' => 'shi',
		'SHI04457' => 'shi',
		'SHI04691' => 'shi',
		'SHI04829' => 'shi',
		'SHI05225' => 'shi',
		'SHI06326' => 'shi',
		'SHI06505' => 'shi',
		'SHI06770' => 'shi',
		'SHI07388' => 'shi',
		'SHI07582' => 'shi',
		'SHI07583' => 'shi',
		'SHI08271' => 'shi',
		'SHI10619' => 'shi',
		'SHI10892' => 'shi',
		'SHI10910' => 'shi',
		'SHI10911' => 'shi',
		'SHI14326' => 'shi',
		'SHI14681' => 'shi',
		'SHI15017' => 'shi',
		'SHI15096' => 'shi',
		'SHI15120' => 'shi',
		'SHI15274' => 'shi',
		'SHI16232' => 'shi',
		'SHI16811' => 'shi',
		'SHI17386' => 'shi',
		'SHI17926' => 'shi',
		'SHI18293' => 'shi',
		'SHI20489' => 'shi',
		'SHI20658' => 'shi',
		'SHI20663' => 'shi',
		'SHI21566' => 'shi',
		'SHI22547' => 'shi',
		'SHI22708' => 'shi',
		'SHI22709' => 'shi',
		'SHI22878' => 'shi',
		'SHI22879' => 'shi',
		'SHI23024' => 'shi',
		'SHI25053' => 'shi',
		'SHI25076' => 'shi',
		'SHI25116' => 'shi',
		'SHI25381' => 'shi',
		'SHI25535' => 'shi',
		'SHI25740' => 'shi',
		'SHI25991' => 'shi',
		'SHI26344' => 'shi',
		'SHI26345' => 'shi',
		'SHI27097' => 'shi',
		'SHI27140' => 'shi',
		'SHI27178' => 'shi',
		'SHI27207' => 'shi',
		'SHI27225' => 'shi',
		'SHI27734' => 'shi',
		'SHI27806' => 'shi',
		'SHI28576' => 'shi',
		'SHI29081' => 'shi',
		'SHI30038' => 'shi',
		'SHI30394' => 'shi',
		'SHI30652' => 'shi',
		'SHI32154' => 'shi',
		'SHI32205' => 'shi',
		'SHI32365' => 'shi',
		'SHI32439' => 'shi',
		'SHI32505' => 'shi',
		'SHI32626' => 'shi',
		'SHI32714' => 'shi',
		'SHI32715' => 'shi',
		'SHI32716' => 'shi',
		'SHI33118' => 'shi',
		'SHI33318' => 'shi',
		'SHI33373' => 'shi',
		'SHI33512' => 'shi',
		'SHI33625' => 'shi',
		'SHI34327' => 'shi',
		'SHI35604' => 'shi',
		'SHI36119' => 'shi',
		'SHI36120' => 'shi',
		'SHI44959' => 'shi',
		'SHI46406' => 'shi',
		'SHI48191' => 'shi',
		'SHI48192' => 'shi',
		'Solyc10g150111.1' => 'sly',
		'Solyc12g062340.2' => 'sly',
		'Sopen00g001750' => 'spe',
		'Sopen00g001820' => 'spe',
		'Sopen00g001830' => 'spe',
		'Sopen00g001890' => 'spe',
		'Sopen00g002240' => 'spe',
		'Sopen00g003950' => 'spe',
		'Sopen00g004130' => 'spe',
		'Sopen00g004810' => 'spe',
		'Sopen00g005120' => 'spe',
		'Sopen00g005190' => 'spe',
		'Sopen00g007000' => 'spe',
		'Sopen00g007210' => 'spe',
		'Sopen00g012840' => 'spe',
		'Sopen00g013060' => 'spe',
		'Sopen00g013610' => 'spe',
		'Sopen00g013630' => 'spe',
		'Sopen01g004610' => 'spe',
		'Sopen01g007660' => 'spe',
		'Sopen01g007750' => 'spe',
		'Sopen01g007760' => 'spe',
		'Sopen01g007770' => 'spe',
		'Sopen01g007860' => 'spe',
		'Sopen01g009130' => 'spe',
		'Sopen01g009820' => 'spe',
		'Sopen01g011240' => 'spe',
		'Sopen01g012740' => 'spe',
		'Sopen01g013840' => 'spe',
		'Sopen01g013850' => 'spe',
		'Sopen01g016140' => 'spe',
		'Sopen01g016150' => 'spe',
		'Sopen01g016830' => 'spe',
		'Sopen01g017260' => 'spe',
		'Sopen01g019000' => 'spe',
		'Sopen01g019690' => 'spe',
		'Sopen01g022160' => 'spe',
		'Sopen01g024000' => 'spe',
		'Sopen01g024670' => 'spe',
		'Sopen01g024770' => 'spe',
		'Sopen01g024900' => 'spe',
		'Sopen01g025130' => 'spe',
		'Sopen01g026370' => 'spe',
		'Sopen01g041640' => 'spe',
		'Sopen01g046930' => 'spe',
		'Sopen02g001360' => 'spe',
		'Sopen02g002010' => 'spe',
		'Sopen02g003600' => 'spe',
		'Sopen02g003730' => 'spe',
		'Sopen02g005430' => 'spe',
		'Sopen02g005510' => 'spe',
		'Sopen02g006840' => 'spe',
		'Sopen02g007390' => 'spe',
		'Sopen02g007420' => 'spe',
		'Sopen02g007540' => 'spe',
		'Sopen02g007920' => 'spe',
		'Sopen02g008960' => 'spe',
		'Sopen02g009450' => 'spe',
		'Sopen02g009460' => 'spe',
		'Sopen02g011320' => 'spe',
		'Sopen02g012680' => 'spe',
		'Sopen02g018090' => 'spe',
		'Sopen02g022140' => 'spe',
		'Sopen03g010330' => 'spe',
		'Sopen03g013130' => 'spe',
		'Sopen03g013180' => 'spe',
		'Sopen03g013230' => 'spe',
		'Sopen03g014110' => 'spe',
		'Sopen03g015260' => 'spe',
		'Sopen03g015790' => 'spe',
		'Sopen03g018360' => 'spe',
		'Sopen03g024470' => 'spe',
		'Sopen03g026800' => 'spe',
		'Sopen04g003180' => 'spe',
		'Sopen04g008260' => 'spe',
		'Sopen04g010320' => 'spe',
		'Sopen04g011020' => 'spe',
		'Sopen04g011200' => 'spe',
		'Sopen04g011280' => 'spe',
		'Sopen04g021910' => 'spe',
		'Sopen04g023870' => 'spe',
		'Sopen05g009880' => 'spe',
		'Sopen05g011580' => 'spe',
		'Sopen05g012230' => 'spe',
		'Sopen05g012500' => 'spe',
		'Sopen05g012560' => 'spe',
		'Sopen05g012570' => 'spe',
		'Sopen05g012760' => 'spe',
		'Sopen05g013710' => 'spe',
		'Sopen05g015050' => 'spe',
		'Sopen05g026090' => 'spe',
		'Sopen05g028020' => 'spe',
		'Sopen05g028610' => 'spe',
		'Sopen05g029300' => 'spe',
		'Sopen06g005520' => 'spe',
		'Sopen06g006750' => 'spe',
		'Sopen06g008160' => 'spe',
		'Sopen06g009120' => 'spe',
		'Sopen06g013550' => 'spe',
		'Sopen06g015340' => 'spe',
		'Sopen06g018330' => 'spe',
		'Sopen06g021630' => 'spe',
		'Sopen06g021650' => 'spe',
		'Sopen07g006730' => 'spe',
		'Sopen07g008690' => 'spe',
		'Sopen07g008700' => 'spe',
		'Sopen07g008720' => 'spe',
		'Sopen07g008870' => 'spe',
		'Sopen07g009400' => 'spe',
		'Sopen07g009410' => 'spe',
		'Sopen07g009470' => 'spe',
		'Sopen07g009540' => 'spe',
		'Sopen07g011060' => 'spe',
		'Sopen07g011110' => 'spe',
		'Sopen07g011820' => 'spe',
		'Sopen07g013260' => 'spe',
		'Sopen07g014740' => 'spe',
		'Sopen07g015160' => 'spe',
		'Sopen07g015230' => 'spe',
		'Sopen07g016240' => 'spe',
		'Sopen07g017200' => 'spe',
		'Sopen07g017810' => 'spe',
		'Sopen07g019030' => 'spe',
		'Sopen07g020430' => 'spe',
		'Sopen07g021010' => 'spe',
		'Sopen07g021340' => 'spe',
		'Sopen07g022950' => 'spe',
		'Sopen07g027860' => 'spe',
		'Sopen08g007820' => 'spe',
		'Sopen08g009330' => 'spe',
		'Sopen08g012310' => 'spe',
		'Sopen08g012560' => 'spe',
		'Sopen08g014040' => 'spe',
		'Sopen08g014650' => 'spe',
		'Sopen08g017020' => 'spe',
		'Sopen08g018300' => 'spe',
		'Sopen08g020530' => 'spe',
		'Sopen09g008590' => 'spe',
		'Sopen09g008780' => 'spe',
		'Sopen09g011540' => 'spe',
		'Sopen09g011920' => 'spe',
		'Sopen09g014170' => 'spe',
		'Sopen09g016520' => 'spe',
		'Sopen09g021030' => 'spe',
		'Sopen09g023110' => 'spe',
		'Sopen09g024750' => 'spe',
		'Sopen09g025230' => 'spe',
		'Sopen09g025600' => 'spe',
		'Sopen09g034660' => 'spe',
		'Sopen10g006700' => 'spe',
		'Sopen10g009130' => 'spe',
		'Sopen10g009140' => 'spe',
		'Sopen10g009560' => 'spe',
		'Sopen10g010340' => 'spe',
		'Sopen10g011040' => 'spe',
		'Sopen10g013650' => 'spe',
		'Sopen10g014130' => 'spe',
		'Sopen10g014140' => 'spe',
		'Sopen10g014760' => 'spe',
		'Sopen10g015080' => 'spe',
		'Sopen10g015830' => 'spe',
		'Sopen10g018240' => 'spe',
		'Sopen10g018300' => 'spe',
		'Sopen10g018350' => 'spe',
		'Sopen10g018460' => 'spe',
		'Sopen10g018670' => 'spe',
		'Sopen10g019040' => 'spe',
		'Sopen10g019330' => 'spe',
		'Sopen10g019340' => 'spe',
		'Sopen10g019360' => 'spe',
		'Sopen10g019370' => 'spe',
		'Sopen10g020620' => 'spe',
		'Sopen10g021550' => 'spe',
		'Sopen10g022160' => 'spe',
		'Sopen10g023540' => 'spe',
		'Sopen10g023570' => 'spe',
		'Sopen10g023580' => 'spe',
		'Sopen10g023600' => 'spe',
		'Sopen10g023620' => 'spe',
		'Sopen10g023650' => 'spe',
		'Sopen10g024800' => 'spe',
		'Sopen10g026170' => 'spe',
		'Sopen11g007790' => 'spe',
		'Sopen11g010170' => 'spe',
		'Sopen11g010580' => 'spe',
		'Sopen11g013420' => 'spe',
		'Sopen11g016330' => 'spe',
		'Sopen11g017010' => 'spe',
		'Sopen11g018110' => 'spe',
		'Sopen11g018960' => 'spe',
		'Sopen11g019000' => 'spe',
		'Sopen11g019970' => 'spe',
		'Sopen11g020340' => 'spe',
		'Sopen11g020970' => 'spe',
		'Sopen12g008510' => 'spe',
		'Sopen12g008910' => 'spe',
		'Sopen12g009010' => 'spe',
		'Sopen12g009120' => 'spe',
		'Sopen12g009340' => 'spe',
		'Sopen12g009580' => 'spe',
		'Sopen12g010190' => 'spe',
		'Sopen12g010320' => 'spe',
		'Sopen12g010370' => 'spe',
		'Sopen12g012140' => 'spe',
		'Sopen12g012700' => 'spe',
		'Sopen12g013490' => 'spe',
		'Sopen12g014290' => 'spe',
		'Sopen12g015060' => 'spe',
		'Sopen12g015610' => 'spe',
		'Sopen12g018380' => 'spe',
		'Sopen12g019150' => 'spe',
		'Sopen12g020560' => 'spe',
		'Sopen12g023320' => 'spe',
		'Sp3g24190' => 'spa',
		'Sp4g07270' => 'spa',
		'Sp4g07530' => 'spa',
		'Sp4g07670' => 'spa',
		'Sp6g09360' => 'spa',
		'Sp7g04180' => 'spa',
		'Sp7g04980' => 'spa',
		'Sp7g08200' => 'spa',
		'Sp7g09660' => 'spa',
		'SpUn0081_0010' => 'spa',
		'THA.LOC104803417' => 'tha',
		'THA.LOC104817059' => 'tha',
		'Thecc.01G188700' => 'tca',
		'Thecc.05G106700' => 'tca',
		'Thecc.06G068800' => 'tca',
		'Thecc.07G189100' => 'tca',
		'Thecc.09G172800' => 'tca',
		'Thhalv10023044m.g' => 'esa',
		'Thhalv10023881m.g' => 'esa',
		'Thhalv10024067m.g' => 'esa'
	),
	'gf_id' => 'HOM05D000691',
	'gf_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'gf_types_configuration' => array(
		'HOMFAM' => array(
			'order' => '1',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		),
		'ORTHOFAM' => array(
			'order' => '2',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		)
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'allow_async_use' => true,
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D000691'
	),
	'data_identifier' => 'HOM05D000691',
	'data_type' => 'gf_id'
)
$sidebar_info = array(
	'gf_id' => 'HOM05D000691',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '827',
	'num_species' => '39'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$gf_genes = array(
	'Ah.01g012340' => 'amhyb',
	'Ah.01g013530' => 'amhyb',
	'Ah.03g143080' => 'amhyb',
	'Ah.06g186750' => 'amhyb',
	'Ah.06g186800' => 'amhyb',
	'Ah.07g200050' => 'amhyb',
	'Ah.08g209110' => 'amhyb',
	'Ah.09g229600' => 'amhyb',
	'Ah.09g229610' => 'amhyb',
	'Ah.10g026490' => 'amhyb',
	'Ah.12g065350' => 'amhyb',
	'Ah.13g069310' => 'amhyb',
	'Ah.14g080130' => 'amhyb',
	'Ah.14g081130' => 'amhyb',
	'Ah.14g081140' => 'amhyb',
	'Ah.16g109160' => 'amhyb',
	'Ah.16g109170' => 'amhyb',
	'Ah.16g109370' => 'amhyb',
	'AL3G47720' => 'aly',
	'ATR0012G060' => 'atr',
	'ATR0026G029' => 'atr',
	'ATR0193G043' => 'atr',
	'ATR0561G076' => 'atr',
	'ATR0561G181' => 'atr',
	'ATR0568G014' => 'atr',
	'ATR0568G114' => 'atr',
	'ATR0620G039' => 'atr',
	'ATR0629G125' => 'atr',
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	'SHI06770' => 'shi',
	'SHI07388' => 'shi',
	'SHI07582' => 'shi',
	'SHI07583' => 'shi',
	'SHI08271' => 'shi',
	'SHI10619' => 'shi',
	'SHI10892' => 'shi',
	'SHI10910' => 'shi',
	'SHI10911' => 'shi',
	'SHI14326' => 'shi',
	'SHI14681' => 'shi',
	'SHI15017' => 'shi',
	'SHI15096' => 'shi',
	'SHI15120' => 'shi',
	'SHI15274' => 'shi',
	'SHI16232' => 'shi',
	'SHI16811' => 'shi',
	'SHI17386' => 'shi',
	'SHI17926' => 'shi',
	'SHI18293' => 'shi',
	'SHI20489' => 'shi',
	'SHI20658' => 'shi',
	'SHI20663' => 'shi',
	'SHI21566' => 'shi',
	'SHI22547' => 'shi',
	'SHI22708' => 'shi',
	'SHI22709' => 'shi',
	'SHI22878' => 'shi',
	'SHI22879' => 'shi',
	'SHI23024' => 'shi',
	'SHI25053' => 'shi',
	'SHI25076' => 'shi',
	'SHI25116' => 'shi',
	'SHI25381' => 'shi',
	'SHI25535' => 'shi',
	'SHI25740' => 'shi',
	'SHI25991' => 'shi',
	'SHI26344' => 'shi',
	'SHI26345' => 'shi',
	'SHI27097' => 'shi',
	'SHI27140' => 'shi',
	'SHI27178' => 'shi',
	'SHI27207' => 'shi',
	'SHI27225' => 'shi',
	'SHI27734' => 'shi',
	'SHI27806' => 'shi',
	'SHI28576' => 'shi',
	'SHI29081' => 'shi',
	'SHI30038' => 'shi',
	'SHI30394' => 'shi',
	'SHI30652' => 'shi',
	'SHI32154' => 'shi',
	'SHI32205' => 'shi',
	'SHI32365' => 'shi',
	'SHI32439' => 'shi',
	'SHI32505' => 'shi',
	'SHI32626' => 'shi',
	'SHI32714' => 'shi',
	'SHI32715' => 'shi',
	'SHI32716' => 'shi',
	'SHI33118' => 'shi',
	'SHI33318' => 'shi',
	'SHI33373' => 'shi',
	'SHI33512' => 'shi',
	'SHI33625' => 'shi',
	'SHI34327' => 'shi',
	'SHI35604' => 'shi',
	'SHI36119' => 'shi',
	'SHI36120' => 'shi',
	'SHI44959' => 'shi',
	'SHI46406' => 'shi',
	'SHI48191' => 'shi',
	'SHI48192' => 'shi',
	'Solyc10g150111.1' => 'sly',
	'Solyc12g062340.2' => 'sly',
	'Sopen00g001750' => 'spe',
	'Sopen00g001820' => 'spe',
	'Sopen00g001830' => 'spe',
	'Sopen00g001890' => 'spe',
	'Sopen00g002240' => 'spe',
	'Sopen00g003950' => 'spe',
	'Sopen00g004130' => 'spe',
	'Sopen00g004810' => 'spe',
	'Sopen00g005120' => 'spe',
	'Sopen00g005190' => 'spe',
	'Sopen00g007000' => 'spe',
	'Sopen00g007210' => 'spe',
	'Sopen00g012840' => 'spe',
	'Sopen00g013060' => 'spe',
	'Sopen00g013610' => 'spe',
	'Sopen00g013630' => 'spe',
	'Sopen01g004610' => 'spe',
	'Sopen01g007660' => 'spe',
	'Sopen01g007750' => 'spe',
	'Sopen01g007760' => 'spe',
	'Sopen01g007770' => 'spe',
	'Sopen01g007860' => 'spe',
	'Sopen01g009130' => 'spe',
	'Sopen01g009820' => 'spe',
	'Sopen01g011240' => 'spe',
	'Sopen01g012740' => 'spe',
	'Sopen01g013840' => 'spe',
	'Sopen01g013850' => 'spe',
	'Sopen01g016140' => 'spe',
	'Sopen01g016150' => 'spe',
	'Sopen01g016830' => 'spe',
	'Sopen01g017260' => 'spe',
	'Sopen01g019000' => 'spe',
	'Sopen01g019690' => 'spe',
	'Sopen01g022160' => 'spe',
	'Sopen01g024000' => 'spe',
	'Sopen01g024670' => 'spe',
	'Sopen01g024770' => 'spe',
	'Sopen01g024900' => 'spe',
	'Sopen01g025130' => 'spe',
	'Sopen01g026370' => 'spe',
	'Sopen01g041640' => 'spe',
	'Sopen01g046930' => 'spe',
	'Sopen02g001360' => 'spe',
	'Sopen02g002010' => 'spe',
	'Sopen02g003600' => 'spe',
	'Sopen02g003730' => 'spe',
	'Sopen02g005430' => 'spe',
	'Sopen02g005510' => 'spe',
	'Sopen02g006840' => 'spe',
	'Sopen02g007390' => 'spe',
	'Sopen02g007420' => 'spe',
	'Sopen02g007540' => 'spe',
	'Sopen02g007920' => 'spe',
	'Sopen02g008960' => 'spe',
	'Sopen02g009450' => 'spe',
	'Sopen02g009460' => 'spe',
	'Sopen02g011320' => 'spe',
	'Sopen02g012680' => 'spe',
	'Sopen02g018090' => 'spe',
	'Sopen02g022140' => 'spe',
	'Sopen03g010330' => 'spe',
	'Sopen03g013130' => 'spe',
	'Sopen03g013180' => 'spe',
	'Sopen03g013230' => 'spe',
	'Sopen03g014110' => 'spe',
	'Sopen03g015260' => 'spe',
	'Sopen03g015790' => 'spe',
	'Sopen03g018360' => 'spe',
	'Sopen03g024470' => 'spe',
	'Sopen03g026800' => 'spe',
	'Sopen04g003180' => 'spe',
	'Sopen04g008260' => 'spe',
	'Sopen04g010320' => 'spe',
	'Sopen04g011020' => 'spe',
	'Sopen04g011200' => 'spe',
	'Sopen04g011280' => 'spe',
	'Sopen04g021910' => 'spe',
	'Sopen04g023870' => 'spe',
	'Sopen05g009880' => 'spe',
	'Sopen05g011580' => 'spe',
	'Sopen05g012230' => 'spe',
	'Sopen05g012500' => 'spe',
	'Sopen05g012560' => 'spe',
	'Sopen05g012570' => 'spe',
	'Sopen05g012760' => 'spe',
	'Sopen05g013710' => 'spe',
	'Sopen05g015050' => 'spe',
	'Sopen05g026090' => 'spe',
	'Sopen05g028020' => 'spe',
	'Sopen05g028610' => 'spe',
	'Sopen05g029300' => 'spe',
	'Sopen06g005520' => 'spe',
	'Sopen06g006750' => 'spe',
	'Sopen06g008160' => 'spe',
	'Sopen06g009120' => 'spe',
	'Sopen06g013550' => 'spe',
	'Sopen06g015340' => 'spe',
	'Sopen06g018330' => 'spe',
	'Sopen06g021630' => 'spe',
	'Sopen06g021650' => 'spe',
	'Sopen07g006730' => 'spe',
	'Sopen07g008690' => 'spe',
	'Sopen07g008700' => 'spe',
	'Sopen07g008720' => 'spe',
	'Sopen07g008870' => 'spe',
	'Sopen07g009400' => 'spe',
	'Sopen07g009410' => 'spe',
	'Sopen07g009470' => 'spe',
	'Sopen07g009540' => 'spe',
	'Sopen07g011060' => 'spe',
	'Sopen07g011110' => 'spe',
	'Sopen07g011820' => 'spe',
	'Sopen07g013260' => 'spe',
	'Sopen07g014740' => 'spe',
	'Sopen07g015160' => 'spe',
	'Sopen07g015230' => 'spe',
	'Sopen07g016240' => 'spe',
	'Sopen07g017200' => 'spe',
	'Sopen07g017810' => 'spe',
	'Sopen07g019030' => 'spe',
	'Sopen07g020430' => 'spe',
	'Sopen07g021010' => 'spe',
	'Sopen07g021340' => 'spe',
	'Sopen07g022950' => 'spe',
	'Sopen07g027860' => 'spe',
	'Sopen08g007820' => 'spe',
	'Sopen08g009330' => 'spe',
	'Sopen08g012310' => 'spe',
	'Sopen08g012560' => 'spe',
	'Sopen08g014040' => 'spe',
	'Sopen08g014650' => 'spe',
	'Sopen08g017020' => 'spe',
	'Sopen08g018300' => 'spe',
	'Sopen08g020530' => 'spe',
	'Sopen09g008590' => 'spe',
	'Sopen09g008780' => 'spe',
	'Sopen09g011540' => 'spe',
	'Sopen09g011920' => 'spe',
	'Sopen09g014170' => 'spe',
	'Sopen09g016520' => 'spe',
	'Sopen09g021030' => 'spe',
	'Sopen09g023110' => 'spe',
	'Sopen09g024750' => 'spe',
	'Sopen09g025230' => 'spe',
	'Sopen09g025600' => 'spe',
	'Sopen09g034660' => 'spe',
	'Sopen10g006700' => 'spe',
	'Sopen10g009130' => 'spe',
	'Sopen10g009140' => 'spe',
	'Sopen10g009560' => 'spe',
	'Sopen10g010340' => 'spe',
	'Sopen10g011040' => 'spe',
	'Sopen10g013650' => 'spe',
	'Sopen10g014130' => 'spe',
	'Sopen10g014140' => 'spe',
	'Sopen10g014760' => 'spe',
	'Sopen10g015080' => 'spe',
	'Sopen10g015830' => 'spe',
	'Sopen10g018240' => 'spe',
	'Sopen10g018300' => 'spe',
	'Sopen10g018350' => 'spe',
	'Sopen10g018460' => 'spe',
	'Sopen10g018670' => 'spe',
	'Sopen10g019040' => 'spe',
	'Sopen10g019330' => 'spe',
	'Sopen10g019340' => 'spe',
	'Sopen10g019360' => 'spe',
	'Sopen10g019370' => 'spe',
	'Sopen10g020620' => 'spe',
	'Sopen10g021550' => 'spe',
	'Sopen10g022160' => 'spe',
	'Sopen10g023540' => 'spe',
	'Sopen10g023570' => 'spe',
	'Sopen10g023580' => 'spe',
