Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro22396 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 5.3e-75 284.3 143 100.0
vmacro22416 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 5.3e-75 284.3 143 100.0
vmacro22421 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 5.3e-75 284.3 143 100.0
DCAR_001146 Daucus carota HOM05D000963 ORTHO05D005131 5.9e-74 280.8 143 98.6
DCAR_032037 Daucus carota HOM05D000963 ORTHO05D005131 5.9e-74 280.8 143 98.6
SGA_v2.0_scaffold893G53701 Striga asiatica HOM05D000963 ORTHO05D005131 7.7e-74 280.4 143 98.6
RhsimPtG0005500 Rhododendron simsii HOM05D000963 ORTHO05D005131 2.2e-73 278.9 143 97.9
unitig_87.g28036 Utricularia gibba HOM05D000963 ORTHO05D005131 2.2e-73 278.9 143 98.6
Sc03g0007080 Simmondsia chinensis HOM05D000963 ORTHO05D005131 2.8e-68 261.9 143 94.4
PGSC0003DMG400020295 Solanum tuberosum HOM05D000963 ORTHO05D005131 1.3e-65 253.1 146 90.4
Gohir.D03G074448 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.4e-62 243.0 125 98.4
ECA074G0007 Erigeron canadensis HOM05D000963 ORTHO05D004715 5.2e-62 241.1 140 90.0
ECA074G0008 Erigeron canadensis HOM05D000963 ORTHO05D004715 5.2e-62 241.1 140 90.0
ECA169G0003 Erigeron canadensis HOM05D000963 ORTHO05D005131 5.2e-62 241.1 140 90.0
unitig_8.g4106 Utricularia gibba HOM05D000963 ORTHO05D005131 1.4e-59 233.0 140 87.9
Gohir.A09G101420 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.8e-59 232.6 125 95.2
SHI36398 Sapria himalayana HOM05D000963 ORTHO05D005131 3.1e-59 231.9 137 88.3
PGSC0003DMG400018892 Solanum tuberosum HOM05D000963 ORTHO05D005131 1.2e-58 229.9 140 87.1
PGSC0003DMG400046976 Solanum tuberosum HOM05D000963 ORTHO05D005131 4.5e-58 228.0 146 81.5
DCAR_001525 Daucus carota HOM05D000963 ORTHO05D005131 2.5e-56 222.2 116 96.6
Gohir.A12G092444 Gossypium hirsutum HOM05D000963 ORTHO05D005131 7.2e-56 220.7 125 89.6
CAN.G1185.10 Capsicum annuum HOM05D000963 ORTHO05D004715 1.0e-54 216.9 143 80.4
Oeu039801.1 Olea europaea HOM05D000963 ORTHO05D005131 1.8e-54 216.1 126 88.9
SHI37614 Sapria himalayana HOM05D000963 ORTHO05D005131 3.2e-48 195.3 113 90.3
BcaNung01517 Brassica carinata HOM05D000963 ORTHO05D005131 2.6e-45 185.7 99 98.0
DCAR_018748 Daucus carota HOM05D003334 ORTHO05D004076 2.6e-45 185.7 98 94.9
SalBow6G4874 Salvia bowleyana HOM05D000963 ORTHO05D005131 5.7e-45 184.5 94 98.9
unitig_91.g26518 Utricularia gibba HOM05D001325 ORTHO05D001540 5.7e-45 184.5 94 98.9
unitig_91.g26528 Utricularia gibba HOM05D000963 ORTHO05D005131 5.7e-45 184.5 94 98.9
TAR365G0238 Trochodendron aralioides HOM05D001325 ORTHO05D001540 9.8e-45 183.7 94 97.9
EL10As6g23662 Beta vulgaris HOM05D001325 ORTHO05D001540 1.1e-43 180.3 94 96.8
Hund25913 Selenicereus undatus HOM05D000963 ORTHO05D005131 1.1e-43 180.3 93 95.7
