Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro23499 Vaccinium macrocarpon HOM05D002632 ORTHO05D002881 9.3e-71 270.0 129 100.0
Rhsim04G0026300 Rhododendron simsii HOM05D002632 ORTHO05D002881 1.1e-26 123.6 59 94.9
CSS0027550 Camellia sinensis var. sinensis HOM05D002632 ORTHO05D002881 3.3e-23 112.1 59 86.4
CSS0041499 Camellia sinensis var. sinensis HOM05D002632 ORTHO05D002881 3.3e-23 112.1 59 86.4
CSS0040167 Camellia sinensis var. sinensis HOM05D002632 ORTHO05D002881 9.5e-23 110.5 59 84.7
Migut.N00425 Erythranthe guttata HOM05D002632 ORTHO05D002881 3.6e-22 108.6 60 81.7
DCAR_005286 Daucus carota HOM05D002632 ORTHO05D002881 6.1e-22 107.8 60 80.0
Hma1.2p1_0349F.1_g132020 Hydrangea macrophylla HOM05D002632 ORTHO05D002881 1.0e-21 107.1 58 82.8
Lju912C2G13 Lonicera japonica HOM05D002632 ORTHO05D002881 1.0e-21 107.1 58 82.8
SalBow3G2534 Salvia bowleyana HOM05D002632 ORTHO05D002881 3.0e-21 105.5 63 76.2
Nitab4.5_0001574g0120 Nicotiana tabacum HOM05D002632 ORTHO05D002881 4.0e-21 105.1 59 74.6
Ciclev10005461m.g Citrus clementina HOM05D002632 ORTHO05D002881 5.2e-21 104.8 57 80.7
Sabra16G0203600 Salix brachista HOM05D002632 ORTHO05D002881 5.2e-21 104.8 60 78.3
Nitab4.5_0003263g0020 Nicotiana tabacum HOM05D002632 ORTHO05D002881 6.8e-21 104.4 59 76.3
PGR142G2893 Punica granatum HOM05D002632 ORTHO05D002881 6.8e-21 104.4 58 82.8
CAN.G767.18 Capsicum annuum HOM05D002632 ORTHO05D002881 8.9e-21 104.0 59 76.3
Peaxi162Scf00652g00017 Petunia axillaris HOM05D002632 ORTHO05D002881 8.9e-21 104.0 59 76.3
Potri.001G321100 Populus trichocarpa HOM05D002632 ORTHO05D002881 8.9e-21 104.0 60 78.3
Sc13g0000450 Simmondsia chinensis HOM05D002632 ORTHO05D002881 8.9e-21 104.0 57 84.2
TAR365G0766 Trochodendron aralioides HOM05D002632 ORTHO05D002881 8.9e-21 104.0 57 78.9
Cc00_g21630 Coffea canephora HOM05D002632 ORTHO05D002881 1.2e-20 103.6 59 74.6
Sed0003247 Sechium edule HOM05D002632 ORTHO05D002881 1.5e-20 103.2 60 78.3
Lalb_Chr08g0230491 Lupinus albus HOM05D002632 ORTHO05D002881 2.0e-20 102.8 58 79.3
PGSC0003DMG400004663 Solanum tuberosum HOM05D002632 ORTHO05D002881 2.0e-20 102.8 59 74.6
EL10Ac3g07443 Beta vulgaris HOM05D002632 ORTHO05D002881 2.6e-20 102.4 58 74.1
QL06p026917 Quercus lobata HOM05D002632 ORTHO05D002881 2.6e-20 102.4 58 81.0
Hund24429 Selenicereus undatus HOM05D002632 ORTHO05D002881 2.6e-20 102.4 58 79.3
Sopen12g033310 Solanum pennellii HOM05D002632 ORTHO05D002881 2.6e-20 102.4 59 74.6
