Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro23515 Vaccinium macrocarpon HOM05D006869 ORTHO05D008641 3.7e-64 248.1 127 100.0
vmacro14155 Vaccinium macrocarpon HOM05D006869 ORTHO05D008641 1.9e-23 112.8 121 57.0
Rhsim07G0123600 Rhododendron simsii HOM05D006869 ORTHO05D008641 3.4e-17 92.0 47 95.7
TAR375G0341 Trochodendron aralioides HOM05D006869 ORTHO05D008641 1.9e-12 76.3 44 81.8
TPR.G26622 Trifolium pratense HOM05D006869 ORTHO05D008641 2.5e-12 75.9 46 76.1
Lj3g0015338 Lotus japonicus HOM05D006869 ORTHO05D008641 5.7e-12 74.7 46 76.1
Phvul.005G061500 Phaseolus vulgaris HOM05D006869 ORTHO05D008641 5.7e-12 74.7 46 76.1
Medtr2g071640 Medicago truncatula HOM05D006869 ORTHO05D008641 7.4e-12 74.3 46 71.7
arahy.Tifrunner.gnm1.ann1.4F5UFQ Arachis hypogaea HOM05D006869 ORTHO05D008641 9.7e-12 73.9 46 73.9
arahy.Tifrunner.gnm1.ann1.TLF144 Arachis hypogaea HOM05D006869 ORTHO05D008641 9.7e-12 73.9 46 73.9
arahy.Tifrunner.gnm1.ann1.U4TMK5 Arachis hypogaea HOM05D006869 ORTHO05D008641 9.7e-12 73.9 46 73.9
Ca_03396_v3 Cicer arietinum L. HOM05D006869 ORTHO05D008641 9.7e-12 73.9 46 73.9
Actinidia09229 Actinidia chinensis HOM05D002067 ORTHO05D002244 1.3e-11 73.6 44 81.8
Glyma.13G259900 Glycine max HOM05D006869 ORTHO05D008641 1.3e-11 73.6 46 73.9
Cpa.g.sc6.427 Carica papaya HOM05D006869 ORTHO05D008641 1.7e-11 73.2 47 76.6
Haze_08288 Corylus avellana HOM05D006869 ORTHO05D008641 1.7e-11 73.2 43 81.4
Hma1.2p1_0414F.1_g147870 Hydrangea macrophylla HOM05D006869 ORTHO05D008641 1.7e-11 73.2 44 77.3
Dinv28924 Davidia involucrata HOM05D002067 ORTHO05D002244 2.2e-11 72.8 43 81.4
PSO675G8621 Papaver somniferum HOM05D006869 ORTHO05D008641 2.2e-11 72.8 44 75.0
PSO732G0001 Papaver somniferum HOM05D006869 ORTHO05D008641 2.2e-11 72.8 44 75.0
Manes.15G174500 Manihot esculenta HOM05D006869 ORTHO05D008641 2.8e-11 72.4 47 72.3
TWI15G0987 Tripterygium wilfordii HOM05D006869 ORTHO05D008641 2.8e-11 72.4 47 74.5
Actinidia14827 Actinidia chinensis HOM05D006869 ORTHO05D008641 3.7e-11 72.0 44 79.5
Potri.001G145500 Populus trichocarpa HOM05D006869 ORTHO05D008641 3.7e-11 72.0 44 77.3
Atru.chr6.1763 Acer truncatum HOM05D006869 ORTHO05D008641 4.8e-11 71.6 44 77.3
SGA_v2.0_scaffold94G28479 Striga asiatica HOM05D006869 ORTHO05D008641 4.8e-11 71.6 52 67.3
Lalb_Chr25g0285441 Lupinus albus HOM05D006869 ORTHO05D008641 6.3e-11 71.2 46 76.1
PSO832G0919 Papaver somniferum HOM05D006869 ORTHO05D008641 6.3e-11 71.2 44 72.7
CSS0028384 Camellia sinensis var. sinensis HOM05D006869 ORTHO05D008641 8.2e-11 70.9 44 77.3
CSS0030709 Camellia sinensis var. sinensis HOM05D006869 ORTHO05D008641 8.2e-11 70.9 44 77.3
DCAR_005606 Daucus carota HOM05D006869 ORTHO05D008641 8.2e-11 70.9 42 76.2
HanXRQChr08g0227941 Helianthus annuus HOM05D006869 ORTHO05D008641 8.2e-11 70.9 44 77.3
Lsat_1_v5_gn_6_67180 Lactuca sativa HOM05D006869 ORTHO05D008641 8.2e-11 70.9 41 80.5
