Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 4.8e-73 277.7 138 100.0
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 4.8e-73 277.7 138 100.0
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 1.6e-31 139.8 157 52.9
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 1.6e-31 139.8 157 52.9
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 4.2e-29 131.7 156 49.4
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 3.6e-28 128.6 108 60.2
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 2.3e-27 125.9 154 46.8
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.3e-27 125.9 118 55.1
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 3.0e-27 125.6 162 45.7
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 8.9e-27 124.0 163 46.0
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 1.5e-26 123.2 152 45.4
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 5.7e-26 121.3 153 45.8
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 7.5e-26 120.9 150 48.7
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 2.9e-25 119.0 153 45.1
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 2.9e-25 119.0 152 46.7
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 3.7e-25 118.6 153 43.8
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 6.3e-25 117.9 150 46.7
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 8.3e-25 117.5 161 43.5
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 1.4e-24 116.7 154 46.1
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 1.8e-24 116.3 154 44.2
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 3.2e-24 115.5 150 46.0
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 4.1e-24 115.2 159 42.1
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 7.0e-24 114.4 158 39.9
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 9.2e-24 114.0 151 43.7
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 1.2e-23 113.6 154 44.8
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 1.2e-23 113.6 153 45.1
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 2.7e-23 112.5 155 45.2
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 2.7e-23 112.5 154 42.2
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 4.6e-23 111.7 154 43.5
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 4.6e-23 111.7 158 45.6
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 5.9e-23 111.3 161 40.4
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 5.9e-23 111.3 157 40.1
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 7.8e-23 110.9 154 42.9
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 1.3e-22 110.2 150 42.7
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 1.3e-22 110.2 163 42.9
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 1.7e-22 109.8 139 45.3
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 2.3e-22 109.4 153 41.8
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 2.9e-22 109.0 158 39.9
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 3.9e-22 108.6 151 43.0
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 3.9e-22 108.6 153 42.5
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 5.0e-22 108.2 156 43.6
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 5.0e-22 108.2 161 41.0
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 5.0e-22 108.2 154 41.6
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 5.0e-22 108.2 150 44.0
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 5.0e-22 108.2 154 40.3
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 6.6e-22 107.8 162 40.7
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 6.6e-22 107.8 148 43.9
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 6.6e-22 107.8 154 44.2
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 6.6e-22 107.8 148 43.9
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 8.6e-22 107.5 153 41.8
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 8.6e-22 107.5 153 41.8
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 8.6e-22 107.5 153 41.8
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 1.5e-21 106.7 154 42.2
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 1.5e-21 106.7 154 40.9
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 1.5e-21 106.7 147 42.9
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 1.9e-21 106.3 157 41.4
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 2.5e-21 105.9 151 41.7
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 3.3e-21 105.5 149 42.3
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 5.6e-21 104.8 156 42.3
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 5.6e-21 104.8 163 39.3
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 5.6e-21 104.8 155 42.6
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 7.3e-21 104.4 122 48.4
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 9.5e-21 104.0 151 42.4
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 1.2e-20 103.6 154 40.9
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.2e-20 103.6 114 52.6
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 1.2e-20 103.6 151 40.4
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 1.6e-20 103.2 153 39.2
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 2.1e-20 102.8 152 41.4
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 2.1e-20 102.8 145 42.8
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 2.8e-20 102.4 151 41.7
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 2.8e-20 102.4 154 40.9
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 3.6e-20 102.1 160 37.5
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 4.7e-20 101.7 170 37.6
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 6.1e-20 101.3 153 38.6
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 6.1e-20 101.3 154 40.3
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 8.0e-20 100.9 153 38.6
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 1.0e-19 100.5 150 40.0
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 1.0e-19 100.5 153 38.6
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 1.0e-19 100.5 153 38.6
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 1.0e-19 100.5 153 38.6
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 1.4e-19 100.1 149 39.6
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 1.4e-19 100.1 149 38.9
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 1.4e-19 100.1 149 38.9
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 1.4e-19 100.1 149 38.9
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 1.8e-19 99.8 148 41.2
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 1.8e-19 99.8 148 41.2
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 1.8e-19 99.8 149 40.3
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 2.3e-19 99.4 153 38.6
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.3e-19 99.4 140 43.6
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 3.1e-19 99.0 152 38.8
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 3.1e-19 99.0 150 40.0
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 3.1e-19 99.0 148 40.5
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 5.2e-19 98.2 151 41.7
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 5.2e-19 98.2 150 42.0
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 6.8e-19 97.8 149 38.9
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 6.8e-19 97.8 139 41.7
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 8.9e-19 97.4 148 40.5
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 1.2e-18 97.1 149 37.6
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 1.2e-18 97.1 149 37.6
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 1.2e-18 97.1 164 35.4
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 1.5e-18 96.7 150 38.0
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 1.5e-18 96.7 147 40.1
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 2.0e-18 96.3 149 38.9
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 7.5e-18 94.4 151 37.1
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 2.2e-17 92.8 151 36.4
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 2.2e-17 92.8 151 38.4
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 4.9e-17 91.7 154 36.4
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 6.4e-17 91.3 154 36.4
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.1e-16 90.5 134 45.5
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.1e-16 90.5 134 45.5
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 1.4e-16 90.1 140 40.0
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 1.9e-16 89.7 147 39.5
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 4.1e-16 88.6 149 36.2
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 5.4e-16 88.2 156 35.3
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 5.4e-16 88.2 156 35.3
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 5.4e-16 88.2 153 35.9
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 5.4e-16 88.2 153 35.9
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 2.0e-15 86.3 153 34.6
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 2.7e-15 85.9 153 35.9
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 4.6e-15 85.1 153 34.0
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 4.6e-15 85.1 153 34.0
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 4.6e-15 85.1 153 34.0
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 4.6e-15 85.1 153 34.0
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 4.6e-15 85.1 153 34.0
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 4.6e-15 85.1 209 31.6
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 7.8e-15 84.3 153 35.3
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 7.8e-15 84.3 148 36.5
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 1.7e-14 83.2 153 35.3
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 2.5e-13 79.3 123 38.2
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 4.3e-13 78.6 140 34.3
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 4.3e-13 78.6 141 34.0
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 9.5e-13 77.4 158 31.6
QL02p009653 Quercus lobata HOM05D004555 ORTHO05D005305 1.6e-12 76.6 49 73.5
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 1.4e-11 73.6 47 70.2
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 1.2e-10 70.5 44 72.7
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 3.4e-10 68.9 47 66.0
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 2.2e-09 66.2 153 30.7
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 4.9e-09 65.1 48 60.4
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 1.1e-08 63.9 47 66.0
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 4.1e-08 62.0 49 57.1
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 5.4e-08 61.6 48 58.3
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 9.2e-08 60.8 48 56.2
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 9.2e-08 60.8 46 63.0
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 1.6e-07 60.1 49 59.2
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 1.6e-07 60.1 48 52.1
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 2.7e-07 59.3 149 27.5
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 4.6e-07 58.5 48 52.1
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 1.7e-06 56.6 48 54.2
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 2.3e-06 56.2 48 50.0
CARHR263530 Cardamine hirsuta HOM05D004555 ORTHO05D005305 3.0e-06 55.8 49 57.1


User provided reference genes

Program Settings