	'Sopen10g023600' => 'spe',
	'Sopen10g023620' => 'spe',
	'Sopen10g023650' => 'spe',
	'Sopen10g024800' => 'spe',
	'Sopen10g026170' => 'spe',
	'Sopen11g007790' => 'spe',
	'Sopen11g010170' => 'spe',
	'Sopen11g010580' => 'spe',
	'Sopen11g013420' => 'spe',
	'Sopen11g016330' => 'spe',
	'Sopen11g017010' => 'spe',
	'Sopen11g018110' => 'spe',
	'Sopen11g018960' => 'spe',
	'Sopen11g019000' => 'spe',
	'Sopen11g019970' => 'spe',
	'Sopen11g020340' => 'spe',
	'Sopen11g020970' => 'spe',
	'Sopen12g008510' => 'spe',
	'Sopen12g008910' => 'spe',
	'Sopen12g009010' => 'spe',
	'Sopen12g009120' => 'spe',
	'Sopen12g009340' => 'spe',
	'Sopen12g009580' => 'spe',
	'Sopen12g010190' => 'spe',
	'Sopen12g010320' => 'spe',
	'Sopen12g010370' => 'spe',
	'Sopen12g012140' => 'spe',
	'Sopen12g012700' => 'spe',
	'Sopen12g013490' => 'spe',
	'Sopen12g014290' => 'spe',
	'Sopen12g015060' => 'spe',
	'Sopen12g015610' => 'spe',
	'Sopen12g018380' => 'spe',
	'Sopen12g019150' => 'spe',
	'Sopen12g020560' => 'spe',
	'Sopen12g023320' => 'spe',
	'Sp3g24190' => 'spa',
	'Sp4g07270' => 'spa',
	'Sp4g07530' => 'spa',
	'Sp4g07670' => 'spa',
	'Sp6g09360' => 'spa',
	'Sp7g04180' => 'spa',
	'Sp7g04980' => 'spa',
	'Sp7g08200' => 'spa',
	'Sp7g09660' => 'spa',
	'SpUn0081_0010' => 'spa',
	'THA.LOC104803417' => 'tha',
	'THA.LOC104817059' => 'tha',
	'Thecc.01G188700' => 'tca',
	'Thecc.05G106700' => 'tca',
	'Thecc.06G068800' => 'tca',
	'Thecc.07G189100' => 'tca',
	'Thecc.09G172800' => 'tca',
	'Thhalv10023044m.g' => 'esa',
	'Thhalv10023881m.g' => 'esa',
	'Thhalv10024067m.g' => 'esa'
)
$gf_id = 'HOM05D000691'
$gf_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$gf_types_configuration = array(
	'HOMFAM' => array(
		'order' => '1',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	),
	'ORTHOFAM' => array(
		'order' => '2',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	)
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$allow_async_use = true
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D000691'
)
$data_identifier = 'HOM05D000691'
$data_type = 'gf_id'
$species_gene_counts = array(
	'amhyb' => (int) 18,
	'aly' => (int) 1,
	'atr' => (int) 21,
	'acertr' => (int) 1,
	'cqu' => (int) 90,
	'bol' => (int) 1,
	'can' => (int) 7,
	'cil' => (int) 3,
	'cla' => (int) 15,
	'col' => (int) 1,
	'cpa' => (int) 2,
	'csa' => (int) 7,
	'camsi' => (int) 10,
	'din' => (int) 1,
	'dzi' => (int) 2,
	'bvu' => (int) 18,
	'fve' => (int) 22,
	'gra' => (int) 1,
	'han' => (int) 7,
	'hma' => (int) 9,
	'sun' => (int) 16,
	'lonja' => (int) 46,
	'mes' => (int) 8,
	'mbi' => (int) 2,
	'cme' => (int) 6,
	'oeu' => (int) 110,
	'stu' => (int) 45,
	'ptr' => (int) 1,
	'rch' => (int) 1,
	'sci' => (int) 1,
	'sgi' => (int) 31,
	'sas' => (int) 1,
	'shi' => (int) 89,
	'sly' => (int) 2,
	'spe' => (int) 211,
	'spa' => (int) 10,
	'tha' => (int) 2,
	'tca' => (int) 5,
	'esa' => (int) 3
)
$gf_gene_species = 'esa'
$gf_gene_id = 'Thhalv10024067m.g'
$species_info = array(
	'species' => 'sun',
	'common_name' => 'Selenicereus undatus',
	'tax_id' => '176265',
	'version' => 'v1.0'
)
$local_species = 'sun'
$disabled = ''
$selected = ''
$num_hits = (int) 0
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Analysis/custom_tree_creation.ctp, line 27
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933

Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]
Code Context
        $disabled    = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";

        $selected    = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";

        $num_hits    = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D000691',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '827',
		'num_species' => '39'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'gf_genes' => array(
		'Ah.01g012340' => 'amhyb',
		'Ah.01g013530' => 'amhyb',
		'Ah.03g143080' => 'amhyb',
		'Ah.06g186750' => 'amhyb',
		'Ah.06g186800' => 'amhyb',
		'Ah.07g200050' => 'amhyb',
		'Ah.08g209110' => 'amhyb',
		'Ah.09g229600' => 'amhyb',
		'Ah.09g229610' => 'amhyb',
		'Ah.10g026490' => 'amhyb',
		'Ah.12g065350' => 'amhyb',
		'Ah.13g069310' => 'amhyb',
		'Ah.14g080130' => 'amhyb',
		'Ah.14g081130' => 'amhyb',
		'Ah.14g081140' => 'amhyb',
		'Ah.16g109160' => 'amhyb',
		'Ah.16g109170' => 'amhyb',
		'Ah.16g109370' => 'amhyb',
		'AL3G47720' => 'aly',
		'ATR0012G060' => 'atr',
		'ATR0026G029' => 'atr',
		'ATR0193G043' => 'atr',
		'ATR0561G076' => 'atr',
		'ATR0561G181' => 'atr',
		'ATR0568G014' => 'atr',
		'ATR0568G114' => 'atr',
		'ATR0620G039' => 'atr',
		'ATR0629G125' => 'atr',
		'ATR0661G583' => 'atr',
		'ATR0686G019' => 'atr',
		'ATR0693G232' => 'atr',
		'ATR0697G104' => 'atr',
		'ATR0789G146' => 'atr',
		'ATR0794G066' => 'atr',
		'ATR1127G127' => 'atr',
		'ATR1131G040' => 'atr',
		'ATR1134G004' => 'atr',
		'ATR1134G095' => 'atr',
		'ATR1152G110' => 'atr',
		'ATR1153G065' => 'atr',
		'Atru.chr3.2296' => 'acertr',
		'AUR62000692' => 'cqu',
		'AUR62001473' => 'cqu',
		'AUR62001812' => 'cqu',
		'AUR62002706' => 'cqu',
		'AUR62003904' => 'cqu',
		'AUR62003905' => 'cqu',
		'AUR62004840' => 'cqu',
		'AUR62005160' => 'cqu',
		'AUR62005604' => 'cqu',
		'AUR62005891' => 'cqu',
		'AUR62007290' => 'cqu',
		'AUR62007502' => 'cqu',
		'AUR62007923' => 'cqu',
		'AUR62009972' => 'cqu',
		'AUR62010488' => 'cqu',
		'AUR62010643' => 'cqu',
		'AUR62012637' => 'cqu',
		'AUR62013492' => 'cqu',
		'AUR62014239' => 'cqu',
		'AUR62014878' => 'cqu',
		'AUR62015857' => 'cqu',
		'AUR62016224' => 'cqu',
		'AUR62017430' => 'cqu',
		'AUR62017467' => 'cqu',
		'AUR62018234' => 'cqu',
		'AUR62019060' => 'cqu',
		'AUR62019607' => 'cqu',
		'AUR62019661' => 'cqu',
		'AUR62022775' => 'cqu',
		'AUR62023603' => 'cqu',
		'AUR62024563' => 'cqu',
		'AUR62026199' => 'cqu',
		'AUR62026905' => 'cqu',
		'AUR62028639' => 'cqu',
		'AUR62029168' => 'cqu',
		'AUR62029551' => 'cqu',
		'AUR62029860' => 'cqu',
		'AUR62030164' => 'cqu',
		'AUR62031208' => 'cqu',
		'AUR62031287' => 'cqu',
		'AUR62031817' => 'cqu',
		'AUR62032126' => 'cqu',
		'AUR62032358' => 'cqu',
		'AUR62032884' => 'cqu',
		'AUR62032892' => 'cqu',
		'AUR62033082' => 'cqu',
		'AUR62033100' => 'cqu',
		'AUR62033255' => 'cqu',
		'AUR62033698' => 'cqu',
		'AUR62033757' => 'cqu',
		'AUR62034760' => 'cqu',
		'AUR62034860' => 'cqu',
		'AUR62035179' => 'cqu',
		'AUR62035881' => 'cqu',
		'AUR62036824' => 'cqu',
		'AUR62036876' => 'cqu',
		'AUR62037319' => 'cqu',
		'AUR62037362' => 'cqu',
		'AUR62037541' => 'cqu',
		'AUR62037853' => 'cqu',
		'AUR62038299' => 'cqu',
		'AUR62038563' => 'cqu',
		'AUR62038564' => 'cqu',
		'AUR62038594' => 'cqu',
		'AUR62038792' => 'cqu',
		'AUR62038947' => 'cqu',
		'AUR62039030' => 'cqu',
		'AUR62039231' => 'cqu',
		'AUR62039452' => 'cqu',
		'AUR62040334' => 'cqu',
		'AUR62040869' => 'cqu',
		'AUR62040870' => 'cqu',
		'AUR62040916' => 'cqu',
		'AUR62041199' => 'cqu',
		'AUR62041334' => 'cqu',
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		'AUR62041609' => 'cqu',
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		'SHI36120' => 'shi',
		'SHI44959' => 'shi',
		'SHI46406' => 'shi',
		'SHI48191' => 'shi',
		'SHI48192' => 'shi',
		'Solyc10g150111.1' => 'sly',
		'Solyc12g062340.2' => 'sly',
		'Sopen00g001750' => 'spe',
		'Sopen00g001820' => 'spe',
		'Sopen00g001830' => 'spe',
		'Sopen00g001890' => 'spe',
		'Sopen00g002240' => 'spe',
		'Sopen00g003950' => 'spe',
		'Sopen00g004130' => 'spe',
		'Sopen00g004810' => 'spe',
		'Sopen00g005120' => 'spe',
		'Sopen00g005190' => 'spe',
		'Sopen00g007000' => 'spe',
		'Sopen00g007210' => 'spe',
		'Sopen00g012840' => 'spe',
		'Sopen00g013060' => 'spe',
		'Sopen00g013610' => 'spe',
		'Sopen00g013630' => 'spe',
		'Sopen01g004610' => 'spe',
		'Sopen01g007660' => 'spe',
		'Sopen01g007750' => 'spe',
		'Sopen01g007760' => 'spe',
		'Sopen01g007770' => 'spe',
		'Sopen01g007860' => 'spe',
		'Sopen01g009130' => 'spe',
		'Sopen01g009820' => 'spe',
		'Sopen01g011240' => 'spe',
		'Sopen01g012740' => 'spe',
		'Sopen01g013840' => 'spe',
		'Sopen01g013850' => 'spe',
		'Sopen01g016140' => 'spe',
		'Sopen01g016150' => 'spe',
		'Sopen01g016830' => 'spe',
		'Sopen01g017260' => 'spe',
		'Sopen01g019000' => 'spe',
		'Sopen01g019690' => 'spe',
		'Sopen01g022160' => 'spe',
		'Sopen01g024000' => 'spe',
		'Sopen01g024670' => 'spe',
		'Sopen01g024770' => 'spe',
		'Sopen01g024900' => 'spe',
		'Sopen01g025130' => 'spe',
		'Sopen01g026370' => 'spe',
		'Sopen01g041640' => 'spe',
		'Sopen01g046930' => 'spe',
		'Sopen02g001360' => 'spe',
		'Sopen02g002010' => 'spe',
		'Sopen02g003600' => 'spe',
		'Sopen02g003730' => 'spe',
		'Sopen02g005430' => 'spe',
		'Sopen02g005510' => 'spe',
		'Sopen02g006840' => 'spe',
		'Sopen02g007390' => 'spe',
		'Sopen02g007420' => 'spe',
		'Sopen02g007540' => 'spe',
		'Sopen02g007920' => 'spe',
		'Sopen02g008960' => 'spe',
		'Sopen02g009450' => 'spe',
		'Sopen02g009460' => 'spe',
		'Sopen02g011320' => 'spe',
		'Sopen02g012680' => 'spe',
		'Sopen02g018090' => 'spe',
		'Sopen02g022140' => 'spe',
		'Sopen03g010330' => 'spe',
		'Sopen03g013130' => 'spe',
		'Sopen03g013180' => 'spe',
		'Sopen03g013230' => 'spe',
		'Sopen03g014110' => 'spe',
		'Sopen03g015260' => 'spe',
		'Sopen03g015790' => 'spe',
		'Sopen03g018360' => 'spe',
		'Sopen03g024470' => 'spe',
		'Sopen03g026800' => 'spe',
		'Sopen04g003180' => 'spe',
		'Sopen04g008260' => 'spe',
		'Sopen04g010320' => 'spe',
		'Sopen04g011020' => 'spe',
		'Sopen04g011200' => 'spe',
		'Sopen04g011280' => 'spe',
		'Sopen04g021910' => 'spe',
		'Sopen04g023870' => 'spe',
		'Sopen05g009880' => 'spe',
		'Sopen05g011580' => 'spe',
		'Sopen05g012230' => 'spe',
		'Sopen05g012500' => 'spe',
		'Sopen05g012560' => 'spe',
		'Sopen05g012570' => 'spe',
		'Sopen05g012760' => 'spe',
		'Sopen05g013710' => 'spe',
		'Sopen05g015050' => 'spe',
		'Sopen05g026090' => 'spe',
		'Sopen05g028020' => 'spe',
		'Sopen05g028610' => 'spe',
		'Sopen05g029300' => 'spe',
		'Sopen06g005520' => 'spe',
		'Sopen06g006750' => 'spe',
		'Sopen06g008160' => 'spe',
		'Sopen06g009120' => 'spe',
		'Sopen06g013550' => 'spe',
		'Sopen06g015340' => 'spe',
		'Sopen06g018330' => 'spe',
		'Sopen06g021630' => 'spe',
		'Sopen06g021650' => 'spe',
		'Sopen07g006730' => 'spe',
		'Sopen07g008690' => 'spe',
		'Sopen07g008700' => 'spe',
		'Sopen07g008720' => 'spe',
		'Sopen07g008870' => 'spe',
		'Sopen07g009400' => 'spe',
		'Sopen07g009410' => 'spe',
		'Sopen07g009470' => 'spe',
		'Sopen07g009540' => 'spe',
		'Sopen07g011060' => 'spe',
		'Sopen07g011110' => 'spe',
		'Sopen07g011820' => 'spe',
		'Sopen07g013260' => 'spe',
		'Sopen07g014740' => 'spe',
		'Sopen07g015160' => 'spe',
		'Sopen07g015230' => 'spe',
		'Sopen07g016240' => 'spe',
		'Sopen07g017200' => 'spe',
		'Sopen07g017810' => 'spe',
		'Sopen07g019030' => 'spe',
		'Sopen07g020430' => 'spe',
		'Sopen07g021010' => 'spe',
		'Sopen07g021340' => 'spe',
		'Sopen07g022950' => 'spe',
		'Sopen07g027860' => 'spe',
		'Sopen08g007820' => 'spe',
		'Sopen08g009330' => 'spe',
		'Sopen08g012310' => 'spe',
		'Sopen08g012560' => 'spe',
		'Sopen08g014040' => 'spe',
		'Sopen08g014650' => 'spe',
		'Sopen08g017020' => 'spe',
		'Sopen08g018300' => 'spe',
		'Sopen08g020530' => 'spe',
		'Sopen09g008590' => 'spe',
		'Sopen09g008780' => 'spe',
		'Sopen09g011540' => 'spe',
		'Sopen09g011920' => 'spe',
		'Sopen09g014170' => 'spe',
		'Sopen09g016520' => 'spe',
		'Sopen09g021030' => 'spe',
		'Sopen09g023110' => 'spe',
		'Sopen09g024750' => 'spe',
		'Sopen09g025230' => 'spe',
		'Sopen09g025600' => 'spe',
		'Sopen09g034660' => 'spe',
		'Sopen10g006700' => 'spe',
		'Sopen10g009130' => 'spe',
		'Sopen10g009140' => 'spe',
		'Sopen10g009560' => 'spe',
		'Sopen10g010340' => 'spe',
		'Sopen10g011040' => 'spe',
		'Sopen10g013650' => 'spe',
		'Sopen10g014130' => 'spe',
		'Sopen10g014140' => 'spe',
		'Sopen10g014760' => 'spe',
		'Sopen10g015080' => 'spe',
		'Sopen10g015830' => 'spe',
		'Sopen10g018240' => 'spe',
		'Sopen10g018300' => 'spe',
		'Sopen10g018350' => 'spe',
		'Sopen10g018460' => 'spe',
		'Sopen10g018670' => 'spe',
		'Sopen10g019040' => 'spe',
		'Sopen10g019330' => 'spe',
		'Sopen10g019340' => 'spe',
		'Sopen10g019360' => 'spe',
		'Sopen10g019370' => 'spe',
		'Sopen10g020620' => 'spe',
		'Sopen10g021550' => 'spe',
		'Sopen10g022160' => 'spe',
		'Sopen10g023540' => 'spe',
		'Sopen10g023570' => 'spe',
		'Sopen10g023580' => 'spe',
		'Sopen10g023600' => 'spe',
		'Sopen10g023620' => 'spe',
		'Sopen10g023650' => 'spe',
		'Sopen10g024800' => 'spe',
		'Sopen10g026170' => 'spe',
		'Sopen11g007790' => 'spe',
		'Sopen11g010170' => 'spe',
		'Sopen11g010580' => 'spe',
		'Sopen11g013420' => 'spe',
		'Sopen11g016330' => 'spe',
		'Sopen11g017010' => 'spe',
		'Sopen11g018110' => 'spe',
		'Sopen11g018960' => 'spe',
		'Sopen11g019000' => 'spe',
		'Sopen11g019970' => 'spe',
		'Sopen11g020340' => 'spe',
		'Sopen11g020970' => 'spe',
		'Sopen12g008510' => 'spe',
		'Sopen12g008910' => 'spe',
		'Sopen12g009010' => 'spe',
		'Sopen12g009120' => 'spe',
		'Sopen12g009340' => 'spe',
		'Sopen12g009580' => 'spe',
		'Sopen12g010190' => 'spe',
		'Sopen12g010320' => 'spe',
		'Sopen12g010370' => 'spe',
		'Sopen12g012140' => 'spe',
		'Sopen12g012700' => 'spe',
		'Sopen12g013490' => 'spe',
		'Sopen12g014290' => 'spe',
		'Sopen12g015060' => 'spe',
		'Sopen12g015610' => 'spe',
		'Sopen12g018380' => 'spe',
		'Sopen12g019150' => 'spe',
		'Sopen12g020560' => 'spe',
		'Sopen12g023320' => 'spe',
		'Sp3g24190' => 'spa',
		'Sp4g07270' => 'spa',
		'Sp4g07530' => 'spa',
		'Sp4g07670' => 'spa',
		'Sp6g09360' => 'spa',
		'Sp7g04180' => 'spa',
		'Sp7g04980' => 'spa',
		'Sp7g08200' => 'spa',
		'Sp7g09660' => 'spa',
		'SpUn0081_0010' => 'spa',
		'THA.LOC104803417' => 'tha',
		'THA.LOC104817059' => 'tha',
		'Thecc.01G188700' => 'tca',
		'Thecc.05G106700' => 'tca',
		'Thecc.06G068800' => 'tca',
		'Thecc.07G189100' => 'tca',
		'Thecc.09G172800' => 'tca',
		'Thhalv10023044m.g' => 'esa',
		'Thhalv10023881m.g' => 'esa',
		'Thhalv10024067m.g' => 'esa'
	),
	'gf_id' => 'HOM05D000691',
	'gf_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'gf_types_configuration' => array(
		'HOMFAM' => array(
			'order' => '1',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		),
		'ORTHOFAM' => array(
			'order' => '2',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		)
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'allow_async_use' => true,
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D000691'
	),
	'data_identifier' => 'HOM05D000691',
	'data_type' => 'gf_id'
)
$sidebar_info = array(
	'gf_id' => 'HOM05D000691',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '827',
	'num_species' => '39'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$gf_genes = array(
	'Ah.01g012340' => 'amhyb',
	'Ah.01g013530' => 'amhyb',
	'Ah.03g143080' => 'amhyb',
	'Ah.06g186750' => 'amhyb',
	'Ah.06g186800' => 'amhyb',
	'Ah.07g200050' => 'amhyb',
	'Ah.08g209110' => 'amhyb',
	'Ah.09g229600' => 'amhyb',
	'Ah.09g229610' => 'amhyb',
	'Ah.10g026490' => 'amhyb',
	'Ah.12g065350' => 'amhyb',
	'Ah.13g069310' => 'amhyb',
	'Ah.14g080130' => 'amhyb',
	'Ah.14g081130' => 'amhyb',
	'Ah.14g081140' => 'amhyb',
	'Ah.16g109160' => 'amhyb',
	'Ah.16g109170' => 'amhyb',
	'Ah.16g109370' => 'amhyb',
	'AL3G47720' => 'aly',
	'ATR0012G060' => 'atr',
	'ATR0026G029' => 'atr',
	'ATR0193G043' => 'atr',
	'ATR0561G076' => 'atr',
	'ATR0561G181' => 'atr',
	'ATR0568G014' => 'atr',
	'ATR0568G114' => 'atr',
	'ATR0620G039' => 'atr',
	'ATR0629G125' => 'atr',
	'ATR0661G583' => 'atr',
	'ATR0686G019' => 'atr',
	'ATR0693G232' => 'atr',
	'ATR0697G104' => 'atr',
	'ATR0789G146' => 'atr',
	'ATR0794G066' => 'atr',
	'ATR1127G127' => 'atr',
	'ATR1131G040' => 'atr',
	'ATR1134G004' => 'atr',
	'ATR1134G095' => 'atr',
	'ATR1152G110' => 'atr',
	'ATR1153G065' => 'atr',
	'Atru.chr3.2296' => 'acertr',
	'AUR62000692' => 'cqu',
	'AUR62001473' => 'cqu',
	'AUR62001812' => 'cqu',
	'AUR62002706' => 'cqu',
	'AUR62003904' => 'cqu',
	'AUR62003905' => 'cqu',
	'AUR62004840' => 'cqu',
	'AUR62005160' => 'cqu',
	'AUR62005604' => 'cqu',
	'AUR62005891' => 'cqu',
	'AUR62007290' => 'cqu',
	'AUR62007502' => 'cqu',
	'AUR62007923' => 'cqu',
	'AUR62009972' => 'cqu',
	'AUR62010488' => 'cqu',
	'AUR62010643' => 'cqu',
	'AUR62012637' => 'cqu',
	'AUR62013492' => 'cqu',
	'AUR62014239' => 'cqu',
	'AUR62014878' => 'cqu',
	'AUR62015857' => 'cqu',
	'AUR62016224' => 'cqu',
	'AUR62017430' => 'cqu',
	'AUR62017467' => 'cqu',
	'AUR62018234' => 'cqu',
	'AUR62019060' => 'cqu',
	'AUR62019607' => 'cqu',
	'AUR62019661' => 'cqu',
	'AUR62022775' => 'cqu',
	'AUR62023603' => 'cqu',
	'AUR62024563' => 'cqu',
	'AUR62026199' => 'cqu',
	'AUR62026905' => 'cqu',
	'AUR62028639' => 'cqu',
	'AUR62029168' => 'cqu',
	'AUR62029551' => 'cqu',
	'AUR62029860' => 'cqu',
	'AUR62030164' => 'cqu',
	'AUR62031208' => 'cqu',
	'AUR62031287' => 'cqu',
	'AUR62031817' => 'cqu',
	'AUR62032126' => 'cqu',
	'AUR62032358' => 'cqu',
