Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro23320 Vaccinium macrocarpon HOM05D005405 ORTHO05D006333 0.0e+00 1968.7 1001 100.0
RhsimUnG0181000 Rhododendron simsii HOM05D005405 ORTHO05D006333 1.1e-203 714.5 775 58.1
RhsimUnG0135700 Rhododendron simsii HOM05D005405 ORTHO05D006333 2.0e-200 703.7 774 57.8
CSS0043604 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 4.9e-175 619.4 851 50.5
Dinv38269 Davidia involucrata HOM05D005405 ORTHO05D006333 5.3e-145 519.6 872 45.9
Rhsim02G0053500 Rhododendron simsii HOM05D005405 ORTHO05D006333 4.2e-134 483.4 836 43.4
Actinidia11394 Actinidia chinensis HOM05D005405 ORTHO05D006333 1.1e-129 468.8 833 43.8
vmacro15506 Vaccinium macrocarpon HOM05D005405 ORTHO05D006333 2.1e-122 444.5 827 42.2
CSS0036421 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 2.0e-120 438.0 598 51.7
CSS0015206 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 2.2e-119 434.5 598 51.5
TAR362G0670 Trochodendron aralioides HOM05D005405 ORTHO05D006333 3.0e-92 344.4 938 34.8
Prupe.1G003200 Prunus persica HOM05D005405 ORTHO05D006333 1.2e-88 332.4 855 35.0
QL06p023456 Quercus lobata HOM05D005405 ORTHO05D006333 5.9e-88 330.1 876 34.1
MD04G1003700 Malus domestica HOM05D005405 ORTHO05D006333 8.0e-85 319.7 853 34.9
Lj6A613T36 Lonicera japonica HOM05D005405 ORTHO05D006333 9.1e-81 306.2 789 36.6
Oeu022333.1 Olea europaea HOM05D005405 ORTHO05D006333 9.1e-81 306.2 871 34.8
Cfa014900 Carpinus fangiana HOM05D005405 ORTHO05D006333 1.6e-80 305.4 874 33.3
Sabra03G0129300 Salix brachista HOM05D005405 ORTHO05D006333 2.0e-80 305.1 842 33.4
Haze_11572 Corylus avellana HOM05D005405 ORTHO05D006333 2.7e-80 304.7 872 33.1
Potri.003G176500 Populus trichocarpa HOM05D005405 ORTHO05D006333 6.5e-79 300.1 839 33.0
Cc03_g07300 Coffea canephora HOM05D005405 ORTHO05D006333 2.5e-78 298.1 851 33.6
COL.COLO4_20311 Corchorus olitorius HOM05D005405 ORTHO05D006333 1.6e-77 295.4 847 34.0
TAR365G1216 Trochodendron aralioides HOM05D005405 ORTHO05D006333 1.8e-76 292.0 750 36.7
MSTRG.21949 Avicennia marina HOM05D005405 ORTHO05D006333 3.0e-76 291.2 866 33.9
CiPaw.02G068100 Carya illinoinensis HOM05D005405 ORTHO05D006333 3.0e-76 291.2 640 38.8
FvH4_4g00300 Fragaria vesca HOM05D005405 ORTHO05D006333 3.0e-76 291.2 833 33.1
Atru.chr4.1776 Acer truncatum HOM05D005405 ORTHO05D006333 4.0e-76 290.8 851 34.2
Thecc.04G210400 Theobroma cacao HOM05D005405 ORTHO05D006333 4.0e-76 290.8 838 34.4
DCAR_030784 Daucus carota HOM05D005405 ORTHO05D006333 5.2e-76 290.4 890 32.2
RcHm_v2.0_Chr4g0385131 Rosa chinensis HOM05D005405 ORTHO05D006333 2.6e-75 288.1 857 33.0
