Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro11530 Vaccinium macrocarpon HOM05D058478 ORTHO05D010375 4.6e-169 597.8 304 100.0
vmacro22921 Vaccinium macrocarpon HOM05D058478 ORTHO05D010375 4.6e-169 597.8 304 100.0
vmacro11529 Vaccinium macrocarpon HOM05D000455 ORTHO05D000434 6.1e-36 155.6 495 30.5
vmacro11528 Vaccinium macrocarpon HOM05D000455 ORTHO05D010375 8.2e-33 145.2 204 47.5
vmacro11342 Vaccinium macrocarpon HOM05D000455 ORTHO05D000434 2.2e-25 120.6 293 33.8
CSS0008760 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 1.8e-24 117.5 223 37.2
CSS0027820 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 1.8e-24 117.5 223 37.2
CSS0015680 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 5.9e-23 112.5 225 37.3
CSS0018542 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 5.9e-23 112.5 174 43.1
CSS0025475 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 3.8e-22 109.8 223 36.3
CSS0010178 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 5.0e-22 109.4 217 36.9
CSS0026143 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 6.5e-22 109.0 225 36.0
CSS0013811 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 8.5e-22 108.6 225 36.0
Actinidia22184 Actinidia chinensis HOM05D000455 ORTHO05D000434 1.2e-20 104.8 268 33.2
CSS0024415 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 3.6e-20 103.2 225 34.7
CSS0029762 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 5.1e-19 99.4 211 34.6
CSS0044995 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 5.1e-19 99.4 211 34.6
CSS0015781 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 6.7e-19 99.0 197 37.1
vmacro15446 Vaccinium macrocarpon HOM05D000455 ORTHO05D010375 1.1e-18 98.2 368 29.3
CSS0048685 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 1.8e-16 90.9 254 28.7
CSS0038214 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 3.1e-16 90.1 209 32.1
vmacro22559 Vaccinium macrocarpon HOM05D000455 ORTHO05D000434 2.0e-15 87.4 226 31.0
vmacro15447 Vaccinium macrocarpon HOM05D000455 ORTHO05D010375 2.2e-14 84.0 373 27.3
vmacro11426 Vaccinium macrocarpon HOM05D000455 ORTHO05D000434 8.5e-14 82.0 230 32.2
vmacro18354 Vaccinium macrocarpon HOM05D000455 ORTHO05D000434 8.5e-14 82.0 248 30.2
CSS0047654 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 1.1e-13 81.6 271 31.7
CSS0027396 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 2.5e-13 80.5 271 31.0
Cc06_g21980 Coffea canephora HOM05D000455 ORTHO05D000434 1.2e-12 78.2 203 28.1
CSS0048530 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 1.6e-12 77.8 240 30.0
CSS0041013 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 8.0e-12 75.5 254 26.8
CSS0019790 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 2.3e-11 73.9 281 28.5
Cc00_g10740 Coffea canephora HOM05D000455 ORTHO05D010375 2.3e-11 73.9 141 31.2
Cc06_g22030 Coffea canephora HOM05D000455 ORTHO05D010375 2.3e-11 73.9 141 31.2
CSS0039323 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 8.8e-11 72.0 254 27.2
CSS0040866 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 1.1e-10 71.6 235 27.7
Cc06_g21930 Coffea canephora HOM05D000455 ORTHO05D010375 1.1e-10 71.6 165 30.3
vmacro15456 Vaccinium macrocarpon HOM05D000455 ORTHO05D010375 1.1e-10 71.6 155 35.5
Hma1.2p1_0049F.1_g028210 Hydrangea macrophylla HOM05D000455 ORTHO05D010375 1.5e-10 71.2 197 28.4