	'AUR62032884' => 'cqu',
	'AUR62032892' => 'cqu',
	'AUR62033082' => 'cqu',
	'AUR62033100' => 'cqu',
	'AUR62033255' => 'cqu',
	'AUR62033698' => 'cqu',
	'AUR62033757' => 'cqu',
	'AUR62034760' => 'cqu',
	'AUR62034860' => 'cqu',
	'AUR62035179' => 'cqu',
	'AUR62035881' => 'cqu',
	'AUR62036824' => 'cqu',
	'AUR62036876' => 'cqu',
	'AUR62037319' => 'cqu',
	'AUR62037362' => 'cqu',
	'AUR62037541' => 'cqu',
	'AUR62037853' => 'cqu',
	'AUR62038299' => 'cqu',
	'AUR62038563' => 'cqu',
	'AUR62038564' => 'cqu',
	'AUR62038594' => 'cqu',
	'AUR62038792' => 'cqu',
	'AUR62038947' => 'cqu',
	'AUR62039030' => 'cqu',
	'AUR62039231' => 'cqu',
	'AUR62039452' => 'cqu',
	'AUR62040334' => 'cqu',
	'AUR62040869' => 'cqu',
	'AUR62040870' => 'cqu',
	'AUR62040916' => 'cqu',
	'AUR62041199' => 'cqu',
	'AUR62041334' => 'cqu',
	'AUR62041608' => 'cqu',
	'AUR62041609' => 'cqu',
	'AUR62041833' => 'cqu',
	'AUR62041834' => 'cqu',
	'AUR62042054' => 'cqu',
	'AUR62042134' => 'cqu',
	'AUR62042236' => 'cqu',
	'AUR62042281' => 'cqu',
	'AUR62042593' => 'cqu',
	'AUR62042653' => 'cqu',
	'AUR62043025' => 'cqu',
	'AUR62043026' => 'cqu',
	'AUR62043063' => 'cqu',
	'AUR62043091' => 'cqu',
	'AUR62043320' => 'cqu',
	'BolC5t32558H' => 'bol',
	'CAN.G1036.12' => 'can',
	'CAN.G1432.23' => 'can',
	'CAN.G159.19' => 'can',
	'CAN.G4114.1' => 'can',
	'CAN.G492.85' => 'can',
	'CAN.G500.95' => 'can',
	'CAN.G93.31' => 'can',
	'CiPaw.04G054900' => 'cil',
	'CiPaw.05G045400' => 'cil',
	'CiPaw.15G094100' => 'cil',
	'ClCG00G000700' => 'cla',
	'ClCG00G000780' => 'cla',
	'ClCG01G012280' => 'cla',
	'ClCG02G006140' => 'cla',
	'ClCG02G009810' => 'cla',
	'ClCG03G010170' => 'cla',
	'ClCG03G010260' => 'cla',
	'ClCG04G000770' => 'cla',
	'ClCG05G013980' => 'cla',
	'ClCG06G009110' => 'cla',
	'ClCG06G009120' => 'cla',
	'ClCG08G002190' => 'cla',
	'ClCG09G013830' => 'cla',
	'ClCG10G006760' => 'cla',
	'ClCG11G007310' => 'cla',
	'COL.COLO4_16141' => 'col',
	'Cpa.g.sc202.2' => 'cpa',
	'Cpa.g.sc76.18' => 'cpa',
	'CsaV3_1G031080' => 'csa',
	'CsaV3_4G011870' => 'csa',
	'CsaV3_4G014860' => 'csa',
	'CsaV3_4G021860' => 'csa',
	'CsaV3_6G009880' => 'csa',
	'CsaV3_7G021240' => 'csa',
	'CsaV3_UNG240600' => 'csa',
	'CSS0003516' => 'camsi',
	'CSS0013023' => 'camsi',
	'CSS0017680' => 'camsi',
	'CSS0018551' => 'camsi',
	'CSS0026792' => 'camsi',
	'CSS0028271' => 'camsi',
	'CSS0033603' => 'camsi',
	'CSS0040789' => 'camsi',
	'CSS0045068' => 'camsi',
	'CSS0045803' => 'camsi',
	'Dinv10528' => 'din',
	'Duzib116G0875' => 'dzi',
	'Duzib128G0055' => 'dzi',
	'EL10Ac1g02377' => 'bvu',
	'EL10Ac1g02378' => 'bvu',
	'EL10Ac2g03486' => 'bvu',
	'EL10Ac2g03487' => 'bvu',
	'EL10Ac3g05722' => 'bvu',
	'EL10Ac3g06186' => 'bvu',
	'EL10Ac5g11258' => 'bvu',
	'EL10Ac6g13831' => 'bvu',
	'EL10Ac6g14162' => 'bvu',
	'EL10Ac6g14316' => 'bvu',
	'EL10Ac6g14317' => 'bvu',
	'EL10Ac6g14588' => 'bvu',
	'EL10Ac7g16302' => 'bvu',
	'EL10Ac7g16543' => 'bvu',
	'EL10Ac8g18762' => 'bvu',
	'EL10Ac9g20847' => 'bvu',
	'EL10As7g23731' => 'bvu',
	'EL10As7g23732' => 'bvu',
	'FvH4_1g23713' => 'fve',
	'FvH4_2g00261' => 'fve',
	'FvH4_2g00262' => 'fve',
	'FvH4_2g15681' => 'fve',
	'FvH4_2g17851' => 'fve',
	'FvH4_3g10531' => 'fve',
	'FvH4_3g33536' => 'fve',
	'FvH4_4g03471' => 'fve',
	'FvH4_4g19351' => 'fve',
	'FvH4_4g34281' => 'fve',
	'FvH4_5g03811' => 'fve',
	'FvH4_5g03812' => 'fve',
	'FvH4_5g11822' => 'fve',
	'FvH4_5g31701' => 'fve',
	'FvH4_6g12161' => 'fve',
	'FvH4_6g15222' => 'fve',
	'FvH4_6g15223' => 'fve',
	'FvH4_6g19301' => 'fve',
	'FvH4_6g33011' => 'fve',
	'FvH4_6g50161' => 'fve',
	'FvH4_7g04123' => 'fve',
	'FvH4_c7g00010' => 'fve',
	'Gorai.012G165300' => 'gra',
	'HanXRQChr00c0452g0574871' => 'han',
	'HanXRQChr01g0029471' => 'han',
	'HanXRQChr05g0133501' => 'han',
	'HanXRQChr10g0280141' => 'han',
	'HanXRQChr10g0280631' => 'han',
	'HanXRQChr13g0409991' => 'han',
	'HanXRQChr15g0468361' => 'han',
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	'Sopen09g025230' => 'spe',
	'Sopen09g025600' => 'spe',
	'Sopen09g034660' => 'spe',
	'Sopen10g006700' => 'spe',
	'Sopen10g009130' => 'spe',
	'Sopen10g009140' => 'spe',
	'Sopen10g009560' => 'spe',
	'Sopen10g010340' => 'spe',
	'Sopen10g011040' => 'spe',
	'Sopen10g013650' => 'spe',
	'Sopen10g014130' => 'spe',
	'Sopen10g014140' => 'spe',
	'Sopen10g014760' => 'spe',
	'Sopen10g015080' => 'spe',
	'Sopen10g015830' => 'spe',
	'Sopen10g018240' => 'spe',
	'Sopen10g018300' => 'spe',
	'Sopen10g018350' => 'spe',
	'Sopen10g018460' => 'spe',
	'Sopen10g018670' => 'spe',
	'Sopen10g019040' => 'spe',
	'Sopen10g019330' => 'spe',
	'Sopen10g019340' => 'spe',
	'Sopen10g019360' => 'spe',
	'Sopen10g019370' => 'spe',
	'Sopen10g020620' => 'spe',
	'Sopen10g021550' => 'spe',
	'Sopen10g022160' => 'spe',
	'Sopen10g023540' => 'spe',
	'Sopen10g023570' => 'spe',
	'Sopen10g023580' => 'spe',
	'Sopen10g023600' => 'spe',
	'Sopen10g023620' => 'spe',
	'Sopen10g023650' => 'spe',
	'Sopen10g024800' => 'spe',
	'Sopen10g026170' => 'spe',
	'Sopen11g007790' => 'spe',
	'Sopen11g010170' => 'spe',
	'Sopen11g010580' => 'spe',
	'Sopen11g013420' => 'spe',
	'Sopen11g016330' => 'spe',
	'Sopen11g017010' => 'spe',
	'Sopen11g018110' => 'spe',
	'Sopen11g018960' => 'spe',
	'Sopen11g019000' => 'spe',
	'Sopen11g019970' => 'spe',
	'Sopen11g020340' => 'spe',
	'Sopen11g020970' => 'spe',
	'Sopen12g008510' => 'spe',
	'Sopen12g008910' => 'spe',
	'Sopen12g009010' => 'spe',
	'Sopen12g009120' => 'spe',
	'Sopen12g009340' => 'spe',
	'Sopen12g009580' => 'spe',
	'Sopen12g010190' => 'spe',
	'Sopen12g010320' => 'spe',
	'Sopen12g010370' => 'spe',
	'Sopen12g012140' => 'spe',
	'Sopen12g012700' => 'spe',
	'Sopen12g013490' => 'spe',
	'Sopen12g014290' => 'spe',
	'Sopen12g015060' => 'spe',
	'Sopen12g015610' => 'spe',
	'Sopen12g018380' => 'spe',
	'Sopen12g019150' => 'spe',
	'Sopen12g020560' => 'spe',
	'Sopen12g023320' => 'spe',
	'Sp3g24190' => 'spa',
	'Sp4g07270' => 'spa',
	'Sp4g07530' => 'spa',
	'Sp4g07670' => 'spa',
	'Sp6g09360' => 'spa',
	'Sp7g04180' => 'spa',
	'Sp7g04980' => 'spa',
	'Sp7g08200' => 'spa',
	'Sp7g09660' => 'spa',
	'SpUn0081_0010' => 'spa',
	'THA.LOC104803417' => 'tha',
	'THA.LOC104817059' => 'tha',
	'Thecc.01G188700' => 'tca',
	'Thecc.05G106700' => 'tca',
	'Thecc.06G068800' => 'tca',
	'Thecc.07G189100' => 'tca',
	'Thecc.09G172800' => 'tca',
	'Thhalv10023044m.g' => 'esa',
	'Thhalv10023881m.g' => 'esa',
	'Thhalv10024067m.g' => 'esa'
)
$gf_id = 'HOM05D000691'
$gf_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$gf_types_configuration = array(
	'HOMFAM' => array(
		'order' => '1',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	),
	'ORTHOFAM' => array(
		'order' => '2',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	)
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$allow_async_use = true
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D000691'
)
$data_identifier = 'HOM05D000691'
$data_type = 'gf_id'
$species_gene_counts = array(
	'amhyb' => (int) 18,
	'aly' => (int) 1,
	'atr' => (int) 21,
	'acertr' => (int) 1,
	'cqu' => (int) 90,
	'bol' => (int) 1,
	'can' => (int) 7,
	'cil' => (int) 3,
	'cla' => (int) 15,
	'col' => (int) 1,
	'cpa' => (int) 2,
	'csa' => (int) 7,
	'camsi' => (int) 10,
	'din' => (int) 1,
	'dzi' => (int) 2,
	'bvu' => (int) 18,
	'fve' => (int) 22,
	'gra' => (int) 1,
	'han' => (int) 7,
	'hma' => (int) 9,
	'sun' => (int) 16,
	'lonja' => (int) 46,
	'mes' => (int) 8,
	'mbi' => (int) 2,
	'cme' => (int) 6,
	'oeu' => (int) 110,
	'stu' => (int) 45,
	'ptr' => (int) 1,
	'rch' => (int) 1,
	'sci' => (int) 1,
	'sgi' => (int) 31,
	'sas' => (int) 1,
	'shi' => (int) 89,
	'sly' => (int) 2,
	'spe' => (int) 211,
	'spa' => (int) 10,
	'tha' => (int) 2,
	'tca' => (int) 5,
	'esa' => (int) 3
)
$gf_gene_species = 'esa'
$gf_gene_id = 'Thhalv10024067m.g'
$species_info = array(
	'species' => 'sgi',
	'common_name' => 'Sequoiadendron giganteum',
	'tax_id' => '99814',
	'version' => 'V2.0'
)
$local_species = 'sgi'
$disabled = ''
$selected = ''
$num_hits = (int) 1
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Analysis/custom_tree_creation.ctp, line 27
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933

Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]
Code Context
        $disabled    = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";

        $selected    = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";

        $num_hits    = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D000691',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '827',
		'num_species' => '39'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'gf_genes' => array(
		'Ah.01g012340' => 'amhyb',
		'Ah.01g013530' => 'amhyb',
		'Ah.03g143080' => 'amhyb',
		'Ah.06g186750' => 'amhyb',
		'Ah.06g186800' => 'amhyb',
		'Ah.07g200050' => 'amhyb',
		'Ah.08g209110' => 'amhyb',
		'Ah.09g229600' => 'amhyb',
		'Ah.09g229610' => 'amhyb',
		'Ah.10g026490' => 'amhyb',
		'Ah.12g065350' => 'amhyb',
		'Ah.13g069310' => 'amhyb',
		'Ah.14g080130' => 'amhyb',
		'Ah.14g081130' => 'amhyb',
		'Ah.14g081140' => 'amhyb',
		'Ah.16g109160' => 'amhyb',
		'Ah.16g109170' => 'amhyb',
		'Ah.16g109370' => 'amhyb',
		'AL3G47720' => 'aly',
		'ATR0012G060' => 'atr',
		'ATR0026G029' => 'atr',
		'ATR0193G043' => 'atr',
		'ATR0561G076' => 'atr',
		'ATR0561G181' => 'atr',
		'ATR0568G014' => 'atr',
		'ATR0568G114' => 'atr',
		'ATR0620G039' => 'atr',
		'ATR0629G125' => 'atr',
		'ATR0661G583' => 'atr',
		'ATR0686G019' => 'atr',
		'ATR0693G232' => 'atr',
		'ATR0697G104' => 'atr',
		'ATR0789G146' => 'atr',
		'ATR0794G066' => 'atr',
		'ATR1127G127' => 'atr',
		'ATR1131G040' => 'atr',
		'ATR1134G004' => 'atr',
		'ATR1134G095' => 'atr',
		'ATR1152G110' => 'atr',
		'ATR1153G065' => 'atr',
		'Atru.chr3.2296' => 'acertr',
		'AUR62000692' => 'cqu',
		'AUR62001473' => 'cqu',
		'AUR62001812' => 'cqu',
		'AUR62002706' => 'cqu',
		'AUR62003904' => 'cqu',
		'AUR62003905' => 'cqu',
		'AUR62004840' => 'cqu',
		'AUR62005160' => 'cqu',
		'AUR62005604' => 'cqu',
		'AUR62005891' => 'cqu',
		'AUR62007290' => 'cqu',
		'AUR62007502' => 'cqu',
		'AUR62007923' => 'cqu',
		'AUR62009972' => 'cqu',
		'AUR62010488' => 'cqu',
		'AUR62010643' => 'cqu',
		'AUR62012637' => 'cqu',
		'AUR62013492' => 'cqu',
		'AUR62014239' => 'cqu',
		'AUR62014878' => 'cqu',
		'AUR62015857' => 'cqu',
		'AUR62016224' => 'cqu',
		'AUR62017430' => 'cqu',
		'AUR62017467' => 'cqu',
		'AUR62018234' => 'cqu',
		'AUR62019060' => 'cqu',
		'AUR62019607' => 'cqu',
		'AUR62019661' => 'cqu',
		'AUR62022775' => 'cqu',
		'AUR62023603' => 'cqu',
		'AUR62024563' => 'cqu',
		'AUR62026199' => 'cqu',
		'AUR62026905' => 'cqu',
		'AUR62028639' => 'cqu',
		'AUR62029168' => 'cqu',
		'AUR62029551' => 'cqu',
		'AUR62029860' => 'cqu',
		'AUR62030164' => 'cqu',
		'AUR62031208' => 'cqu',
		'AUR62031287' => 'cqu',
		'AUR62031817' => 'cqu',
		'AUR62032126' => 'cqu',
		'AUR62032358' => 'cqu',
		'AUR62032884' => 'cqu',
		'AUR62032892' => 'cqu',
		'AUR62033082' => 'cqu',
		'AUR62033100' => 'cqu',
		'AUR62033255' => 'cqu',
		'AUR62033698' => 'cqu',
		'AUR62033757' => 'cqu',
		'AUR62034760' => 'cqu',
		'AUR62034860' => 'cqu',
		'AUR62035179' => 'cqu',
		'AUR62035881' => 'cqu',
		'AUR62036824' => 'cqu',
		'AUR62036876' => 'cqu',
		'AUR62037319' => 'cqu',
		'AUR62037362' => 'cqu',
		'AUR62037541' => 'cqu',
		'AUR62037853' => 'cqu',
		'AUR62038299' => 'cqu',
		'AUR62038563' => 'cqu',
		'AUR62038564' => 'cqu',
		'AUR62038594' => 'cqu',
		'AUR62038792' => 'cqu',
		'AUR62038947' => 'cqu',
		'AUR62039030' => 'cqu',
		'AUR62039231' => 'cqu',
		'AUR62039452' => 'cqu',
		'AUR62040334' => 'cqu',
		'AUR62040869' => 'cqu',
		'AUR62040870' => 'cqu',
		'AUR62040916' => 'cqu',
		'AUR62041199' => 'cqu',
		'AUR62041334' => 'cqu',
		'AUR62041608' => 'cqu',
		'AUR62041609' => 'cqu',
		'AUR62041833' => 'cqu',
		'AUR62041834' => 'cqu',
		'AUR62042054' => 'cqu',
		'AUR62042134' => 'cqu',
		'AUR62042236' => 'cqu',
		'AUR62042281' => 'cqu',
		'AUR62042593' => 'cqu',
		'AUR62042653' => 'cqu',
		'AUR62043025' => 'cqu',
		'AUR62043026' => 'cqu',
		'AUR62043063' => 'cqu',
		'AUR62043091' => 'cqu',
		'AUR62043320' => 'cqu',
		'BolC5t32558H' => 'bol',
		'CAN.G1036.12' => 'can',
		'CAN.G1432.23' => 'can',
		'CAN.G159.19' => 'can',
		'CAN.G4114.1' => 'can',
		'CAN.G492.85' => 'can',
		'CAN.G500.95' => 'can',
		'CAN.G93.31' => 'can',
		'CiPaw.04G054900' => 'cil',
		'CiPaw.05G045400' => 'cil',
		'CiPaw.15G094100' => 'cil',
		'ClCG00G000700' => 'cla',
		'ClCG00G000780' => 'cla',
		'ClCG01G012280' => 'cla',
		'ClCG02G006140' => 'cla',
		'ClCG02G009810' => 'cla',
		'ClCG03G010170' => 'cla',
		'ClCG03G010260' => 'cla',
		'ClCG04G000770' => 'cla',
		'ClCG05G013980' => 'cla',
		'ClCG06G009110' => 'cla',
		'ClCG06G009120' => 'cla',
		'ClCG08G002190' => 'cla',
		'ClCG09G013830' => 'cla',
		'ClCG10G006760' => 'cla',
		'ClCG11G007310' => 'cla',
		'COL.COLO4_16141' => 'col',
		'Cpa.g.sc202.2' => 'cpa',
		'Cpa.g.sc76.18' => 'cpa',
		'CsaV3_1G031080' => 'csa',
		'CsaV3_4G011870' => 'csa',
		'CsaV3_4G014860' => 'csa',
		'CsaV3_4G021860' => 'csa',
		'CsaV3_6G009880' => 'csa',
		'CsaV3_7G021240' => 'csa',
		'CsaV3_UNG240600' => 'csa',
		'CSS0003516' => 'camsi',
		'CSS0013023' => 'camsi',
		'CSS0017680' => 'camsi',
		'CSS0018551' => 'camsi',
		'CSS0026792' => 'camsi',
		'CSS0028271' => 'camsi',
		'CSS0033603' => 'camsi',
		'CSS0040789' => 'camsi',
		'CSS0045068' => 'camsi',
		'CSS0045803' => 'camsi',
		'Dinv10528' => 'din',
		'Duzib116G0875' => 'dzi',
		'Duzib128G0055' => 'dzi',
		'EL10Ac1g02377' => 'bvu',
		'EL10Ac1g02378' => 'bvu',
		'EL10Ac2g03486' => 'bvu',
		'EL10Ac2g03487' => 'bvu',
		'EL10Ac3g05722' => 'bvu',
		'EL10Ac3g06186' => 'bvu',
		'EL10Ac5g11258' => 'bvu',
		'EL10Ac6g13831' => 'bvu',
		'EL10Ac6g14162' => 'bvu',
		'EL10Ac6g14316' => 'bvu',
		'EL10Ac6g14317' => 'bvu',
		'EL10Ac6g14588' => 'bvu',
		'EL10Ac7g16302' => 'bvu',
		'EL10Ac7g16543' => 'bvu',
		'EL10Ac8g18762' => 'bvu',
		'EL10Ac9g20847' => 'bvu',
		'EL10As7g23731' => 'bvu',
		'EL10As7g23732' => 'bvu',
		'FvH4_1g23713' => 'fve',
		'FvH4_2g00261' => 'fve',
		'FvH4_2g00262' => 'fve',
		'FvH4_2g15681' => 'fve',
		'FvH4_2g17851' => 'fve',
		'FvH4_3g10531' => 'fve',
		'FvH4_3g33536' => 'fve',
		'FvH4_4g03471' => 'fve',
		'FvH4_4g19351' => 'fve',
		'FvH4_4g34281' => 'fve',
		'FvH4_5g03811' => 'fve',
		'FvH4_5g03812' => 'fve',
		'FvH4_5g11822' => 'fve',
		'FvH4_5g31701' => 'fve',
		'FvH4_6g12161' => 'fve',
		'FvH4_6g15222' => 'fve',
		'FvH4_6g15223' => 'fve',
		'FvH4_6g19301' => 'fve',
		'FvH4_6g33011' => 'fve',
		'FvH4_6g50161' => 'fve',
		'FvH4_7g04123' => 'fve',
		'FvH4_c7g00010' => 'fve',
		'Gorai.012G165300' => 'gra',
		'HanXRQChr00c0452g0574871' => 'han',
		'HanXRQChr01g0029471' => 'han',
		'HanXRQChr05g0133501' => 'han',
		'HanXRQChr10g0280141' => 'han',
		'HanXRQChr10g0280631' => 'han',
		'HanXRQChr13g0409991' => 'han',
		'HanXRQChr15g0468361' => 'han',
		'Hma1.2p1_0021F.1_g014270' => 'hma',
		'Hma1.2p1_0026F.1_g016730' => 'hma',
		'Hma1.2p1_0177F.1_g077930' => 'hma',
		'Hma1.2p1_0370F.1_g137540' => 'hma',
		'Hma1.2p1_0637F.1_g193600' => 'hma',
		'Hma1.2p1_1045F.1_g251360' => 'hma',
		'Hma1.2p1_1168F.1_g263120' => 'hma',
		'Hma1.2p1_1640F.1_g295040' => 'hma',
		'Hma1.2p1_2467F.1_g322660' => 'hma',
		'Hund01785' => 'sun',
		'Hund04739' => 'sun',
		'Hund07717' => 'sun',
		'Hund08060' => 'sun',
		'Hund08734' => 'sun',
		'Hund10876' => 'sun',
		'Hund14991' => 'sun',
		'Hund15051' => 'sun',
		'Hund15082' => 'sun',
		'Hund17998' => 'sun',
		'Hund18526' => 'sun',
		'Hund19828' => 'sun',
		'Hund23384' => 'sun',
		'Hund26399' => 'sun',
		'Hund28766' => 'sun',
		'Hund28768' => 'sun',
		'Lj1A487G33' => 'lonja',
		'Lj1A487G34' => 'lonja',
		'Lj1A489G15' => 'lonja',
		'Lj1C1113T3' => 'lonja',
		'Lj1C3T4' => 'lonja',
		'Lj1C763G4' => 'lonja',
		'Lj1P195T27' => 'lonja',
		'Lj1P573T13' => 'lonja',
		'Lj1P895T45' => 'lonja',
		'Lj1P995G28' => 'lonja',
		'Lj2A1125G46' => 'lonja',
		'Lj2C116T7' => 'lonja',
		'Lj2P295T30' => 'lonja',
		'Lj2P476T23' => 'lonja',
		'Lj2P603T27' => 'lonja',
		'Lj2P609T17' => 'lonja',
		'Lj2P727T24' => 'lonja',
		'Lj3C273T2' => 'lonja',
		'Lj3C644G3' => 'lonja',
		'Lj3C644G4' => 'lonja',
		'Lj3P463T4' => 'lonja',
		'Lj3P545T31' => 'lonja',
		'Lj3P820T55' => 'lonja',
		'Lj4C260T12' => 'lonja',
		'Lj4C714G8' => 'lonja',
		'Lj4P131T14' => 'lonja',
		'Lj4P131T15' => 'lonja',
		'Lj5C102G24' => 'lonja',
		'Lj5P491T3' => 'lonja',
		'Lj5P564T12' => 'lonja',
		'Lj5P786T11' => 'lonja',
		'Lj6C97T3' => 'lonja',
		'Lj8P523T19' => 'lonja',
		'Lj9A24G30' => 'lonja',
		'Lj9A424G33' => 'lonja',
		'Lj9C219G10' => 'lonja',
		'Lj9P219T12' => 'lonja',
		'Lj9P705T22' => 'lonja',
		'Lju114C4T7' => 'lonja',
		'Lju1220C5G5' => 'lonja',
		'Lju2092C1G1' => 'lonja',
		'Lju2092C1T0' => 'lonja',
		'Lju225C6G6' => 'lonja',
		'Lju427C2T0' => 'lonja',
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		'Sopen11g019000' => 'spe',
		'Sopen11g019970' => 'spe',
