Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro22395 Vaccinium macrocarpon HOM05D008016 ORTHO05D004271 2.3e-81 305.4 151 100.0
vmacro22420 Vaccinium macrocarpon HOM05D008016 ORTHO05D010055 1.3e-52 209.9 103 100.0
Sc05g0004050 Simmondsia chinensis HOM05D001966 ORTHO05D007227 2.8e-26 122.5 63 92.1
Sed0006309 Sechium edule HOM05D010190 ORTHO05D009823 6.3e-26 121.3 125 60.8
FAN22G1916 Fragaria x ananassa HOM05D008037 ORTHO05D004271 6.9e-25 117.9 64 90.6
BolSC35t60714H Brassica oleracea HOM05D008016 ORTHO05D004271 1.2e-24 117.1 159 47.2
BraSC103t45496Z Brassica rapa HOM05D008016 ORTHO05D004271 1.2e-24 117.1 159 47.2
BolSC49t61153H Brassica oleracea HOM05D008016 ORTHO05D010588 1.5e-24 116.7 167 47.3
Sed0000469 Sechium edule HOM05D010190 ORTHO05D009823 3.4e-24 115.5 126 59.5
COL.COLO4_33462 Corchorus olitorius HOM05D008016 ORTHO05D004271 7.7e-24 114.4 63 90.5
Nitab4.5_0001170g0070 Nicotiana tabacum HOM05D008037 ORTHO05D004271 2.9e-23 112.5 158 48.1
arahy.Tifrunner.gnm1.ann1.54SFA9 Arachis hypogaea HOM05D008037 ORTHO05D004271 6.5e-23 111.3 84 75.0
Gohir.D07G151450 Gossypium hirsutum HOM05D008016 ORTHO05D004271 9.4e-22 107.5 57 87.7
BcaB02g11353 Brassica carinata HOM05D007952 ORTHO05D009823 3.6e-21 105.5 61 85.2
BcaNung07085 Brassica carinata HOM05D001966 ORTHO05D010449 3.6e-21 105.5 61 85.2
Oeu040617.1 Olea europaea HOM05D008016 ORTHO05D004271 4.7e-21 105.1 55 94.5
Solyc11g021160.1 Solanum lycopersicum HOM05D001966 ORTHO05D010055 4.7e-21 105.1 116 52.6
vmacro22417 Vaccinium macrocarpon HOM05D008354 ORTHO05D010055 6.1e-21 104.8 73 74.0
CAN.G134.6 Capsicum annuum HOM05D008037 ORTHO05D004271 3.0e-20 102.4 53 94.3
DCAR_001145 Daucus carota HOM05D001966 ORTHO05D010055 5.2e-20 101.7 48 100.0
Peaxi162Scf00687g00611 Petunia axillaris HOM05D001966 ORTHO05D010055 1.5e-19 100.1 73 72.6
FAN26G1474 Fragaria x ananassa HOM05D001966 ORTHO05D010986 2.0e-19 99.8 58 86.2
Nitab4.5_0006502g0020 Nicotiana tabacum HOM05D001966 ORTHO05D010055 2.0e-19 99.8 54 87.0
SHI36397 Sapria himalayana HOM05D008037 ORTHO05D004271 2.2e-18 96.3 49 93.9
Hma1.2p1_0594F.1_g185800 Hydrangea macrophylla HOM05D001966 ORTHO05D010986 3.7e-18 95.5 44 100.0
Sopen10g016570 Solanum pennellii HOM05D008037 ORTHO05D004271 6.3e-18 94.7 53 83.0
Nitab4.5_0001761g0150 Nicotiana tabacum HOM05D008037 ORTHO05D004271 8.2e-18 94.4 52 84.6
Sed0014465 Sechium edule HOM05D010190 ORTHO05D004271 1.8e-17 93.2 119 53.8
EL10As10g23964 Beta vulgaris HOM05D001966 ORTHO05D010055 5.3e-17 91.7 73 69.9
CAN.G1298.21 Capsicum annuum HOM05D000445 ORTHO05D000314 2.0e-16 89.7 53 83.0
Sed0000516 Sechium edule HOM05D008037 ORTHO05D004271 2.6e-16 89.4 97 57.7
RcHm_v2.0_Chr2g0095251 Rosa chinensis HOM05D008016 ORTHO05D004271 4.5e-16 88.6 47 91.5