Dinv27193 Davidia involucrata HOM05D002632 ORTHO05D002881 3.4e-20 102.1 58 79.3
MD04G1018000 Malus domestica HOM05D002632 ORTHO05D002881 3.4e-20 102.1 58 77.6
MSTRG.24611 Avicennia marina HOM05D002632 ORTHO05D002881 4.4e-20 101.7 59 79.7
CiPaw.02G063400 Carya illinoinensis HOM05D002632 ORTHO05D002881 4.4e-20 101.7 58 81.0
CiPaw.02G064000 Carya illinoinensis HOM05D002632 ORTHO05D002881 4.4e-20 101.7 58 81.0
FvH4_4g13200 Fragaria vesca HOM05D002632 ORTHO05D002881 4.4e-20 101.7 58 75.9
FAN07G0477 Fragaria x ananassa HOM05D002632 ORTHO05D002881 4.4e-20 101.7 58 75.9
FAN12G3214 Fragaria x ananassa HOM05D002632 ORTHO05D002881 4.4e-20 101.7 58 75.9
HanXRQChr15g0485811 Helianthus annuus HOM05D002632 ORTHO05D002881 4.4e-20 101.7 58 79.3
RcHm_v2.0_Chr1g0331221 Rosa chinensis HOM05D002632 ORTHO05D002881 4.4e-20 101.7 58 75.9
RcHm_v2.0_Chr4g0413351 Rosa chinensis HOM05D002632 ORTHO05D002881 4.4e-20 101.7 58 75.9
Phvul.001G266000 Phaseolus vulgaris HOM05D002632 ORTHO05D002881 5.7e-20 101.3 60 76.7
VMungo1383G3241 Vigna mungo HOM05D002632 ORTHO05D002881 5.7e-20 101.3 58 77.6
Gohir.A10G129200 Gossypium hirsutum HOM05D002632 ORTHO05D002881 7.5e-20 100.9 58 74.1
Gohir.D10G137000 Gossypium hirsutum HOM05D002632 ORTHO05D002881 7.5e-20 100.9 58 74.1
Gorai.011G152100 Gossypium raimondii HOM05D002632 ORTHO05D002881 7.5e-20 100.9 58 74.1
Nn7g37634 Nelumbo nucifera HOM05D002632 ORTHO05D002881 7.5e-20 100.9 58 77.6
ClCG05G007030 Citrullus lanatus HOM05D002632 ORTHO05D002881 1.3e-19 100.1 60 75.0
GSVIVG01031563001 Vitis vinifera HOM05D002632 ORTHO05D002881 1.3e-19 100.1 56 80.4
Ah.13g077900 Amaranthus hybridus HOM05D002632 ORTHO05D002881 1.7e-19 99.8 58 75.9
Glyma.18G002700 Glycine max HOM05D002632 ORTHO05D002881 1.7e-19 99.8 58 75.9
Actinidia35834 Actinidia chinensis HOM05D002632 ORTHO05D002881 2.2e-19 99.4 54 83.3
Aqoxy7G02857 Aquilegia oxysepala HOM05D002632 ORTHO05D002881 2.2e-19 99.4 58 75.9
CSS0027222 Camellia sinensis var. sinensis HOM05D002632 ORTHO05D002881 2.2e-19 99.4 54 85.2
CANSAT78G1535 Cannabis sativa HOM05D002632 ORTHO05D002881 2.2e-19 99.4 70 65.7
AUR62020873 Chenopodium quinoa HOM05D002632 ORTHO05D002881 2.2e-19 99.4 58 72.4
PSO210G3035 Papaver somniferum HOM05D002632 ORTHO05D002881 2.2e-19 99.4 58 75.9
Psat3g194800 Pisum sativum HOM05D002632 ORTHO05D002881 2.2e-19 99.4 58 77.6
Solyc12g098530.2 Solanum lycopersicum HOM05D002632 ORTHO05D002881 2.9e-19 99.0 59 71.2
