Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro23412 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 0.0e+00 2314.3 1177 100.0
Rhsim06G0121200 Rhododendron simsii HOM05D006994 ORTHO05D008229 0.0e+00 1391.7 1149 66.0
Actinidia32524 Actinidia chinensis HOM05D006994 ORTHO05D008229 1.2e-252 877.5 1232 47.3
CSS0008190 Camellia sinensis var. sinensis HOM05D006994 ORTHO05D008229 1.0e-232 811.2 1016 51.0
Dinv06483 Davidia involucrata HOM05D006994 ORTHO05D008229 1.1e-226 791.2 1276 43.0
vmacro12443 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 4.2e-218 762.7 403 99.8
Dinv12707 Davidia involucrata HOM05D006994 ORTHO05D008229 1.3e-214 751.1 1273 42.4
Actinidia11193 Actinidia chinensis HOM05D006994 ORTHO05D008229 5.2e-184 649.4 1154 41.2
QL08p043727 Quercus lobata HOM05D006994 ORTHO05D008229 4.9e-142 510.0 1321 33.2
GSVIVG01000809001 Vitis vinifera HOM05D006994 ORTHO05D008229 2.5e-130 471.1 1064 35.2
Prupe.3G170300 Prunus persica HOM05D006994 ORTHO05D008229 1.0e-123 449.1 1333 31.4
TAR629G2429 Trochodendron aralioides HOM05D006994 ORTHO05D008229 3.0e-123 447.6 1316 32.1
Thecc.01G159900 Theobroma cacao HOM05D006994 ORTHO05D008229 9.6e-122 442.6 1317 30.3
Lj1A585G38 Lonicera japonica HOM05D006994 ORTHO05D008229 2.1e-116 424.9 1187 34.0
TAR627G0262 Trochodendron aralioides HOM05D006994 ORTHO05D008229 9.0e-112 409.5 999 34.2
Hma1.2p1_0036F.1_g023730 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 3.4e-111 407.5 917 35.0
Cfa022555 Carpinus fangiana HOM05D006994 ORTHO05D008229 4.1e-104 384.0 992 33.1
Duzib187G0002 Durio zibethinus HOM05D006994 ORTHO05D008229 2.2e-102 378.3 1305 30.3
Nn3g20985 Nelumbo nucifera HOM05D006994 ORTHO05D008229 5.1e-99 367.1 1317 29.8
Ciclev10030533m.g Citrus clementina HOM05D006994 ORTHO05D008229 2.8e-97 361.3 1320 29.6
FAN02G4438 Fragaria x ananassa HOM05D006994 ORTHO05D008229 3.7e-97 360.9 1274 29.2
FAN14G2472 Fragaria x ananassa HOM05D006994 ORTHO05D008229 5.3e-96 357.1 1278 29.9
Gorai.006G007500 Gossypium raimondii HOM05D006994 ORTHO05D008229 1.2e-95 355.9 1300 29.2
FvH4_6g37820 Fragaria vesca HOM05D006994 ORTHO05D008229 2.0e-95 355.1 1278 29.8
Gohir.D09G005900 Gossypium hirsutum HOM05D006994 ORTHO05D008229 4.5e-95 354.0 1299 29.3
MD09G1155600 Malus domestica HOM05D006994 ORTHO05D008229 1.7e-94 352.1 1331 29.2
COL.COLO4_33721 Corchorus olitorius HOM05D006994 ORTHO05D008229 8.5e-94 349.7 1039 30.6
Duzib147G0646 Durio zibethinus HOM05D006994 ORTHO05D008229 2.3e-91 341.7 1255 28.9
RcHm_v2.0_Chr2g0150941 Rosa chinensis HOM05D006994 ORTHO05D008229 3.0e-91 341.3 1289 29.0
FAN09G0855 Fragaria x ananassa HOM05D006994 ORTHO05D008229 8.2e-89 333.2 1332 28.5
Nn6g34417 Nelumbo nucifera HOM05D006994 ORTHO05D008229 1.8e-88 332.0 1337 28.9
Cc05_g09220 Coffea canephora HOM05D006994 ORTHO05D008229 4.5e-87 327.4 1240 29.6
Gohir.A09G006700 Gossypium hirsutum HOM05D006994 ORTHO05D008229 3.8e-86 324.3 1108 30.4
CiPaw.03G188200 Carya illinoinensis HOM05D006994 ORTHO05D008229 9.1e-80 303.1 774 32.2
CANSAT64G1952 Cannabis sativa HOM05D006994 ORTHO05D008229 2.6e-79 301.6 1325 27.5
TWI59G0403 Tripterygium wilfordii HOM05D006994 ORTHO05D008229 9.4e-77 293.1 1239 28.1
Cpa.g.sc50.71 Carica papaya HOM05D006994 ORTHO05D008229 2.7e-76 291.6 1015 29.4
Atru.chr6.1474 Acer truncatum HOM05D006994 ORTHO05D008229 6.7e-75 287.0 960 29.6