		'Sopen11g020340' => 'spe',
		'Sopen11g020970' => 'spe',
		'Sopen12g008510' => 'spe',
		'Sopen12g008910' => 'spe',
		'Sopen12g009010' => 'spe',
		'Sopen12g009120' => 'spe',
		'Sopen12g009340' => 'spe',
		'Sopen12g009580' => 'spe',
		'Sopen12g010190' => 'spe',
		'Sopen12g010320' => 'spe',
		'Sopen12g010370' => 'spe',
		'Sopen12g012140' => 'spe',
		'Sopen12g012700' => 'spe',
		'Sopen12g013490' => 'spe',
		'Sopen12g014290' => 'spe',
		'Sopen12g015060' => 'spe',
		'Sopen12g015610' => 'spe',
		'Sopen12g018380' => 'spe',
		'Sopen12g019150' => 'spe',
		'Sopen12g020560' => 'spe',
		'Sopen12g023320' => 'spe',
		'Sp3g24190' => 'spa',
		'Sp4g07270' => 'spa',
		'Sp4g07530' => 'spa',
		'Sp4g07670' => 'spa',
		'Sp6g09360' => 'spa',
		'Sp7g04180' => 'spa',
		'Sp7g04980' => 'spa',
		'Sp7g08200' => 'spa',
		'Sp7g09660' => 'spa',
		'SpUn0081_0010' => 'spa',
		'THA.LOC104803417' => 'tha',
		'THA.LOC104817059' => 'tha',
		'Thecc.01G188700' => 'tca',
		'Thecc.05G106700' => 'tca',
		'Thecc.06G068800' => 'tca',
		'Thecc.07G189100' => 'tca',
		'Thecc.09G172800' => 'tca',
		'Thhalv10023044m.g' => 'esa',
		'Thhalv10023881m.g' => 'esa',
		'Thhalv10024067m.g' => 'esa'
	),
	'gf_id' => 'HOM05D000691',
	'gf_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'gf_types_configuration' => array(
		'HOMFAM' => array(
			'order' => '1',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		),
		'ORTHOFAM' => array(
			'order' => '2',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		)
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'allow_async_use' => true,
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D000691'
	),
	'data_identifier' => 'HOM05D000691',
	'data_type' => 'gf_id'
)
$sidebar_info = array(
	'gf_id' => 'HOM05D000691',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '827',
	'num_species' => '39'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$gf_genes = array(
	'Ah.01g012340' => 'amhyb',
	'Ah.01g013530' => 'amhyb',
	'Ah.03g143080' => 'amhyb',
	'Ah.06g186750' => 'amhyb',
	'Ah.06g186800' => 'amhyb',
	'Ah.07g200050' => 'amhyb',
	'Ah.08g209110' => 'amhyb',
	'Ah.09g229600' => 'amhyb',
	'Ah.09g229610' => 'amhyb',
	'Ah.10g026490' => 'amhyb',
	'Ah.12g065350' => 'amhyb',
	'Ah.13g069310' => 'amhyb',
	'Ah.14g080130' => 'amhyb',
	'Ah.14g081130' => 'amhyb',
	'Ah.14g081140' => 'amhyb',
	'Ah.16g109160' => 'amhyb',
	'Ah.16g109170' => 'amhyb',
	'Ah.16g109370' => 'amhyb',
	'AL3G47720' => 'aly',
	'ATR0012G060' => 'atr',
	'ATR0026G029' => 'atr',
	'ATR0193G043' => 'atr',
	'ATR0561G076' => 'atr',
	'ATR0561G181' => 'atr',
	'ATR0568G014' => 'atr',
	'ATR0568G114' => 'atr',
	'ATR0620G039' => 'atr',
	'ATR0629G125' => 'atr',
	'ATR0661G583' => 'atr',
	'ATR0686G019' => 'atr',
	'ATR0693G232' => 'atr',
	'ATR0697G104' => 'atr',
	'ATR0789G146' => 'atr',
	'ATR0794G066' => 'atr',
	'ATR1127G127' => 'atr',
	'ATR1131G040' => 'atr',
	'ATR1134G004' => 'atr',
	'ATR1134G095' => 'atr',
	'ATR1152G110' => 'atr',
	'ATR1153G065' => 'atr',
	'Atru.chr3.2296' => 'acertr',
	'AUR62000692' => 'cqu',
	'AUR62001473' => 'cqu',
	'AUR62001812' => 'cqu',
	'AUR62002706' => 'cqu',
	'AUR62003904' => 'cqu',
	'AUR62003905' => 'cqu',
	'AUR62004840' => 'cqu',
	'AUR62005160' => 'cqu',
	'AUR62005604' => 'cqu',
	'AUR62005891' => 'cqu',
	'AUR62007290' => 'cqu',
	'AUR62007502' => 'cqu',
	'AUR62007923' => 'cqu',
	'AUR62009972' => 'cqu',
	'AUR62010488' => 'cqu',
	'AUR62010643' => 'cqu',
	'AUR62012637' => 'cqu',
	'AUR62013492' => 'cqu',
	'AUR62014239' => 'cqu',
	'AUR62014878' => 'cqu',
	'AUR62015857' => 'cqu',
	'AUR62016224' => 'cqu',
	'AUR62017430' => 'cqu',
	'AUR62017467' => 'cqu',
	'AUR62018234' => 'cqu',
	'AUR62019060' => 'cqu',
	'AUR62019607' => 'cqu',
	'AUR62019661' => 'cqu',
	'AUR62022775' => 'cqu',
	'AUR62023603' => 'cqu',
	'AUR62024563' => 'cqu',
	'AUR62026199' => 'cqu',
	'AUR62026905' => 'cqu',
	'AUR62028639' => 'cqu',
	'AUR62029168' => 'cqu',
	'AUR62029551' => 'cqu',
	'AUR62029860' => 'cqu',
	'AUR62030164' => 'cqu',
	'AUR62031208' => 'cqu',
	'AUR62031287' => 'cqu',
	'AUR62031817' => 'cqu',
	'AUR62032126' => 'cqu',
	'AUR62032358' => 'cqu',
	'AUR62032884' => 'cqu',
	'AUR62032892' => 'cqu',
	'AUR62033082' => 'cqu',
	'AUR62033100' => 'cqu',
	'AUR62033255' => 'cqu',
	'AUR62033698' => 'cqu',
	'AUR62033757' => 'cqu',
	'AUR62034760' => 'cqu',
	'AUR62034860' => 'cqu',
	'AUR62035179' => 'cqu',
	'AUR62035881' => 'cqu',
	'AUR62036824' => 'cqu',
	'AUR62036876' => 'cqu',
	'AUR62037319' => 'cqu',
	'AUR62037362' => 'cqu',
	'AUR62037541' => 'cqu',
	'AUR62037853' => 'cqu',
	'AUR62038299' => 'cqu',
	'AUR62038563' => 'cqu',
	'AUR62038564' => 'cqu',
	'AUR62038594' => 'cqu',
	'AUR62038792' => 'cqu',
	'AUR62038947' => 'cqu',
	'AUR62039030' => 'cqu',
	'AUR62039231' => 'cqu',
	'AUR62039452' => 'cqu',
	'AUR62040334' => 'cqu',
	'AUR62040869' => 'cqu',
	'AUR62040870' => 'cqu',
	'AUR62040916' => 'cqu',
	'AUR62041199' => 'cqu',
	'AUR62041334' => 'cqu',
	'AUR62041608' => 'cqu',
	'AUR62041609' => 'cqu',
	'AUR62041833' => 'cqu',
	'AUR62041834' => 'cqu',
	'AUR62042054' => 'cqu',
	'AUR62042134' => 'cqu',
	'AUR62042236' => 'cqu',
	'AUR62042281' => 'cqu',
	'AUR62042593' => 'cqu',
	'AUR62042653' => 'cqu',
	'AUR62043025' => 'cqu',
	'AUR62043026' => 'cqu',
	'AUR62043063' => 'cqu',
	'AUR62043091' => 'cqu',
	'AUR62043320' => 'cqu',
	'BolC5t32558H' => 'bol',
	'CAN.G1036.12' => 'can',
	'CAN.G1432.23' => 'can',
	'CAN.G159.19' => 'can',
	'CAN.G4114.1' => 'can',
	'CAN.G492.85' => 'can',
	'CAN.G500.95' => 'can',
	'CAN.G93.31' => 'can',
	'CiPaw.04G054900' => 'cil',
	'CiPaw.05G045400' => 'cil',
	'CiPaw.15G094100' => 'cil',
	'ClCG00G000700' => 'cla',
	'ClCG00G000780' => 'cla',
	'ClCG01G012280' => 'cla',
	'ClCG02G006140' => 'cla',
	'ClCG02G009810' => 'cla',
	'ClCG03G010170' => 'cla',
	'ClCG03G010260' => 'cla',
	'ClCG04G000770' => 'cla',
	'ClCG05G013980' => 'cla',
	'ClCG06G009110' => 'cla',
	'ClCG06G009120' => 'cla',
	'ClCG08G002190' => 'cla',
	'ClCG09G013830' => 'cla',
	'ClCG10G006760' => 'cla',
	'ClCG11G007310' => 'cla',
	'COL.COLO4_16141' => 'col',
	'Cpa.g.sc202.2' => 'cpa',
	'Cpa.g.sc76.18' => 'cpa',
	'CsaV3_1G031080' => 'csa',
	'CsaV3_4G011870' => 'csa',
	'CsaV3_4G014860' => 'csa',
	'CsaV3_4G021860' => 'csa',
	'CsaV3_6G009880' => 'csa',
	'CsaV3_7G021240' => 'csa',
	'CsaV3_UNG240600' => 'csa',
	'CSS0003516' => 'camsi',
	'CSS0013023' => 'camsi',
	'CSS0017680' => 'camsi',
	'CSS0018551' => 'camsi',
	'CSS0026792' => 'camsi',
	'CSS0028271' => 'camsi',
	'CSS0033603' => 'camsi',
	'CSS0040789' => 'camsi',
	'CSS0045068' => 'camsi',
	'CSS0045803' => 'camsi',
	'Dinv10528' => 'din',
	'Duzib116G0875' => 'dzi',
	'Duzib128G0055' => 'dzi',
	'EL10Ac1g02377' => 'bvu',
	'EL10Ac1g02378' => 'bvu',
	'EL10Ac2g03486' => 'bvu',
	'EL10Ac2g03487' => 'bvu',
	'EL10Ac3g05722' => 'bvu',
	'EL10Ac3g06186' => 'bvu',
	'EL10Ac5g11258' => 'bvu',
	'EL10Ac6g13831' => 'bvu',
	'EL10Ac6g14162' => 'bvu',
	'EL10Ac6g14316' => 'bvu',
	'EL10Ac6g14317' => 'bvu',
	'EL10Ac6g14588' => 'bvu',
	'EL10Ac7g16302' => 'bvu',
	'EL10Ac7g16543' => 'bvu',
	'EL10Ac8g18762' => 'bvu',
	'EL10Ac9g20847' => 'bvu',
	'EL10As7g23731' => 'bvu',
	'EL10As7g23732' => 'bvu',
	'FvH4_1g23713' => 'fve',
	'FvH4_2g00261' => 'fve',
	'FvH4_2g00262' => 'fve',
	'FvH4_2g15681' => 'fve',
	'FvH4_2g17851' => 'fve',
	'FvH4_3g10531' => 'fve',
	'FvH4_3g33536' => 'fve',
	'FvH4_4g03471' => 'fve',
	'FvH4_4g19351' => 'fve',
	'FvH4_4g34281' => 'fve',
	'FvH4_5g03811' => 'fve',
	'FvH4_5g03812' => 'fve',
	'FvH4_5g11822' => 'fve',
	'FvH4_5g31701' => 'fve',
	'FvH4_6g12161' => 'fve',
	'FvH4_6g15222' => 'fve',
	'FvH4_6g15223' => 'fve',
	'FvH4_6g19301' => 'fve',
	'FvH4_6g33011' => 'fve',
	'FvH4_6g50161' => 'fve',
	'FvH4_7g04123' => 'fve',
	'FvH4_c7g00010' => 'fve',
	'Gorai.012G165300' => 'gra',
	'HanXRQChr00c0452g0574871' => 'han',
	'HanXRQChr01g0029471' => 'han',
	'HanXRQChr05g0133501' => 'han',
	'HanXRQChr10g0280141' => 'han',
	'HanXRQChr10g0280631' => 'han',
	'HanXRQChr13g0409991' => 'han',
	'HanXRQChr15g0468361' => 'han',
	'Hma1.2p1_0021F.1_g014270' => 'hma',
	'Hma1.2p1_0026F.1_g016730' => 'hma',
	'Hma1.2p1_0177F.1_g077930' => 'hma',
	'Hma1.2p1_0370F.1_g137540' => 'hma',
	'Hma1.2p1_0637F.1_g193600' => 'hma',
	'Hma1.2p1_1045F.1_g251360' => 'hma',
	'Hma1.2p1_1168F.1_g263120' => 'hma',
	'Hma1.2p1_1640F.1_g295040' => 'hma',
	'Hma1.2p1_2467F.1_g322660' => 'hma',
	'Hund01785' => 'sun',
	'Hund04739' => 'sun',
	'Hund07717' => 'sun',
	'Hund08060' => 'sun',
	'Hund08734' => 'sun',
	'Hund10876' => 'sun',
	'Hund14991' => 'sun',
	'Hund15051' => 'sun',
	'Hund15082' => 'sun',
	'Hund17998' => 'sun',
	'Hund18526' => 'sun',
	'Hund19828' => 'sun',
	'Hund23384' => 'sun',
	'Hund26399' => 'sun',
	'Hund28766' => 'sun',
	'Hund28768' => 'sun',
	'Lj1A487G33' => 'lonja',
	'Lj1A487G34' => 'lonja',
	'Lj1A489G15' => 'lonja',
	'Lj1C1113T3' => 'lonja',
	'Lj1C3T4' => 'lonja',
	'Lj1C763G4' => 'lonja',
	'Lj1P195T27' => 'lonja',
	'Lj1P573T13' => 'lonja',
	'Lj1P895T45' => 'lonja',
	'Lj1P995G28' => 'lonja',
	'Lj2A1125G46' => 'lonja',
	'Lj2C116T7' => 'lonja',
	'Lj2P295T30' => 'lonja',
	'Lj2P476T23' => 'lonja',
	'Lj2P603T27' => 'lonja',
	'Lj2P609T17' => 'lonja',
	'Lj2P727T24' => 'lonja',
	'Lj3C273T2' => 'lonja',
	'Lj3C644G3' => 'lonja',
	'Lj3C644G4' => 'lonja',
	'Lj3P463T4' => 'lonja',
	'Lj3P545T31' => 'lonja',
	'Lj3P820T55' => 'lonja',
	'Lj4C260T12' => 'lonja',
	'Lj4C714G8' => 'lonja',
	'Lj4P131T14' => 'lonja',
	'Lj4P131T15' => 'lonja',
	'Lj5C102G24' => 'lonja',
	'Lj5P491T3' => 'lonja',
	'Lj5P564T12' => 'lonja',
	'Lj5P786T11' => 'lonja',
	'Lj6C97T3' => 'lonja',
	'Lj8P523T19' => 'lonja',
	'Lj9A24G30' => 'lonja',
	'Lj9A424G33' => 'lonja',
	'Lj9C219G10' => 'lonja',
	'Lj9P219T12' => 'lonja',
	'Lj9P705T22' => 'lonja',
	'Lju114C4T7' => 'lonja',
	'Lju1220C5G5' => 'lonja',
	'Lju2092C1G1' => 'lonja',
	'Lju2092C1T0' => 'lonja',
	'Lju225C6G6' => 'lonja',
	'Lju427C2T0' => 'lonja',
	'Lju50C9T4' => 'lonja',
	'Lju926C12T2' => 'lonja',
	'Manes.06G126602' => 'mes',
	'Manes.13G002614' => 'mes',
	'Manes.15G192966' => 'mes',
	'Manes.17G001483' => 'mes',
	'Manes.17G022547' => 'mes',
	'Manes.18G042825' => 'mes',
	'Manes.S026816' => 'mes',
	'Manes.S027416' => 'mes',
	'MBI02_g15234_MAGBIO' => 'mbi',
	'MBI16_g35584_MAGBIO' => 'mbi',
	'MELO3C008948.2' => 'cme',
	'MELO3C010395.2' => 'cme',
	'MELO3C010396.2' => 'cme',
	'MELO3C015759.2' => 'cme',
	'MELO3C022607.2' => 'cme',
	'MELO3C028897.2' => 'cme',
	'Oeu000188.1' => 'oeu',
	'Oeu002226.1' => 'oeu',
	'Oeu003087.1' => 'oeu',
	'Oeu003392.1' => 'oeu',
	'Oeu003523.1' => 'oeu',
	'Oeu003524.1' => 'oeu',
	'Oeu003528.1' => 'oeu',
	'Oeu003547.2' => 'oeu',
	'Oeu004677.1' => 'oeu',
	'Oeu005362.1' => 'oeu',
	'Oeu005833.1' => 'oeu',
	'Oeu005834.1' => 'oeu',
	'Oeu006751.1' => 'oeu',
	'Oeu007084.1' => 'oeu',
	'Oeu007264.1' => 'oeu',
	'Oeu008153.1' => 'oeu',
	'Oeu008228.1' => 'oeu',
	'Oeu008229.1' => 'oeu',
	'Oeu009580.1' => 'oeu',
	'Oeu010110.1' => 'oeu',
	'Oeu011704.1' => 'oeu',
	'Oeu011912.1' => 'oeu',
	'Oeu012057.1' => 'oeu',
	'Oeu012157.1' => 'oeu',
	'Oeu013775.1' => 'oeu',
	'Oeu013806.1' => 'oeu',
	'Oeu016457.1' => 'oeu',
	'Oeu016803.1' => 'oeu',
	'Oeu017243.2' => 'oeu',
	'Oeu017935.1' => 'oeu',
	'Oeu020246.2' => 'oeu',
	'Oeu020990.1' => 'oeu',
	'Oeu021941.1' => 'oeu',
	'Oeu021986.1' => 'oeu',
	'Oeu023578.1' => 'oeu',
	'Oeu024242.1' => 'oeu',
	'Oeu025087.1' => 'oeu',
	'Oeu025093.1' => 'oeu',
	'Oeu025412.1' => 'oeu',
	'Oeu025520.1' => 'oeu',
	'Oeu026473.1' => 'oeu',
	'Oeu027505.1' => 'oeu',
	'Oeu027530.1' => 'oeu',
	'Oeu027794.2' => 'oeu',
	'Oeu028951.1' => 'oeu',
	'Oeu029141.1' => 'oeu',
	'Oeu029231.4' => 'oeu',
	'Oeu029388.1' => 'oeu',
	'Oeu029673.1' => 'oeu',
	'Oeu029674.1' => 'oeu',
	'Oeu029748.1' => 'oeu',
	'Oeu030224.1' => 'oeu',
	'Oeu030243.1' => 'oeu',
	'Oeu030253.1' => 'oeu',
	'Oeu030414.1' => 'oeu',
	'Oeu030415.1' => 'oeu',
	'Oeu030472.1' => 'oeu',
	'Oeu031432.1' => 'oeu',
	'Oeu031697.1' => 'oeu',
	'Oeu032030.1' => 'oeu',
	'Oeu032031.1' => 'oeu',
	'Oeu032075.1' => 'oeu',
	'Oeu032737.1' => 'oeu',
	'Oeu033407.1' => 'oeu',
	'Oeu033485.1' => 'oeu',
	'Oeu034465.1' => 'oeu',
	'Oeu034951.1' => 'oeu',
	'Oeu036281.1' => 'oeu',
	'Oeu036931.1' => 'oeu',
	'Oeu036932.1' => 'oeu',
	'Oeu037340.1' => 'oeu',
	'Oeu037611.1' => 'oeu',
	'Oeu039205.1' => 'oeu',
	'Oeu039325.1' => 'oeu',
	'Oeu040999.1' => 'oeu',
	'Oeu041244.1' => 'oeu',
	'Oeu041682.1' => 'oeu',
	'Oeu041863.1' => 'oeu',
	'Oeu042345.1' => 'oeu',
	'Oeu042346.1' => 'oeu',
	'Oeu042671.1' => 'oeu',
	'Oeu043273.1' => 'oeu',
	'Oeu043573.1' => 'oeu',
	'Oeu044071.1' => 'oeu',
	'Oeu046813.1' => 'oeu',
	'Oeu048160.1' => 'oeu',
	'Oeu048162.1' => 'oeu',
	'Oeu048282.1' => 'oeu',
	'Oeu048297.1' => 'oeu',
	'Oeu048360.1' => 'oeu',
	'Oeu048565.1' => 'oeu',
	'Oeu049268.1' => 'oeu',
	'Oeu049465.1' => 'oeu',
	'Oeu049978.1' => 'oeu',
	'Oeu050628.1' => 'oeu',
	'Oeu050727.1' => 'oeu',
	'Oeu052065.1' => 'oeu',
	'Oeu052582.1' => 'oeu',
	'Oeu053090.1' => 'oeu',
	'Oeu053644.1' => 'oeu',
	'Oeu053713.1' => 'oeu',
	'Oeu055027.1' => 'oeu',
	'Oeu057741.1' => 'oeu',
	'Oeu058973.1' => 'oeu',
	'Oeu060366.1' => 'oeu',
	'Oeu061428.1' => 'oeu',
	'Oeu062087.1' => 'oeu',
	'Oeu062537.1' => 'oeu',
	'Oeu062538.1' => 'oeu',
	'Oeu064387.1' => 'oeu',
	'PGSC0003DMG400002344' => 'stu',
	'PGSC0003DMG400004046' => 'stu',
	'PGSC0003DMG400006418' => 'stu',
	'PGSC0003DMG400008410' => 'stu',
	'PGSC0003DMG400008620' => 'stu',
	'PGSC0003DMG400009504' => 'stu',
	'PGSC0003DMG400009845' => 'stu',
	'PGSC0003DMG400011177' => 'stu',
	'PGSC0003DMG400011629' => 'stu',
	'PGSC0003DMG400013586' => 'stu',
	'PGSC0003DMG400013599' => 'stu',
	'PGSC0003DMG400014534' => 'stu',
	'PGSC0003DMG400016055' => 'stu',
	'PGSC0003DMG400016736' => 'stu',
	'PGSC0003DMG400016866' => 'stu',
	'PGSC0003DMG400017701' => 'stu',
	'PGSC0003DMG400018448' => 'stu',
	'PGSC0003DMG400020751' => 'stu',
	'PGSC0003DMG400021088' => 'stu',
	'PGSC0003DMG400021387' => 'stu',
	'PGSC0003DMG400021640' => 'stu',
	'PGSC0003DMG400021704' => 'stu',
	'PGSC0003DMG400022155' => 'stu',
	'PGSC0003DMG400023544' => 'stu',
	'PGSC0003DMG400023564' => 'stu',
	'PGSC0003DMG400028558' => 'stu',
	'PGSC0003DMG400028618' => 'stu',
	'PGSC0003DMG400029149' => 'stu',
	'PGSC0003DMG400029979' => 'stu',
	'PGSC0003DMG400030069' => 'stu',
	'PGSC0003DMG400031272' => 'stu',
	'PGSC0003DMG400034656' => 'stu',
	'PGSC0003DMG400035151' => 'stu',
	'PGSC0003DMG400035741' => 'stu',
	'PGSC0003DMG400036100' => 'stu',
	'PGSC0003DMG400037683' => 'stu',
	'PGSC0003DMG400038046' => 'stu',
	'PGSC0003DMG400040121' => 'stu',
	'PGSC0003DMG400042113' => 'stu',
	'PGSC0003DMG400042218' => 'stu',
	'PGSC0003DMG400044188' => 'stu',
	'PGSC0003DMG400044323' => 'stu',
	'PGSC0003DMG400045014' => 'stu',
	'PGSC0003DMG400045177' => 'stu',
	'PGSC0003DMG400047199' => 'stu',
	'Potri.017G071366' => 'ptr',
	'RcHm_v2.0_Chr2g0137481' => 'rch',
	'Sc20g0003180' => 'sci',
	'SEGI_00305' => 'sgi',
	'SEGI_02246' => 'sgi',
	'SEGI_03696' => 'sgi',
	'SEGI_05490' => 'sgi',
	'SEGI_05682' => 'sgi',
	'SEGI_05900' => 'sgi',
	'SEGI_06517' => 'sgi',
	'SEGI_12587' => 'sgi',
	'SEGI_13129' => 'sgi',
	'SEGI_16935' => 'sgi',
	'SEGI_18008' => 'sgi',
	'SEGI_18224' => 'sgi',
	'SEGI_20188' => 'sgi',
	'SEGI_20772' => 'sgi',
	'SEGI_20842' => 'sgi',
	'SEGI_22270' => 'sgi',
	'SEGI_22705' => 'sgi',
	'SEGI_23638' => 'sgi',
	'SEGI_23928' => 'sgi',
	'SEGI_24790' => 'sgi',
	'SEGI_28421' => 'sgi',
	'SEGI_28832' => 'sgi',
	'SEGI_29884' => 'sgi',
	'SEGI_30829' => 'sgi',
	'SEGI_35046' => 'sgi',
	'SEGI_35582' => 'sgi',
	'SEGI_37882' => 'sgi',
	'SEGI_39680' => 'sgi',
	'SEGI_40069' => 'sgi',
	'SEGI_40087' => 'sgi',
	'SEGI_41606' => 'sgi',
	'SGA_v2.0_scaffold50G18578' => 'sas',
	'SHI00293' => 'shi',
	'SHI00389' => 'shi',
	'SHI00445' => 'shi',
	'SHI01000' => 'shi',
	'SHI01503' => 'shi',
	'SHI01718' => 'shi',
	'SHI03454' => 'shi',
	'SHI03493' => 'shi',
	'SHI03494' => 'shi',
	'SHI03628' => 'shi',
	'SHI04457' => 'shi',
	'SHI04691' => 'shi',
	'SHI04829' => 'shi',
	'SHI05225' => 'shi',
	'SHI06326' => 'shi',
	'SHI06505' => 'shi',
	'SHI06770' => 'shi',
	'SHI07388' => 'shi',
	'SHI07582' => 'shi',
	'SHI07583' => 'shi',
	'SHI08271' => 'shi',
	'SHI10619' => 'shi',
	'SHI10892' => 'shi',
	'SHI10910' => 'shi',
	'SHI10911' => 'shi',
	'SHI14326' => 'shi',
	'SHI14681' => 'shi',
	'SHI15017' => 'shi',
	'SHI15096' => 'shi',
	'SHI15120' => 'shi',
	'SHI15274' => 'shi',
	'SHI16232' => 'shi',
	'SHI16811' => 'shi',
	'SHI17386' => 'shi',
	'SHI17926' => 'shi',
	'SHI18293' => 'shi',
	'SHI20489' => 'shi',
	'SHI20658' => 'shi',
	'SHI20663' => 'shi',
	'SHI21566' => 'shi',
	'SHI22547' => 'shi',
	'SHI22708' => 'shi',
	'SHI22709' => 'shi',
	'SHI22878' => 'shi',
	'SHI22879' => 'shi',
	'SHI23024' => 'shi',
	'SHI25053' => 'shi',
	'SHI25076' => 'shi',
	'SHI25116' => 'shi',
	'SHI25381' => 'shi',
	'SHI25535' => 'shi',
	'SHI25740' => 'shi',
	'SHI25991' => 'shi',
	'SHI26344' => 'shi',
	'SHI26345' => 'shi',
	'SHI27097' => 'shi',
	'SHI27140' => 'shi',
	'SHI27178' => 'shi',
	'SHI27207' => 'shi',
