Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro22687 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 0.0e+00 2064.7 1103 100.0
vmacro17219 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 0.0e+00 1863.6 1080 90.3
Rhsim05G0022800 Rhododendron simsii HOM05D004666 ORTHO05D005822 0.0e+00 1390.6 1067 69.7
Dinv21227 Davidia involucrata HOM05D004666 ORTHO05D005822 0.0e+00 1129.4 1077 56.9
TAR365G1212 Trochodendron aralioides HOM05D004666 ORTHO05D005822 4.9e-261 905.2 1084 48.1
QL07p039593 Quercus lobata HOM05D004666 ORTHO05D005822 1.0e-250 870.9 995 49.4
CiPaw.09G011000 Carya illinoinensis HOM05D004666 ORTHO05D005822 5.1e-250 868.6 1023 50.2
Cfa002067 Carpinus fangiana HOM05D004666 ORTHO05D005822 2.8e-248 862.8 1071 48.4
GSVIVG01032069001 Vitis vinifera HOM05D004666 ORTHO05D005822 4.5e-238 828.9 1026 47.5
Thecc.01G223300 Theobroma cacao HOM05D004666 ORTHO05D005822 1.0e-229 801.2 1024 46.9
COL.COLO4_15658 Corchorus olitorius HOM05D004666 ORTHO05D005822 1.0e-226 791.2 1160 40.7
Cc06_g05530 Coffea canephora HOM05D004666 ORTHO05D005822 1.1e-223 781.2 1114 44.9
Gorai.001G233200 Gossypium raimondii HOM05D004666 ORTHO05D005822 3.1e-223 779.6 1048 43.2
Manes.13G012000 Manihot esculenta HOM05D004666 ORTHO05D005822 1.2e-222 777.7 1041 44.7
Oeu040521.1 Olea europaea HOM05D004666 ORTHO05D005822 4.5e-222 775.8 982 47.4
Gohir.A07G200500 Gossypium hirsutum HOM05D004666 ORTHO05D005822 2.5e-220 770.0 1044 43.1
TWI34G1071 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 2.1e-219 766.9 1051 44.7
Potri.008G200900 Populus trichocarpa HOM05D004666 ORTHO05D005822 7.9e-219 765.0 1082 41.4
Gohir.D07G206800 Gossypium hirsutum HOM05D004666 ORTHO05D005822 6.7e-218 761.9 1048 42.7
Lj2C133G10 Lonicera japonica HOM05D004666 ORTHO05D005822 2.1e-211 740.3 1204 42.5
CANSAT54G2995 Cannabis sativa HOM05D004666 ORTHO05D005822 1.7e-208 730.7 984 42.8
PSO384G1605 Papaver somniferum HOM05D004666 ORTHO05D005822 1.2e-206 724.5 1208 40.1
EL10Ac7g16949 Beta vulgaris HOM05D004666 ORTHO05D005822 1.0e-205 721.5 1116 39.3
Prupe.7G114200 Prunus persica HOM05D004666 ORTHO05D005822 5.0e-205 719.2 1154 41.1
PSO425G0050 Papaver somniferum HOM05D004666 ORTHO05D005822 2.5e-204 716.8 1220 40.1
Lsat_1_v5_gn_1_48480 Lactuca sativa HOM05D004666 ORTHO05D005822 3.2e-204 716.5 972 43.0
Atru.chr8.1588 Acer truncatum HOM05D004666 ORTHO05D005822 3.6e-203 713.0 894 47.5
DCAR_013376 Daucus carota HOM05D004666 ORTHO05D005822 3.9e-202 709.5 1123 39.5
Sp1g17360 Schrenkiella parvula HOM05D004666 ORTHO05D005822 4.4e-201 706.1 989 42.0
BolC8t49572H Brassica oleracea HOM05D004666 ORTHO05D005822 6.3e-200 702.2 984 43.3
Aqoxy3G00997 Aquilegia oxysepala HOM05D004666 ORTHO05D005822 1.1e-199 701.4 1092 41.9
THA.LOC104827512 Tarenaya hassleriana HOM05D004666 ORTHO05D005822 1.1e-199 701.4 1007 44.0
HanXRQChr01g0029141 Helianthus annuus HOM05D004666 ORTHO05D005822 5.3e-199 699.1 1082 42.1
Nitab4.5_0000794g0050 Nicotiana tabacum HOM05D004666 ORTHO05D005822 3.5e-198 696.4 1039 41.3
A06p15660 Brassica napus HOM05D004666 ORTHO05D005822 1.3e-197 694.5 996 42.2
BraA06t24675Z Brassica rapa HOM05D004666 ORTHO05D005822 1.3e-197 694.5 996 42.2
A08p29790 Brassica napus HOM05D004666 ORTHO05D005822 5.0e-197 692.6 985 43.2
