Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro22817 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 0.0e+00 1330.5 656 100.0
vmacro11363 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 0.0e+00 1289.6 690 93.5
Rhsim02G0231700 Rhododendron simsii HOM05D004282 ORTHO05D006804 3.7e-280 968.0 667 75.7
Dinv37635 Davidia involucrata HOM05D004282 ORTHO05D006804 9.1e-263 910.2 666 71.6
CSS0007959 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 3.2e-260 901.7 666 71.2
CSS0014359 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 3.2e-260 901.7 666 71.2
Actinidia02002 Actinidia chinensis HOM05D004282 ORTHO05D006804 2.0e-257 892.5 666 70.6
Hma1.2p1_0209F.1_g088780 Hydrangea macrophylla HOM05D004282 ORTHO05D006804 2.9e-253 878.6 665 69.8
Lj8A221T67 Lonicera japonica HOM05D004282 ORTHO05D006804 3.8e-253 878.2 667 69.7
DCAR_006738 Daucus carota HOM05D004282 ORTHO05D006804 1.1e-252 876.7 666 69.8
DCAR_006739 Daucus carota HOM05D004282 ORTHO05D006804 1.1e-252 876.7 666 69.8
TAR375G0364 Trochodendron aralioides HOM05D004282 ORTHO05D006804 7.2e-252 874.0 666 68.8
Duzib084G1154 Durio zibethinus HOM05D004282 ORTHO05D006804 1.6e-251 872.8 666 68.3
COL.COLO4_34472 Corchorus olitorius HOM05D004282 ORTHO05D006804 2.7e-251 872.1 666 68.0
MD06G1084500 Malus domestica HOM05D004282 ORTHO05D006804 6.1e-251 870.9 666 68.0
MD14G1105600 Malus domestica HOM05D004282 ORTHO05D006804 1.8e-250 869.4 666 67.7
TAR374G0019 Trochodendron aralioides HOM05D004282 ORTHO05D006804 3.0e-250 868.6 666 68.3
DCAR_008399 Daucus carota HOM05D004282 ORTHO05D006804 3.9e-250 868.2 664 69.3
Duzib068G0684 Durio zibethinus HOM05D004282 ORTHO05D006804 5.2e-250 867.8 666 67.7
Hund14799 Selenicereus undatus HOM05D004282 ORTHO05D006804 8.8e-250 867.1 671 67.7
Thecc.03G279500 Theobroma cacao HOM05D004282 ORTHO05D006804 7.4e-249 864.0 666 67.3
ClCG01G002660 Citrullus lanatus HOM05D004282 ORTHO05D006804 9.7e-249 863.6 666 67.4
Sc01g0009620 Simmondsia chinensis HOM05D004282 ORTHO05D006804 8.2e-248 860.5 666 67.7
Prupe.5G100800 Prunus persica HOM05D004282 ORTHO05D006804 1.1e-247 860.1 666 67.6
Nn6g33428 Nelumbo nucifera HOM05D004282 ORTHO05D006804 1.8e-247 859.4 666 67.7
MELO3C005680.2 Cucumis melo HOM05D004282 ORTHO05D006804 4.1e-247 858.2 666 67.0
HanXRQChr13g0394231 Helianthus annuus HOM05D004282 ORTHO05D006804 4.1e-247 858.2 667 67.0
CsaV3_5G002770 Cucumis sativus L. HOM05D004282 ORTHO05D006804 9.1e-247 857.1 666 66.8
PGR042G2758 Punica granatum HOM05D004282 ORTHO05D006804 1.6e-246 856.3 666 66.5
QL12p032840 Quercus lobata HOM05D004282 ORTHO05D006804 1.6e-246 856.3 665 66.9
Gohir.D08G201400 Gossypium hirsutum HOM05D004282 ORTHO05D006804 2.6e-246 855.5 666 66.7
Aqoxy7G00313 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 5.9e-246 854.4 666 66.8