CSS0006544 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 2.0e-10 70.9 210 31.4
CSS0032249 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 2.0e-10 70.9 205 29.8
Cc06_g22000 Coffea canephora HOM05D000455 ORTHO05D000434 2.6e-10 70.5 204 27.9
Cc06_g21870 Coffea canephora HOM05D000455 ORTHO05D000434 3.3e-10 70.1 141 31.2
CSS0023928 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 4.4e-10 69.7 218 28.4
Cc00_g29760 Coffea canephora HOM05D000455 ORTHO05D000434 4.4e-10 69.7 269 27.5
Dinv24849 Davidia involucrata HOM05D000455 ORTHO05D000434 4.4e-10 69.7 189 28.6
CSS0000650 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 7.5e-10 68.9 205 29.3
Cc06_g21940 Coffea canephora HOM05D000455 ORTHO05D010375 7.5e-10 68.9 191 30.9
Dinv24847 Davidia involucrata HOM05D000455 ORTHO05D000434 7.5e-10 68.9 169 33.1
Oeu041396.1 Olea europaea HOM05D000455 ORTHO05D000434 7.5e-10 68.9 174 29.9
Cc11_g02160 Coffea canephora HOM05D000455 ORTHO05D010375 9.7e-10 68.6 144 32.6
CSS0010287 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 1.7e-09 67.8 203 30.5
Dinv10484 Davidia involucrata HOM05D000455 ORTHO05D000434 1.7e-09 67.8 191 27.7
vmacro11541 Vaccinium macrocarpon HOM05D000112 ORTHO05D000564 1.7e-09 67.8 93 47.3
Cc00_g22160 Coffea canephora HOM05D000455 ORTHO05D000434 2.2e-09 67.4 141 31.2
A06p16630 Brassica napus HOM05D000455 ORTHO05D000434 2.8e-09 67.0 272 25.7
BraA06t24770Z Brassica rapa HOM05D000455 ORTHO05D000434 2.8e-09 67.0 272 25.7
Dinv11542 Davidia involucrata HOM05D000455 ORTHO05D000434 3.7e-09 66.6 178 28.7
Dinv37381 Davidia involucrata HOM05D000455 ORTHO05D010375 3.7e-09 66.6 170 28.2
Cc00_g35530 Coffea canephora HOM05D000455 ORTHO05D010375 4.8e-09 66.2 141 30.5
Cc11_g02140 Coffea canephora HOM05D000455 ORTHO05D000434 4.8e-09 66.2 141 30.5
Dinv34975 Davidia involucrata HOM05D000455 ORTHO05D000434 6.3e-09 65.9 235 26.0
Nitab4.5_0007956g0010 Nicotiana tabacum HOM05D000455 ORTHO05D000434 2.4e-08 63.9 296 25.0
HanXRQChr17g0537521 Helianthus annuus HOM05D000455 ORTHO05D000434 3.1e-08 63.5 228 28.1
MSTRG.21454 Avicennia marina HOM05D000455 ORTHO05D000434 4.1e-08 63.2 234 26.9
TAR375G0327 Trochodendron aralioides HOM05D000455 ORTHO05D000434 4.1e-08 63.2 113 38.9
Cc06_g21990 Coffea canephora HOM05D000455 ORTHO05D010375 5.3e-08 62.8 144 29.2
TAR629G0003 Trochodendron aralioides HOM05D000455 ORTHO05D000434 5.3e-08 62.8 113 38.9
Atru.chr9.1944 Acer truncatum HOM05D000455 ORTHO05D000434 7.0e-08 62.4 182 31.9
Cc07_g19820 Coffea canephora HOM05D000455 ORTHO05D000434 7.0e-08 62.4 191 25.1
Dinv13089 Davidia involucrata HOM05D000455 ORTHO05D000434 7.0e-08 62.4 182 29.7
MD06G1111900 Malus domestica HOM05D000455 ORTHO05D000434 7.0e-08 62.4 120 40.0
CSS0025147 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D010375 9.1e-08 62.0 246 27.2
Dinv10489 Davidia involucrata HOM05D000455 ORTHO05D000434 9.1e-08 62.0 273 25.6
Cc07_g19830 Coffea canephora HOM05D000455 ORTHO05D010375 1.2e-07 61.6 142 28.9
Dinv24844 Davidia involucrata HOM05D000455 ORTHO05D000434 1.6e-07 61.2 152 31.6
HanXRQChr06g0173111 Helianthus annuus HOM05D000455 ORTHO05D000434 1.6e-07 61.2 240 25.8
Manes.02G006700 Manihot esculenta HOM05D000455 ORTHO05D000434 1.6e-07 61.2 96 40.6
HanXRQChr06g0173011 Helianthus annuus HOM05D000455 ORTHO05D000434 2.0e-07 60.8 243 26.3
Manes.01G053000 Manihot esculenta HOM05D000455 ORTHO05D000434 2.0e-07 60.8 96 39.6