FvH4_6g18260 Fragaria vesca HOM05D004666 ORTHO05D005822 5.0e-197 692.6 1191 37.4
RcHm_v2.0_Chr4g0409331 Rosa chinensis HOM05D004666 ORTHO05D005822 4.2e-196 689.5 1271 36.2
BraA08t34913Z Brassica rapa HOM05D004666 ORTHO05D005822 7.2e-196 688.7 984 42.8
Sed0022470 Sechium edule HOM05D004666 ORTHO05D005822 2.1e-195 687.2 1039 40.3
C08p19490 Brassica napus HOM05D004666 ORTHO05D005822 4.7e-195 686.0 983 42.9
AT1G19485 Arabidopsis thaliana HOM05D004666 ORTHO05D005822 6.1e-195 685.6 985 42.0
Carub.0001s1905 Capsella rubella HOM05D004666 ORTHO05D005822 1.8e-194 684.1 993 42.9
C05p17890 Brassica napus HOM05D004666 ORTHO05D005822 8.8e-194 681.8 976 41.6
BolC5t30496H Brassica oleracea HOM05D004666 ORTHO05D005822 8.8e-194 681.8 993 42.1
Hund26220 Selenicereus undatus HOM05D004666 ORTHO05D005822 1.2e-193 681.4 1294 35.9
TWI73G1120 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 1.2e-193 681.4 1025 42.7
Thhalv10006802m.g Eutrema salsugineum HOM05D004666 ORTHO05D005822 1.5e-193 681.0 982 41.8
MELO3C009457.2 Cucumis melo HOM05D004666 ORTHO05D005822 2.0e-193 680.6 1030 39.2
BcaB03g12912 Brassica carinata HOM05D004666 ORTHO05D005822 2.6e-193 680.2 968 41.8
CARHR020050 Cardamine hirsuta HOM05D004666 ORTHO05D005822 2.8e-192 676.8 1007 40.3
AUR62033523 Chenopodium quinoa HOM05D004666 ORTHO05D005822 7.0e-191 672.2 1135 37.7
MD09G1081300 Malus domestica HOM05D004666 ORTHO05D005822 7.0e-191 672.2 1127 39.2
CsaV3_3G037120 Cucumis sativus L. HOM05D004666 ORTHO05D005822 2.7e-190 670.2 1062 38.9
AL1G32230 Arabidopsis lyrata HOM05D004666 ORTHO05D005822 1.0e-189 668.3 715 51.3
Aa31LG7G4140 Aethionema arabicum HOM05D004666 ORTHO05D005822 5.0e-189 666.0 1023 40.5
MD12G1022600 Malus domestica HOM05D004666 ORTHO05D005822 1.2e-187 661.4 1104 39.8
Medtr1g060580 Medicago truncatula HOM05D004666 ORTHO05D005822 2.7e-187 660.2 1070 39.9
arahy.Tifrunner.gnm1.ann1.WFL2XE Arachis hypogaea HOM05D004666 ORTHO05D005822 6.8e-186 655.6 1116 37.6
arahy.Tifrunner.gnm1.ann1.G8H5C8 Arachis hypogaea HOM05D004666 ORTHO05D005822 3.4e-185 653.3 1140 36.8
arahy.Tifrunner.gnm1.ann1.T4KAXF Arachis hypogaea HOM05D004666 ORTHO05D005822 9.8e-185 651.7 1143 37.1
Solyc09g009710.4 Solanum lycopersicum HOM05D004666 ORTHO05D005822 7.0e-183 645.6 1049 39.4
Lalb_Chr02g0155381 Lupinus albus HOM05D004666 ORTHO05D005822 1.2e-182 644.8 1160 36.6
Sopen09g004490 Solanum pennellii HOM05D004666 ORTHO05D005822 2.0e-182 644.0 1091 38.2
FvH4_7g02500 Fragaria vesca HOM05D004666 ORTHO05D005822 7.7e-182 642.1 1181 35.9
Nitab4.5_0009916g0020 Nicotiana tabacum HOM05D004666 ORTHO05D005822 1.7e-181 641.0 1064 38.9
ClCG10G019140 Citrullus lanatus HOM05D004666 ORTHO05D005822 5.0e-181 639.4 1066 39.1
Glyma.10G068100 Glycine max HOM05D004666 ORTHO05D005822 1.2e-179 634.8 1229 34.5
Ca_26672_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 2.1e-179 634.0 1104 37.1
Ca_30723_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 2.1e-179 634.0 1104 37.1
Migut.J00966 Erythranthe guttata HOM05D004666 ORTHO05D005822 2.3e-178 630.6 990 41.8
PGR142G0825 Punica granatum HOM05D004666 ORTHO05D005822 8.8e-178 628.6 1060 40.4
TPR.G35431 Trifolium pratense HOM05D004666 ORTHO05D005822 1.5e-177 627.9 1110 37.7
Phvul.011G176600 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 2.2e-176 624.0 1208 37.6