	'SHI27225' => 'shi',
	'SHI27734' => 'shi',
	'SHI27806' => 'shi',
	'SHI28576' => 'shi',
	'SHI29081' => 'shi',
	'SHI30038' => 'shi',
	'SHI30394' => 'shi',
	'SHI30652' => 'shi',
	'SHI32154' => 'shi',
	'SHI32205' => 'shi',
	'SHI32365' => 'shi',
	'SHI32439' => 'shi',
	'SHI32505' => 'shi',
	'SHI32626' => 'shi',
	'SHI32714' => 'shi',
	'SHI32715' => 'shi',
	'SHI32716' => 'shi',
	'SHI33118' => 'shi',
	'SHI33318' => 'shi',
	'SHI33373' => 'shi',
	'SHI33512' => 'shi',
	'SHI33625' => 'shi',
	'SHI34327' => 'shi',
	'SHI35604' => 'shi',
	'SHI36119' => 'shi',
	'SHI36120' => 'shi',
	'SHI44959' => 'shi',
	'SHI46406' => 'shi',
	'SHI48191' => 'shi',
	'SHI48192' => 'shi',
	'Solyc10g150111.1' => 'sly',
	'Solyc12g062340.2' => 'sly',
	'Sopen00g001750' => 'spe',
	'Sopen00g001820' => 'spe',
	'Sopen00g001830' => 'spe',
	'Sopen00g001890' => 'spe',
	'Sopen00g002240' => 'spe',
	'Sopen00g003950' => 'spe',
	'Sopen00g004130' => 'spe',
	'Sopen00g004810' => 'spe',
	'Sopen00g005120' => 'spe',
	'Sopen00g005190' => 'spe',
	'Sopen00g007000' => 'spe',
	'Sopen00g007210' => 'spe',
	'Sopen00g012840' => 'spe',
	'Sopen00g013060' => 'spe',
	'Sopen00g013610' => 'spe',
	'Sopen00g013630' => 'spe',
	'Sopen01g004610' => 'spe',
	'Sopen01g007660' => 'spe',
	'Sopen01g007750' => 'spe',
	'Sopen01g007760' => 'spe',
	'Sopen01g007770' => 'spe',
	'Sopen01g007860' => 'spe',
	'Sopen01g009130' => 'spe',
	'Sopen01g009820' => 'spe',
	'Sopen01g011240' => 'spe',
	'Sopen01g012740' => 'spe',
	'Sopen01g013840' => 'spe',
	'Sopen01g013850' => 'spe',
	'Sopen01g016140' => 'spe',
	'Sopen01g016150' => 'spe',
	'Sopen01g016830' => 'spe',
	'Sopen01g017260' => 'spe',
	'Sopen01g019000' => 'spe',
	'Sopen01g019690' => 'spe',
	'Sopen01g022160' => 'spe',
	'Sopen01g024000' => 'spe',
	'Sopen01g024670' => 'spe',
	'Sopen01g024770' => 'spe',
	'Sopen01g024900' => 'spe',
	'Sopen01g025130' => 'spe',
	'Sopen01g026370' => 'spe',
	'Sopen01g041640' => 'spe',
	'Sopen01g046930' => 'spe',
	'Sopen02g001360' => 'spe',
	'Sopen02g002010' => 'spe',
	'Sopen02g003600' => 'spe',
	'Sopen02g003730' => 'spe',
	'Sopen02g005430' => 'spe',
	'Sopen02g005510' => 'spe',
	'Sopen02g006840' => 'spe',
	'Sopen02g007390' => 'spe',
	'Sopen02g007420' => 'spe',
	'Sopen02g007540' => 'spe',
	'Sopen02g007920' => 'spe',
	'Sopen02g008960' => 'spe',
	'Sopen02g009450' => 'spe',
	'Sopen02g009460' => 'spe',
	'Sopen02g011320' => 'spe',
	'Sopen02g012680' => 'spe',
	'Sopen02g018090' => 'spe',
	'Sopen02g022140' => 'spe',
	'Sopen03g010330' => 'spe',
	'Sopen03g013130' => 'spe',
	'Sopen03g013180' => 'spe',
	'Sopen03g013230' => 'spe',
	'Sopen03g014110' => 'spe',
	'Sopen03g015260' => 'spe',
	'Sopen03g015790' => 'spe',
	'Sopen03g018360' => 'spe',
	'Sopen03g024470' => 'spe',
	'Sopen03g026800' => 'spe',
	'Sopen04g003180' => 'spe',
	'Sopen04g008260' => 'spe',
	'Sopen04g010320' => 'spe',
	'Sopen04g011020' => 'spe',
	'Sopen04g011200' => 'spe',
	'Sopen04g011280' => 'spe',
	'Sopen04g021910' => 'spe',
	'Sopen04g023870' => 'spe',
	'Sopen05g009880' => 'spe',
	'Sopen05g011580' => 'spe',
	'Sopen05g012230' => 'spe',
	'Sopen05g012500' => 'spe',
	'Sopen05g012560' => 'spe',
	'Sopen05g012570' => 'spe',
	'Sopen05g012760' => 'spe',
	'Sopen05g013710' => 'spe',
	'Sopen05g015050' => 'spe',
	'Sopen05g026090' => 'spe',
	'Sopen05g028020' => 'spe',
	'Sopen05g028610' => 'spe',
	'Sopen05g029300' => 'spe',
	'Sopen06g005520' => 'spe',
	'Sopen06g006750' => 'spe',
	'Sopen06g008160' => 'spe',
	'Sopen06g009120' => 'spe',
	'Sopen06g013550' => 'spe',
	'Sopen06g015340' => 'spe',
	'Sopen06g018330' => 'spe',
	'Sopen06g021630' => 'spe',
	'Sopen06g021650' => 'spe',
	'Sopen07g006730' => 'spe',
	'Sopen07g008690' => 'spe',
	'Sopen07g008700' => 'spe',
	'Sopen07g008720' => 'spe',
	'Sopen07g008870' => 'spe',
	'Sopen07g009400' => 'spe',
	'Sopen07g009410' => 'spe',
	'Sopen07g009470' => 'spe',
	'Sopen07g009540' => 'spe',
	'Sopen07g011060' => 'spe',
	'Sopen07g011110' => 'spe',
	'Sopen07g011820' => 'spe',
	'Sopen07g013260' => 'spe',
	'Sopen07g014740' => 'spe',
	'Sopen07g015160' => 'spe',
	'Sopen07g015230' => 'spe',
	'Sopen07g016240' => 'spe',
	'Sopen07g017200' => 'spe',
	'Sopen07g017810' => 'spe',
	'Sopen07g019030' => 'spe',
	'Sopen07g020430' => 'spe',
	'Sopen07g021010' => 'spe',
	'Sopen07g021340' => 'spe',
	'Sopen07g022950' => 'spe',
	'Sopen07g027860' => 'spe',
	'Sopen08g007820' => 'spe',
	'Sopen08g009330' => 'spe',
	'Sopen08g012310' => 'spe',
	'Sopen08g012560' => 'spe',
	'Sopen08g014040' => 'spe',
	'Sopen08g014650' => 'spe',
	'Sopen08g017020' => 'spe',
	'Sopen08g018300' => 'spe',
	'Sopen08g020530' => 'spe',
	'Sopen09g008590' => 'spe',
	'Sopen09g008780' => 'spe',
	'Sopen09g011540' => 'spe',
	'Sopen09g011920' => 'spe',
	'Sopen09g014170' => 'spe',
	'Sopen09g016520' => 'spe',
	'Sopen09g021030' => 'spe',
	'Sopen09g023110' => 'spe',
	'Sopen09g024750' => 'spe',
	'Sopen09g025230' => 'spe',
	'Sopen09g025600' => 'spe',
	'Sopen09g034660' => 'spe',
	'Sopen10g006700' => 'spe',
	'Sopen10g009130' => 'spe',
	'Sopen10g009140' => 'spe',
	'Sopen10g009560' => 'spe',
	'Sopen10g010340' => 'spe',
	'Sopen10g011040' => 'spe',
	'Sopen10g013650' => 'spe',
	'Sopen10g014130' => 'spe',
	'Sopen10g014140' => 'spe',
	'Sopen10g014760' => 'spe',
	'Sopen10g015080' => 'spe',
	'Sopen10g015830' => 'spe',
	'Sopen10g018240' => 'spe',
	'Sopen10g018300' => 'spe',
	'Sopen10g018350' => 'spe',
	'Sopen10g018460' => 'spe',
	'Sopen10g018670' => 'spe',
	'Sopen10g019040' => 'spe',
	'Sopen10g019330' => 'spe',
	'Sopen10g019340' => 'spe',
	'Sopen10g019360' => 'spe',
	'Sopen10g019370' => 'spe',
	'Sopen10g020620' => 'spe',
	'Sopen10g021550' => 'spe',
	'Sopen10g022160' => 'spe',
	'Sopen10g023540' => 'spe',
	'Sopen10g023570' => 'spe',
	'Sopen10g023580' => 'spe',
	'Sopen10g023600' => 'spe',
	'Sopen10g023620' => 'spe',
	'Sopen10g023650' => 'spe',
	'Sopen10g024800' => 'spe',
	'Sopen10g026170' => 'spe',
	'Sopen11g007790' => 'spe',
	'Sopen11g010170' => 'spe',
	'Sopen11g010580' => 'spe',
	'Sopen11g013420' => 'spe',
	'Sopen11g016330' => 'spe',
	'Sopen11g017010' => 'spe',
	'Sopen11g018110' => 'spe',
	'Sopen11g018960' => 'spe',
	'Sopen11g019000' => 'spe',
	'Sopen11g019970' => 'spe',
	'Sopen11g020340' => 'spe',
	'Sopen11g020970' => 'spe',
	'Sopen12g008510' => 'spe',
	'Sopen12g008910' => 'spe',
	'Sopen12g009010' => 'spe',
	'Sopen12g009120' => 'spe',
	'Sopen12g009340' => 'spe',
	'Sopen12g009580' => 'spe',
	'Sopen12g010190' => 'spe',
	'Sopen12g010320' => 'spe',
	'Sopen12g010370' => 'spe',
	'Sopen12g012140' => 'spe',
	'Sopen12g012700' => 'spe',
	'Sopen12g013490' => 'spe',
	'Sopen12g014290' => 'spe',
	'Sopen12g015060' => 'spe',
	'Sopen12g015610' => 'spe',
	'Sopen12g018380' => 'spe',
	'Sopen12g019150' => 'spe',
	'Sopen12g020560' => 'spe',
	'Sopen12g023320' => 'spe',
	'Sp3g24190' => 'spa',
	'Sp4g07270' => 'spa',
	'Sp4g07530' => 'spa',
	'Sp4g07670' => 'spa',
	'Sp6g09360' => 'spa',
	'Sp7g04180' => 'spa',
	'Sp7g04980' => 'spa',
	'Sp7g08200' => 'spa',
	'Sp7g09660' => 'spa',
	'SpUn0081_0010' => 'spa',
	'THA.LOC104803417' => 'tha',
	'THA.LOC104817059' => 'tha',
	'Thecc.01G188700' => 'tca',
	'Thecc.05G106700' => 'tca',
	'Thecc.06G068800' => 'tca',
	'Thecc.07G189100' => 'tca',
	'Thecc.09G172800' => 'tca',
	'Thhalv10023044m.g' => 'esa',
	'Thhalv10023881m.g' => 'esa',
	'Thhalv10024067m.g' => 'esa'
)
$gf_id = 'HOM05D000691'
$gf_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$gf_types_configuration = array(
	'HOMFAM' => array(
		'order' => '1',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	),
	'ORTHOFAM' => array(
		'order' => '2',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	)
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$allow_async_use = true
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D000691'
)
$data_identifier = 'HOM05D000691'
$data_type = 'gf_id'
$species_gene_counts = array(
	'amhyb' => (int) 18,
	'aly' => (int) 1,
	'atr' => (int) 21,
	'acertr' => (int) 1,
	'cqu' => (int) 90,
	'bol' => (int) 1,
	'can' => (int) 7,
	'cil' => (int) 3,
	'cla' => (int) 15,
	'col' => (int) 1,
	'cpa' => (int) 2,
	'csa' => (int) 7,
	'camsi' => (int) 10,
	'din' => (int) 1,
	'dzi' => (int) 2,
	'bvu' => (int) 18,
	'fve' => (int) 22,
	'gra' => (int) 1,
	'han' => (int) 7,
	'hma' => (int) 9,
	'sun' => (int) 16,
	'lonja' => (int) 46,
	'mes' => (int) 8,
	'mbi' => (int) 2,
	'cme' => (int) 6,
	'oeu' => (int) 110,
	'stu' => (int) 45,
	'ptr' => (int) 1,
	'rch' => (int) 1,
	'sci' => (int) 1,
	'sgi' => (int) 31,
	'sas' => (int) 1,
	'shi' => (int) 89,
	'sly' => (int) 2,
	'spe' => (int) 211,
	'spa' => (int) 10,
	'tha' => (int) 2,
	'tca' => (int) 5,
	'esa' => (int) 3
)
$gf_gene_species = 'esa'
$gf_gene_id = 'Thhalv10024067m.g'
$species_info = array(
	'species' => 'sci',
	'common_name' => 'Simmondsia chinensis',
	'tax_id' => '3999',
	'version' => 'sc1'
)
$local_species = 'sci'
$disabled = ''
$selected = ''
$num_hits = (int) 1
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Analysis/custom_tree_creation.ctp, line 27
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933

Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]
Code Context
        $disabled    = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";

        $selected    = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";

        $num_hits    = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D000691',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '827',
		'num_species' => '39'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'gf_genes' => array(
		'Ah.01g012340' => 'amhyb',
		'Ah.01g013530' => 'amhyb',
		'Ah.03g143080' => 'amhyb',
		'Ah.06g186750' => 'amhyb',
		'Ah.06g186800' => 'amhyb',
		'Ah.07g200050' => 'amhyb',
		'Ah.08g209110' => 'amhyb',
		'Ah.09g229600' => 'amhyb',
		'Ah.09g229610' => 'amhyb',
		'Ah.10g026490' => 'amhyb',
		'Ah.12g065350' => 'amhyb',
		'Ah.13g069310' => 'amhyb',
		'Ah.14g080130' => 'amhyb',
		'Ah.14g081130' => 'amhyb',
		'Ah.14g081140' => 'amhyb',
		'Ah.16g109160' => 'amhyb',
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		'SEGI_03696' => 'sgi',
		'SEGI_05490' => 'sgi',
		'SEGI_05682' => 'sgi',
		'SEGI_05900' => 'sgi',
		'SEGI_06517' => 'sgi',
		'SEGI_12587' => 'sgi',
		'SEGI_13129' => 'sgi',
		'SEGI_16935' => 'sgi',
		'SEGI_18008' => 'sgi',
		'SEGI_18224' => 'sgi',
		'SEGI_20188' => 'sgi',
		'SEGI_20772' => 'sgi',
		'SEGI_20842' => 'sgi',
		'SEGI_22270' => 'sgi',
		'SEGI_22705' => 'sgi',
		'SEGI_23638' => 'sgi',
		'SEGI_23928' => 'sgi',
		'SEGI_24790' => 'sgi',
		'SEGI_28421' => 'sgi',
		'SEGI_28832' => 'sgi',
		'SEGI_29884' => 'sgi',
		'SEGI_30829' => 'sgi',
		'SEGI_35046' => 'sgi',
		'SEGI_35582' => 'sgi',
		'SEGI_37882' => 'sgi',
		'SEGI_39680' => 'sgi',
		'SEGI_40069' => 'sgi',
		'SEGI_40087' => 'sgi',
		'SEGI_41606' => 'sgi',
		'SGA_v2.0_scaffold50G18578' => 'sas',
		'SHI00293' => 'shi',
		'SHI00389' => 'shi',
		'SHI00445' => 'shi',
		'SHI01000' => 'shi',
		'SHI01503' => 'shi',
		'SHI01718' => 'shi',
		'SHI03454' => 'shi',
		'SHI03493' => 'shi',
		'SHI03494' => 'shi',
		'SHI03628' => 'shi',
		'SHI04457' => 'shi',
		'SHI04691' => 'shi',
		'SHI04829' => 'shi',
		'SHI05225' => 'shi',
		'SHI06326' => 'shi',
		'SHI06505' => 'shi',
		'SHI06770' => 'shi',
		'SHI07388' => 'shi',
		'SHI07582' => 'shi',
		'SHI07583' => 'shi',
		'SHI08271' => 'shi',
		'SHI10619' => 'shi',
		'SHI10892' => 'shi',
		'SHI10910' => 'shi',
		'SHI10911' => 'shi',
		'SHI14326' => 'shi',
		'SHI14681' => 'shi',
		'SHI15017' => 'shi',
		'SHI15096' => 'shi',
		'SHI15120' => 'shi',
		'SHI15274' => 'shi',
		'SHI16232' => 'shi',
		'SHI16811' => 'shi',
		'SHI17386' => 'shi',
		'SHI17926' => 'shi',
		'SHI18293' => 'shi',
		'SHI20489' => 'shi',
		'SHI20658' => 'shi',
		'SHI20663' => 'shi',
		'SHI21566' => 'shi',
		'SHI22547' => 'shi',
		'SHI22708' => 'shi',
		'SHI22709' => 'shi',
		'SHI22878' => 'shi',
		'SHI22879' => 'shi',
		'SHI23024' => 'shi',
		'SHI25053' => 'shi',
		'SHI25076' => 'shi',
		'SHI25116' => 'shi',
		'SHI25381' => 'shi',
		'SHI25535' => 'shi',
		'SHI25740' => 'shi',
		'SHI25991' => 'shi',
		'SHI26344' => 'shi',
		'SHI26345' => 'shi',
		'SHI27097' => 'shi',
		'SHI27140' => 'shi',
		'SHI27178' => 'shi',
		'SHI27207' => 'shi',
		'SHI27225' => 'shi',
		'SHI27734' => 'shi',
		'SHI27806' => 'shi',
		'SHI28576' => 'shi',
		'SHI29081' => 'shi',
		'SHI30038' => 'shi',
		'SHI30394' => 'shi',
		'SHI30652' => 'shi',
		'SHI32154' => 'shi',
		'SHI32205' => 'shi',
		'SHI32365' => 'shi',
		'SHI32439' => 'shi',
		'SHI32505' => 'shi',
		'SHI32626' => 'shi',
		'SHI32714' => 'shi',
		'SHI32715' => 'shi',
		'SHI32716' => 'shi',
		'SHI33118' => 'shi',
		'SHI33318' => 'shi',
		'SHI33373' => 'shi',
		'SHI33512' => 'shi',
		'SHI33625' => 'shi',
		'SHI34327' => 'shi',
		'SHI35604' => 'shi',
		'SHI36119' => 'shi',
		'SHI36120' => 'shi',
		'SHI44959' => 'shi',
		'SHI46406' => 'shi',
		'SHI48191' => 'shi',
		'SHI48192' => 'shi',
		'Solyc10g150111.1' => 'sly',
		'Solyc12g062340.2' => 'sly',
		'Sopen00g001750' => 'spe',
		'Sopen00g001820' => 'spe',
		'Sopen00g001830' => 'spe',
		'Sopen00g001890' => 'spe',
		'Sopen00g002240' => 'spe',
		'Sopen00g003950' => 'spe',
		'Sopen00g004130' => 'spe',
		'Sopen00g004810' => 'spe',
		'Sopen00g005120' => 'spe',
		'Sopen00g005190' => 'spe',
		'Sopen00g007000' => 'spe',
		'Sopen00g007210' => 'spe',
		'Sopen00g012840' => 'spe',
		'Sopen00g013060' => 'spe',
		'Sopen00g013610' => 'spe',
		'Sopen00g013630' => 'spe',
		'Sopen01g004610' => 'spe',
		'Sopen01g007660' => 'spe',
		'Sopen01g007750' => 'spe',
		'Sopen01g007760' => 'spe',
		'Sopen01g007770' => 'spe',
		'Sopen01g007860' => 'spe',
		'Sopen01g009130' => 'spe',
		'Sopen01g009820' => 'spe',
		'Sopen01g011240' => 'spe',
		'Sopen01g012740' => 'spe',
		'Sopen01g013840' => 'spe',
		'Sopen01g013850' => 'spe',
		'Sopen01g016140' => 'spe',
		'Sopen01g016150' => 'spe',
		'Sopen01g016830' => 'spe',
		'Sopen01g017260' => 'spe',
		'Sopen01g019000' => 'spe',
		'Sopen01g019690' => 'spe',
		'Sopen01g022160' => 'spe',
		'Sopen01g024000' => 'spe',
		'Sopen01g024670' => 'spe',
		'Sopen01g024770' => 'spe',
		'Sopen01g024900' => 'spe',
		'Sopen01g025130' => 'spe',
		'Sopen01g026370' => 'spe',
		'Sopen01g041640' => 'spe',
		'Sopen01g046930' => 'spe',
		'Sopen02g001360' => 'spe',
		'Sopen02g002010' => 'spe',
		'Sopen02g003600' => 'spe',
		'Sopen02g003730' => 'spe',
		'Sopen02g005430' => 'spe',
		'Sopen02g005510' => 'spe',
		'Sopen02g006840' => 'spe',
		'Sopen02g007390' => 'spe',
		'Sopen02g007420' => 'spe',
		'Sopen02g007540' => 'spe',
		'Sopen02g007920' => 'spe',
		'Sopen02g008960' => 'spe',
		'Sopen02g009450' => 'spe',
		'Sopen02g009460' => 'spe',
		'Sopen02g011320' => 'spe',
		'Sopen02g012680' => 'spe',
		'Sopen02g018090' => 'spe',
		'Sopen02g022140' => 'spe',
		'Sopen03g010330' => 'spe',
		'Sopen03g013130' => 'spe',
		'Sopen03g013180' => 'spe',
		'Sopen03g013230' => 'spe',
		'Sopen03g014110' => 'spe',
		'Sopen03g015260' => 'spe',
		'Sopen03g015790' => 'spe',
		'Sopen03g018360' => 'spe',
		'Sopen03g024470' => 'spe',
		'Sopen03g026800' => 'spe',
		'Sopen04g003180' => 'spe',
		'Sopen04g008260' => 'spe',
		'Sopen04g010320' => 'spe',
		'Sopen04g011020' => 'spe',
		'Sopen04g011200' => 'spe',
		'Sopen04g011280' => 'spe',
		'Sopen04g021910' => 'spe',
		'Sopen04g023870' => 'spe',
		'Sopen05g009880' => 'spe',
		'Sopen05g011580' => 'spe',
		'Sopen05g012230' => 'spe',
		'Sopen05g012500' => 'spe',
		'Sopen05g012560' => 'spe',
		'Sopen05g012570' => 'spe',
		'Sopen05g012760' => 'spe',
		'Sopen05g013710' => 'spe',
		'Sopen05g015050' => 'spe',
		'Sopen05g026090' => 'spe',
		'Sopen05g028020' => 'spe',
		'Sopen05g028610' => 'spe',
		'Sopen05g029300' => 'spe',
		'Sopen06g005520' => 'spe',
		'Sopen06g006750' => 'spe',
		'Sopen06g008160' => 'spe',
		'Sopen06g009120' => 'spe',
		'Sopen06g013550' => 'spe',
		'Sopen06g015340' => 'spe',
		'Sopen06g018330' => 'spe',
		'Sopen06g021630' => 'spe',
		'Sopen06g021650' => 'spe',
		'Sopen07g006730' => 'spe',
		'Sopen07g008690' => 'spe',
		'Sopen07g008700' => 'spe',
		'Sopen07g008720' => 'spe',
		'Sopen07g008870' => 'spe',
		'Sopen07g009400' => 'spe',
		'Sopen07g009410' => 'spe',
		'Sopen07g009470' => 'spe',
		'Sopen07g009540' => 'spe',
		'Sopen07g011060' => 'spe',
		'Sopen07g011110' => 'spe',
		'Sopen07g011820' => 'spe',
		'Sopen07g013260' => 'spe',
		'Sopen07g014740' => 'spe',
		'Sopen07g015160' => 'spe',
		'Sopen07g015230' => 'spe',
		'Sopen07g016240' => 'spe',
		'Sopen07g017200' => 'spe',
		'Sopen07g017810' => 'spe',
		'Sopen07g019030' => 'spe',
		'Sopen07g020430' => 'spe',
		'Sopen07g021010' => 'spe',
		'Sopen07g021340' => 'spe',
		'Sopen07g022950' => 'spe',
		'Sopen07g027860' => 'spe',
		'Sopen08g007820' => 'spe',
		'Sopen08g009330' => 'spe',
		'Sopen08g012310' => 'spe',
		'Sopen08g012560' => 'spe',
		'Sopen08g014040' => 'spe',
		'Sopen08g014650' => 'spe',
		'Sopen08g017020' => 'spe',
		'Sopen08g018300' => 'spe',
		'Sopen08g020530' => 'spe',
		'Sopen09g008590' => 'spe',