TPR.G4308 Trifolium pratense HOM05D002632 ORTHO05D002881 2.9e-19 99.0 58 77.6
AUR62018546 Chenopodium quinoa HOM05D002632 ORTHO05D002881 3.7e-19 98.6 58 72.4
MELO3C006772.2 Cucumis melo HOM05D002632 ORTHO05D002881 3.7e-19 98.6 60 73.3
CsaV3_3G015730 Cucumis sativus L. HOM05D002632 ORTHO05D002881 3.7e-19 98.6 60 73.3
ECA238G4635 Erigeron canadensis HOM05D002632 ORTHO05D002881 3.7e-19 98.6 58 77.6
Eucgr.H00019 Eucalyptus grandis HOM05D002632 ORTHO05D002881 3.7e-19 98.6 58 70.7
MBI18_g03882_MAGBIO Magnolia biondii HOM05D002632 ORTHO05D002881 3.7e-19 98.6 58 74.1
SGA_v2.0_scaffold4G02140 Striga asiatica HOM05D002632 ORTHO05D002881 3.7e-19 98.6 59 74.6
PSO761G0190 Papaver somniferum HOM05D002632 ORTHO05D002881 4.9e-19 98.2 58 74.1
Ca_04111_v3 Cicer arietinum L. HOM05D002632 ORTHO05D002881 6.4e-19 97.8 58 75.9
Medtr7g008030 Medicago truncatula HOM05D002632 ORTHO05D002881 6.4e-19 97.8 58 74.1
Haze_11663 Corylus avellana HOM05D002632 ORTHO05D002881 8.3e-19 97.4 53 86.8
Thecc.04G193800 Theobroma cacao HOM05D002632 ORTHO05D002881 8.3e-19 97.4 58 72.4
HPP92_022938 Vanilla planifolia HOM05D002632 ORTHO05D002881 1.4e-18 96.7 58 75.9
HPP92_022948 Vanilla planifolia HOM05D002632 ORTHO05D002881 1.4e-18 96.7 58 75.9
A04p08130 Brassica napus HOM05D002632 ORTHO05D002881 1.8e-18 96.3 58 72.4
BraA04t16502Z Brassica rapa HOM05D002632 ORTHO05D002881 1.8e-18 96.3 58 72.4
Carub.0007s2843 Capsella rubella HOM05D002632 ORTHO05D002881 5.4e-18 94.7 58 70.7
Lj6g0021538 Lotus japonicus HOM05D002632 ORTHO05D002881 5.4e-18 94.7 57 73.7
THA.LOC104804794 Tarenaya hassleriana HOM05D002632 ORTHO05D002881 5.4e-18 94.7 58 69.0
Aa31LG8G10370 Aethionema arabicum HOM05D002632 ORTHO05D002881 7.0e-18 94.4 58 69.0
arahy.Tifrunner.gnm1.ann1.82GX91 Arachis hypogaea HOM05D002632 ORTHO05D002881 9.2e-18 94.0 58 69.0
arahy.Tifrunner.gnm1.ann1.MV33TH Arachis hypogaea HOM05D002632 ORTHO05D002881 9.2e-18 94.0 58 69.0
Os09g0359900 Oryza sativa ssp. japonica HOM05D002632 ORTHO05D002881 9.2e-18 94.0 58 72.4
Sp7g11800 Schrenkiella parvula HOM05D002632 ORTHO05D002881 9.2e-18 94.0 58 69.0
AL7G42440 Arabidopsis lyrata HOM05D002632 ORTHO05D002881 1.2e-17 93.6 58 70.7
CARHR219970 Cardamine hirsuta HOM05D002632 ORTHO05D002881 1.2e-17 93.6 58 70.7
BcaC02g09371 Brassica carinata HOM05D002632 ORTHO05D002881 1.6e-17 93.2 58 69.0
C04p41810 Brassica napus HOM05D002632 ORTHO05D002881 1.6e-17 93.2 58 69.0
