Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1251.5 623 100.0
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1080.9 692 82.1
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 2.7e-280 968.4 686 74.5
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 6.8e-276 953.7 692 72.0
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 8.9e-276 953.4 692 71.7
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 1.0e-268 929.9 693 70.1
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 5.2e-268 927.5 692 69.5
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 8.9e-268 926.8 640 74.4
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 1.5e-267 926.0 693 69.8
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 2.0e-267 925.6 692 69.9
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 4.1e-265 917.9 692 69.2
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 3.2e-257 891.7 688 68.3
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 1.2e-256 889.8 684 68.6
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 1.1e-254 883.2 627 72.7
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 7.3e-254 880.6 685 66.7
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 2.1e-253 879.0 637 71.4
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 4.7e-253 877.9 634 71.3
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 1.1e-252 876.7 626 71.6
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 1.1e-252 876.7 628 70.9
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 1.8e-252 875.9 650 70.6
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 3.1e-252 875.2 633 71.2
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 3.1e-252 875.2 637 71.0
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 5.2e-252 874.4 637 71.0
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 6.8e-252 874.0 631 69.9
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 1.5e-251 872.8 631 69.7
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 3.4e-251 871.7 629 71.4
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 3.4e-251 871.7 686 66.3
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 7.6e-251 870.5 635 71.0
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 9.9e-251 870.2 635 71.2
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 1.7e-250 869.4 687 65.9
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 1.7e-250 869.4 688 65.7
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 2.9e-250 868.6 635 71.3
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 2.9e-250 868.6 627 71.0
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 3.7e-250 868.2 631 69.4
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 4.9e-250 867.8 635 70.2
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 8.4e-250 867.1 626 69.5
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 1.1e-249 866.7 635 68.8
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 1.4e-249 866.3 628 69.1
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 1.4e-249 866.3 688 65.3
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 1.4e-249 866.3 634 70.0
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 1.9e-249 865.9 686 65.9
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 2.4e-249 865.5 631 69.9
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 3.2e-249 865.1 631 70.0
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 4.1e-249 864.8 626 71.1
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 7.1e-249 864.0 633 69.4
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 9.2e-249 863.6 627 70.7
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 1.2e-248 863.2 626 68.8
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 1.6e-248 862.8 629 69.5
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 1.6e-248 862.8 686 65.9
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 6.0e-248 860.9 624 70.0
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 6.0e-248 860.9 631 68.9
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 2.3e-247 859.0 657 68.2
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 3.9e-247 858.2 628 69.7
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 1.5e-246 856.3 626 69.0
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 1.5e-246 856.3 630 70.2
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 2.1e-245 852.4 637 69.5
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 2.1e-245 852.4 628 68.5
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 2.1e-245 852.4 628 68.5
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 2.1e-245 852.4 634 68.9
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 4.7e-245 851.3 634 68.3
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 6.2e-245 850.9 628 69.4
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 1.8e-244 849.4 700 64.4
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 5.2e-244 847.8 630 68.1
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 5.2e-244 847.8 629 68.0
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 6.8e-244 847.4 628 69.3
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 8.9e-244 847.0 635 68.5
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 1.2e-243 846.7 658 67.6
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 1.5e-243 846.3 631 67.4
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 2.0e-243 845.9 628 68.0
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 2.0e-243 845.9 653 67.2
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 3.4e-243 845.1 630 68.6
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 5.8e-243 844.3 625 68.2
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 7.6e-243 844.0 629 69.0
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 7.6e-243 844.0 630 68.1
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 1.3e-242 843.2 699 64.4
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 2.2e-242 842.4 628 68.8
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 2.2e-242 842.4 629 67.7
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 2.9e-242 842.0 625 68.8
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 1.9e-241 839.3 629 68.7
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 1.9e-241 839.3 629 68.7
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 9.3e-241 837.0 629 68.5
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 1.6e-240 836.3 628 68.5
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 3.5e-240 835.1 628 68.0
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 3.5e-240 835.1 628 68.0
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 4.6e-240 834.7 628 68.3
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 6.0e-240 834.3 636 68.4
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 6.0e-240 834.3 632 67.2
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 6.0e-240 834.3 629 68.4
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 6.0e-240 834.3 629 68.4
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 1.3e-239 833.2 644 65.8
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 1.3e-239 833.2 686 63.6
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 2.3e-239 832.4 628 68.2
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 3.9e-239 831.6 621 68.9
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 8.7e-239 830.5 627 67.0
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 8.7e-239 830.5 626 68.2
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 3.3e-238 828.6 621 68.8
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 1.6e-237 826.2 611 70.0
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 3.1e-236 822.0 629 66.3
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 4.4e-235 818.1 655 65.2
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 9.9e-235 817.0 628 65.8
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 4.9e-234 814.7 627 66.7
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 7.1e-233 810.8 628 65.3
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 2.7e-232 808.9 624 67.5
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 3.5e-232 808.5 499 79.4
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 1.7e-231 806.2 605 69.6
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 1.7e-231 806.2 633 65.9
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 8.7e-231 803.9 686 62.8
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 1.1e-230 803.5 769 57.5
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 7.3e-230 800.8 769 57.5
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 7.3e-230 800.8 626 64.7
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 9.0e-228 793.9 686 61.7
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 4.3e-222 775.0 543 73.1
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 8.1e-221 770.8 614 64.7
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 5.8e-219 764.6 623 65.5
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 2.9e-218 762.3 597 66.5
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 3.8e-218 761.9 650 60.8
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 1.6e-187 660.2 624 58.5
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 1.2e-184 650.6 632 53.3
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 2.1e-184 649.8 632 52.4
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 4.7e-184 648.7 621 59.3
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 3.3e-182 642.5 630 53.2
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 2.9e-178 629.4 674 49.1
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 2.5e-177 626.3 636 50.0
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 3.4e-174 615.9 601 55.7
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.8e-159 567.0 467 63.8
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 5.4e-156 555.4 311 83.6
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 3.2e-140 503.1 503 52.3
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 2.4e-132 476.9 305 75.4
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 1.9e-116 424.1 342 64.0
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 1.3e-104 384.8 387 53.7
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 5.9e-78 296.2 301 56.5
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 1.8e-63 248.1 136 80.9
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 5.5e-52 209.9 138 69.6
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 1.5e-36 158.7 207 45.9
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 2.4e-31 141.4 73 86.3
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 3.2e-31 141.0 156 50.0
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 3.1e-26 124.4 97 64.9
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 5.2e-18 97.1 176 39.8
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 1.0e-13 82.8 45 82.2
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 5.1e-13 80.5 49 71.4
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 5.6e-12 77.0 76 44.7
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 3.4e-09 67.8 33 93.9
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 9.3e-07 59.7 137 34.3
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 2.1e-06 58.5 39 69.2


User provided reference genes

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