Gorai.003G158400 Gossypium raimondii HOM05D004282 ORTHO05D006804 1.0e-245 853.6 666 66.5
Gohir.A03G016700 Gossypium hirsutum HOM05D004282 ORTHO05D006804 2.9e-245 852.0 666 66.5
Potri.003G128200 Populus trichocarpa HOM05D004282 ORTHO05D006804 2.9e-245 852.0 666 66.5
Cfa012224 Carpinus fangiana HOM05D004282 ORTHO05D006804 3.8e-245 851.7 668 67.5
Eucgr.E00626 Eucalyptus grandis HOM05D004282 ORTHO05D006804 5.0e-245 851.3 666 66.4
Aqoxy2G03117 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 6.5e-245 850.9 667 67.0
Gohir.D03G151200 Gossypium hirsutum HOM05D004282 ORTHO05D006804 1.1e-244 850.1 666 66.2
Manes.02G019600 Manihot esculenta HOM05D004282 ORTHO05D006804 1.5e-244 849.7 666 66.4
Gorai.004G212300 Gossypium raimondii HOM05D004282 ORTHO05D006804 2.7e-243 845.5 659 66.3
Lsat_1_v5_gn_6_6601 Lactuca sativa HOM05D004282 ORTHO05D006804 3.6e-243 845.1 667 66.9
Lalb_Chr05g0224721 Lupinus albus HOM05D004282 ORTHO05D006804 4.7e-243 844.7 666 65.6
RcHm_v2.0_Chr7g0219471 Rosa chinensis HOM05D004282 ORTHO05D006804 4.7e-243 844.7 666 65.9
CiPaw.11G134600 Carya illinoinensis HOM05D004282 ORTHO05D006804 6.1e-243 844.3 668 66.8
Sed0021454 Sechium edule HOM05D004282 ORTHO05D006804 8.0e-243 844.0 666 65.8
Sabra03G0091200 Salix brachista HOM05D004282 ORTHO05D006804 4.0e-242 841.6 666 65.9
FvH4_5g27720 Fragaria vesca HOM05D004282 ORTHO05D006804 8.8e-242 840.5 666 65.5
Lsat_1_v5_gn_3_6581 Lactuca sativa HOM05D004282 ORTHO05D006804 1.5e-241 839.7 667 65.7
FAN18G3468 Fragaria x ananassa HOM05D004282 ORTHO05D006804 2.6e-241 839.0 673 64.9
Manes.08G013300 Manihot esculenta HOM05D004282 ORTHO05D006804 4.4e-241 838.2 660 66.5
TPR.G12833 Trifolium pratense HOM05D004282 ORTHO05D006804 4.4e-241 838.2 666 65.2
FAN08G1277 Fragaria x ananassa HOM05D004282 ORTHO05D006804 5.7e-241 837.8 666 65.3
arahy.Tifrunner.gnm1.ann1.G1AAHV Arachis hypogaea HOM05D004282 ORTHO05D006804 7.5e-241 837.4 666 66.1
Ca_17527_v3 Cicer arietinum L. HOM05D004282 ORTHO05D006804 7.5e-241 837.4 666 65.3
Glyma.05G208400 Glycine max HOM05D004282 ORTHO05D006804 9.7e-241 837.0 666 65.6
Cc08_g14800 Coffea canephora HOM05D004282 ORTHO05D006804 2.2e-240 835.9 666 66.2
VMungo0251G3615 Vigna mungo HOM05D004282 ORTHO05D006804 3.7e-240 835.1 666 65.3
FAN04G0421 Fragaria x ananassa HOM05D004282 ORTHO05D006804 8.2e-240 833.9 666 65.2
FAN13G2512 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.4e-239 833.2 666 64.9
HanXRQChr06g0165861 Helianthus annuus HOM05D004282 ORTHO05D006804 1.8e-239 832.8 665 64.8
PSO782G4766 Papaver somniferum HOM05D004282 ORTHO05D006804 2.4e-239 832.4 664 65.5
arahy.Tifrunner.gnm1.ann1.4VFV1G Arachis hypogaea HOM05D004282 ORTHO05D006804 3.1e-239 832.0 666 65.5