BolC4t25762H Brassica oleracea HOM05D002632 ORTHO05D002881 1.6e-17 93.2 58 69.0
Manes.05G201800 Manihot esculenta HOM05D002632 ORTHO05D002881 1.6e-17 93.2 55 76.4
Aqoxy2G02390 Aquilegia oxysepala HOM05D002632 ORTHO05D002881 2.0e-17 92.8 54 75.9
Lsat_1_v5_gn_2_47660 Lactuca sativa HOM05D002632 ORTHO05D002881 3.5e-17 92.0 62 71.0
Thhalv10025872m.g Eutrema salsugineum HOM05D002632 ORTHO05D002881 4.6e-17 91.7 58 67.2
AT4G14000 Arabidopsis thaliana HOM05D002632 ORTHO05D002881 5.9e-17 91.3 58 67.2
Duzib268G1539 Durio zibethinus HOM05D002632 ORTHO05D002881 7.8e-17 90.9 63 65.1
Zm00001eb098490 Zea mays HOM05D002632 ORTHO05D002881 1.0e-16 90.5 57 73.7
COL.COLO4_05440 Corchorus olitorius HOM05D002632 ORTHO05D002881 1.3e-16 90.1 55 70.9
Prupe.1G166800 Prunus persica HOM05D002632 ORTHO05D002881 1.3e-16 90.1 55 72.7
unitig_744.g24026 Utricularia gibba HOM05D002632 ORTHO05D002881 1.3e-16 90.1 58 67.2
AagrBONN_evm.TU.Sc2ySwM_228.111 Anthoceros agrestis HOM05D002632 ORTHO05D002881 1.7e-16 89.7 57 71.9
Actinidia21266 Actinidia chinensis HOM05D002632 ORTHO05D002881 2.3e-16 89.4 53 77.4
ATR0693G355 Amborella trichopoda HOM05D002632 ORTHO05D002881 2.3e-16 89.4 57 68.4
CDE04G1900 Ceratophyllum demersum HOM05D002632 ORTHO05D002881 1.1e-15 87.0 57 63.2
Pp3c20_16690 Physcomitrium patens HOM05D002632 ORTHO05D002881 1.1e-15 87.0 60 63.3
SEGI_03108 Sequoiadendron giganteum HOM05D002632 ORTHO05D002881 1.1e-15 87.0 57 70.2
Mapoly0002s0255 Marchantia polymorpha HOM05D002632 ORTHO05D002881 4.3e-15 85.1 57 64.9
BcaB02g08641 Brassica carinata HOM05D002632 ORTHO05D002881 9.5e-15 84.0 54 66.7
SMO275G0063 Selaginella moellendorffii HOM05D002632 ORTHO05D002881 1.4e-13 80.1 69 55.1
SMO367G1084 Selaginella moellendorffii HOM05D002632 ORTHO05D002881 1.4e-13 80.1 69 55.1
CiPaw.02G063600 Carya illinoinensis HOM05D002632 ORTHO05D002881 8.9e-13 77.4 52 73.1
Pp3c8_15830 Physcomitrium patens HOM05D002632 ORTHO05D002881 8.9e-13 77.4 59 64.4
SMO361G0483 Selaginella moellendorffii HOM05D002632 ORTHO05D002881 2.0e-12 76.3 57 61.4
Atru.chr4.1554 Acer truncatum HOM05D002632 ORTHO05D002881 7.0e-10 67.8 34 85.3
FAN17G2987 Fragaria x ananassa HOM05D002632 ORTHO05D002881 7.0e-10 67.8 43 69.8
RcHm_v2.0_Chr5g0007081 Rosa chinensis HOM05D002632 ORTHO05D002881 6.0e-09 64.7 34 76.5
Cre08.g378250 Chlamydomonas reinhardtii HOM05D002632 ORTHO05D002881 1.3e-08 63.5 56 53.6