Manes.15G050712 Manihot esculenta HOM05D005405 ORTHO05D006333 2.0e-72 278.5 856 34.1
Sopen09g034410 Solanum pennellii HOM05D005405 ORTHO05D006333 7.7e-72 276.6 825 33.5
Gorai.005G035400 Gossypium raimondii HOM05D005405 ORTHO05D006333 1.3e-71 275.8 844 32.6
Nitab4.5_0003904g0030 Nicotiana tabacum HOM05D005405 ORTHO05D006333 1.7e-71 275.4 839 33.6
Nn3g19905 Nelumbo nucifera HOM05D005405 ORTHO05D006333 2.3e-71 275.0 756 33.1
Gohir.A02G024600 Gossypium hirsutum HOM05D005405 ORTHO05D006333 1.9e-70 271.9 844 32.9
Duzib268G1063 Durio zibethinus HOM05D005405 ORTHO05D006333 5.6e-70 270.4 854 33.4
Nitab4.5_0002920g0020 Nicotiana tabacum HOM05D005405 ORTHO05D006333 1.6e-69 268.9 848 33.1
Solyc09g091480.4 Solanum lycopersicum HOM05D005405 ORTHO05D006333 6.1e-69 266.9 828 32.6
Nn1g03142 Nelumbo nucifera HOM05D005405 ORTHO05D006333 3.0e-68 264.6 751 33.6
Gohir.D02G031900 Gossypium hirsutum HOM05D005405 ORTHO05D006333 4.0e-68 264.2 839 31.7
Migut.N00342 Erythranthe guttata HOM05D005405 ORTHO05D006333 2.6e-67 261.5 841 33.1
Sabra01G0036300 Salix brachista HOM05D005405 ORTHO05D006333 3.4e-67 261.2 877 31.1
FAN17G2022 Fragaria x ananassa HOM05D005405 ORTHO05D006333 5.7e-67 260.4 850 31.8
PGSC0003DMG400029647 Solanum tuberosum HOM05D005405 ORTHO05D006333 9.2e-65 253.1 824 32.2
FAN17G2416 Fragaria x ananassa HOM05D005405 ORTHO05D006333 1.0e-63 249.6 872 31.1
Peaxi162Scf00047g01223 Petunia axillaris HOM05D005405 ORTHO05D006333 1.2e-61 242.7 929 30.2
Rhsim02G0140000 Rhododendron simsii HOM05D005405 ORTHO05D006333 3.6e-61 241.1 489 41.7
Aqoxy7G02749 Aquilegia oxysepala HOM05D005405 ORTHO05D006333 1.4e-60 239.2 839 32.3
Gohir.A09G202500 Gossypium hirsutum HOM05D005405 ORTHO05D006333 4.0e-60 237.7 767 33.5
ECA238G1203 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.4e-59 234.2 826 30.8
Duzib151G0041 Durio zibethinus HOM05D005405 ORTHO05D006333 4.1e-57 227.6 853 31.5
Gorai.006G220000 Gossypium raimondii HOM05D005405 ORTHO05D006333 4.1e-57 227.6 849 31.7
Gohir.D09G196500 Gossypium hirsutum HOM05D005405 ORTHO05D006333 7.0e-57 226.9 848 31.4
FAN12G1620 Fragaria x ananassa HOM05D005405 ORTHO05D006333 2.0e-56 225.3 822 30.7
Lalb_Chr03g0036631 Lupinus albus HOM05D005405 ORTHO05D006333 6.0e-56 223.8 825 32.5
Glyma.20G076700 Glycine max HOM05D005405 ORTHO05D006333 1.0e-55 223.0 819 32.4
MELO3C006332.2 Cucumis melo HOM05D005405 ORTHO05D006333 6.6e-55 220.3 860 30.7
Medtr1g047180 Medicago truncatula HOM05D005405 ORTHO05D006333 8.6e-55 219.9 817 31.5