Peaxi162Scf00497g00098 Petunia axillaris HOM05D006869 ORTHO05D008641 1.1e-10 70.5 44 75.0
Sopen06g021250 Solanum pennellii HOM05D006869 ORTHO05D008641 1.1e-10 70.5 44 75.0
PGSC0003DMG400026597 Solanum tuberosum HOM05D006869 ORTHO05D008641 1.1e-10 70.5 44 75.0
Ciclev10033051m.g Citrus clementina HOM05D006869 ORTHO05D008641 1.4e-10 70.1 44 75.0
COL.COLO4_17099 Corchorus olitorius HOM05D006869 ORTHO05D008641 1.4e-10 70.1 44 75.0
Glyma.15G248100 Glycine max HOM05D006869 ORTHO05D008641 1.4e-10 70.1 49 67.3
CiPaw.11G089700 Carya illinoinensis HOM05D006869 ORTHO05D008641 1.8e-10 69.7 46 73.9
VMungo1080G1596 Vigna mungo HOM05D006869 ORTHO05D008641 1.8e-10 69.7 46 69.6
GSVIVG01013242001 Vitis vinifera HOM05D006869 ORTHO05D008641 1.8e-10 69.7 41 80.5
ECA233G4479 Erigeron canadensis HOM05D006869 ORTHO05D008641 3.1e-10 68.9 44 75.0
FAN04G2266 Fragaria x ananassa HOM05D006869 ORTHO05D008641 3.1e-10 68.9 71 54.9
FAN08G2623 Fragaria x ananassa HOM05D006869 ORTHO05D008641 3.1e-10 68.9 71 54.9
FAN13G1368 Fragaria x ananassa HOM05D006869 ORTHO05D008641 3.1e-10 68.9 71 54.9
MD06G1029000 Malus domestica HOM05D006869 ORTHO05D008641 3.1e-10 68.9 44 75.0
ATR0049G078 Amborella trichopoda HOM05D006869 ORTHO05D008641 6.9e-10 67.8 42 78.6
Aqoxy3G02480 Aquilegia oxysepala HOM05D006869 ORTHO05D008641 6.9e-10 67.8 43 72.1
Cc08_g02310 Coffea canephora HOM05D006869 ORTHO05D008641 9.1e-10 67.4 44 72.7
Migut.D00490 Erythranthe guttata HOM05D006869 ORTHO05D008641 9.1e-10 67.4 41 78.0
FAN18G0870 Fragaria x ananassa HOM05D006869 ORTHO05D008641 9.1e-10 67.4 71 53.5
RcHm_v2.0_Chr7g0208861 Rosa chinensis HOM05D006869 ORTHO05D008641 9.1e-10 67.4 46 69.6
Sabra01G0114100 Salix brachista HOM05D006869 ORTHO05D008641 1.2e-09 67.0 41 75.6
Gohir.A09G198300 Gossypium hirsutum HOM05D006869 ORTHO05D008641 1.5e-09 66.6 44 72.7
Nn1g00590 Nelumbo nucifera HOM05D006869 ORTHO05D008641 1.5e-09 66.6 44 70.5
Thecc.03G232900 Theobroma cacao HOM05D006869 ORTHO05D008641 1.5e-09 66.6 44 75.0
Duzib205G1446 Durio zibethinus HOM05D006869 ORTHO05D008641 2.0e-09 66.2 44 72.7
Prupe.5G042800 Prunus persica HOM05D006869 ORTHO05D008641 2.0e-09 66.2 44 68.2
Sc22g0001440 Simmondsia chinensis HOM05D006869 ORTHO05D008641 2.0e-09 66.2 43 69.8
MSTRG.17527 Avicennia marina HOM05D006869 ORTHO05D008641 2.6e-09 65.9 41 75.6
CiPaw.12G061200 Carya illinoinensis HOM05D006869 ORTHO05D008641 2.6e-09 65.9 47 68.1
ClCG09G012310 Citrullus lanatus HOM05D006869 ORTHO05D008641 2.6e-09 65.9 57 54.4
CsaV3_1G016990 Cucumis sativus L. HOM05D006869 ORTHO05D008641 2.6e-09 65.9 49 63.3
CsaV3_3G049460 Cucumis sativus L. HOM05D006869 ORTHO05D008641 2.6e-09 65.9 49 63.3
Hund14421 Selenicereus undatus HOM05D006869 ORTHO05D008641 2.6e-09 65.9 43 69.8
Zm00001eb024260 Zea mays HOM05D006869 ORTHO05D008641 2.6e-09 65.9 44 70.5
FvH4_5g21430 Fragaria vesca HOM05D006869 ORTHO05D008641 3.4e-09 65.5 46 67.4