SHI42531 Sapria himalayana HOM05D000963 ORTHO05D005131 1.8e-43 179.5 103 89.3
SHI47131 Sapria himalayana HOM05D000963 ORTHO05D005131 3.1e-43 178.7 102 90.2
Gohir.D02G117532 Gossypium hirsutum HOM05D000963 ORTHO05D005131 4.1e-43 178.3 125 76.8
Sc05g0004130 Simmondsia chinensis HOM05D000963 ORTHO05D005131 2.5e-40 169.1 121 76.0
Gohir.D04G090233 Gossypium hirsutum HOM05D000963 ORTHO05D005131 6.1e-39 164.5 94 89.4
TAR633G0621 Trochodendron aralioides HOM05D000963 ORTHO05D005131 6.1e-39 164.5 81 97.5
Oeu015125.1 Olea europaea HOM05D000963 ORTHO05D010201 3.0e-38 162.2 113 77.9
Gorai.012G100900 Gossypium raimondii HOM05D000963 ORTHO05D005131 1.5e-37 159.8 94 87.2
Sopen02g009100 Solanum pennellii HOM05D000963 ORTHO05D005131 9.8e-37 157.1 87 88.5
Gohir.D10G125850 Gossypium hirsutum HOM05D000963 ORTHO05D005131 2.2e-36 156.0 94 83.0
Sc05g0002290 Simmondsia chinensis HOM05D000963 ORTHO05D005131 2.8e-36 155.6 94 88.3
CSS0000719 Camellia sinensis var. sinensis HOM05D000963 ORTHO05D005131 4.1e-35 151.8 135 63.0
Cpa.g.sc389.2 Carica papaya HOM05D000963 ORTHO05D005131 7.0e-35 151.0 94 80.9
Nitab4.5_0004841g0030 Nicotiana tabacum HOM05D000963 ORTHO05D005131 1.3e-33 146.7 86 88.4
Sopen11g020190 Solanum pennellii HOM05D000963 ORTHO05D005131 1.3e-33 146.7 94 83.0
Dinv39831 Davidia involucrata HOM05D000963 ORTHO05D004715 8.6e-33 144.1 73 98.6
unitig_87.g27920 Utricularia gibba HOM05D000963 ORTHO05D001540 8.6e-33 144.1 91 84.6
Gohir.A01G056250 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.9e-32 142.9 94 78.7
Sc25g0002000 Simmondsia chinensis HOM05D000963 ORTHO05D005131 4.3e-32 141.7 81 88.9
SGA_v2.0_scaffold126G33874 Striga asiatica HOM05D000963 ORTHO05D005131 4.3e-32 141.7 75 92.0
vmacro09305 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 9.5e-32 140.6 122 63.9
Hma1.2p1_0045F.1_g026530 Hydrangea macrophylla HOM05D000963 ORTHO05D005131 2.3e-30 136.0 84 83.3
EL10As10g23961 Beta vulgaris HOM05D000963 ORTHO05D005131 8.9e-30 134.0 78 88.5
Sc05g0004060 Simmondsia chinensis HOM05D000963 ORTHO05D005131 8.9e-30 134.0 73 91.8
MBI13_g30267_MAGBIO Magnolia biondii HOM05D000571 ORTHO05D000435 7.5e-29 131.0 90 77.8
vmacro09302 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 7.5e-29 131.0 82 82.9
Solyc01g017050.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 2.2e-28 129.4 67 92.5
Migut.D01399 Erythranthe guttata HOM05D000963 ORTHO05D011117 2.9e-28 129.0 102 72.5
PGSC0003DMG400036067 Solanum tuberosum HOM05D000963 ORTHO05D001540 1.1e-27 127.1 76 85.5
Sc14g0005060 Simmondsia chinensis HOM05D000963 ORTHO05D005131 1.8e-27 126.3 73 89.0
PGSC0003DMG400001215 Solanum tuberosum HOM05D000963 ORTHO05D005131 1.0e-25 120.6 98 70.4
Lsat_1_v5_gn_4_145420 Lactuca sativa HOM05D000963 ORTHO05D005131 1.7e-25 119.8 58 98.3