Peaxi162Scf00029g00287 Petunia axillaris HOM05D000455 ORTHO05D011453 2.0e-07 60.8 163 28.2
RcHm_v2.0_Chr7g0186181 Rosa chinensis HOM05D000455 ORTHO05D000434 2.0e-07 60.8 105 40.0
Dinv38771 Davidia involucrata HOM05D000455 ORTHO05D000434 2.7e-07 60.5 212 27.8
HanXRQChr06g0173041 Helianthus annuus HOM05D000455 ORTHO05D000434 2.7e-07 60.5 243 26.3
HanXRQChr06g0184111 Helianthus annuus HOM05D000455 ORTHO05D000434 2.7e-07 60.5 108 38.0
CSS0007334 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D022121 3.5e-07 60.1 182 28.6
Gohir.D08G124900 Gossypium hirsutum HOM05D000455 ORTHO05D000434 3.5e-07 60.1 96 38.5
Gorai.004G131700 Gossypium raimondii HOM05D000455 ORTHO05D000434 3.5e-07 60.1 96 38.5
HanXRQChr06g0173021 Helianthus annuus HOM05D000455 ORTHO05D000434 3.5e-07 60.1 243 26.3
Sabra01G0064300 Salix brachista HOM05D000455 ORTHO05D000434 3.5e-07 60.1 91 38.5
AT4G24020 Arabidopsis thaliana HOM05D000455 ORTHO05D000434 4.5e-07 59.7 132 34.1
BcaC05g25974 Brassica carinata HOM05D000455 ORTHO05D000434 4.5e-07 59.7 272 24.6
C05p19260 Brassica napus HOM05D000455 ORTHO05D000434 4.5e-07 59.7 272 24.6
BolC5t30627H Brassica oleracea HOM05D000455 ORTHO05D000434 4.5e-07 59.7 272 24.6
CSS0000073 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 4.5e-07 59.7 216 26.9
Carub.0002s0022 Capsella rubella HOM05D000455 ORTHO05D000434 4.5e-07 59.7 95 42.1
AUR62007012 Chenopodium quinoa HOM05D000455 ORTHO05D000434 4.5e-07 59.7 105 39.0
MBI06_g44138_MAGBIO Magnolia biondii HOM05D000455 ORTHO05D000434 4.5e-07 59.7 86 41.9
Medtr0022s0430 Medicago truncatula HOM05D000455 ORTHO05D000434 4.5e-07 59.7 297 25.3
THA.LOC104806445 Tarenaya hassleriana HOM05D000455 ORTHO05D000434 4.5e-07 59.7 116 35.3
BcaB03g14309 Brassica carinata HOM05D000455 ORTHO05D000434 5.9e-07 59.3 248 25.0
ECA238G2514 Erigeron canadensis HOM05D000455 ORTHO05D000434 5.9e-07 59.3 103 38.8
Lj8C207T2 Lonicera japonica HOM05D000455 ORTHO05D000434 5.9e-07 59.3 243 26.7
Nn1g00300 Nelumbo nucifera HOM05D000455 ORTHO05D000434 5.9e-07 59.3 115 32.2
THA.LOC104813049 Tarenaya hassleriana HOM05D000455 ORTHO05D000434 5.9e-07 59.3 165 32.1
BraA09t37109Z Brassica rapa HOM05D000455 ORTHO05D000434 7.7e-07 58.9 323 23.5
AUR62019876 Chenopodium quinoa HOM05D000455 ORTHO05D000434 7.7e-07 58.9 105 39.0
PSO063G2561 Papaver somniferum HOM05D000455 ORTHO05D000434 7.7e-07 58.9 94 38.3
PSO170G2314 Papaver somniferum HOM05D000455 ORTHO05D000434 7.7e-07 58.9 94 38.3
Peaxi162Scf00391g00424 Petunia axillaris HOM05D000455 ORTHO05D000434 7.7e-07 58.9 136 32.4
TPR.G34212 Trifolium pratense HOM05D000455 ORTHO05D000434 7.7e-07 58.9 99 38.4
GSVIVG01019600001 Vitis vinifera HOM05D000455 ORTHO05D000434 7.7e-07 58.9 336 22.6
EL10Ac5g12952 Beta vulgaris HOM05D000455 ORTHO05D000434 1.0e-06 58.5 96 39.6
CSS0046598 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 1.0e-06 58.5 106 36.8
Cc06_g21860 Coffea canephora HOM05D000455 ORTHO05D010375 1.0e-06 58.5 142 28.2
Thhalv10024328m.g Eutrema salsugineum HOM05D000455 ORTHO05D000434 1.0e-06 58.5 132 34.1
Gohir.A08G111800 Gossypium hirsutum HOM05D000455 ORTHO05D000434 1.0e-06 58.5 96 37.5
HanXRQChr14g0427451 Helianthus annuus HOM05D000455 ORTHO05D000434 1.0e-06 58.5 108 38.0
Lj8A204T63 Lonicera japonica HOM05D000455 ORTHO05D000434 1.0e-06 58.5 167 32.9
MD14G1133200 Malus domestica HOM05D000455 ORTHO05D000434 1.0e-06 58.5 137 34.3