		'Sopen09g008780' => 'spe',
		'Sopen09g011540' => 'spe',
		'Sopen09g011920' => 'spe',
		'Sopen09g014170' => 'spe',
		'Sopen09g016520' => 'spe',
		'Sopen09g021030' => 'spe',
		'Sopen09g023110' => 'spe',
		'Sopen09g024750' => 'spe',
		'Sopen09g025230' => 'spe',
		'Sopen09g025600' => 'spe',
		'Sopen09g034660' => 'spe',
		'Sopen10g006700' => 'spe',
		'Sopen10g009130' => 'spe',
		'Sopen10g009140' => 'spe',
		'Sopen10g009560' => 'spe',
		'Sopen10g010340' => 'spe',
		'Sopen10g011040' => 'spe',
		'Sopen10g013650' => 'spe',
		'Sopen10g014130' => 'spe',
		'Sopen10g014140' => 'spe',
		'Sopen10g014760' => 'spe',
		'Sopen10g015080' => 'spe',
		'Sopen10g015830' => 'spe',
		'Sopen10g018240' => 'spe',
		'Sopen10g018300' => 'spe',
		'Sopen10g018350' => 'spe',
		'Sopen10g018460' => 'spe',
		'Sopen10g018670' => 'spe',
		'Sopen10g019040' => 'spe',
		'Sopen10g019330' => 'spe',
		'Sopen10g019340' => 'spe',
		'Sopen10g019360' => 'spe',
		'Sopen10g019370' => 'spe',
		'Sopen10g020620' => 'spe',
		'Sopen10g021550' => 'spe',
		'Sopen10g022160' => 'spe',
		'Sopen10g023540' => 'spe',
		'Sopen10g023570' => 'spe',
		'Sopen10g023580' => 'spe',
		'Sopen10g023600' => 'spe',
		'Sopen10g023620' => 'spe',
		'Sopen10g023650' => 'spe',
		'Sopen10g024800' => 'spe',
		'Sopen10g026170' => 'spe',
		'Sopen11g007790' => 'spe',
		'Sopen11g010170' => 'spe',
		'Sopen11g010580' => 'spe',
		'Sopen11g013420' => 'spe',
		'Sopen11g016330' => 'spe',
		'Sopen11g017010' => 'spe',
		'Sopen11g018110' => 'spe',
		'Sopen11g018960' => 'spe',
		'Sopen11g019000' => 'spe',
		'Sopen11g019970' => 'spe',
		'Sopen11g020340' => 'spe',
		'Sopen11g020970' => 'spe',
		'Sopen12g008510' => 'spe',
		'Sopen12g008910' => 'spe',
		'Sopen12g009010' => 'spe',
		'Sopen12g009120' => 'spe',
		'Sopen12g009340' => 'spe',
		'Sopen12g009580' => 'spe',
		'Sopen12g010190' => 'spe',
		'Sopen12g010320' => 'spe',
		'Sopen12g010370' => 'spe',
		'Sopen12g012140' => 'spe',
		'Sopen12g012700' => 'spe',
		'Sopen12g013490' => 'spe',
		'Sopen12g014290' => 'spe',
		'Sopen12g015060' => 'spe',
		'Sopen12g015610' => 'spe',
		'Sopen12g018380' => 'spe',
		'Sopen12g019150' => 'spe',
		'Sopen12g020560' => 'spe',
		'Sopen12g023320' => 'spe',
		'Sp3g24190' => 'spa',
		'Sp4g07270' => 'spa',
		'Sp4g07530' => 'spa',
		'Sp4g07670' => 'spa',
		'Sp6g09360' => 'spa',
		'Sp7g04180' => 'spa',
		'Sp7g04980' => 'spa',
		'Sp7g08200' => 'spa',
		'Sp7g09660' => 'spa',
		'SpUn0081_0010' => 'spa',
		'THA.LOC104803417' => 'tha',
		'THA.LOC104817059' => 'tha',
		'Thecc.01G188700' => 'tca',
		'Thecc.05G106700' => 'tca',
		'Thecc.06G068800' => 'tca',
		'Thecc.07G189100' => 'tca',
		'Thecc.09G172800' => 'tca',
		'Thhalv10023044m.g' => 'esa',
		'Thhalv10023881m.g' => 'esa',
		'Thhalv10024067m.g' => 'esa'
	),
	'gf_id' => 'HOM05D000691',
	'gf_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'gf_types_configuration' => array(
		'HOMFAM' => array(
			'order' => '1',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		),
		'ORTHOFAM' => array(
			'order' => '2',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		)
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'allow_async_use' => true,
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D000691'
	),
	'data_identifier' => 'HOM05D000691',
	'data_type' => 'gf_id'
)
$sidebar_info = array(
	'gf_id' => 'HOM05D000691',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '827',
	'num_species' => '39'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$gf_genes = array(
	'Ah.01g012340' => 'amhyb',
	'Ah.01g013530' => 'amhyb',
	'Ah.03g143080' => 'amhyb',
	'Ah.06g186750' => 'amhyb',
	'Ah.06g186800' => 'amhyb',
	'Ah.07g200050' => 'amhyb',
	'Ah.08g209110' => 'amhyb',
	'Ah.09g229600' => 'amhyb',
	'Ah.09g229610' => 'amhyb',
	'Ah.10g026490' => 'amhyb',
	'Ah.12g065350' => 'amhyb',
	'Ah.13g069310' => 'amhyb',
	'Ah.14g080130' => 'amhyb',
	'Ah.14g081130' => 'amhyb',
	'Ah.14g081140' => 'amhyb',
	'Ah.16g109160' => 'amhyb',
	'Ah.16g109170' => 'amhyb',
	'Ah.16g109370' => 'amhyb',
	'AL3G47720' => 'aly',
	'ATR0012G060' => 'atr',
	'ATR0026G029' => 'atr',
	'ATR0193G043' => 'atr',
	'ATR0561G076' => 'atr',
	'ATR0561G181' => 'atr',
	'ATR0568G014' => 'atr',
	'ATR0568G114' => 'atr',
	'ATR0620G039' => 'atr',
	'ATR0629G125' => 'atr',
	'ATR0661G583' => 'atr',
	'ATR0686G019' => 'atr',
	'ATR0693G232' => 'atr',
	'ATR0697G104' => 'atr',
	'ATR0789G146' => 'atr',
	'ATR0794G066' => 'atr',
	'ATR1127G127' => 'atr',
	'ATR1131G040' => 'atr',
	'ATR1134G004' => 'atr',
	'ATR1134G095' => 'atr',
	'ATR1152G110' => 'atr',
	'ATR1153G065' => 'atr',
	'Atru.chr3.2296' => 'acertr',
	'AUR62000692' => 'cqu',
	'AUR62001473' => 'cqu',
	'AUR62001812' => 'cqu',
	'AUR62002706' => 'cqu',
	'AUR62003904' => 'cqu',
	'AUR62003905' => 'cqu',
	'AUR62004840' => 'cqu',
	'AUR62005160' => 'cqu',
	'AUR62005604' => 'cqu',
	'AUR62005891' => 'cqu',
	'AUR62007290' => 'cqu',
	'AUR62007502' => 'cqu',
	'AUR62007923' => 'cqu',
	'AUR62009972' => 'cqu',
	'AUR62010488' => 'cqu',
	'AUR62010643' => 'cqu',
	'AUR62012637' => 'cqu',
	'AUR62013492' => 'cqu',
	'AUR62014239' => 'cqu',
	'AUR62014878' => 'cqu',
	'AUR62015857' => 'cqu',
	'AUR62016224' => 'cqu',
	'AUR62017430' => 'cqu',
	'AUR62017467' => 'cqu',
	'AUR62018234' => 'cqu',
	'AUR62019060' => 'cqu',
	'AUR62019607' => 'cqu',
	'AUR62019661' => 'cqu',
	'AUR62022775' => 'cqu',
	'AUR62023603' => 'cqu',
	'AUR62024563' => 'cqu',
	'AUR62026199' => 'cqu',
	'AUR62026905' => 'cqu',
	'AUR62028639' => 'cqu',
	'AUR62029168' => 'cqu',
	'AUR62029551' => 'cqu',
	'AUR62029860' => 'cqu',
	'AUR62030164' => 'cqu',
	'AUR62031208' => 'cqu',
	'AUR62031287' => 'cqu',
	'AUR62031817' => 'cqu',
	'AUR62032126' => 'cqu',
	'AUR62032358' => 'cqu',
	'AUR62032884' => 'cqu',
	'AUR62032892' => 'cqu',
	'AUR62033082' => 'cqu',
	'AUR62033100' => 'cqu',
	'AUR62033255' => 'cqu',
	'AUR62033698' => 'cqu',
	'AUR62033757' => 'cqu',
	'AUR62034760' => 'cqu',
	'AUR62034860' => 'cqu',
	'AUR62035179' => 'cqu',
	'AUR62035881' => 'cqu',
	'AUR62036824' => 'cqu',
	'AUR62036876' => 'cqu',
	'AUR62037319' => 'cqu',
	'AUR62037362' => 'cqu',
	'AUR62037541' => 'cqu',
	'AUR62037853' => 'cqu',
	'AUR62038299' => 'cqu',
	'AUR62038563' => 'cqu',
	'AUR62038564' => 'cqu',
	'AUR62038594' => 'cqu',
	'AUR62038792' => 'cqu',
	'AUR62038947' => 'cqu',
	'AUR62039030' => 'cqu',
	'AUR62039231' => 'cqu',
	'AUR62039452' => 'cqu',
	'AUR62040334' => 'cqu',
	'AUR62040869' => 'cqu',
	'AUR62040870' => 'cqu',
	'AUR62040916' => 'cqu',
	'AUR62041199' => 'cqu',
	'AUR62041334' => 'cqu',
	'AUR62041608' => 'cqu',
	'AUR62041609' => 'cqu',
	'AUR62041833' => 'cqu',
	'AUR62041834' => 'cqu',
	'AUR62042054' => 'cqu',
	'AUR62042134' => 'cqu',
	'AUR62042236' => 'cqu',
	'AUR62042281' => 'cqu',
	'AUR62042593' => 'cqu',
	'AUR62042653' => 'cqu',
	'AUR62043025' => 'cqu',
	'AUR62043026' => 'cqu',
	'AUR62043063' => 'cqu',
	'AUR62043091' => 'cqu',
	'AUR62043320' => 'cqu',
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	'Sopen01g024900' => 'spe',
	'Sopen01g025130' => 'spe',
	'Sopen01g026370' => 'spe',
	'Sopen01g041640' => 'spe',
	'Sopen01g046930' => 'spe',
	'Sopen02g001360' => 'spe',
	'Sopen02g002010' => 'spe',
	'Sopen02g003600' => 'spe',
	'Sopen02g003730' => 'spe',
	'Sopen02g005430' => 'spe',
	'Sopen02g005510' => 'spe',
	'Sopen02g006840' => 'spe',
	'Sopen02g007390' => 'spe',
	'Sopen02g007420' => 'spe',
	'Sopen02g007540' => 'spe',
	'Sopen02g007920' => 'spe',
	'Sopen02g008960' => 'spe',
	'Sopen02g009450' => 'spe',
	'Sopen02g009460' => 'spe',
	'Sopen02g011320' => 'spe',
	'Sopen02g012680' => 'spe',
	'Sopen02g018090' => 'spe',
	'Sopen02g022140' => 'spe',
	'Sopen03g010330' => 'spe',
	'Sopen03g013130' => 'spe',
	'Sopen03g013180' => 'spe',
	'Sopen03g013230' => 'spe',
	'Sopen03g014110' => 'spe',
	'Sopen03g015260' => 'spe',
	'Sopen03g015790' => 'spe',
	'Sopen03g018360' => 'spe',
	'Sopen03g024470' => 'spe',
	'Sopen03g026800' => 'spe',
	'Sopen04g003180' => 'spe',
	'Sopen04g008260' => 'spe',
	'Sopen04g010320' => 'spe',
	'Sopen04g011020' => 'spe',
	'Sopen04g011200' => 'spe',
	'Sopen04g011280' => 'spe',
	'Sopen04g021910' => 'spe',
	'Sopen04g023870' => 'spe',
	'Sopen05g009880' => 'spe',
	'Sopen05g011580' => 'spe',
	'Sopen05g012230' => 'spe',
	'Sopen05g012500' => 'spe',
	'Sopen05g012560' => 'spe',
	'Sopen05g012570' => 'spe',
	'Sopen05g012760' => 'spe',
	'Sopen05g013710' => 'spe',
	'Sopen05g015050' => 'spe',
	'Sopen05g026090' => 'spe',
	'Sopen05g028020' => 'spe',
	'Sopen05g028610' => 'spe',
	'Sopen05g029300' => 'spe',
	'Sopen06g005520' => 'spe',
	'Sopen06g006750' => 'spe',
	'Sopen06g008160' => 'spe',
	'Sopen06g009120' => 'spe',
	'Sopen06g013550' => 'spe',
	'Sopen06g015340' => 'spe',
	'Sopen06g018330' => 'spe',
	'Sopen06g021630' => 'spe',
	'Sopen06g021650' => 'spe',
	'Sopen07g006730' => 'spe',
	'Sopen07g008690' => 'spe',
	'Sopen07g008700' => 'spe',
	'Sopen07g008720' => 'spe',
	'Sopen07g008870' => 'spe',
	'Sopen07g009400' => 'spe',
	'Sopen07g009410' => 'spe',
	'Sopen07g009470' => 'spe',
	'Sopen07g009540' => 'spe',
	'Sopen07g011060' => 'spe',
	'Sopen07g011110' => 'spe',
	'Sopen07g011820' => 'spe',
	'Sopen07g013260' => 'spe',
	'Sopen07g014740' => 'spe',
	'Sopen07g015160' => 'spe',
	'Sopen07g015230' => 'spe',
	'Sopen07g016240' => 'spe',
	'Sopen07g017200' => 'spe',
	'Sopen07g017810' => 'spe',
	'Sopen07g019030' => 'spe',
	'Sopen07g020430' => 'spe',
	'Sopen07g021010' => 'spe',
	'Sopen07g021340' => 'spe',
	'Sopen07g022950' => 'spe',
	'Sopen07g027860' => 'spe',
	'Sopen08g007820' => 'spe',
	'Sopen08g009330' => 'spe',
	'Sopen08g012310' => 'spe',
	'Sopen08g012560' => 'spe',
	'Sopen08g014040' => 'spe',
	'Sopen08g014650' => 'spe',
	'Sopen08g017020' => 'spe',
	'Sopen08g018300' => 'spe',
	'Sopen08g020530' => 'spe',
	'Sopen09g008590' => 'spe',
	'Sopen09g008780' => 'spe',
	'Sopen09g011540' => 'spe',
	'Sopen09g011920' => 'spe',
	'Sopen09g014170' => 'spe',
	'Sopen09g016520' => 'spe',
	'Sopen09g021030' => 'spe',
	'Sopen09g023110' => 'spe',
	'Sopen09g024750' => 'spe',
	'Sopen09g025230' => 'spe',
	'Sopen09g025600' => 'spe',
	'Sopen09g034660' => 'spe',
	'Sopen10g006700' => 'spe',
	'Sopen10g009130' => 'spe',
	'Sopen10g009140' => 'spe',
	'Sopen10g009560' => 'spe',
	'Sopen10g010340' => 'spe',
	'Sopen10g011040' => 'spe',
	'Sopen10g013650' => 'spe',
	'Sopen10g014130' => 'spe',
	'Sopen10g014140' => 'spe',
	'Sopen10g014760' => 'spe',
	'Sopen10g015080' => 'spe',
	'Sopen10g015830' => 'spe',
	'Sopen10g018240' => 'spe',
	'Sopen10g018300' => 'spe',
	'Sopen10g018350' => 'spe',
	'Sopen10g018460' => 'spe',
	'Sopen10g018670' => 'spe',
	'Sopen10g019040' => 'spe',
	'Sopen10g019330' => 'spe',
	'Sopen10g019340' => 'spe',
	'Sopen10g019360' => 'spe',
	'Sopen10g019370' => 'spe',
	'Sopen10g020620' => 'spe',
	'Sopen10g021550' => 'spe',
	'Sopen10g022160' => 'spe',
	'Sopen10g023540' => 'spe',
	'Sopen10g023570' => 'spe',
	'Sopen10g023580' => 'spe',
	'Sopen10g023600' => 'spe',
	'Sopen10g023620' => 'spe',
	'Sopen10g023650' => 'spe',
	'Sopen10g024800' => 'spe',
	'Sopen10g026170' => 'spe',
	'Sopen11g007790' => 'spe',
	'Sopen11g010170' => 'spe',
	'Sopen11g010580' => 'spe',
	'Sopen11g013420' => 'spe',
	'Sopen11g016330' => 'spe',
	'Sopen11g017010' => 'spe',
	'Sopen11g018110' => 'spe',
	'Sopen11g018960' => 'spe',
	'Sopen11g019000' => 'spe',
	'Sopen11g019970' => 'spe',
	'Sopen11g020340' => 'spe',
	'Sopen11g020970' => 'spe',
	'Sopen12g008510' => 'spe',
	'Sopen12g008910' => 'spe',
	'Sopen12g009010' => 'spe',
	'Sopen12g009120' => 'spe',
	'Sopen12g009340' => 'spe',
	'Sopen12g009580' => 'spe',
	'Sopen12g010190' => 'spe',
	'Sopen12g010320' => 'spe',
	'Sopen12g010370' => 'spe',
	'Sopen12g012140' => 'spe',
	'Sopen12g012700' => 'spe',
	'Sopen12g013490' => 'spe',
	'Sopen12g014290' => 'spe',
	'Sopen12g015060' => 'spe',
	'Sopen12g015610' => 'spe',
	'Sopen12g018380' => 'spe',
	'Sopen12g019150' => 'spe',
	'Sopen12g020560' => 'spe',
	'Sopen12g023320' => 'spe',
	'Sp3g24190' => 'spa',
	'Sp4g07270' => 'spa',
	'Sp4g07530' => 'spa',
	'Sp4g07670' => 'spa',
	'Sp6g09360' => 'spa',
	'Sp7g04180' => 'spa',
	'Sp7g04980' => 'spa',
	'Sp7g08200' => 'spa',
	'Sp7g09660' => 'spa',
	'SpUn0081_0010' => 'spa',
	'THA.LOC104803417' => 'tha',
	'THA.LOC104817059' => 'tha',
	'Thecc.01G188700' => 'tca',
	'Thecc.05G106700' => 'tca',
	'Thecc.06G068800' => 'tca',
	'Thecc.07G189100' => 'tca',
	'Thecc.09G172800' => 'tca',
	'Thhalv10023044m.g' => 'esa',
	'Thhalv10023881m.g' => 'esa',
	'Thhalv10024067m.g' => 'esa'
)
$gf_id = 'HOM05D000691'
$gf_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$gf_types_configuration = array(
	'HOMFAM' => array(
		'order' => '1',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	),
	'ORTHOFAM' => array(
		'order' => '2',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	)
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$allow_async_use = true
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D000691'
)
$data_identifier = 'HOM05D000691'
$data_type = 'gf_id'
$species_gene_counts = array(
	'amhyb' => (int) 18,
	'aly' => (int) 1,
	'atr' => (int) 21,
	'acertr' => (int) 1,
	'cqu' => (int) 90,
	'bol' => (int) 1,
	'can' => (int) 7,
	'cil' => (int) 3,
	'cla' => (int) 15,
	'col' => (int) 1,
	'cpa' => (int) 2,
	'csa' => (int) 7,
	'camsi' => (int) 10,
	'din' => (int) 1,
	'dzi' => (int) 2,
	'bvu' => (int) 18,
	'fve' => (int) 22,
	'gra' => (int) 1,
	'han' => (int) 7,
	'hma' => (int) 9,
	'sun' => (int) 16,
	'lonja' => (int) 46,
	'mes' => (int) 8,
	'mbi' => (int) 2,
	'cme' => (int) 6,
	'oeu' => (int) 110,
	'stu' => (int) 45,
	'ptr' => (int) 1,
	'rch' => (int) 1,
	'sci' => (int) 1,
	'sgi' => (int) 31,
	'sas' => (int) 1,
	'shi' => (int) 89,
	'sly' => (int) 2,
	'spe' => (int) 211,
	'spa' => (int) 10,
	'tha' => (int) 2,
	'tca' => (int) 5,
	'esa' => (int) 3
)
$gf_gene_species = 'esa'
$gf_gene_id = 'Thhalv10024067m.g'
$species_info = array(
	'species' => 'sly',
	'common_name' => 'Solanum lycopersicum',
	'tax_id' => '4081',
	'version' => 'ITAG4.0'
)
$local_species = 'sly'
$disabled = ''
$selected = ''
$num_hits = (int) 1
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Analysis/custom_tree_creation.ctp, line 27
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933

Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]
Code Context
        $disabled    = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";

        $selected    = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";

        $num_hits    = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D000691',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '827',
		'num_species' => '39'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'allowed_extra_sequences_types' => array(
		'aa' => 'Protein',
		'dna' => 'DNA'
	),
	'allowed_editing_methods' => array(
		'column' => 'Positions only',
		'row' => 'Genes only',
		'column_row' => 'Positions and Genes',
		'none' => 'No editing'
	),
	'allowed_tree_programs' => array(
		'fasttree' => 'FastTree',
		'iqtree' => 'IQ-TREE (includes model testing)',
		'raxml' => 'RAxML',
		'phyml' => 'PhyML'
	),
	'allowed_msa_programs' => array(
		'muscle' => 'MUSCLE',
		'mafft' => 'MAFFT'
	),
	'allowed_number_blasthits' => array(
		(int) 0 => 'all',
		(int) 1 => (int) 20,
		(int) 2 => (int) 10,
		(int) 3 => (int) 5,
		(int) 4 => (int) 1
	),
	'gf_genes' => array(
		'Ah.01g012340' => 'amhyb',
		'Ah.01g013530' => 'amhyb',
		'Ah.03g143080' => 'amhyb',
		'Ah.06g186750' => 'amhyb',
		'Ah.06g186800' => 'amhyb',
		'Ah.07g200050' => 'amhyb',
		'Ah.08g209110' => 'amhyb',
		'Ah.09g229600' => 'amhyb',
		'Ah.09g229610' => 'amhyb',
		'Ah.10g026490' => 'amhyb',
		'Ah.12g065350' => 'amhyb',
		'Ah.13g069310' => 'amhyb',
		'Ah.14g080130' => 'amhyb',
		'Ah.14g081130' => 'amhyb',
		'Ah.14g081140' => 'amhyb',
		'Ah.16g109160' => 'amhyb',
		'Ah.16g109170' => 'amhyb',
		'Ah.16g109370' => 'amhyb',
		'AL3G47720' => 'aly',
		'ATR0012G060' => 'atr',
		'ATR0026G029' => 'atr',
		'ATR0193G043' => 'atr',
		'ATR0561G076' => 'atr',
		'ATR0561G181' => 'atr',
		'ATR0568G014' => 'atr',
		'ATR0568G114' => 'atr',
		'ATR0620G039' => 'atr',
		'ATR0629G125' => 'atr',
		'ATR0661G583' => 'atr',
		'ATR0686G019' => 'atr',
		'ATR0693G232' => 'atr',
		'ATR0697G104' => 'atr',
		'ATR0789G146' => 'atr',
		'ATR0794G066' => 'atr',
		'ATR1127G127' => 'atr',
		'ATR1131G040' => 'atr',
		'ATR1134G004' => 'atr',
		'ATR1134G095' => 'atr',
		'ATR1152G110' => 'atr',
		'ATR1153G065' => 'atr',
		'Atru.chr3.2296' => 'acertr',
		'AUR62000692' => 'cqu',
		'AUR62001473' => 'cqu',
		'AUR62001812' => 'cqu',
		'AUR62002706' => 'cqu',
		'AUR62003904' => 'cqu',
		'AUR62003905' => 'cqu',
		'AUR62004840' => 'cqu',
		'AUR62005160' => 'cqu',
		'AUR62005604' => 'cqu',
		'AUR62005891' => 'cqu',
		'AUR62007290' => 'cqu',
		'AUR62007502' => 'cqu',
		'AUR62007923' => 'cqu',
		'AUR62009972' => 'cqu',
		'AUR62010488' => 'cqu',
		'AUR62010643' => 'cqu',
		'AUR62012637' => 'cqu',
		'AUR62013492' => 'cqu',
		'AUR62014239' => 'cqu',