CsaV3_3G011210 Cucumis sativus L. HOM05D005405 ORTHO05D006333 5.6e-54 217.2 859 30.7
Duzib268G1747 Durio zibethinus HOM05D005405 ORTHO05D006333 7.3e-54 216.9 817 31.8
CANSAT78G2177 Cannabis sativa HOM05D005405 ORTHO05D006333 4.0e-52 211.1 872 30.5
Eucgr.H00089 Eucalyptus grandis HOM05D005405 ORTHO05D006333 1.5e-51 209.1 834 30.1
Sed0022326 Sechium edule HOM05D005405 ORTHO05D006333 3.4e-51 208.0 858 30.7
Glyma.10G124600 Glycine max HOM05D005405 ORTHO05D006333 2.9e-50 204.9 839 30.4
TPR.G11288 Trifolium pratense HOM05D005405 ORTHO05D006333 3.7e-50 204.5 742 32.3
Psat6g048040 Pisum sativum HOM05D005405 ORTHO05D006333 4.1e-49 201.1 824 30.6
AL1G14510 Arabidopsis lyrata HOM05D005405 ORTHO05D006333 7.1e-49 200.3 771 29.7
CSS0016720 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 1.2e-48 199.5 257 46.3
CARHR004180 Cardamine hirsuta HOM05D005405 ORTHO05D006333 1.3e-47 196.1 769 30.4
Thhalv10007101m.g Eutrema salsugineum HOM05D005405 ORTHO05D006333 1.7e-47 195.7 783 30.9
Lj6g0005257 Lotus japonicus HOM05D001191 ORTHO05D006333 3.9e-47 194.5 819 31.1
THA.LOC104816022 Tarenaya hassleriana HOM05D005405 ORTHO05D006333 1.1e-46 193.0 799 29.3
Phvul.007G236500 Phaseolus vulgaris HOM05D005405 ORTHO05D006333 2.5e-46 191.8 816 29.9
SGA_v2.0_scaffold2G00820 Striga asiatica HOM05D005405 ORTHO05D006333 9.5e-46 189.9 490 35.7
Ca_11844_v3 Cicer arietinum L. HOM05D005405 ORTHO05D006333 1.2e-45 189.5 615 33.5
Lalb_Chr19g0128851 Lupinus albus HOM05D005405 ORTHO05D006333 1.2e-45 189.5 805 30.2
MBI10_g03399_MAGBIO Magnolia biondii HOM05D005405 ORTHO05D006333 1.6e-45 189.1 738 30.2
Sp1g03630 Schrenkiella parvula HOM05D005405 ORTHO05D006333 2.1e-45 188.7 787 29.4
Cpa.g.sc59.99 Carica papaya HOM05D005405 ORTHO05D006333 2.8e-45 188.3 518 34.6
Carub.0001s0404 Capsella rubella HOM05D005405 ORTHO05D006333 3.6e-45 188.0 787 30.0
PGR142G3403 Punica granatum HOM05D005405 ORTHO05D006333 3.6e-45 188.0 811 30.2
Gohir.D10G144600 Gossypium hirsutum HOM05D005405 ORTHO05D006333 2.6e-43 181.8 951 28.0
Gorai.011G161600 Gossypium raimondii HOM05D005405 ORTHO05D006333 4.4e-43 181.0 948 28.4
VMungo0720G2049 Vigna mungo HOM05D005405 ORTHO05D006333 7.6e-43 180.3 821 28.9
AT1G04790 Arabidopsis thaliana HOM05D005405 ORTHO05D006333 1.3e-42 179.5 781 30.5
BcaC05g24440 Brassica carinata HOM05D005405 ORTHO05D006333 8.4e-42 176.8 591 32.0
BraA10t42596Z Brassica rapa HOM05D005405 ORTHO05D006333 4.1e-41 174.5 607 31.8
BolC5t29078H Brassica oleracea HOM05D005405 ORTHO05D006333 2.1e-40 172.2 777 29.6
HanXRQChr14g0435041 Helianthus annuus HOM05D005405 ORTHO05D006333 2.7e-40 171.8 789 28.6