MBI17_g35786_MAGBIO Magnolia biondii HOM05D004666 ORTHO05D005822 3.7e-176 623.2 977 39.4
Haze_19573 Corylus avellana HOM05D004666 ORTHO05D005822 2.0e-174 617.5 745 49.0
ECA248G3102 Erigeron canadensis HOM05D004666 ORTHO05D005822 3.5e-174 616.7 1212 34.8
RcHm_v2.0_Chr3g0472691 Rosa chinensis HOM05D004666 ORTHO05D005822 5.9e-174 615.9 653 50.5
Ciclev10011197m.g Citrus clementina HOM05D004666 ORTHO05D005822 7.8e-174 615.5 880 43.3
Psat6g082920 Pisum sativum HOM05D004666 ORTHO05D005822 8.6e-173 612.1 1121 37.6
Sc02g0001000 Simmondsia chinensis HOM05D004666 ORTHO05D005822 1.1e-172 611.7 1002 39.6
FAN06G2408 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.9e-172 610.9 1189 35.2
SGA_v2.0_scaffold147G36363 Striga asiatica HOM05D004666 ORTHO05D005822 4.3e-172 609.8 1033 39.6
Lj5g0013478 Lotus japonicus HOM05D004666 ORTHO05D005822 5.6e-172 609.4 1044 38.5
Peaxi162Scf00015g00639 Petunia axillaris HOM05D004666 ORTHO05D005822 6.8e-170 602.4 1082 39.6
Phvul.007G229800 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 8.9e-170 602.1 1278 35.8
Ah.08g210700 Amaranthus hybridus HOM05D004666 ORTHO05D005822 4.1e-167 593.2 1060 38.1
arahy.Tifrunner.gnm1.ann1.LSN657 Arachis hypogaea HOM05D004666 ORTHO05D005822 1.0e-165 588.6 1116 35.4
SalBow3G3865 Salvia bowleyana HOM05D004666 ORTHO05D005822 2.5e-164 583.9 1074 37.2
Lj5g0018797 Lotus japonicus HOM05D004666 ORTHO05D005822 9.5e-164 582.0 1054 37.3
FAN03G3209 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.1e-163 580.9 1245 33.7
Sed0014063 Sechium edule HOM05D004666 ORTHO05D005822 2.1e-163 580.9 1240 35.2
VMungo0720G2175 Vigna mungo HOM05D004666 ORTHO05D005822 2.8e-163 580.5 1343 31.9
Duzib114G0569 Durio zibethinus HOM05D004666 ORTHO05D005822 4.0e-162 576.6 976 39.9
ECA248G2596 Erigeron canadensis HOM05D004666 ORTHO05D005822 5.8e-161 572.8 1232 34.3
Potri.006G036601 Populus trichocarpa HOM05D004666 ORTHO05D005822 1.0e-157 562.0 655 47.9
Nn2g14084 Nelumbo nucifera HOM05D004666 ORTHO05D005822 1.3e-152 545.0 843 41.3
Peaxi162Scf00036g00125 Petunia axillaris HOM05D004666 ORTHO05D005822 5.1e-149 533.1 843 41.6
HPP92_015079 Vanilla planifolia HOM05D004666 ORTHO05D005822 3.4e-145 520.4 479 54.1
AUR62028568 Chenopodium quinoa HOM05D004666 ORTHO05D005822 1.4e-143 515.0 680 43.7
FAN02G3237 Fragaria x ananassa HOM05D004666 ORTHO05D005822 4.6e-142 510.0 1005 34.4
unitig_749.g14294 Utricularia gibba HOM05D004666 ORTHO05D005822 5.8e-137 493.0 973 36.9
CDE08G1659 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 1.6e-131 474.9 700 38.7
Zm00001eb147330 Zea mays HOM05D004666 ORTHO05D005822 3.0e-125 454.1 547 43.9
FAN05G5602 Fragaria x ananassa HOM05D004666 ORTHO05D005822 4.5e-121 440.3 1021 32.4
Os01g0858000 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 3.3e-116 424.1 321 59.8
Cpa.g.sc5.49 Carica papaya HOM05D004666 ORTHO05D005822 1.6e-115 421.8 313 63.6
Eucgr.K02035 Eucalyptus grandis HOM05D004666 ORTHO05D005822 1.6e-115 421.8 317 62.1
Sabra08G0160300 Salix brachista HOM05D004666 ORTHO05D005822 1.4e-114 418.7 781 35.0
Rhsim09G0020300 Rhododendron simsii HOM05D004666 ORTHO05D005822 5.8e-113 413.3 403 59.1
Sabra12G0045300 Salix brachista HOM05D004666 ORTHO05D005822 4.6e-110 403.7 818 33.4
AagrBONN_evm.TU.Sc2ySwM_344.3422 Anthoceros agrestis HOM05D004666 ORTHO05D005822 2.4e-106 391.3 739 34.8