PGSC0003DMG402032501 Solanum tuberosum HOM05D000455 ORTHO05D011453 1.3e-06 58.2 160 28.8
TWI38G0278 Tripterygium wilfordii HOM05D000455 ORTHO05D000434 1.3e-06 58.2 170 27.1
CiPaw.12G080700 Carya illinoinensis HOM05D000455 ORTHO05D000434 1.7e-06 57.8 100 38.0
COL.COLO4_10746 Corchorus olitorius HOM05D000455 ORTHO05D000434 1.7e-06 57.8 92 35.9
FAN08G0575 Fragaria x ananassa HOM05D000455 ORTHO05D000434 1.7e-06 57.8 105 39.0
Gohir.A02G095700 Gossypium hirsutum HOM05D000455 ORTHO05D000434 1.7e-06 57.8 72 44.4
Gorai.003G074300 Gossypium raimondii HOM05D000455 ORTHO05D000434 1.7e-06 57.8 72 44.4
AL7G29270 Arabidopsis lyrata HOM05D000455 ORTHO05D000434 2.2e-06 57.4 132 32.6
CAN.G322.7 Capsicum annuum HOM05D000455 ORTHO05D000434 2.2e-06 57.4 217 24.4
Cc04_g07990 Coffea canephora HOM05D000455 ORTHO05D000434 2.2e-06 57.4 196 27.6
Haze_09110 Corylus avellana HOM05D000455 ORTHO05D000434 2.2e-06 57.4 89 43.8
FAN13G2452 Fragaria x ananassa HOM05D000455 ORTHO05D000434 2.2e-06 57.4 105 38.1
HanXRQChr08g0213781 Helianthus annuus HOM05D000455 ORTHO05D000434 2.2e-06 57.4 289 27.0
Lsat_1_v5_gn_2_4641 Lactuca sativa HOM05D000455 ORTHO05D000434 2.2e-06 57.4 117 35.0
Potri.001G087900 Populus trichocarpa HOM05D000455 ORTHO05D000434 2.2e-06 57.4 94 37.2
Thecc.03G302500 Theobroma cacao HOM05D000455 ORTHO05D000434 2.2e-06 57.4 67 47.8
Aa31LG2G1520 Aethionema arabicum HOM05D000455 ORTHO05D000434 2.9e-06 57.0 67 47.8
FvH4_5g11570 Fragaria vesca HOM05D000455 ORTHO05D000434 2.9e-06 57.0 105 38.1
FAN18G2525 Fragaria x ananassa HOM05D000455 ORTHO05D000434 2.9e-06 57.0 105 38.1
FAN18G2932 Fragaria x ananassa HOM05D000455 ORTHO05D000434 2.9e-06 57.0 105 38.1
Sp1g18360 Schrenkiella parvula HOM05D000455 ORTHO05D000434 2.9e-06 57.0 284 23.2
Sp5g31480 Schrenkiella parvula HOM05D000455 ORTHO05D000434 2.9e-06 57.0 294 23.8
Sc01g0010440 Simmondsia chinensis HOM05D000455 ORTHO05D000434 2.9e-06 57.0 113 36.3
Ciclev10018744m.g Citrus clementina HOM05D000455 ORTHO05D000434 3.8e-06 56.6 65 49.2
Hma1.2p1_0359F.1_g135000 Hydrangea macrophylla HOM05D000455 ORTHO05D000434 3.8e-06 56.6 149 30.9
Peaxi162Scf00029g00319 Petunia axillaris HOM05D000455 ORTHO05D011453 3.8e-06 56.6 221 25.3
BcaNung05695 Brassica carinata HOM05D000455 ORTHO05D000434 5.0e-06 56.2 131 32.8
A07p41970 Brassica napus HOM05D000455 ORTHO05D000434 5.0e-06 56.2 289 24.2
DCAR_029869 Daucus carota HOM05D000455 ORTHO05D000434 5.0e-06 56.2 94 40.4
HanXRQChr07g0189401 Helianthus annuus HOM05D000455 ORTHO05D000434 5.0e-06 56.2 99 37.4
Solyc08g082750.3 Solanum lycopersicum HOM05D000455 ORTHO05D000434 5.0e-06 56.2 157 26.1
Actinidia15832 Actinidia chinensis HOM05D000455 ORTHO05D000434 6.5e-06 55.8 235 26.4
SalBow4G0297 Salvia bowleyana HOM05D000455 ORTHO05D012328 6.5e-06 55.8 164 28.7
CSS0025654 Camellia sinensis var. sinensis HOM05D000455 ORTHO05D000434 8.5e-06 55.5 49 55.1
Lj3A57G24 Lonicera japonica HOM05D000455 ORTHO05D010913 8.5e-06 55.5 247 23.5
Prupe.5G125000 Prunus persica HOM05D000455 ORTHO05D000434 8.5e-06 55.5 176 31.2
Solyc08g008410.3 Solanum lycopersicum HOM05D000455 ORTHO05D000434 8.5e-06 55.5 88 43.2
Sopen08g004270 Solanum pennellii HOM05D000455 ORTHO05D000434 8.5e-06 55.5 88 43.2
PGSC0003DMG401012256 Solanum tuberosum HOM05D000455 ORTHO05D000434 8.5e-06 55.5 157 27.4


User provided reference genes

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