Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro22463 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.2e-68 263.8 164 100.0
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 2.3e-30 136.7 68 100.0
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 4.6e-23 112.5 68 82.4
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.5e-18 97.4 69 76.8
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 8.4e-17 91.7 69 69.6
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 3.1e-11 73.2 69 62.3
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 5.3e-11 72.4 70 58.6
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 6.9e-11 72.0 72 56.9
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 2.0e-10 70.5 63 57.1
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 2.0e-10 70.5 57 66.7
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 4.4e-10 69.3 73 61.6
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 9.9e-10 68.2 61 62.3
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 9.9e-10 68.2 61 62.3
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 1.3e-09 67.8 69 60.9
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 1.3e-09 67.8 62 61.3
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 2.2e-09 67.0 58 62.1
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 2.9e-09 66.6 71 56.3
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 4.9e-09 65.9 68 52.9
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 4.9e-09 65.9 68 52.9
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 6.4e-09 65.5 67 58.2
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 8.4e-09 65.1 71 56.3
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 1.1e-08 64.7 73 54.8
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.4e-08 64.3 64 57.8
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.4e-08 64.3 64 57.8
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 2.4e-08 63.5 67 58.2
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 2.4e-08 63.5 55 61.8
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 2.4e-08 63.5 71 54.9
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 3.2e-08 63.2 69 52.2
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 3.2e-08 63.2 54 61.1
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 4.2e-08 62.8 69 56.5
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 5.4e-08 62.4 72 48.6
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 5.4e-08 62.4 80 48.8
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 5.4e-08 62.4 69 55.1
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 9.3e-08 61.6 71 50.7
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 9.3e-08 61.6 65 52.3
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 9.3e-08 61.6 66 50.0
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 1.2e-07 61.2 58 55.2
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 1.2e-07 61.2 55 63.6
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 1.6e-07 60.8 56 62.5
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 1.6e-07 60.8 63 55.6
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 1.6e-07 60.8 63 55.6
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 2.1e-07 60.5 51 66.7
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 2.7e-07 60.1 80 47.5
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 3.5e-07 59.7 72 47.2
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 3.5e-07 59.7 70 50.0
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 3.5e-07 59.7 72 47.2
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 3.5e-07 59.7 70 50.0
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 3.5e-07 59.7 72 47.2
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 3.5e-07 59.7 70 50.0
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 3.5e-07 59.7 72 47.2
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 4.6e-07 59.3 51 64.7
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 4.6e-07 59.3 72 47.2
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 6.0e-07 58.9 97 42.3
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 6.0e-07 58.9 97 42.3
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 6.0e-07 58.9 70 50.0
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 6.0e-07 58.9 63 52.4
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 7.9e-07 58.5 64 50.0
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 7.9e-07 58.5 72 45.8
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 7.9e-07 58.5 55 61.8
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.0e-06 58.2 55 56.4
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 1.0e-06 58.2 68 47.1
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 1.0e-06 58.2 97 42.3
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 1.3e-06 57.8 60 55.0
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 1.3e-06 57.8 55 61.8
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 1.3e-06 57.8 51 64.7
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 1.7e-06 57.4 68 45.6
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 1.7e-06 57.4 68 45.6
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 1.7e-06 57.4 68 45.6
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 1.7e-06 57.4 72 44.4
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 1.7e-06 57.4 70 48.6
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 1.7e-06 57.4 68 52.9
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 2.3e-06 57.0 62 51.6
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 2.3e-06 57.0 64 53.1
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 2.3e-06 57.0 68 48.5
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 3.0e-06 56.6 54 55.6
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 3.0e-06 56.6 64 51.6
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 3.0e-06 56.6 69 50.7
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 3.0e-06 56.6 51 60.8
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 3.0e-06 56.6 51 64.7
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 3.9e-06 56.2 68 51.5
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 3.9e-06 56.2 51 62.7
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 5.1e-06 55.8 72 43.1
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 6.6e-06 55.5 69 52.2
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 8.7e-06 55.1 54 55.6
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 8.7e-06 55.1 74 47.3
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 8.7e-06 55.1 64 51.6
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 8.7e-06 55.1 84 44.0
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 8.7e-06 55.1 51 58.8


User provided reference genes

Program Settings