Hma1.2p1_2087F.1_g313760 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 5.3e-106 390.2 292 65.1
Mapoly0021s0027 Marchantia polymorpha HOM05D004666 ORTHO05D005822 2.5e-103 381.3 727 35.8
Pp3c1_31470 Physcomitrium patens HOM05D004666 ORTHO05D005822 1.9e-100 371.7 743 35.1
RhsimUnG0189100 Rhododendron simsii HOM05D004666 ORTHO05D005822 7.7e-97 359.8 216 80.1
Hma1.2p1_0084F.1_g043480 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 3.1e-66 258.1 206 61.7
Haze_16425 Corylus avellana HOM05D004666 ORTHO05D005822 1.0e-64 253.1 297 47.8
PGSC0003DMG400008959 Solanum tuberosum HOM05D004666 ORTHO05D005822 1.9e-63 248.8 715 29.9
ATR0820G266 Amborella trichopoda HOM05D004666 ORTHO05D005822 4.7e-62 244.2 302 46.0
ATR0820G291 Amborella trichopoda HOM05D004666 ORTHO05D005822 1.1e-50 206.5 335 35.2
Hma1.2p1_2087F.1_g313780 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.6e-49 202.6 297 41.8
SEGI_09998 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 7.8e-49 200.3 133 69.2
CBR_g38478 Chara braunii HOM05D004666 ORTHO05D005822 6.6e-48 197.2 635 27.1
Hma1.2p1_0084F.1_g043500 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.6e-46 192.6 338 39.1
Eucgr.L02043 Eucalyptus grandis HOM05D004666 ORTHO05D005822 4.9e-43 181.0 206 48.5
Cpa.g.c36918 Carica papaya HOM05D004666 ORTHO05D005822 6.0e-41 174.1 481 33.5
FAN05G4874 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.0e-40 173.3 483 29.6
FAN14G5421 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.7e-40 172.6 244 42.2
CSS0049785 Camellia sinensis var. sinensis HOM05D004666 ORTHO05D005822 1.9e-39 169.1 118 68.6
SEGI_32780 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 1.4e-37 162.9 213 44.1
QL03p004438 Quercus lobata HOM05D004666 ORTHO05D005822 1.8e-37 162.5 261 41.0
QL03p004414 Quercus lobata HOM05D004666 ORTHO05D005822 2.0e-36 159.1 300 36.7
FAN09G1276 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.7e-35 156.0 430 30.2
RcHm_v2.0_Chr3g0472701 Rosa chinensis HOM05D004666 ORTHO05D005822 8.3e-35 153.7 440 29.3
SHI23868 Sapria himalayana HOM05D004666 ORTHO05D005822 1.4e-34 152.9 209 44.5
Hma1.2p1_0084F.1_g043490 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 8.1e-30 137.1 86 70.9
Sabra06G0024800 Salix brachista HOM05D004666 ORTHO05D005822 5.1e-24 117.9 192 40.6
CDE08G0815 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 3.3e-23 115.2 186 34.9
arahy.Tifrunner.gnm1.ann1.AE8L4W Arachis hypogaea HOM05D004666 ORTHO05D005822 6.4e-19 100.9 157 41.4
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 6.4e-19 100.9 407 23.3
FAN10G4251 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.9e-18 99.4 536 24.4
Os02g0307300 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 1.3e-16 93.2 186 34.4
Haze_16424 Corylus avellana HOM05D004666 ORTHO05D005822 4.5e-12 78.2 193 30.1
Os07g0454400 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 2.4e-10 72.4 91 41.8
RcHm_v2.0_Chr7g0223981 Rosa chinensis HOM05D004666 ORTHO05D005822 4.2e-10 71.6 51 58.8
QL04p079053 Quercus lobata HOM05D004666 ORTHO05D005822 2.3e-08 65.9 45 64.4
Sabra16G0037300 Salix brachista HOM05D004666 ORTHO05D017783 3.0e-08 65.5 33 84.8


User provided reference genes

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