MBI16_g46635_MAGBIO Magnolia biondii HOM05D000963 ORTHO05D005131 1.5e-24 116.7 79 78.5
Aqoxy4G01626 Aquilegia oxysepala HOM05D003517 ORTHO05D005131 2.5e-24 115.9 94 70.2
Oeu012784.1 Olea europaea HOM05D000963 ORTHO05D005131 1.6e-23 113.2 66 84.8
Cpa.g.sc86.15 Carica papaya HOM05D000963 ORTHO05D005131 3.6e-23 112.1 78 74.4
Gohir.D09G105350 Gossypium hirsutum HOM05D000963 ORTHO05D005131 8.0e-23 110.9 68 80.9
Gorai.005G078000 Gossypium raimondii HOM05D000963 ORTHO05D005131 3.1e-22 109.0 79 73.4
Migut.D01379 Erythranthe guttata HOM05D000963 ORTHO05D005131 1.2e-21 107.1 64 84.4
Gohir.1Z049680 Gossypium hirsutum HOM05D000963 ORTHO05D005131 2.6e-21 105.9 79 70.9
EL10Ac7g17438 Beta vulgaris HOM05D000963 ORTHO05D005131 9.8e-21 104.0 56 89.3
Gohir.D11G280866 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.3e-20 103.6 73 68.5
Gorai.007G303200 Gossypium raimondii HOM05D000963 ORTHO05D005131 1.7e-20 103.2 73 68.5
Dinv44812 Davidia involucrata HOM05D000086 ORTHO05D000431 6.4e-20 101.3 54 88.9
Nitab4.5_0000017g0110 Nicotiana tabacum HOM05D000963 ORTHO05D005131 8.3e-20 100.9 56 89.3
Nitab4.5_0006211g0050 Nicotiana tabacum HOM05D000963 ORTHO05D005131 8.3e-20 100.9 54 90.7
arahy.Tifrunner.gnm1.ann1.MJQ8WH Arachis hypogaea HOM05D000963 ORTHO05D011117 2.3e-17 92.8 138 48.6
LjContig00319g0011411 Lotus japonicus HOM05D000963 ORTHO05D005131 3.9e-17 92.0 46 97.8
Sopen11g020200 Solanum pennellii HOM05D000004 ORTHO05D000002 5.6e-16 88.2 51 84.3
VMungo1024G0002 Vigna mungo HOM05D000963 ORTHO05D005131 5.6e-16 88.2 68 67.6
arahy.Tifrunner.gnm1.ann1.ZFFY2U Arachis hypogaea HOM05D000963 ORTHO05D005131 1.2e-15 87.0 44 95.5
Ca_03776_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 1.2e-15 87.0 44 95.5
Ca_03777_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 1.2e-15 87.0 44 95.5
Gorai.002G152100 Gossypium raimondii HOM05D000963 ORTHO05D005131 2.8e-15 85.9 83 57.8
SEGI_13287 Sequoiadendron giganteum HOM05D000963 ORTHO05D005131 3.6e-15 85.5 56 76.8
Gohir.A13G086560 Gossypium hirsutum HOM05D000963 ORTHO05D005131 8.1e-15 84.3 59 78.0
Potri.007G062061 Populus trichocarpa HOM05D010604 ORTHO05D012476 8.1e-15 84.3 117 50.4
Medtr7g093213 Medicago truncatula HOM05D000963 ORTHO05D005131 1.1e-14 84.0 41 97.6
Nitab4.5_0008665g0050 Nicotiana tabacum HOM05D000963 ORTHO05D005131 1.1e-14 84.0 48 83.3
Nitab4.5_0000729g0060 Nicotiana tabacum HOM05D000963 ORTHO05D005131 1.8e-14 83.2 57 70.2
SEGI_10061 Sequoiadendron giganteum HOM05D000963 ORTHO05D005131 6.8e-14 81.3 54 74.1
Gohir.D01G121360 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.5e-13 80.1 83 54.2
VMungo0464G1437 Vigna mungo HOM05D000963 ORTHO05D005131 1.5e-13 80.1 44 88.6
arahy.Tifrunner.gnm1.ann1.KZ3I51 Arachis hypogaea HOM05D010604 ORTHO05D012476 3.4e-13 79.0 148 43.2