arahy.Tifrunner.gnm1.ann1.6I3KXF Arachis hypogaea HOM05D005405 ORTHO05D006333 6.0e-40 170.6 792 29.3
C05p02970 Brassica napus HOM05D005405 ORTHO05D006333 7.8e-40 170.2 776 28.9
BcaB02g06900 Brassica carinata HOM05D005405 ORTHO05D006333 1.9e-38 165.6 782 28.5
ClCG05G003540 Citrullus lanatus HOM05D005405 ORTHO05D006333 3.3e-38 164.9 822 29.2
THA.LOC104801040 Tarenaya hassleriana HOM05D005405 ORTHO05D006333 5.6e-38 164.1 616 29.1
Ciclev10004706m.g Citrus clementina HOM05D005405 ORTHO05D006333 6.2e-37 160.6 561 30.7
Lsat_1_v5_gn_2_43220 Lactuca sativa HOM05D005405 ORTHO05D006333 6.2e-37 160.6 648 29.3
Lsat_1_v5_gn_1_72381 Lactuca sativa HOM05D005405 ORTHO05D006333 1.8e-36 159.1 773 27.4
Hund18545 Selenicereus undatus HOM05D005405 ORTHO05D006333 4.0e-36 157.9 843 27.8
Sed0004689 Sechium edule HOM05D005405 ORTHO05D006333 5.2e-36 157.5 854 27.5
A10p03220 Brassica napus HOM05D005405 ORTHO05D006333 1.1e-33 149.8 613 29.4
EL10Ac7g18092 Beta vulgaris HOM05D005405 ORTHO05D006333 1.9e-33 149.1 651 30.4
CSS0040970 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 7.1e-33 147.1 199 54.8
PSO832G0957 Papaver somniferum HOM05D005405 ORTHO05D006333 9.3e-33 146.7 326 35.6
Aa31LG1G20100 Aethionema arabicum HOM05D005405 ORTHO05D006333 7.3e-30 137.1 902 25.6
Gohir.A10G121500 Gossypium hirsutum HOM05D005405 ORTHO05D006333 1.6e-29 136.0 866 26.0
Os04g0511600 Oryza sativa ssp. japonica HOM05D005405 ORTHO05D006333 2.6e-27 128.6 865 26.2
ATR0787G170 Amborella trichopoda HOM05D005405 ORTHO05D006333 1.3e-26 126.3 659 27.2
AUR62001292 Chenopodium quinoa HOM05D005405 ORTHO05D006333 1.7e-26 125.9 812 26.8
vmacro00370 Vaccinium macrocarpon HOM05D014992 ORTHO05D006333 3.8e-26 124.8 155 46.5
vmacro22831 Vaccinium macrocarpon HOM05D014992 ORTHO05D008374 3.8e-26 124.8 155 46.5
GSVIVG01029065001 Vitis vinifera HOM05D005405 ORTHO05D006333 4.9e-26 124.4 381 36.2
vmacro21938 Vaccinium macrocarpon HOM05D014992 ORTHO05D006333 1.1e-25 123.2 155 45.8
AUR62025677 Chenopodium quinoa HOM05D005405 ORTHO05D006333 1.9e-25 122.5 780 26.3
PSO764G0275 Papaver somniferum HOM05D059662 ORTHO05D006333 1.6e-24 119.4 835 27.3
Ah.08g218040 Amaranthus hybridus HOM05D005405 ORTHO05D006333 4.3e-22 111.3 793 26.1
Ciclev10006228m.g Citrus clementina HOM05D005405 ORTHO05D006333 2.1e-21 109.0 66 75.8
vmacro18337 Vaccinium macrocarpon HOM05D000147 ORTHO05D001254 2.1e-21 109.0 154 43.5
arahy.Tifrunner.gnm1.ann1.7RGD68 Arachis hypogaea HOM05D005405 ORTHO05D006333 1.4e-20 106.3 749 26.6
vmacro22373 Vaccinium macrocarpon HOM05D014992 ORTHO05D003168 1.8e-20 105.9 155 42.6
