Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 2.4e-215 751.9 388 100.0
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 3.6e-182 641.7 388 84.0
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 9.7e-172 607.1 388 81.2
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 1.5e-169 599.7 388 77.8
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 7.7e-169 597.4 386 79.0
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 2.5e-167 592.4 386 78.8
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 4.2e-167 591.7 388 76.3
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 2.7e-166 589.0 388 77.3
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 6.1e-166 587.8 388 76.8
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 5.2e-165 584.7 387 76.2
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 3.3e-164 582.0 388 75.8
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 4.4e-164 581.6 388 76.3
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 1.7e-163 579.7 388 75.8
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 2.2e-163 579.3 388 75.5
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 2.8e-163 578.9 388 75.8
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 1.4e-162 576.6 385 76.6
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 1.4e-162 576.6 389 76.1
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 9.1e-162 573.9 388 75.3
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 1.6e-161 573.2 388 77.3
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 2.0e-161 572.8 387 76.2
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 2.6e-161 572.4 383 76.8
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 5.9e-161 571.2 384 75.3
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 1.0e-160 570.5 388 75.5
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 1.0e-160 570.5 384 75.3
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 1.3e-160 570.1 384 74.0
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 2.2e-160 569.3 390 75.4
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 2.2e-160 569.3 384 75.5
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 5.0e-160 568.2 383 74.9
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 8.5e-160 567.4 388 75.5
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 3.2e-159 565.5 388 74.7
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 3.2e-159 565.5 383 74.9
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 5.5e-159 564.7 406 71.4
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 1.2e-158 563.5 384 74.7
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 2.7e-158 562.4 388 74.2
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 3.6e-158 562.0 388 72.9
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 1.8e-157 559.7 388 72.9
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 1.2e-156 557.0 388 72.7
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 3.3e-156 555.4 388 72.9
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 5.7e-156 554.7 388 72.2
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 6.3e-155 551.2 390 72.1
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 1.4e-154 550.1 381 73.2
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 2.4e-154 549.3 388 73.5
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 2.4e-154 549.3 388 73.5
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 7.0e-154 547.7 388 72.7
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 1.2e-153 547.0 360 78.6
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 5.9e-153 544.7 388 70.9
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 1.3e-152 543.5 389 71.7
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 1.7e-152 543.1 389 72.0
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 2.9e-152 542.3 384 72.1
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 3.8e-152 542.0 383 71.5
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 3.8e-152 542.0 388 70.9
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 6.5e-152 541.2 384 71.9
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 6.5e-152 541.2 386 69.9
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 1.9e-151 539.7 383 71.3
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 1.9e-151 539.7 386 70.7
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 2.5e-151 539.3 388 70.9
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 7.2e-151 537.7 388 70.6
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 7.2e-151 537.7 385 70.9
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 4.7e-150 535.0 388 69.8
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 6.8e-149 531.2 383 70.8
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 1.2e-148 530.4 396 69.7
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 1.5e-148 530.0 393 70.7
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 2.0e-148 529.6 383 71.0
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 2.6e-148 529.3 388 69.8
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 4.4e-148 528.5 389 70.2
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 4.4e-148 528.5 388 70.4
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 7.5e-148 527.7 388 69.8
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 1.7e-147 526.6 389 69.7
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 2.2e-147 526.2 384 69.8
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 2.8e-147 525.8 383 69.7
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 8.3e-147 524.2 341 79.5
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 2.7e-145 519.2 385 69.4
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 4.5e-145 518.5 389 69.9
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 7.7e-145 517.7 388 68.3
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 1.1e-143 513.8 390 68.5
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.5e-143 513.5 420 64.8
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.5e-143 512.7 420 64.8
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 1.4e-141 506.9 394 68.5
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.0e-141 505.8 420 64.0
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 1.2e-140 503.8 388 67.0
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 4.4e-140 501.9 414 64.3
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 7.5e-140 501.1 388 64.9
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.3e-139 500.4 420 63.1
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 1.7e-139 500.0 387 67.7