MELO3C032142.2 Cucumis melo HOM05D002632 ORTHO05D167196 8.6e-08 60.8 36 66.7
BcaC02g10143 Brassica carinata HOM05D002632 ORTHO05D000523 1.2e-06 57.0 34 70.6
BcaC04g20715 Brassica carinata HOM05D002632 ORTHO05D002881 1.2e-06 57.0 34 70.6
C05p23580 Brassica napus HOM05D002632 ORTHO05D002881 1.2e-06 57.0 34 70.6
C09p39960 Brassica napus HOM05D002632 ORTHO05D002881 1.2e-06 57.0 34 70.6
BolC9t56892H Brassica oleracea HOM05D002632 ORTHO05D002881 1.2e-06 57.0 34 70.6
CiPaw.02G064200 Carya illinoinensis HOM05D002632 ORTHO05D002881 1.2e-06 57.0 34 76.5
ATR0743G155 Amborella trichopoda HOM05D002632 ORTHO05D002881 2.1e-06 56.2 60 40.0
MBI08_g22656_MAGBIO Magnolia biondii HOM05D002632 ORTHO05D002881 2.1e-06 56.2 60 40.0
arahy.Tifrunner.gnm1.ann1.181MCE Arachis hypogaea HOM05D002632 ORTHO05D002881 2.8e-06 55.8 61 39.3
BcaC02g07189 Brassica carinata HOM05D002632 ORTHO05D002881 2.8e-06 55.8 60 45.0
C04p70350 Brassica napus HOM05D002632 ORTHO05D002881 2.8e-06 55.8 60 45.0
BolC4t28538H Brassica oleracea HOM05D002632 ORTHO05D002881 2.8e-06 55.8 60 45.0
Nn1g09573 Nelumbo nucifera HOM05D002632 ORTHO05D002881 2.8e-06 55.8 60 41.7
Manes.11G119500 Manihot esculenta HOM05D002632 ORTHO05D002881 4.7e-06 55.1 60 41.7
Aa31LG1G25100 Aethionema arabicum HOM05D002632 ORTHO05D002881 6.2e-06 54.7 60 41.7
BcaB01g03394 Brassica carinata HOM05D002632 ORTHO05D002881 6.2e-06 54.7 60 43.3
BcaB06g29302 Brassica carinata HOM05D002632 ORTHO05D002881 6.2e-06 54.7 60 43.3
BcaC01g05242 Brassica carinata HOM05D002632 ORTHO05D002881 6.2e-06 54.7 60 43.3
A03p24180 Brassica napus HOM05D002632 ORTHO05D002881 6.2e-06 54.7 60 43.3
C03p28810 Brassica napus HOM05D002632 ORTHO05D002881 6.2e-06 54.7 60 43.3
BolC3t15240H Brassica oleracea HOM05D002632 ORTHO05D002881 6.2e-06 54.7 60 43.3
BraA03t11627Z Brassica rapa HOM05D002632 ORTHO05D002881 6.2e-06 54.7 60 43.3
BraA04t18729Z Brassica rapa HOM05D002632 ORTHO05D002881 6.2e-06 54.7 60 43.3
FAN22G2005 Fragaria x ananassa HOM05D002632 ORTHO05D002881 6.2e-06 54.7 57 43.9
Sp4g25420 Schrenkiella parvula HOM05D002632 ORTHO05D002881 6.2e-06 54.7 60 40.0
Thhalv10001523m.g Eutrema salsugineum HOM05D002632 ORTHO05D002881 8.1e-06 54.3 60 41.7
SHI06546 Sapria himalayana HOM05D015319 ORTHO05D030572 8.1e-06 54.3 31 74.2
THA.LOC104799618 Tarenaya hassleriana HOM05D002632 ORTHO05D002881 8.1e-06 54.3 60 41.7


User provided reference genes

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