C06p23110 Brassica napus HOM05D000963 ORTHO05D005131 3.4e-13 79.0 44 88.6
C09p24700 Brassica napus HOM05D000963 ORTHO05D005131 3.4e-13 79.0 44 88.6
C09p39380 Brassica napus HOM05D000963 ORTHO05D005131 3.4e-13 79.0 44 88.6
BraSC143t45666Z Brassica rapa HOM05D000963 ORTHO05D005131 3.4e-13 79.0 44 88.6
BraSC25t45900Z Brassica rapa HOM05D000963 ORTHO05D005131 3.4e-13 79.0 44 88.6
BraSC59t46558Z Brassica rapa HOM05D000963 ORTHO05D005131 3.4e-13 79.0 44 88.6
Gohir.A12G053150 Gossypium hirsutum HOM05D000963 ORTHO05D005131 4.4e-13 78.6 49 85.7
Sc25g0002260 Simmondsia chinensis HOM05D000963 ORTHO05D005131 2.2e-12 76.3 41 90.2
Glyma.05G084600 Glycine max HOM05D000963 ORTHO05D005131 3.7e-12 75.5 44 79.5
ECA234G4679 Erigeron canadensis HOM05D000476 ORTHO05D004793 4.9e-12 75.1 37 94.6
Sc22g0004610 Simmondsia chinensis HOM05D000963 ORTHO05D011117 6.4e-12 74.7 42 83.3
CDE02G2642 Ceratophyllum demersum HOM05D000963 ORTHO05D005131 3.2e-11 72.4 37 97.3
SHI36889 Sapria himalayana HOM05D000963 ORTHO05D005131 3.2e-11 72.4 37 94.6
Oeu048363.1 Olea europaea HOM05D000963 ORTHO05D018542 2.1e-10 69.7 122 41.8
VMungo0329G0006 Vigna mungo HOM05D010604 ORTHO05D012476 2.1e-10 69.7 141 41.8
Oeu012823.1 Olea europaea HOM05D000963 ORTHO05D005131 6.0e-10 68.2 36 88.9
Manes.02G203601 Manihot esculenta HOM05D000963 ORTHO05D005131 7.8e-10 67.8 45 75.6
Oeu014166.1 Olea europaea HOM05D000963 ORTHO05D005131 1.3e-09 67.0 33 97.0
arahy.Tifrunner.gnm1.ann1.05XESX Arachis hypogaea HOM05D010604 ORTHO05D012476 3.0e-09 65.9 48 70.8
arahy.Tifrunner.gnm1.ann1.0LX666 Arachis hypogaea HOM05D010604 ORTHO05D012476 3.0e-09 65.9 48 70.8
arahy.Tifrunner.gnm1.ann1.R4PVYI Arachis hypogaea HOM05D000963 ORTHO05D004715 3.9e-09 65.5 31 100.0
Cfa010543 Carpinus fangiana HOM05D000963 ORTHO05D005131 3.9e-09 65.5 36 88.9
CsaV3_UNG209450 Cucumis sativus L. HOM05D010604 ORTHO05D012476 1.9e-08 63.2 48 68.8
Lsat_1_v5_gn_4_50261 Lactuca sativa HOM05D004291 ORTHO05D005620 1.9e-08 63.2 48 68.8
Lsat_1_v5_gn_5_152921 Lactuca sativa HOM05D010604 ORTHO05D012476 1.9e-08 63.2 48 68.8
RhsimMtG0000800 Rhododendron simsii HOM05D010604 ORTHO05D012476 1.9e-08 63.2 48 68.8
PGSC0003DMG400003919 Solanum tuberosum HOM05D000963 ORTHO05D005131 9.5e-08 60.8 42 64.3
Oeu043433.1 Olea europaea HOM05D000963 ORTHO05D005131 2.8e-07 59.3 40 70.0
Eucgr.I02498 Eucalyptus grandis HOM05D003497 ORTHO05D003964 3.6e-07 58.9 40 67.5
vmacro21330 Vaccinium macrocarpon HOM05D000963 ORTHO05D014445 3.6e-07 58.9 43 76.7
Sopen09g020260 Solanum pennellii HOM05D010604 ORTHO05D012476 4.7e-07 58.5 49 61.2
SGA_v2.0_scaffold43G16403 Striga asiatica HOM05D000457 ORTHO05D000560 1.8e-06 56.6 32 87.5


User provided reference genes

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