PGSC0003DMG400017294 Solanum tuberosum HOM05D006994 ORTHO05D008229 2.6e-74 285.0 1229 28.4
Sopen07g029270 Solanum pennellii HOM05D006994 ORTHO05D008229 1.7e-70 272.3 1229 28.5
Nitab4.5_0007153g0010 Nicotiana tabacum HOM05D006994 ORTHO05D008229 1.1e-64 253.1 1211 27.6
MD17G1141700 Malus domestica HOM05D006994 ORTHO05D008229 1.7e-62 245.7 869 31.6
Manes.02G085800 Manihot esculenta HOM05D006994 ORTHO05D008229 5.0e-62 244.2 1029 28.2
Solyc07g055910.4 Solanum lycopersicum HOM05D006994 ORTHO05D008229 1.5e-61 242.7 1002 29.2
DCAR_021306 Daucus carota HOM05D006994 ORTHO05D008229 7.2e-61 240.4 1369 26.4
Aqoxy4G00195 Aquilegia oxysepala HOM05D006994 ORTHO05D008229 4.7e-60 237.7 1299 27.6
CAN.G1332.1 Capsicum annuum HOM05D006994 ORTHO05D008229 2.8e-57 228.4 1195 25.8
SalBow7G4498 Salvia bowleyana HOM05D006994 ORTHO05D008229 8.3e-57 226.9 1034 28.3
PGR042G2686 Punica granatum HOM05D006994 ORTHO05D008229 2.0e-55 222.2 1269 26.4
CAN.G585.58 Capsicum annuum HOM05D006994 ORTHO05D008229 3.3e-53 214.9 1188 26.2
Peaxi162Scf00154g00620 Petunia axillaris HOM05D006994 ORTHO05D008229 2.1e-52 212.2 1170 25.2
MSTRG.15058 Avicennia marina HOM05D006994 ORTHO05D008229 5.7e-50 204.1 1142 28.0
Eucgr.A01960 Eucalyptus grandis HOM05D006994 ORTHO05D008229 5.7e-50 204.1 1212 25.8
Sed0021960 Sechium edule HOM05D006994 ORTHO05D008229 2.2e-49 202.2 1248 25.1
Nitab4.5_0001121g0180 Nicotiana tabacum HOM05D006994 ORTHO05D008229 5.4e-48 197.6 1220 26.0
PSO541G2047 Papaver somniferum HOM05D006994 ORTHO05D008229 1.9e-45 189.1 1325 23.0
CAN.G1481.2 Capsicum annuum HOM05D006994 ORTHO05D008229 9.5e-45 186.8 1156 25.0
Oeu041607.1 Olea europaea HOM05D006994 ORTHO05D008229 2.0e-42 179.1 799 28.7
PSO675G3324 Papaver somniferum HOM05D006994 ORTHO05D008229 5.8e-42 177.6 1349 23.5
CsaV3_6G037970 Cucumis sativus L. HOM05D006994 ORTHO05D008229 8.3e-41 173.7 1299 24.9
MELO3C014460.2 Cucumis melo HOM05D006994 ORTHO05D008229 5.6e-37 161.0 1289 24.6
Sed0007753 Sechium edule HOM05D006994 ORTHO05D008229 7.5e-34 150.6 1224 23.0
Glyma.08G310800 Glycine max HOM05D006994 ORTHO05D008229 1.9e-32 146.0 1380 23.5
Glyma.02G288000 Glycine max HOM05D006994 ORTHO05D008229 1.2e-31 143.3 1085 25.9
arahy.Tifrunner.gnm1.ann1.T2GFFQ Arachis hypogaea HOM05D006994 ORTHO05D008229 1.0e-30 140.2 801 25.6
ClCG09G022300 Citrullus lanatus HOM05D006994 ORTHO05D008229 5.1e-30 137.9 1296 23.1
Lalb_Chr04g0248671 Lupinus albus HOM05D006994 ORTHO05D008229 2.1e-28 132.5 946 24.7
arahy.Tifrunner.gnm1.ann1.0D28PY Arachis hypogaea HOM05D006994 ORTHO05D008229 4.7e-28 131.3 1106 24.3
Ca_06289_v3 Cicer arietinum L. HOM05D006994 ORTHO05D008229 1.4e-27 129.8 1061 24.3
Glyma.14G026900 Glycine max HOM05D006994 ORTHO05D008229 1.5e-26 126.3 1055 25.3
Medtr5g091810 Medicago truncatula HOM05D006994 ORTHO05D008229 2.2e-25 122.5 1121 23.7
Hma1.2p1_0036F.1_g023740 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 3.8e-25 121.7 252 42.9
Lalb_Chr17g0348341 Lupinus albus HOM05D006994 ORTHO05D008229 2.4e-24 119.0 763 24.8
TPR.G12670 Trifolium pratense HOM05D006994 ORTHO05D008229 2.4e-24 119.0 1093 24.2
Cpa.g.sc50.70 Carica papaya HOM05D006994 ORTHO05D008229 1.3e-22 113.2 134 47.0
Phvul.008G190400 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 1.3e-22 113.2 945 24.6
VMungo0647G0009 Vigna mungo HOM05D006994 ORTHO05D008229 8.6e-22 110.5 941 24.9
LjContig00310g0024424 Lotus japonicus HOM05D006994 ORTHO05D008229 1.9e-21 109.4 957 23.9