Hund05655 Selenicereus undatus HOM05D005405 ORTHO05D006333 1.4e-17 96.3 526 29.3
CDE02G4244 Ceratophyllum demersum HOM05D005405 ORTHO05D006333 1.0e-15 90.1 146 39.7
Sc22g0000010 Simmondsia chinensis HOM05D005405 ORTHO05D006333 2.3e-15 89.0 599 27.9
Lj3C583T4 Lonicera japonica HOM05D005405 ORTHO05D006333 3.0e-15 88.6 455 27.3
Sc13g0000010 Simmondsia chinensis HOM05D005405 ORTHO05D006333 8.7e-15 87.0 597 27.0
CSS0020692 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 1.1e-14 86.7 55 70.9
CSS0029812 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 1.1e-14 86.7 55 70.9
Zm00001eb157090 Zea mays HOM05D029717 ORTHO05D006333 3.3e-14 85.1 384 28.9
Zm00001eb426420 Zea mays HOM05D005405 ORTHO05D006333 4.3e-14 84.7 823 23.0
HPP92_022603 Vanilla planifolia HOM05D006987 ORTHO05D000525 5.6e-14 84.3 868 25.1
ECA248G0186 Erigeron canadensis HOM05D005405 ORTHO05D006333 1.6e-13 82.8 821 23.6
GSVIVG01029064001 Vitis vinifera HOM05D005405 ORTHO05D006333 1.6e-13 82.8 83 56.6
Mapoly0116s0016 Marchantia polymorpha HOM05D005405 ORTHO05D006333 2.8e-13 82.0 321 27.4
CSS0015294 Camellia sinensis var. sinensis HOM05D067580 ORTHO05D006333 1.8e-12 79.3 68 64.7
CSS0038353 Camellia sinensis var. sinensis HOM05D067580 ORTHO05D006333 1.8e-12 79.3 68 64.7
Pp3c2_17560 Physcomitrium patens HOM05D005405 ORTHO05D006333 1.8e-12 79.3 352 26.1
SMO169G0140 Selaginella moellendorffii HOM05D005405 ORTHO05D006333 2.4e-12 79.0 152 35.5
SEGI_12739 Sequoiadendron giganteum HOM05D005405 ORTHO05D006333 3.1e-12 78.6 586 24.1
HPP92_007064 Vanilla planifolia HOM05D005405 ORTHO05D006333 4.0e-12 78.2 76 46.1
Zm00001eb360110 Zea mays HOM05D029717 ORTHO05D006333 4.5e-11 74.7 67 53.7
Cpa.g.sc59.100 Carica papaya HOM05D005405 ORTHO05D006333 5.8e-11 74.3 334 28.4
vmacro23448 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 1.7e-10 72.8 45 80.0
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 7.1e-09 67.4 40 82.5
Nn1g05672 Nelumbo nucifera HOM05D005405 ORTHO05D006333 6.0e-08 64.3 35 74.3
vmacro19433 Vaccinium macrocarpon HOM05D000012 ORTHO05D002455 8.7e-07 60.5 55 63.6
CSS0039234 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 1.9e-06 59.3 113 38.1
PRCOL_00004693 Prasinoderma coloniale HOM05D005405 ORTHO05D006333 2.5e-06 58.9 93 35.5
vmacro05063 Vaccinium macrocarpon HOM05D001419 ORTHO05D001376 5.7e-06 57.8 57 56.1
vmacro18579 Vaccinium macrocarpon HOM05D003001 ORTHO05D003494 7.4e-06 57.4 56 53.6


User provided reference genes

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