Lj4g0008271 Lotus japonicus HOM05D004282 ORTHO05D006804 3.1e-239 832.0 666 64.9
Phvul.002G290100 Phaseolus vulgaris HOM05D004282 ORTHO05D006804 4.1e-239 831.6 666 65.2
Sopen08g029450 Solanum pennellii HOM05D004282 ORTHO05D006804 5.3e-239 831.2 668 65.1
Atru.chr9.2181 Acer truncatum HOM05D004282 ORTHO05D006804 1.2e-238 830.1 657 65.3
PGSC0003DMG400012205 Solanum tuberosum HOM05D004282 ORTHO05D006804 1.2e-238 830.1 668 65.1
PSO478G3502 Papaver somniferum HOM05D004282 ORTHO05D006804 1.6e-238 829.7 664 65.2
Medtr8g098325 Medicago truncatula HOM05D004282 ORTHO05D006804 2.7e-238 828.9 666 64.0
Solyc08g081150.4 Solanum lycopersicum HOM05D004282 ORTHO05D006804 1.0e-237 827.0 668 64.8
Ciclev10019676m.g Citrus clementina HOM05D004282 ORTHO05D006804 2.9e-237 825.5 657 65.9
TWI81G0763 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 5.0e-237 824.7 666 64.9
MSTRG.11981 Avicennia marina HOM05D004282 ORTHO05D006804 1.5e-236 823.2 666 65.0
CAN.G774.52 Capsicum annuum HOM05D004282 ORTHO05D006804 1.5e-236 823.2 658 65.2
Oeu019186.1 Olea europaea HOM05D004282 ORTHO05D006804 4.2e-236 821.6 666 63.7
ECA246G1826 Erigeron canadensis HOM05D004282 ORTHO05D006804 7.2e-236 820.8 668 63.8
Peaxi162Scf00119g00947 Petunia axillaris HOM05D004282 ORTHO05D006804 1.4e-234 816.6 664 64.6
THA.LOC104809396 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 1.4e-234 816.6 666 63.8
EL10Ac2g04411 Beta vulgaris HOM05D004282 ORTHO05D006804 1.8e-234 816.2 667 64.3
Psat7g032640 Pisum sativum HOM05D004282 ORTHO05D006804 3.0e-234 815.5 666 63.4
AUR62009455 Chenopodium quinoa HOM05D004282 ORTHO05D006804 5.2e-234 814.7 667 64.6
Ah.10g038320 Amaranthus hybridus HOM05D004282 ORTHO05D006804 1.5e-233 813.1 667 64.5
CANSAT21G1770 Cannabis sativa HOM05D004282 ORTHO05D006804 1.5e-233 813.1 666 63.8
AUR62023137 Chenopodium quinoa HOM05D004282 ORTHO05D006804 1.5e-233 813.1 667 64.3
TWI60G0060 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 1.5e-233 813.1 666 64.3
THA.LOC104817993 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 7.5e-233 810.8 662 63.7
AL2G11570 Arabidopsis lyrata HOM05D004282 ORTHO05D006804 1.1e-231 807.0 666 63.2
Migut.A00734 Erythranthe guttata HOM05D004282 ORTHO05D006804 1.1e-231 807.0 666 63.4
CARHR047680 Cardamine hirsuta HOM05D004282 ORTHO05D006804 1.4e-231 806.6 666 63.2
Carub.0002s0119 Capsella rubella HOM05D004282 ORTHO05D006804 3.1e-231 805.4 666 63.4
Nitab4.5_0001615g0080 Nicotiana tabacum HOM05D004282 ORTHO05D006804 4.1e-231 805.1 689 62.8
Sp2g01000 Schrenkiella parvula HOM05D004282 ORTHO05D006804 7.0e-231 804.3 666 63.2
Thhalv10023408m.g Eutrema salsugineum HOM05D004282 ORTHO05D006804 9.1e-231 803.9 666 63.1
C09p18660 Brassica napus HOM05D004282 ORTHO05D006804 1.2e-230 803.5 667 63.3
Nitab4.5_0000678g0110 Nicotiana tabacum HOM05D004282 ORTHO05D006804 1.2e-230 803.5 689 62.3