Oeu015441.1 Olea europaea HOM05D006869 ORTHO05D008641 3.4e-09 65.5 41 73.2
EL10Ac5g12174 Beta vulgaris HOM05D006869 ORTHO05D008641 4.5e-09 65.1 44 65.9
DCAR_024975 Daucus carota HOM05D006869 ORTHO05D008641 5.9e-09 64.7 44 68.2
Gohir.D09G192900 Gossypium hirsutum HOM05D006869 ORTHO05D008641 5.9e-09 64.7 44 72.7
PGR042G2539 Punica granatum HOM05D006869 ORTHO05D008641 5.9e-09 64.7 41 68.3
MELO3C003378.2 Cucumis melo HOM05D006869 ORTHO05D008641 7.7e-09 64.3 49 61.2
CANSAT21G0218 Cannabis sativa HOM05D006869 ORTHO05D008641 1.0e-08 63.9 44 65.9
Nitab4.5_0003100g0080 Nicotiana tabacum HOM05D006869 ORTHO05D008641 1.0e-08 63.9 44 65.9
Sed0006536 Sechium edule HOM05D006869 ORTHO05D008641 1.0e-08 63.9 46 63.0
SEGI_28722 Sequoiadendron giganteum HOM05D006869 ORTHO05D008641 1.0e-08 63.9 41 73.2
SalBow6G5905 Salvia bowleyana HOM05D006869 ORTHO05D008641 1.7e-08 63.2 41 70.7
Gorai.006G215800 Gossypium raimondii HOM05D006869 ORTHO05D008641 2.2e-08 62.8 41 75.6
Nitab4.5_0004658g0060 Nicotiana tabacum HOM05D006869 ORTHO05D008641 3.8e-08 62.0 41 68.3
Os02g0279600 Oryza sativa ssp. japonica HOM05D006869 ORTHO05D008641 3.8e-08 62.0 44 68.2
THA.LOC104798593 Tarenaya hassleriana HOM05D006869 ORTHO05D008641 6.5e-08 61.2 43 67.4
THA.LOC104822843 Tarenaya hassleriana HOM05D006869 ORTHO05D008641 6.5e-08 61.2 43 67.4
Ah.07g200090 Amaranthus hybridus HOM05D006869 ORTHO05D008641 8.5e-08 60.8 41 65.9
Thhalv10009100m.g Eutrema salsugineum HOM05D006869 ORTHO05D008641 1.1e-07 60.5 46 65.2
MBI04_g13865_MAGBIO Magnolia biondii HOM05D006869 ORTHO05D008641 1.1e-07 60.5 44 65.9
unitig_746.g26748 Utricularia gibba HOM05D006869 ORTHO05D008641 1.4e-07 60.1 44 61.4
AL1G46570 Arabidopsis lyrata HOM05D006869 ORTHO05D008641 1.9e-07 59.7 46 65.2
AT1G32370 Arabidopsis thaliana HOM05D006869 ORTHO05D008641 1.9e-07 59.7 46 65.2
BcaC05g27275 Brassica carinata HOM05D006869 ORTHO05D008641 2.5e-07 59.3 46 65.2
A09p33790 Brassica napus HOM05D006869 ORTHO05D008641 2.5e-07 59.3 46 65.2
C05p31830 Brassica napus HOM05D006869 ORTHO05D008641 2.5e-07 59.3 46 65.2
BolC5t31911H Brassica oleracea HOM05D006869 ORTHO05D008641 2.5e-07 59.3 46 65.2
BraA09t38929Z Brassica rapa HOM05D006869 ORTHO05D008641 2.5e-07 59.3 46 65.2
THA.LOC104798477 Tarenaya hassleriana HOM05D006869 ORTHO05D008641 3.2e-07 58.9 47 57.4
Aa31LG2G13630 Aethionema arabicum HOM05D006869 ORTHO05D008641 4.2e-07 58.5 44 65.9
BcaB07g32921 Brassica carinata HOM05D006869 ORTHO05D008641 4.2e-07 58.5 46 63.0
Carub.0001s3075 Capsella rubella HOM05D006869 ORTHO05D008641 1.2e-06 57.0 46 60.9
CARHR031750 Cardamine hirsuta HOM05D006869 ORTHO05D008641 1.2e-06 57.0 47 61.7
Eucgr.E00305 Eucalyptus grandis HOM05D006869 ORTHO05D008641 1.6e-06 56.6 44 59.1
Sp1g28510 Schrenkiella parvula HOM05D006869 ORTHO05D008641 1.6e-06 56.6 43 62.8


User provided reference genes

Program Settings