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 2.4e-138 496.1 348 72.4
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 4.1e-138 495.4 384 66.9
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 1.2e-137 493.8 388 66.0
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 1.0e-136 490.7 387 67.4
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 1.3e-136 490.3 348 71.8
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 2.3e-136 489.6 385 66.8
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 3.8e-136 488.8 385 67.5
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 5.0e-136 488.4 385 67.3
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 8.6e-136 487.6 385 63.6
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 1.5e-135 486.9 386 66.1
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 1.5e-135 486.9 385 66.8
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 1.5e-135 486.9 349 70.5
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 1.9e-135 486.5 388 64.7
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 5.6e-135 485.0 388 64.7
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 9.5e-135 484.2 385 67.0
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 1.6e-134 483.4 385 66.8
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 4.7e-134 481.9 385 66.2
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 6.1e-134 481.5 385 66.5
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 8.0e-134 481.1 385 66.2
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 8.0e-134 481.1 385 66.2
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 2.7e-129 466.1 385 64.7
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 1.3e-128 463.8 385 64.2
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 2.3e-128 463.0 385 64.2
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 3.0e-128 462.6 384 63.0
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 2.5e-127 459.5 385 64.2
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 4.3e-127 458.8 390 63.3
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 1.1e-125 454.1 402 60.4
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 5.2e-125 451.8 337 67.4
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.9e-122 443.4 388 62.4
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 1.2e-121 440.7 385 63.1
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 2.7e-121 439.5 388 59.0
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 9.5e-119 431.0 399 57.6
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 1.2e-118 430.6 389 56.6
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 3.6e-118 429.1 388 58.2
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 1.5e-116 423.7 397 58.2
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 5.8e-116 421.8 377 57.3
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 7.3e-111 404.8 388 56.7
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 4.3e-103 379.0 388 55.4
CDE02G3721 Ceratophyllum demersum HOM05D004239 ORTHO05D005191 7.6e-100 368.2 295 62.7
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 8.7e-96 354.8 271 66.4
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 2.5e-95 353.2 256 71.1
Mapoly0214s0007 Marchantia polymorpha HOM05D004239 ORTHO05D005191 2.1e-94 350.1 437 44.9
Pp3c22_490 Physcomitrium patens HOM05D004239 ORTHO05D005191 6.4e-91 338.6 419 46.8
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 4.0e-85 319.3 299 59.5
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 1.1e-82 311.2 370 48.1
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 5.1e-80 302.4 265 57.4
SMO347G0436 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 3.2e-74 283.1 387 43.9
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 2.5e-71 273.5 173 86.1
CBR_g3053 Chara braunii HOM05D004239 ORTHO05D005191 1.4e-64 251.1 463 36.5
CSS0049885 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 3.3e-63 246.5 164 79.9
Nitab4.5_0000327g0030 Nicotiana tabacum HOM05D004239 ORTHO05D005191 2.6e-52 210.3 142 76.8
SMO167G0025 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 1.0e-51 208.4 245 47.8
Cfa007056 Carpinus fangiana HOM05D004239 ORTHO05D005191 8.8e-48 195.3 151 70.2
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 9.8e-39 165.2 393 31.6
RcHm_v2.0_Chr3g0454481 Rosa chinensis HOM05D004239 ORTHO05D005191 7.0e-37 159.1 128 65.6
Actinidia05710 Actinidia chinensis HOM05D004239 ORTHO05D005191 4.9e-30 136.3 79 86.1
RcHm_v2.0_Chr7g0220941 Rosa chinensis HOM05D004239 ORTHO05D005191 4.1e-29 133.3 89 75.3
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 9.1e-29 132.1 149 53.0
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 9.1e-29 132.1 180 41.7
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 3.8e-27 126.7 155 49.7
COL.COLO4_16926 Corchorus olitorius HOM05D004239 ORTHO05D005191 4.2e-26 123.2 108 59.3
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 2.3e-24 117.5 138 51.4
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 2.6e-23 114.0 119 55.5
AagrBONN_evm.TU.Sc2ySwM_117.3520 Anthoceros agrestis HOM05D004239 ORTHO05D005191 8.3e-22 109.0 213 35.7
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 5.9e-20 102.8 84 60.7
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 7.3e-18 95.9 127 49.6
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 9.5e-18 95.5 127 49.6
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 1.0e-16 92.0 82 57.3
Lsat_1_v5_gn_7_76161 Lactuca sativa HOM05D004239 ORTHO05D005191 4.0e-16 90.1 69 65.2
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 1.7e-14 84.7 125 44.8
Zm00001eb252600 Zea mays HOM05D004239 ORTHO05D005191 1.7e-14 84.7 106 42.5
Zm00001eb193770 Zea mays HOM05D004239 ORTHO05D445176 9.2e-13 79.0 89 47.2
COL.COLO4_16925 Corchorus olitorius HOM05D004239 ORTHO05D005191 1.2e-12 78.6 51 68.6
Potri.015G125201 Populus trichocarpa HOM05D004239 ORTHO05D005191 1.7e-11 74.7 53 62.3
Zm00001eb313220 Zea mays HOM05D004239 ORTHO05D005191 1.1e-10 72.0 83 48.2
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 1.5e-10 71.6 41 87.8
Oeu038248.1 Olea europaea HOM05D004239 ORTHO05D288322 1.6e-09 68.2 42 78.6
arahy.Tifrunner.gnm1.ann1.04YHM3 Arachis hypogaea HOM05D004239 ORTHO05D005191 6.8e-08 62.8 100 45.0
RcHm_v2.0_Chr3g0454471 Rosa chinensis HOM05D004239 ORTHO05D005191 1.5e-07 61.6 36 88.9
Zm00001eb342830 Zea mays HOM05D004239 ORTHO05D005191 3.4e-07 60.5 42 71.4
Zm00001eb019540 Zea mays HOM05D000931 ORTHO05D001924 1.7e-06 58.2 42 71.4


User provided reference genes

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