		'AUR62014878' => 'cqu',
		'AUR62015857' => 'cqu',
		'AUR62016224' => 'cqu',
		'AUR62017430' => 'cqu',
		'AUR62017467' => 'cqu',
		'AUR62018234' => 'cqu',
		'AUR62019060' => 'cqu',
		'AUR62019607' => 'cqu',
		'AUR62019661' => 'cqu',
		'AUR62022775' => 'cqu',
		'AUR62023603' => 'cqu',
		'AUR62024563' => 'cqu',
		'AUR62026199' => 'cqu',
		'AUR62026905' => 'cqu',
		'AUR62028639' => 'cqu',
		'AUR62029168' => 'cqu',
		'AUR62029551' => 'cqu',
		'AUR62029860' => 'cqu',
		'AUR62030164' => 'cqu',
		'AUR62031208' => 'cqu',
		'AUR62031287' => 'cqu',
		'AUR62031817' => 'cqu',
		'AUR62032126' => 'cqu',
		'AUR62032358' => 'cqu',
		'AUR62032884' => 'cqu',
		'AUR62032892' => 'cqu',
		'AUR62033082' => 'cqu',
		'AUR62033100' => 'cqu',
		'AUR62033255' => 'cqu',
		'AUR62033698' => 'cqu',
		'AUR62033757' => 'cqu',
		'AUR62034760' => 'cqu',
		'AUR62034860' => 'cqu',
		'AUR62035179' => 'cqu',
		'AUR62035881' => 'cqu',
		'AUR62036824' => 'cqu',
		'AUR62036876' => 'cqu',
		'AUR62037319' => 'cqu',
		'AUR62037362' => 'cqu',
		'AUR62037541' => 'cqu',
		'AUR62037853' => 'cqu',
		'AUR62038299' => 'cqu',
		'AUR62038563' => 'cqu',
		'AUR62038564' => 'cqu',
		'AUR62038594' => 'cqu',
		'AUR62038792' => 'cqu',
		'AUR62038947' => 'cqu',
		'AUR62039030' => 'cqu',
		'AUR62039231' => 'cqu',
		'AUR62039452' => 'cqu',
		'AUR62040334' => 'cqu',
		'AUR62040869' => 'cqu',
		'AUR62040870' => 'cqu',
		'AUR62040916' => 'cqu',
		'AUR62041199' => 'cqu',
		'AUR62041334' => 'cqu',
		'AUR62041608' => 'cqu',
		'AUR62041609' => 'cqu',
		'AUR62041833' => 'cqu',
		'AUR62041834' => 'cqu',
		'AUR62042054' => 'cqu',
		'AUR62042134' => 'cqu',
		'AUR62042236' => 'cqu',
		'AUR62042281' => 'cqu',
		'AUR62042593' => 'cqu',
		'AUR62042653' => 'cqu',
		'AUR62043025' => 'cqu',
		'AUR62043026' => 'cqu',
		'AUR62043063' => 'cqu',
		'AUR62043091' => 'cqu',
		'AUR62043320' => 'cqu',
		'BolC5t32558H' => 'bol',
		'CAN.G1036.12' => 'can',
		'CAN.G1432.23' => 'can',
		'CAN.G159.19' => 'can',
		'CAN.G4114.1' => 'can',
		'CAN.G492.85' => 'can',
		'CAN.G500.95' => 'can',
		'CAN.G93.31' => 'can',
		'CiPaw.04G054900' => 'cil',
		'CiPaw.05G045400' => 'cil',
		'CiPaw.15G094100' => 'cil',
		'ClCG00G000700' => 'cla',
		'ClCG00G000780' => 'cla',
		'ClCG01G012280' => 'cla',
		'ClCG02G006140' => 'cla',
		'ClCG02G009810' => 'cla',
		'ClCG03G010170' => 'cla',
		'ClCG03G010260' => 'cla',
		'ClCG04G000770' => 'cla',
		'ClCG05G013980' => 'cla',
		'ClCG06G009110' => 'cla',
		'ClCG06G009120' => 'cla',
		'ClCG08G002190' => 'cla',
		'ClCG09G013830' => 'cla',
		'ClCG10G006760' => 'cla',
		'ClCG11G007310' => 'cla',
		'COL.COLO4_16141' => 'col',
		'Cpa.g.sc202.2' => 'cpa',
		'Cpa.g.sc76.18' => 'cpa',
		'CsaV3_1G031080' => 'csa',
		'CsaV3_4G011870' => 'csa',
		'CsaV3_4G014860' => 'csa',
		'CsaV3_4G021860' => 'csa',
		'CsaV3_6G009880' => 'csa',
		'CsaV3_7G021240' => 'csa',
		'CsaV3_UNG240600' => 'csa',
		'CSS0003516' => 'camsi',
		'CSS0013023' => 'camsi',
		'CSS0017680' => 'camsi',
		'CSS0018551' => 'camsi',
		'CSS0026792' => 'camsi',
		'CSS0028271' => 'camsi',
		'CSS0033603' => 'camsi',
		'CSS0040789' => 'camsi',
		'CSS0045068' => 'camsi',
		'CSS0045803' => 'camsi',
		'Dinv10528' => 'din',
		'Duzib116G0875' => 'dzi',
		'Duzib128G0055' => 'dzi',
		'EL10Ac1g02377' => 'bvu',
		'EL10Ac1g02378' => 'bvu',
		'EL10Ac2g03486' => 'bvu',
		'EL10Ac2g03487' => 'bvu',
		'EL10Ac3g05722' => 'bvu',
		'EL10Ac3g06186' => 'bvu',
		'EL10Ac5g11258' => 'bvu',
		'EL10Ac6g13831' => 'bvu',
		'EL10Ac6g14162' => 'bvu',
		'EL10Ac6g14316' => 'bvu',
		'EL10Ac6g14317' => 'bvu',
		'EL10Ac6g14588' => 'bvu',
		'EL10Ac7g16302' => 'bvu',
		'EL10Ac7g16543' => 'bvu',
		'EL10Ac8g18762' => 'bvu',
		'EL10Ac9g20847' => 'bvu',
		'EL10As7g23731' => 'bvu',
		'EL10As7g23732' => 'bvu',
		'FvH4_1g23713' => 'fve',
		'FvH4_2g00261' => 'fve',
		'FvH4_2g00262' => 'fve',
		'FvH4_2g15681' => 'fve',
		'FvH4_2g17851' => 'fve',
		'FvH4_3g10531' => 'fve',
		'FvH4_3g33536' => 'fve',
		'FvH4_4g03471' => 'fve',
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		'Sopen05g013710' => 'spe',
		'Sopen05g015050' => 'spe',
		'Sopen05g026090' => 'spe',
		'Sopen05g028020' => 'spe',
		'Sopen05g028610' => 'spe',
		'Sopen05g029300' => 'spe',
		'Sopen06g005520' => 'spe',
		'Sopen06g006750' => 'spe',
		'Sopen06g008160' => 'spe',
		'Sopen06g009120' => 'spe',
		'Sopen06g013550' => 'spe',
		'Sopen06g015340' => 'spe',
		'Sopen06g018330' => 'spe',
		'Sopen06g021630' => 'spe',
		'Sopen06g021650' => 'spe',
		'Sopen07g006730' => 'spe',
		'Sopen07g008690' => 'spe',
		'Sopen07g008700' => 'spe',
		'Sopen07g008720' => 'spe',
		'Sopen07g008870' => 'spe',
		'Sopen07g009400' => 'spe',
		'Sopen07g009410' => 'spe',
		'Sopen07g009470' => 'spe',
		'Sopen07g009540' => 'spe',
		'Sopen07g011060' => 'spe',
		'Sopen07g011110' => 'spe',
		'Sopen07g011820' => 'spe',
		'Sopen07g013260' => 'spe',
		'Sopen07g014740' => 'spe',
		'Sopen07g015160' => 'spe',
		'Sopen07g015230' => 'spe',
		'Sopen07g016240' => 'spe',
		'Sopen07g017200' => 'spe',
		'Sopen07g017810' => 'spe',
		'Sopen07g019030' => 'spe',
		'Sopen07g020430' => 'spe',
		'Sopen07g021010' => 'spe',
		'Sopen07g021340' => 'spe',
		'Sopen07g022950' => 'spe',
		'Sopen07g027860' => 'spe',
		'Sopen08g007820' => 'spe',
		'Sopen08g009330' => 'spe',
		'Sopen08g012310' => 'spe',
		'Sopen08g012560' => 'spe',
		'Sopen08g014040' => 'spe',
		'Sopen08g014650' => 'spe',
		'Sopen08g017020' => 'spe',
		'Sopen08g018300' => 'spe',
		'Sopen08g020530' => 'spe',
		'Sopen09g008590' => 'spe',
		'Sopen09g008780' => 'spe',
		'Sopen09g011540' => 'spe',
		'Sopen09g011920' => 'spe',
		'Sopen09g014170' => 'spe',
		'Sopen09g016520' => 'spe',
		'Sopen09g021030' => 'spe',
		'Sopen09g023110' => 'spe',
		'Sopen09g024750' => 'spe',
		'Sopen09g025230' => 'spe',
		'Sopen09g025600' => 'spe',
		'Sopen09g034660' => 'spe',
		'Sopen10g006700' => 'spe',
		'Sopen10g009130' => 'spe',
		'Sopen10g009140' => 'spe',
		'Sopen10g009560' => 'spe',
		'Sopen10g010340' => 'spe',
		'Sopen10g011040' => 'spe',
		'Sopen10g013650' => 'spe',
		'Sopen10g014130' => 'spe',
		'Sopen10g014140' => 'spe',
		'Sopen10g014760' => 'spe',
		'Sopen10g015080' => 'spe',
		'Sopen10g015830' => 'spe',
		'Sopen10g018240' => 'spe',
		'Sopen10g018300' => 'spe',
		'Sopen10g018350' => 'spe',
		'Sopen10g018460' => 'spe',
		'Sopen10g018670' => 'spe',
		'Sopen10g019040' => 'spe',
		'Sopen10g019330' => 'spe',
		'Sopen10g019340' => 'spe',
		'Sopen10g019360' => 'spe',
		'Sopen10g019370' => 'spe',
		'Sopen10g020620' => 'spe',
		'Sopen10g021550' => 'spe',
		'Sopen10g022160' => 'spe',
		'Sopen10g023540' => 'spe',
		'Sopen10g023570' => 'spe',
		'Sopen10g023580' => 'spe',
		'Sopen10g023600' => 'spe',
		'Sopen10g023620' => 'spe',
		'Sopen10g023650' => 'spe',
		'Sopen10g024800' => 'spe',
		'Sopen10g026170' => 'spe',
		'Sopen11g007790' => 'spe',
		'Sopen11g010170' => 'spe',
		'Sopen11g010580' => 'spe',
		'Sopen11g013420' => 'spe',
		'Sopen11g016330' => 'spe',
		'Sopen11g017010' => 'spe',
		'Sopen11g018110' => 'spe',
		'Sopen11g018960' => 'spe',
		'Sopen11g019000' => 'spe',
		'Sopen11g019970' => 'spe',
		'Sopen11g020340' => 'spe',
		'Sopen11g020970' => 'spe',
		'Sopen12g008510' => 'spe',
		'Sopen12g008910' => 'spe',
		'Sopen12g009010' => 'spe',
		'Sopen12g009120' => 'spe',
		'Sopen12g009340' => 'spe',
		'Sopen12g009580' => 'spe',
		'Sopen12g010190' => 'spe',
		'Sopen12g010320' => 'spe',
		'Sopen12g010370' => 'spe',
		'Sopen12g012140' => 'spe',
		'Sopen12g012700' => 'spe',
		'Sopen12g013490' => 'spe',
		'Sopen12g014290' => 'spe',
		'Sopen12g015060' => 'spe',
		'Sopen12g015610' => 'spe',
		'Sopen12g018380' => 'spe',
		'Sopen12g019150' => 'spe',
		'Sopen12g020560' => 'spe',
		'Sopen12g023320' => 'spe',
		'Sp3g24190' => 'spa',
		'Sp4g07270' => 'spa',
		'Sp4g07530' => 'spa',
		'Sp4g07670' => 'spa',
		'Sp6g09360' => 'spa',
		'Sp7g04180' => 'spa',
		'Sp7g04980' => 'spa',
		'Sp7g08200' => 'spa',
		'Sp7g09660' => 'spa',
		'SpUn0081_0010' => 'spa',
		'THA.LOC104803417' => 'tha',
		'THA.LOC104817059' => 'tha',
		'Thecc.01G188700' => 'tca',
		'Thecc.05G106700' => 'tca',
		'Thecc.06G068800' => 'tca',
		'Thecc.07G189100' => 'tca',
		'Thecc.09G172800' => 'tca',
		'Thhalv10023044m.g' => 'esa',
		'Thhalv10023881m.g' => 'esa',
		'Thhalv10024067m.g' => 'esa'
	),
	'gf_id' => 'HOM05D000691',
	'gf_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'gf_types_configuration' => array(
		'HOMFAM' => array(
			'order' => '1',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		),
		'ORTHOFAM' => array(
			'order' => '2',
			'show_parentless_subfamilies' => 'false',
			'show_table' => 'true',
			'show_orphan' => false
		)
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'allow_async_use' => true,
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D000691'
	),
	'data_identifier' => 'HOM05D000691',
	'data_type' => 'gf_id'
)
$sidebar_info = array(
	'gf_id' => 'HOM05D000691',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '827',
	'num_species' => '39'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$allowed_extra_sequences_types = array(
	'aa' => 'Protein',
	'dna' => 'DNA'
)
$allowed_editing_methods = array(
	'column' => 'Positions only',
	'row' => 'Genes only',
	'column_row' => 'Positions and Genes',
	'none' => 'No editing'
)
$allowed_tree_programs = array(
	'fasttree' => 'FastTree',
	'iqtree' => 'IQ-TREE (includes model testing)',
	'raxml' => 'RAxML',
	'phyml' => 'PhyML'
)
$allowed_msa_programs = array(
	'muscle' => 'MUSCLE',
	'mafft' => 'MAFFT'
)
$allowed_number_blasthits = array(
	(int) 0 => 'all',
	(int) 1 => (int) 20,
	(int) 2 => (int) 10,
	(int) 3 => (int) 5,
	(int) 4 => (int) 1
)
$gf_genes = array(
	'Ah.01g012340' => 'amhyb',
	'Ah.01g013530' => 'amhyb',
	'Ah.03g143080' => 'amhyb',
	'Ah.06g186750' => 'amhyb',
	'Ah.06g186800' => 'amhyb',
	'Ah.07g200050' => 'amhyb',
	'Ah.08g209110' => 'amhyb',
	'Ah.09g229600' => 'amhyb',
	'Ah.09g229610' => 'amhyb',
	'Ah.10g026490' => 'amhyb',
	'Ah.12g065350' => 'amhyb',
	'Ah.13g069310' => 'amhyb',
	'Ah.14g080130' => 'amhyb',
	'Ah.14g081130' => 'amhyb',
	'Ah.14g081140' => 'amhyb',
	'Ah.16g109160' => 'amhyb',
	'Ah.16g109170' => 'amhyb',
	'Ah.16g109370' => 'amhyb',
	'AL3G47720' => 'aly',
	'ATR0012G060' => 'atr',
	'ATR0026G029' => 'atr',
	'ATR0193G043' => 'atr',
	'ATR0561G076' => 'atr',
	'ATR0561G181' => 'atr',
	'ATR0568G014' => 'atr',
	'ATR0568G114' => 'atr',
	'ATR0620G039' => 'atr',
	'ATR0629G125' => 'atr',
	'ATR0661G583' => 'atr',
	'ATR0686G019' => 'atr',
	'ATR0693G232' => 'atr',
	'ATR0697G104' => 'atr',
	'ATR0789G146' => 'atr',
	'ATR0794G066' => 'atr',
	'ATR1127G127' => 'atr',
	'ATR1131G040' => 'atr',
	'ATR1134G004' => 'atr',
	'ATR1134G095' => 'atr',
	'ATR1152G110' => 'atr',
	'ATR1153G065' => 'atr',
	'Atru.chr3.2296' => 'acertr',
	'AUR62000692' => 'cqu',
	'AUR62001473' => 'cqu',
	'AUR62001812' => 'cqu',
	'AUR62002706' => 'cqu',
	'AUR62003904' => 'cqu',
	'AUR62003905' => 'cqu',
	'AUR62004840' => 'cqu',
	'AUR62005160' => 'cqu',
	'AUR62005604' => 'cqu',
	'AUR62005891' => 'cqu',
	'AUR62007290' => 'cqu',
	'AUR62007502' => 'cqu',
	'AUR62007923' => 'cqu',
	'AUR62009972' => 'cqu',
	'AUR62010488' => 'cqu',
	'AUR62010643' => 'cqu',
	'AUR62012637' => 'cqu',
	'AUR62013492' => 'cqu',
	'AUR62014239' => 'cqu',
	'AUR62014878' => 'cqu',
	'AUR62015857' => 'cqu',
	'AUR62016224' => 'cqu',
	'AUR62017430' => 'cqu',
	'AUR62017467' => 'cqu',
	'AUR62018234' => 'cqu',
	'AUR62019060' => 'cqu',
	'AUR62019607' => 'cqu',
	'AUR62019661' => 'cqu',
	'AUR62022775' => 'cqu',
	'AUR62023603' => 'cqu',
	'AUR62024563' => 'cqu',
	'AUR62026199' => 'cqu',
	'AUR62026905' => 'cqu',
	'AUR62028639' => 'cqu',
	'AUR62029168' => 'cqu',
	'AUR62029551' => 'cqu',
	'AUR62029860' => 'cqu',
	'AUR62030164' => 'cqu',
	'AUR62031208' => 'cqu',
	'AUR62031287' => 'cqu',
	'AUR62031817' => 'cqu',
	'AUR62032126' => 'cqu',
	'AUR62032358' => 'cqu',
	'AUR62032884' => 'cqu',
	'AUR62032892' => 'cqu',
	'AUR62033082' => 'cqu',
	'AUR62033100' => 'cqu',
	'AUR62033255' => 'cqu',
	'AUR62033698' => 'cqu',
	'AUR62033757' => 'cqu',
	'AUR62034760' => 'cqu',
	'AUR62034860' => 'cqu',
	'AUR62035179' => 'cqu',
	'AUR62035881' => 'cqu',
	'AUR62036824' => 'cqu',
	'AUR62036876' => 'cqu',
	'AUR62037319' => 'cqu',
	'AUR62037362' => 'cqu',
	'AUR62037541' => 'cqu',
	'AUR62037853' => 'cqu',
	'AUR62038299' => 'cqu',
	'AUR62038563' => 'cqu',
	'AUR62038564' => 'cqu',
	'AUR62038594' => 'cqu',
	'AUR62038792' => 'cqu',
	'AUR62038947' => 'cqu',
	'AUR62039030' => 'cqu',
	'AUR62039231' => 'cqu',
	'AUR62039452' => 'cqu',
	'AUR62040334' => 'cqu',
	'AUR62040869' => 'cqu',
	'AUR62040870' => 'cqu',
	'AUR62040916' => 'cqu',
	'AUR62041199' => 'cqu',
	'AUR62041334' => 'cqu',
	'AUR62041608' => 'cqu',
	'AUR62041609' => 'cqu',
	'AUR62041833' => 'cqu',
	'AUR62041834' => 'cqu',
	'AUR62042054' => 'cqu',
	'AUR62042134' => 'cqu',
	'AUR62042236' => 'cqu',
	'AUR62042281' => 'cqu',
	'AUR62042593' => 'cqu',
	'AUR62042653' => 'cqu',
	'AUR62043025' => 'cqu',
	'AUR62043026' => 'cqu',
	'AUR62043063' => 'cqu',
	'AUR62043091' => 'cqu',
	'AUR62043320' => 'cqu',
	'BolC5t32558H' => 'bol',
	'CAN.G1036.12' => 'can',
	'CAN.G1432.23' => 'can',
	'CAN.G159.19' => 'can',
	'CAN.G4114.1' => 'can',
	'CAN.G492.85' => 'can',
	'CAN.G500.95' => 'can',
	'CAN.G93.31' => 'can',
	'CiPaw.04G054900' => 'cil',
	'CiPaw.05G045400' => 'cil',
	'CiPaw.15G094100' => 'cil',
	'ClCG00G000700' => 'cla',
	'ClCG00G000780' => 'cla',
	'ClCG01G012280' => 'cla',
	'ClCG02G006140' => 'cla',
	'ClCG02G009810' => 'cla',
	'ClCG03G010170' => 'cla',
	'ClCG03G010260' => 'cla',
	'ClCG04G000770' => 'cla',
	'ClCG05G013980' => 'cla',
	'ClCG06G009110' => 'cla',
	'ClCG06G009120' => 'cla',
	'ClCG08G002190' => 'cla',
	'ClCG09G013830' => 'cla',
	'ClCG10G006760' => 'cla',
	'ClCG11G007310' => 'cla',
	'COL.COLO4_16141' => 'col',
	'Cpa.g.sc202.2' => 'cpa',
	'Cpa.g.sc76.18' => 'cpa',
	'CsaV3_1G031080' => 'csa',
	'CsaV3_4G011870' => 'csa',
	'CsaV3_4G014860' => 'csa',
	'CsaV3_4G021860' => 'csa',
	'CsaV3_6G009880' => 'csa',
	'CsaV3_7G021240' => 'csa',
	'CsaV3_UNG240600' => 'csa',
	'CSS0003516' => 'camsi',
	'CSS0013023' => 'camsi',
	'CSS0017680' => 'camsi',
	'CSS0018551' => 'camsi',
	'CSS0026792' => 'camsi',
	'CSS0028271' => 'camsi',
	'CSS0033603' => 'camsi',
	'CSS0040789' => 'camsi',
	'CSS0045068' => 'camsi',
	'CSS0045803' => 'camsi',
	'Dinv10528' => 'din',
	'Duzib116G0875' => 'dzi',
	'Duzib128G0055' => 'dzi',
	'EL10Ac1g02377' => 'bvu',
	'EL10Ac1g02378' => 'bvu',
	'EL10Ac2g03486' => 'bvu',
	'EL10Ac2g03487' => 'bvu',
	'EL10Ac3g05722' => 'bvu',
	'EL10Ac3g06186' => 'bvu',
	'EL10Ac5g11258' => 'bvu',
	'EL10Ac6g13831' => 'bvu',
	'EL10Ac6g14162' => 'bvu',
	'EL10Ac6g14316' => 'bvu',
	'EL10Ac6g14317' => 'bvu',
	'EL10Ac6g14588' => 'bvu',
	'EL10Ac7g16302' => 'bvu',
	'EL10Ac7g16543' => 'bvu',
	'EL10Ac8g18762' => 'bvu',
	'EL10Ac9g20847' => 'bvu',
	'EL10As7g23731' => 'bvu',
	'EL10As7g23732' => 'bvu',
	'FvH4_1g23713' => 'fve',
	'FvH4_2g00261' => 'fve',
	'FvH4_2g00262' => 'fve',
	'FvH4_2g15681' => 'fve',
	'FvH4_2g17851' => 'fve',
	'FvH4_3g10531' => 'fve',
	'FvH4_3g33536' => 'fve',
	'FvH4_4g03471' => 'fve',
	'FvH4_4g19351' => 'fve',
	'FvH4_4g34281' => 'fve',
	'FvH4_5g03811' => 'fve',
	'FvH4_5g03812' => 'fve',
	'FvH4_5g11822' => 'fve',
	'FvH4_5g31701' => 'fve',
	'FvH4_6g12161' => 'fve',
	'FvH4_6g15222' => 'fve',
	'FvH4_6g15223' => 'fve',
	'FvH4_6g19301' => 'fve',
	'FvH4_6g33011' => 'fve',
	'FvH4_6g50161' => 'fve',
	'FvH4_7g04123' => 'fve',
	'FvH4_c7g00010' => 'fve',
	'Gorai.012G165300' => 'gra',
	'HanXRQChr00c0452g0574871' => 'han',
	'HanXRQChr01g0029471' => 'han',
	'HanXRQChr05g0133501' => 'han',
	'HanXRQChr10g0280141' => 'han',
	'HanXRQChr10g0280631' => 'han',
	'HanXRQChr13g0409991' => 'han',
	'HanXRQChr15g0468361' => 'han',
	'Hma1.2p1_0021F.1_g014270' => 'hma',
	'Hma1.2p1_0026F.1_g016730' => 'hma',
	'Hma1.2p1_0177F.1_g077930' => 'hma',
	'Hma1.2p1_0370F.1_g137540' => 'hma',
	'Hma1.2p1_0637F.1_g193600' => 'hma',
	'Hma1.2p1_1045F.1_g251360' => 'hma',
	'Hma1.2p1_1168F.1_g263120' => 'hma',
	'Hma1.2p1_1640F.1_g295040' => 'hma',
	'Hma1.2p1_2467F.1_g322660' => 'hma',
	'Hund01785' => 'sun',
	'Hund04739' => 'sun',
	'Hund07717' => 'sun',
	'Hund08060' => 'sun',
	'Hund08734' => 'sun',
	'Hund10876' => 'sun',
	'Hund14991' => 'sun',
	'Hund15051' => 'sun',
	'Hund15082' => 'sun',
	'Hund17998' => 'sun',
	'Hund18526' => 'sun',
	'Hund19828' => 'sun',
	'Hund23384' => 'sun',
	'Hund26399' => 'sun',
	'Hund28766' => 'sun',
	'Hund28768' => 'sun',
	'Lj1A487G33' => 'lonja',
	'Lj1A487G34' => 'lonja',
	'Lj1A489G15' => 'lonja',
	'Lj1C1113T3' => 'lonja',
	'Lj1C3T4' => 'lonja',
	'Lj1C763G4' => 'lonja',
	'Lj1P195T27' => 'lonja',
	'Lj1P573T13' => 'lonja',
	'Lj1P895T45' => 'lonja',
	'Lj1P995G28' => 'lonja',
	'Lj2A1125G46' => 'lonja',
	'Lj2C116T7' => 'lonja',
	'Lj2P295T30' => 'lonja',
	'Lj2P476T23' => 'lonja',
	'Lj2P603T27' => 'lonja',
	'Lj2P609T17' => 'lonja',
	'Lj2P727T24' => 'lonja',
	'Lj3C273T2' => 'lonja',