CDE08G1216 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 2.5e-21 109.0 1188 23.7
MSTRG.6762 Avicennia marina HOM05D006994 ORTHO05D008229 9.6e-21 107.1 970 25.3
Glyma.18G104900 Glycine max HOM05D006994 ORTHO05D008229 3.6e-20 105.1 1083 23.8
VMungo0540G1807 Vigna mungo HOM05D006994 ORTHO05D008229 4.7e-20 104.8 986 23.0
Psat0s1339g0080 Pisum sativum HOM05D006994 ORTHO05D008229 1.1e-19 103.6 909 23.8
CiPaw.03G188100 Carya illinoinensis HOM05D006994 ORTHO05D008229 1.2e-18 100.1 213 36.2
Sopen06g004440 Solanum pennellii HOM05D006994 ORTHO05D008229 1.5e-18 99.8 746 24.1
Phvul.006G035100 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 8.4e-17 94.0 1177 22.9
CDE02G3923 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 3.2e-16 92.0 1111 23.1
AL5G40540 Arabidopsis lyrata HOM05D014107 ORTHO05D008229 3.0e-14 85.5 122 41.0
AT3G58770 Arabidopsis thaliana HOM05D014107 ORTHO05D008229 3.0e-14 85.5 122 40.2
FAN05G1234 Fragaria x ananassa HOM05D006994 ORTHO05D008229 5.1e-14 84.7 184 37.0
ATR0602G060 Amborella trichopoda HOM05D006994 ORTHO05D008229 1.6e-12 79.7 983 21.8
Atru.chr6.1475 Acer truncatum HOM05D006994 ORTHO05D008229 6.2e-12 77.8 156 34.0
Cfa022556 Carpinus fangiana HOM05D006994 ORTHO05D008229 6.2e-12 77.8 160 35.6
arahy.Tifrunner.gnm1.ann1.0VWG63 Arachis hypogaea HOM05D006994 ORTHO05D008229 5.3e-11 74.7 934 23.3
Oeu014262.1 Olea europaea HOM05D006994 ORTHO05D008229 1.2e-10 73.6 216 32.9
CDE02G3671 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 4.5e-10 71.6 87 47.1
FAN05G3500 Fragaria x ananassa HOM05D006994 ORTHO05D008229 4.5e-10 71.6 243 32.5
HPP92_005186 Vanilla planifolia HOM05D006994 ORTHO05D008229 9.9e-10 70.5 674 24.8
Thhalv10005808m.g Eutrema salsugineum HOM05D014107 ORTHO05D008229 1.7e-09 69.7 191 33.0
Gohir.A09G006800 Gossypium hirsutum HOM05D006994 ORTHO05D008229 4.9e-09 68.2 61 52.5
Solyc06g009803.1 Solanum lycopersicum HOM05D006994 ORTHO05D008229 8.4e-09 67.4 95 42.1
BcaC07g40225 Brassica carinata HOM05D014107 ORTHO05D008229 1.1e-08 67.0 56 53.6
Migut.H02109 Erythranthe guttata HOM05D006994 ORTHO05D008229 1.9e-08 66.2 51 58.8
Psat5g180160 Pisum sativum HOM05D006994 ORTHO05D008229 7.1e-08 64.3 233 25.8
arahy.Tifrunner.gnm1.ann1.EW4W42 Arachis hypogaea HOM05D006994 ORTHO05D008229 1.2e-07 63.5 936 22.3
vmacro23315 Vaccinium macrocarpon HOM05D008336 ORTHO05D011831 1.2e-07 63.5 40 65.0
CARHR169160 Cardamine hirsuta HOM05D014107 ORTHO05D008229 2.7e-07 62.4 183 28.4
Sp5g04070 Schrenkiella parvula HOM05D014107 ORTHO05D008229 3.5e-07 62.0 179 32.4
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 4.6e-07 61.6 67 49.3
BcaC07g40294 Brassica carinata HOM05D014107 ORTHO05D003056 1.3e-06 60.1 46 58.7
C08p34100 Brassica napus HOM05D014107 ORTHO05D003056 1.3e-06 60.1 46 58.7
SEGI_38675 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 1.8e-06 59.7 70 37.1
Rhsim01G0070500 Rhododendron simsii HOM05D008336 ORTHO05D011520 3.0e-06 58.9 45 57.8
vmacro10190 Vaccinium macrocarpon HOM05D008336 ORTHO05D011831 5.1e-06 58.2 42 59.5
vmacro23524 Vaccinium macrocarpon HOM05D008336 ORTHO05D011831 5.1e-06 58.2 42 59.5
Rhsim03G0182800 Rhododendron simsii HOM05D022062 ORTHO05D025123 6.7e-06 57.8 40 60.0
Rhsim08G0116600 Rhododendron simsii HOM05D008336 ORTHO05D011520 8.7e-06 57.4 42 54.8


User provided reference genes

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