AT1G63660 Arabidopsis thaliana HOM05D004282 ORTHO05D006804 1.6e-230 803.1 666 62.9
ECA233G0272 Erigeron canadensis HOM05D004282 ORTHO05D006804 1.6e-230 803.1 667 63.7
Aa31LG2G870 Aethionema arabicum HOM05D004282 ORTHO05D006804 3.3e-228 795.4 666 62.3
BolC9t54762H Brassica oleracea HOM05D004282 ORTHO05D006804 4.7e-227 791.6 667 62.8
GSVIVG01019748001 Vitis vinifera HOM05D004282 ORTHO05D006804 1.0e-226 790.4 666 64.4
SGA_v2.0_scaffold173G39175 Striga asiatica HOM05D004282 ORTHO05D006804 1.4e-226 790.0 667 62.2
A09p15390 Brassica napus HOM05D004282 ORTHO05D006804 2.3e-226 789.3 666 62.3
BraA09t37181Z Brassica rapa HOM05D004282 ORTHO05D006804 3.0e-226 788.9 666 62.3
SHI07141 Sapria himalayana HOM05D004282 ORTHO05D006804 8.9e-226 787.3 660 61.7
unitig_578.g16628 Utricularia gibba HOM05D004282 ORTHO05D006804 1.5e-225 786.6 666 62.5
Os08g0326600 Oryza sativa ssp. japonica HOM05D004282 ORTHO05D006804 6.3e-224 781.2 659 60.8
Gohir.A08G182900 Gossypium hirsutum HOM05D004282 ORTHO05D006804 4.5e-222 775.0 623 65.5
MBI17_g24637_MAGBIO Magnolia biondii HOM05D004282 ORTHO05D006804 4.5e-222 775.0 658 61.7
Zm00001eb434370 Zea mays HOM05D004282 ORTHO05D006804 2.5e-220 769.2 659 59.9
Haze_08786 Corylus avellana HOM05D004282 ORTHO05D006804 3.3e-220 768.8 627 65.4
Glyma.08G015000 Glycine max HOM05D004282 ORTHO05D006804 7.5e-217 757.7 625 64.2
Oeu009150.1 Olea europaea HOM05D004282 ORTHO05D006804 3.7e-216 755.4 666 60.2
ATR1101G056 Amborella trichopoda HOM05D004282 ORTHO05D006804 6.2e-211 738.0 687 57.1
Lj2A0T39 Lonicera japonica HOM05D004282 ORTHO05D006804 2.1e-203 713.0 667 60.1
Pp3c8_7320 Physcomitrium patens HOM05D004282 ORTHO05D006804 8.9e-202 707.6 662 55.0
AagrBONN_evm.TU.Sc2ySwM_344.3490 Anthoceros agrestis HOM05D004282 ORTHO05D006804 1.7e-197 693.3 658 54.9
Mapoly0002s0326 Marchantia polymorpha HOM05D004282 ORTHO05D006804 1.7e-197 693.3 664 54.8
CBR_g48399 Chara braunii HOM05D004282 ORTHO05D006804 8.4e-192 674.5 657 54.0
Lj2A185G23 Lonicera japonica HOM05D004282 ORTHO05D006804 1.2e-190 670.6 572 64.0
SMO116G0368 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 2.7e-190 669.5 666 51.8
MCO08G312 Micromonas commoda HOM05D004282 ORTHO05D006804 1.5e-180 637.1 655 50.2
CDE06G0245 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 2.2e-176 623.2 529 61.4
BcaNung07334 Brassica carinata HOM05D004282 ORTHO05D006804 3.2e-175 619.4 353 83.9
Cre02.g092900 Chlamydomonas reinhardtii HOM05D004282 ORTHO05D006804 5.4e-175 618.6 660 49.7
PRCOL_00000667 Prasinoderma coloniale HOM05D004282 ORTHO05D006804 3.7e-171 605.9 654 49.5
HPP92_014989 Vanilla planifolia HOM05D004282 ORTHO05D006804 6.2e-171 605.1 621 52.0
CDE06G1269 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 2.9e-160 569.7 619 52.7