	'Lj3C644G3' => 'lonja',
	'Lj3C644G4' => 'lonja',
	'Lj3P463T4' => 'lonja',
	'Lj3P545T31' => 'lonja',
	'Lj3P820T55' => 'lonja',
	'Lj4C260T12' => 'lonja',
	'Lj4C714G8' => 'lonja',
	'Lj4P131T14' => 'lonja',
	'Lj4P131T15' => 'lonja',
	'Lj5C102G24' => 'lonja',
	'Lj5P491T3' => 'lonja',
	'Lj5P564T12' => 'lonja',
	'Lj5P786T11' => 'lonja',
	'Lj6C97T3' => 'lonja',
	'Lj8P523T19' => 'lonja',
	'Lj9A24G30' => 'lonja',
	'Lj9A424G33' => 'lonja',
	'Lj9C219G10' => 'lonja',
	'Lj9P219T12' => 'lonja',
	'Lj9P705T22' => 'lonja',
	'Lju114C4T7' => 'lonja',
	'Lju1220C5G5' => 'lonja',
	'Lju2092C1G1' => 'lonja',
	'Lju2092C1T0' => 'lonja',
	'Lju225C6G6' => 'lonja',
	'Lju427C2T0' => 'lonja',
	'Lju50C9T4' => 'lonja',
	'Lju926C12T2' => 'lonja',
	'Manes.06G126602' => 'mes',
	'Manes.13G002614' => 'mes',
	'Manes.15G192966' => 'mes',
	'Manes.17G001483' => 'mes',
	'Manes.17G022547' => 'mes',
	'Manes.18G042825' => 'mes',
	'Manes.S026816' => 'mes',
	'Manes.S027416' => 'mes',
	'MBI02_g15234_MAGBIO' => 'mbi',
	'MBI16_g35584_MAGBIO' => 'mbi',
	'MELO3C008948.2' => 'cme',
	'MELO3C010395.2' => 'cme',
	'MELO3C010396.2' => 'cme',
	'MELO3C015759.2' => 'cme',
	'MELO3C022607.2' => 'cme',
	'MELO3C028897.2' => 'cme',
	'Oeu000188.1' => 'oeu',
	'Oeu002226.1' => 'oeu',
	'Oeu003087.1' => 'oeu',
	'Oeu003392.1' => 'oeu',
	'Oeu003523.1' => 'oeu',
	'Oeu003524.1' => 'oeu',
	'Oeu003528.1' => 'oeu',
	'Oeu003547.2' => 'oeu',
	'Oeu004677.1' => 'oeu',
	'Oeu005362.1' => 'oeu',
	'Oeu005833.1' => 'oeu',
	'Oeu005834.1' => 'oeu',
	'Oeu006751.1' => 'oeu',
	'Oeu007084.1' => 'oeu',
	'Oeu007264.1' => 'oeu',
	'Oeu008153.1' => 'oeu',
	'Oeu008228.1' => 'oeu',
	'Oeu008229.1' => 'oeu',
	'Oeu009580.1' => 'oeu',
	'Oeu010110.1' => 'oeu',
	'Oeu011704.1' => 'oeu',
	'Oeu011912.1' => 'oeu',
	'Oeu012057.1' => 'oeu',
	'Oeu012157.1' => 'oeu',
	'Oeu013775.1' => 'oeu',
	'Oeu013806.1' => 'oeu',
	'Oeu016457.1' => 'oeu',
	'Oeu016803.1' => 'oeu',
	'Oeu017243.2' => 'oeu',
	'Oeu017935.1' => 'oeu',
	'Oeu020246.2' => 'oeu',
	'Oeu020990.1' => 'oeu',
	'Oeu021941.1' => 'oeu',
	'Oeu021986.1' => 'oeu',
	'Oeu023578.1' => 'oeu',
	'Oeu024242.1' => 'oeu',
	'Oeu025087.1' => 'oeu',
	'Oeu025093.1' => 'oeu',
	'Oeu025412.1' => 'oeu',
	'Oeu025520.1' => 'oeu',
	'Oeu026473.1' => 'oeu',
	'Oeu027505.1' => 'oeu',
	'Oeu027530.1' => 'oeu',
	'Oeu027794.2' => 'oeu',
	'Oeu028951.1' => 'oeu',
	'Oeu029141.1' => 'oeu',
	'Oeu029231.4' => 'oeu',
	'Oeu029388.1' => 'oeu',
	'Oeu029673.1' => 'oeu',
	'Oeu029674.1' => 'oeu',
	'Oeu029748.1' => 'oeu',
	'Oeu030224.1' => 'oeu',
	'Oeu030243.1' => 'oeu',
	'Oeu030253.1' => 'oeu',
	'Oeu030414.1' => 'oeu',
	'Oeu030415.1' => 'oeu',
	'Oeu030472.1' => 'oeu',
	'Oeu031432.1' => 'oeu',
	'Oeu031697.1' => 'oeu',
	'Oeu032030.1' => 'oeu',
	'Oeu032031.1' => 'oeu',
	'Oeu032075.1' => 'oeu',
	'Oeu032737.1' => 'oeu',
	'Oeu033407.1' => 'oeu',
	'Oeu033485.1' => 'oeu',
	'Oeu034465.1' => 'oeu',
	'Oeu034951.1' => 'oeu',
	'Oeu036281.1' => 'oeu',
	'Oeu036931.1' => 'oeu',
	'Oeu036932.1' => 'oeu',
	'Oeu037340.1' => 'oeu',
	'Oeu037611.1' => 'oeu',
	'Oeu039205.1' => 'oeu',
	'Oeu039325.1' => 'oeu',
	'Oeu040999.1' => 'oeu',
	'Oeu041244.1' => 'oeu',
	'Oeu041682.1' => 'oeu',
	'Oeu041863.1' => 'oeu',
	'Oeu042345.1' => 'oeu',
	'Oeu042346.1' => 'oeu',
	'Oeu042671.1' => 'oeu',
	'Oeu043273.1' => 'oeu',
	'Oeu043573.1' => 'oeu',
	'Oeu044071.1' => 'oeu',
	'Oeu046813.1' => 'oeu',
	'Oeu048160.1' => 'oeu',
	'Oeu048162.1' => 'oeu',
	'Oeu048282.1' => 'oeu',
	'Oeu048297.1' => 'oeu',
	'Oeu048360.1' => 'oeu',
	'Oeu048565.1' => 'oeu',
	'Oeu049268.1' => 'oeu',
	'Oeu049465.1' => 'oeu',
	'Oeu049978.1' => 'oeu',
	'Oeu050628.1' => 'oeu',
	'Oeu050727.1' => 'oeu',
	'Oeu052065.1' => 'oeu',
	'Oeu052582.1' => 'oeu',
	'Oeu053090.1' => 'oeu',
	'Oeu053644.1' => 'oeu',
	'Oeu053713.1' => 'oeu',
	'Oeu055027.1' => 'oeu',
	'Oeu057741.1' => 'oeu',
	'Oeu058973.1' => 'oeu',
	'Oeu060366.1' => 'oeu',
	'Oeu061428.1' => 'oeu',
	'Oeu062087.1' => 'oeu',
	'Oeu062537.1' => 'oeu',
	'Oeu062538.1' => 'oeu',
	'Oeu064387.1' => 'oeu',
	'PGSC0003DMG400002344' => 'stu',
	'PGSC0003DMG400004046' => 'stu',
	'PGSC0003DMG400006418' => 'stu',
	'PGSC0003DMG400008410' => 'stu',
	'PGSC0003DMG400008620' => 'stu',
	'PGSC0003DMG400009504' => 'stu',
	'PGSC0003DMG400009845' => 'stu',
	'PGSC0003DMG400011177' => 'stu',
	'PGSC0003DMG400011629' => 'stu',
	'PGSC0003DMG400013586' => 'stu',
	'PGSC0003DMG400013599' => 'stu',
	'PGSC0003DMG400014534' => 'stu',
	'PGSC0003DMG400016055' => 'stu',
	'PGSC0003DMG400016736' => 'stu',
	'PGSC0003DMG400016866' => 'stu',
	'PGSC0003DMG400017701' => 'stu',
	'PGSC0003DMG400018448' => 'stu',
	'PGSC0003DMG400020751' => 'stu',
	'PGSC0003DMG400021088' => 'stu',
	'PGSC0003DMG400021387' => 'stu',
	'PGSC0003DMG400021640' => 'stu',
	'PGSC0003DMG400021704' => 'stu',
	'PGSC0003DMG400022155' => 'stu',
	'PGSC0003DMG400023544' => 'stu',
	'PGSC0003DMG400023564' => 'stu',
	'PGSC0003DMG400028558' => 'stu',
	'PGSC0003DMG400028618' => 'stu',
	'PGSC0003DMG400029149' => 'stu',
	'PGSC0003DMG400029979' => 'stu',
	'PGSC0003DMG400030069' => 'stu',
	'PGSC0003DMG400031272' => 'stu',
	'PGSC0003DMG400034656' => 'stu',
	'PGSC0003DMG400035151' => 'stu',
	'PGSC0003DMG400035741' => 'stu',
	'PGSC0003DMG400036100' => 'stu',
	'PGSC0003DMG400037683' => 'stu',
	'PGSC0003DMG400038046' => 'stu',
	'PGSC0003DMG400040121' => 'stu',
	'PGSC0003DMG400042113' => 'stu',
	'PGSC0003DMG400042218' => 'stu',
	'PGSC0003DMG400044188' => 'stu',
	'PGSC0003DMG400044323' => 'stu',
	'PGSC0003DMG400045014' => 'stu',
	'PGSC0003DMG400045177' => 'stu',
	'PGSC0003DMG400047199' => 'stu',
	'Potri.017G071366' => 'ptr',
	'RcHm_v2.0_Chr2g0137481' => 'rch',
	'Sc20g0003180' => 'sci',
	'SEGI_00305' => 'sgi',
	'SEGI_02246' => 'sgi',
	'SEGI_03696' => 'sgi',
	'SEGI_05490' => 'sgi',
	'SEGI_05682' => 'sgi',
	'SEGI_05900' => 'sgi',
	'SEGI_06517' => 'sgi',
	'SEGI_12587' => 'sgi',
	'SEGI_13129' => 'sgi',
	'SEGI_16935' => 'sgi',
	'SEGI_18008' => 'sgi',
	'SEGI_18224' => 'sgi',
	'SEGI_20188' => 'sgi',
	'SEGI_20772' => 'sgi',
	'SEGI_20842' => 'sgi',
	'SEGI_22270' => 'sgi',
	'SEGI_22705' => 'sgi',
	'SEGI_23638' => 'sgi',
	'SEGI_23928' => 'sgi',
	'SEGI_24790' => 'sgi',
	'SEGI_28421' => 'sgi',
	'SEGI_28832' => 'sgi',
	'SEGI_29884' => 'sgi',
	'SEGI_30829' => 'sgi',
	'SEGI_35046' => 'sgi',
	'SEGI_35582' => 'sgi',
	'SEGI_37882' => 'sgi',
	'SEGI_39680' => 'sgi',
	'SEGI_40069' => 'sgi',
	'SEGI_40087' => 'sgi',
	'SEGI_41606' => 'sgi',
	'SGA_v2.0_scaffold50G18578' => 'sas',
	'SHI00293' => 'shi',
	'SHI00389' => 'shi',
	'SHI00445' => 'shi',
	'SHI01000' => 'shi',
	'SHI01503' => 'shi',
	'SHI01718' => 'shi',
	'SHI03454' => 'shi',
	'SHI03493' => 'shi',
	'SHI03494' => 'shi',
	'SHI03628' => 'shi',
	'SHI04457' => 'shi',
	'SHI04691' => 'shi',
	'SHI04829' => 'shi',
	'SHI05225' => 'shi',
	'SHI06326' => 'shi',
	'SHI06505' => 'shi',
	'SHI06770' => 'shi',
	'SHI07388' => 'shi',
	'SHI07582' => 'shi',
	'SHI07583' => 'shi',
	'SHI08271' => 'shi',
	'SHI10619' => 'shi',
	'SHI10892' => 'shi',
	'SHI10910' => 'shi',
	'SHI10911' => 'shi',
	'SHI14326' => 'shi',
	'SHI14681' => 'shi',
	'SHI15017' => 'shi',
	'SHI15096' => 'shi',
	'SHI15120' => 'shi',
	'SHI15274' => 'shi',
	'SHI16232' => 'shi',
	'SHI16811' => 'shi',
	'SHI17386' => 'shi',
	'SHI17926' => 'shi',
	'SHI18293' => 'shi',
	'SHI20489' => 'shi',
	'SHI20658' => 'shi',
	'SHI20663' => 'shi',
	'SHI21566' => 'shi',
	'SHI22547' => 'shi',
	'SHI22708' => 'shi',
	'SHI22709' => 'shi',
	'SHI22878' => 'shi',
	'SHI22879' => 'shi',
	'SHI23024' => 'shi',
	'SHI25053' => 'shi',
	'SHI25076' => 'shi',
	'SHI25116' => 'shi',
	'SHI25381' => 'shi',
	'SHI25535' => 'shi',
	'SHI25740' => 'shi',
	'SHI25991' => 'shi',
	'SHI26344' => 'shi',
	'SHI26345' => 'shi',
	'SHI27097' => 'shi',
	'SHI27140' => 'shi',
	'SHI27178' => 'shi',
	'SHI27207' => 'shi',
	'SHI27225' => 'shi',
	'SHI27734' => 'shi',
	'SHI27806' => 'shi',
	'SHI28576' => 'shi',
	'SHI29081' => 'shi',
	'SHI30038' => 'shi',
	'SHI30394' => 'shi',
	'SHI30652' => 'shi',
	'SHI32154' => 'shi',
	'SHI32205' => 'shi',
	'SHI32365' => 'shi',
	'SHI32439' => 'shi',
	'SHI32505' => 'shi',
	'SHI32626' => 'shi',
	'SHI32714' => 'shi',
	'SHI32715' => 'shi',
	'SHI32716' => 'shi',
	'SHI33118' => 'shi',
	'SHI33318' => 'shi',
	'SHI33373' => 'shi',
	'SHI33512' => 'shi',
	'SHI33625' => 'shi',
	'SHI34327' => 'shi',
	'SHI35604' => 'shi',
	'SHI36119' => 'shi',
	'SHI36120' => 'shi',
	'SHI44959' => 'shi',
	'SHI46406' => 'shi',
	'SHI48191' => 'shi',
	'SHI48192' => 'shi',
	'Solyc10g150111.1' => 'sly',
	'Solyc12g062340.2' => 'sly',
	'Sopen00g001750' => 'spe',
	'Sopen00g001820' => 'spe',
	'Sopen00g001830' => 'spe',
	'Sopen00g001890' => 'spe',
	'Sopen00g002240' => 'spe',
	'Sopen00g003950' => 'spe',
	'Sopen00g004130' => 'spe',
	'Sopen00g004810' => 'spe',
	'Sopen00g005120' => 'spe',
	'Sopen00g005190' => 'spe',
	'Sopen00g007000' => 'spe',
	'Sopen00g007210' => 'spe',
	'Sopen00g012840' => 'spe',
	'Sopen00g013060' => 'spe',
	'Sopen00g013610' => 'spe',
	'Sopen00g013630' => 'spe',
	'Sopen01g004610' => 'spe',
	'Sopen01g007660' => 'spe',
	'Sopen01g007750' => 'spe',
	'Sopen01g007760' => 'spe',
	'Sopen01g007770' => 'spe',
	'Sopen01g007860' => 'spe',
	'Sopen01g009130' => 'spe',
	'Sopen01g009820' => 'spe',
	'Sopen01g011240' => 'spe',
	'Sopen01g012740' => 'spe',
	'Sopen01g013840' => 'spe',
	'Sopen01g013850' => 'spe',
	'Sopen01g016140' => 'spe',
	'Sopen01g016150' => 'spe',
	'Sopen01g016830' => 'spe',
	'Sopen01g017260' => 'spe',
	'Sopen01g019000' => 'spe',
	'Sopen01g019690' => 'spe',
	'Sopen01g022160' => 'spe',
	'Sopen01g024000' => 'spe',
	'Sopen01g024670' => 'spe',
	'Sopen01g024770' => 'spe',
	'Sopen01g024900' => 'spe',
	'Sopen01g025130' => 'spe',
	'Sopen01g026370' => 'spe',
	'Sopen01g041640' => 'spe',
	'Sopen01g046930' => 'spe',
	'Sopen02g001360' => 'spe',
	'Sopen02g002010' => 'spe',
	'Sopen02g003600' => 'spe',
	'Sopen02g003730' => 'spe',
	'Sopen02g005430' => 'spe',
	'Sopen02g005510' => 'spe',
	'Sopen02g006840' => 'spe',
	'Sopen02g007390' => 'spe',
	'Sopen02g007420' => 'spe',
	'Sopen02g007540' => 'spe',
	'Sopen02g007920' => 'spe',
	'Sopen02g008960' => 'spe',
	'Sopen02g009450' => 'spe',
	'Sopen02g009460' => 'spe',
	'Sopen02g011320' => 'spe',
	'Sopen02g012680' => 'spe',
	'Sopen02g018090' => 'spe',
	'Sopen02g022140' => 'spe',
	'Sopen03g010330' => 'spe',
	'Sopen03g013130' => 'spe',
	'Sopen03g013180' => 'spe',
	'Sopen03g013230' => 'spe',
	'Sopen03g014110' => 'spe',
	'Sopen03g015260' => 'spe',
	'Sopen03g015790' => 'spe',
	'Sopen03g018360' => 'spe',
	'Sopen03g024470' => 'spe',
	'Sopen03g026800' => 'spe',
	'Sopen04g003180' => 'spe',
	'Sopen04g008260' => 'spe',
	'Sopen04g010320' => 'spe',
	'Sopen04g011020' => 'spe',
	'Sopen04g011200' => 'spe',
	'Sopen04g011280' => 'spe',
	'Sopen04g021910' => 'spe',
	'Sopen04g023870' => 'spe',
	'Sopen05g009880' => 'spe',
	'Sopen05g011580' => 'spe',
	'Sopen05g012230' => 'spe',
	'Sopen05g012500' => 'spe',
	'Sopen05g012560' => 'spe',
	'Sopen05g012570' => 'spe',
	'Sopen05g012760' => 'spe',
	'Sopen05g013710' => 'spe',
	'Sopen05g015050' => 'spe',
	'Sopen05g026090' => 'spe',
	'Sopen05g028020' => 'spe',
	'Sopen05g028610' => 'spe',
	'Sopen05g029300' => 'spe',
	'Sopen06g005520' => 'spe',
	'Sopen06g006750' => 'spe',
	'Sopen06g008160' => 'spe',
	'Sopen06g009120' => 'spe',
	'Sopen06g013550' => 'spe',
	'Sopen06g015340' => 'spe',
	'Sopen06g018330' => 'spe',
	'Sopen06g021630' => 'spe',
	'Sopen06g021650' => 'spe',
	'Sopen07g006730' => 'spe',
	'Sopen07g008690' => 'spe',
	'Sopen07g008700' => 'spe',
	'Sopen07g008720' => 'spe',
	'Sopen07g008870' => 'spe',
	'Sopen07g009400' => 'spe',
	'Sopen07g009410' => 'spe',
	'Sopen07g009470' => 'spe',
	'Sopen07g009540' => 'spe',
	'Sopen07g011060' => 'spe',
	'Sopen07g011110' => 'spe',
	'Sopen07g011820' => 'spe',
	'Sopen07g013260' => 'spe',
	'Sopen07g014740' => 'spe',
	'Sopen07g015160' => 'spe',
	'Sopen07g015230' => 'spe',
	'Sopen07g016240' => 'spe',
	'Sopen07g017200' => 'spe',
	'Sopen07g017810' => 'spe',
	'Sopen07g019030' => 'spe',
	'Sopen07g020430' => 'spe',
	'Sopen07g021010' => 'spe',
	'Sopen07g021340' => 'spe',
	'Sopen07g022950' => 'spe',
	'Sopen07g027860' => 'spe',
	'Sopen08g007820' => 'spe',
	'Sopen08g009330' => 'spe',
	'Sopen08g012310' => 'spe',
	'Sopen08g012560' => 'spe',
	'Sopen08g014040' => 'spe',
	'Sopen08g014650' => 'spe',
	'Sopen08g017020' => 'spe',
	'Sopen08g018300' => 'spe',
	'Sopen08g020530' => 'spe',
	'Sopen09g008590' => 'spe',
	'Sopen09g008780' => 'spe',
	'Sopen09g011540' => 'spe',
	'Sopen09g011920' => 'spe',
	'Sopen09g014170' => 'spe',
	'Sopen09g016520' => 'spe',
	'Sopen09g021030' => 'spe',
	'Sopen09g023110' => 'spe',
	'Sopen09g024750' => 'spe',
	'Sopen09g025230' => 'spe',
	'Sopen09g025600' => 'spe',
	'Sopen09g034660' => 'spe',
	'Sopen10g006700' => 'spe',
	'Sopen10g009130' => 'spe',
	'Sopen10g009140' => 'spe',
	'Sopen10g009560' => 'spe',
	'Sopen10g010340' => 'spe',
	'Sopen10g011040' => 'spe',
	'Sopen10g013650' => 'spe',
	'Sopen10g014130' => 'spe',
	'Sopen10g014140' => 'spe',
	'Sopen10g014760' => 'spe',
	'Sopen10g015080' => 'spe',
	'Sopen10g015830' => 'spe',
	'Sopen10g018240' => 'spe',
	'Sopen10g018300' => 'spe',
	'Sopen10g018350' => 'spe',
	'Sopen10g018460' => 'spe',
	'Sopen10g018670' => 'spe',
	'Sopen10g019040' => 'spe',
	'Sopen10g019330' => 'spe',
	'Sopen10g019340' => 'spe',
	'Sopen10g019360' => 'spe',
	'Sopen10g019370' => 'spe',
	'Sopen10g020620' => 'spe',
	'Sopen10g021550' => 'spe',
	'Sopen10g022160' => 'spe',
	'Sopen10g023540' => 'spe',
	'Sopen10g023570' => 'spe',
	'Sopen10g023580' => 'spe',
	'Sopen10g023600' => 'spe',
	'Sopen10g023620' => 'spe',
	'Sopen10g023650' => 'spe',
	'Sopen10g024800' => 'spe',
	'Sopen10g026170' => 'spe',
	'Sopen11g007790' => 'spe',
	'Sopen11g010170' => 'spe',
	'Sopen11g010580' => 'spe',
	'Sopen11g013420' => 'spe',
	'Sopen11g016330' => 'spe',
	'Sopen11g017010' => 'spe',
	'Sopen11g018110' => 'spe',
	'Sopen11g018960' => 'spe',
	'Sopen11g019000' => 'spe',
	'Sopen11g019970' => 'spe',
	'Sopen11g020340' => 'spe',
	'Sopen11g020970' => 'spe',
	'Sopen12g008510' => 'spe',
	'Sopen12g008910' => 'spe',
	'Sopen12g009010' => 'spe',
	'Sopen12g009120' => 'spe',
	'Sopen12g009340' => 'spe',
	'Sopen12g009580' => 'spe',
	'Sopen12g010190' => 'spe',
	'Sopen12g010320' => 'spe',
	'Sopen12g010370' => 'spe',
	'Sopen12g012140' => 'spe',
	'Sopen12g012700' => 'spe',
	'Sopen12g013490' => 'spe',
	'Sopen12g014290' => 'spe',
	'Sopen12g015060' => 'spe',
	'Sopen12g015610' => 'spe',
	'Sopen12g018380' => 'spe',
	'Sopen12g019150' => 'spe',
	'Sopen12g020560' => 'spe',
	'Sopen12g023320' => 'spe',
	'Sp3g24190' => 'spa',
	'Sp4g07270' => 'spa',
	'Sp4g07530' => 'spa',
	'Sp4g07670' => 'spa',
	'Sp6g09360' => 'spa',
	'Sp7g04180' => 'spa',
	'Sp7g04980' => 'spa',
	'Sp7g08200' => 'spa',
	'Sp7g09660' => 'spa',
	'SpUn0081_0010' => 'spa',
	'THA.LOC104803417' => 'tha',
	'THA.LOC104817059' => 'tha',
	'Thecc.01G188700' => 'tca',
	'Thecc.05G106700' => 'tca',
	'Thecc.06G068800' => 'tca',
	'Thecc.07G189100' => 'tca',
	'Thecc.09G172800' => 'tca',
	'Thhalv10023044m.g' => 'esa',
	'Thhalv10023881m.g' => 'esa',
	'Thhalv10024067m.g' => 'esa'
)
$gf_id = 'HOM05D000691'
$gf_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$gf_types_configuration = array(
	'HOMFAM' => array(
		'order' => '1',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	),
	'ORTHOFAM' => array(
		'order' => '2',
		'show_parentless_subfamilies' => 'false',
		'show_table' => 'true',
		'show_orphan' => false
	)
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$allow_async_use = true
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D000691'
)
$data_identifier = 'HOM05D000691'
$data_type = 'gf_id'
$species_gene_counts = array(
	'amhyb' => (int) 18,
	'aly' => (int) 1,
	'atr' => (int) 21,
	'acertr' => (int) 1,
	'cqu' => (int) 90,
	'bol' => (int) 1,
	'can' => (int) 7,
	'cil' => (int) 3,
	'cla' => (int) 15,
	'col' => (int) 1,
	'cpa' => (int) 2,
	'csa' => (int) 7,
	'camsi' => (int) 10,
	'din' => (int) 1,
	'dzi' => (int) 2,
	'bvu' => (int) 18,
	'fve' => (int) 22,
	'gra' => (int) 1,
	'han' => (int) 7,
	'hma' => (int) 9,
	'sun' => (int) 16,
	'lonja' => (int) 46,
	'mes' => (int) 8,
	'mbi' => (int) 2,
	'cme' => (int) 6,
	'oeu' => (int) 110,
	'stu' => (int) 45,
	'ptr' => (int) 1,
	'rch' => (int) 1,
	'sci' => (int) 1,
	'sgi' => (int) 31,
	'sas' => (int) 1,
	'shi' => (int) 89,
	'sly' => (int) 2,
	'spe' => (int) 211,
	'spa' => (int) 10,
	'tha' => (int) 2,
	'tca' => (int) 5,
	'esa' => (int) 3
)
$gf_gene_species = 'esa'
$gf_gene_id = 'Thhalv10024067m.g'
$species_info = array(
	'species' => 'spe',
	'common_name' => 'Solanum pennellii',
	'tax_id' => '28526',
	'version' => 'V2.0'
)
$local_species = 'spe'
$disabled = ''
$selected = ''
$num_hits = (int) 1
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::_renderElement() - CORE/Cake/View/View.php, line 1224
View::element() - CORE/Cake/View/View.php, line 418
include - APP/View/Analysis/custom_tree_creation.ctp, line 27
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933