Sabra01G0078200 Salix brachista HOM05D004282 ORTHO05D006804 4.1e-154 549.3 725 49.2
CiPaw.12G092600 Carya illinoinensis HOM05D004282 ORTHO05D006804 6.3e-147 525.4 553 53.9
SEGI_10668 Sequoiadendron giganteum HOM05D004282 ORTHO05D006804 2.0e-121 440.7 312 70.8
Cpa.g.c40776 Carica papaya HOM05D004282 ORTHO05D006804 3.8e-112 409.8 430 53.7
Cfa023610 Carpinus fangiana HOM05D004282 ORTHO05D006804 3.3e-111 406.8 666 39.8
SMO165G0029 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 3.3e-103 380.2 659 37.9
CDE02G0075 Ceratophyllum demersum HOM05D004282 ORTHO05D021217 6.8e-101 372.5 262 69.8
Pp3c3_31480 Physcomitrium patens HOM05D004282 ORTHO05D006804 2.5e-87 327.4 535 38.9
Actinidia14566 Actinidia chinensis HOM05D004282 ORTHO05D017169 7.1e-74 282.7 148 93.2
Cpa.g.sc74.54 Carica papaya HOM05D004282 ORTHO05D022242 8.7e-72 275.8 189 72.5
ECA233G3991 Erigeron canadensis HOM05D004282 ORTHO05D006804 1.0e-51 209.1 148 67.6
CDE02G2749 Ceratophyllum demersum HOM05D004282 ORTHO05D022242 1.1e-42 179.1 148 62.8
GSVIVG01010145001 Vitis vinifera HOM05D004282 ORTHO05D021217 1.9e-39 168.3 95 84.2
QL09p052209 Quercus lobata HOM05D004282 ORTHO05D022242 5.9e-36 156.8 104 74.0
CANSAT64G0187 Cannabis sativa HOM05D004282 ORTHO05D006804 3.6e-33 147.5 103 69.9
ATR0680G421 Amborella trichopoda HOM05D004282 ORTHO05D021217 1.4e-32 145.6 98 73.5
ATR0680G380 Amborella trichopoda HOM05D004282 ORTHO05D006804 3.2e-26 124.4 76 73.7
TAR633G2425 Trochodendron aralioides HOM05D004282 ORTHO05D022242 1.1e-21 109.4 97 63.9
Cc06_g21260 Coffea canephora HOM05D004282 ORTHO05D017169 7.2e-18 96.7 46 95.7
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 1.0e-16 92.8 109 48.6
Dinv38937 Davidia involucrata HOM05D000151 ORTHO05D000074 5.3e-13 80.5 45 84.4
VMungo0464G0647 Vigna mungo HOM05D004282 ORTHO05D021217 1.3e-11 75.9 44 81.8
VMungo0540G0566 Vigna mungo HOM05D004282 ORTHO05D021217 1.3e-11 75.9 44 81.8
RcHm_v2.0_Chr1g0321151 Rosa chinensis HOM05D004282 ORTHO05D022242 2.5e-10 71.6 48 75.0
A09p35740 Brassica napus HOM05D004282 ORTHO05D017169 9.4e-10 69.7 41 80.5
A09p59280 Brassica napus HOM05D004282 ORTHO05D017169 9.4e-10 69.7 41 80.5
BraA09t41310Z Brassica rapa HOM05D004282 ORTHO05D017169 9.4e-10 69.7 41 80.5
RcHm_v2.0_Chr7g0219111 Rosa chinensis HOM05D004282 ORTHO05D022242 2.7e-09 68.2 83 54.2
RcHm_v2.0_Chr1g0356411 Rosa chinensis HOM05D004282 ORTHO05D341678 8.8e-08 63.2 55 61.8
A03p47680 Brassica napus HOM05D004282 ORTHO05D017169 1.2e-07 62.8 38 78.9
BraA09t37854Z Brassica rapa HOM05D004282 ORTHO05D017169 1.2e-07 62.8 38 78.9
SGA_v2.0_scaffold43G16453 Striga asiatica HOM05D004282 ORTHO05D404191 1.7e-06 58.9 41 65.9


User provided reference genes

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