C04p22520 Brassica napus HOM05D008016 ORTHO05D004271 1.0e-15 87.4 86 59.3
Nitab4.5_0003101g0110 Nicotiana tabacum HOM05D008354 ORTHO05D010055 2.9e-15 85.9 44 88.6
Nitab4.5_0008665g0040 Nicotiana tabacum HOM05D001070 ORTHO05D002096 2.9e-15 85.9 45 88.9
BolSC29t60497H Brassica oleracea HOM05D008016 ORTHO05D010588 5.0e-15 85.1 84 57.1
BolSC29t60557H Brassica oleracea HOM05D008016 ORTHO05D010588 5.0e-15 85.1 88 55.7
BolSC45t60920H Brassica oleracea HOM05D008016 ORTHO05D010588 5.0e-15 85.1 88 55.7
BolSC46t60968H Brassica oleracea HOM05D008016 ORTHO05D010588 5.0e-15 85.1 88 55.7
BraSC103t45418Z Brassica rapa HOM05D008016 ORTHO05D010588 5.0e-15 85.1 88 55.7
BraSC25t45901Z Brassica rapa HOM05D008016 ORTHO05D010588 5.0e-15 85.1 88 55.7
BraSC25t45922Z Brassica rapa HOM05D008016 ORTHO05D010588 5.0e-15 85.1 88 55.7
MBI08_g48225_MAGBIO Magnolia biondii HOM05D008037 ORTHO05D004271 3.2e-14 82.4 42 95.2
ClCG02G009760 Citrullus lanatus HOM05D001966 ORTHO05D000002 7.2e-14 81.3 102 50.0
CAN.G1185.5 Capsicum annuum HOM05D001070 ORTHO05D010055 4.7e-13 78.6 48 81.2
Sc02g0004570 Simmondsia chinensis HOM05D008037 ORTHO05D004271 1.0e-12 77.4 68 63.2
HPP92_028386 Vanilla planifolia HOM05D009726 ORTHO05D010055 1.0e-12 77.4 38 94.7
Nitab4.5_0000002g0300 Nicotiana tabacum HOM05D001966 ORTHO05D010055 2.3e-12 76.3 41 85.4
SHI27036 Sapria himalayana HOM05D001966 ORTHO05D010986 2.3e-12 76.3 40 87.5
arahy.Tifrunner.gnm1.ann1.7D98FQ Arachis hypogaea HOM05D000963 ORTHO05D004715 4.0e-12 75.5 38 92.1
arahy.Tifrunner.gnm1.ann1.U095GY Arachis hypogaea HOM05D000963 ORTHO05D004715 4.0e-12 75.5 38 92.1
arahy.Tifrunner.gnm1.ann1.FN06MZ Arachis hypogaea HOM05D000533 ORTHO05D006151 2.0e-11 73.2 36 91.7
Lsat_1_v5_gn_4_68181 Lactuca sativa HOM05D008016 ORTHO05D010055 2.6e-11 72.8 40 87.5
COL.COLO4_03213 Corchorus olitorius HOM05D001966 ORTHO05D010986 3.3e-11 72.4 112 41.1
EL10Ac6g14592 Beta vulgaris HOM05D008354 ORTHO05D010055 5.7e-11 71.6 37 97.3
Peaxi162Scf00080g00519 Petunia axillaris HOM05D001966 ORTHO05D010055 5.7e-11 71.6 61 60.7
CAN.G82.6 Capsicum annuum HOM05D000011 ORTHO05D000018 4.8e-10 68.6 36 91.7
Psat5g119000 Pisum sativum HOM05D009726 ORTHO05D010588 8.2e-10 67.8 41 78.0
EL10Ac6g14593 Beta vulgaris HOM05D001966 ORTHO05D010055 2.4e-09 66.2 29 100.0
arahy.Tifrunner.gnm1.ann1.R58SNE Arachis hypogaea HOM05D008016 ORTHO05D010055 9.1e-09 64.3 54 64.8
arahy.Tifrunner.gnm1.ann1.V4KXIX Arachis hypogaea HOM05D009726 ORTHO05D010588 1.6e-08 63.5 38 78.9
SalBow1G8704 Salvia bowleyana HOM05D001966 ORTHO05D007227 1.6e-08 63.5 41 85.4
arahy.Tifrunner.gnm1.ann1.PRQI1Y Arachis hypogaea HOM05D008016 ORTHO05D010588 4.5e-08 62.0 38 76.3
Migut.A01208 Erythranthe guttata HOM05D008016 ORTHO05D004271 5.9e-08 61.6 35 94.3
BolSC35t60682H Brassica oleracea HOM05D008016 ORTHO05D010588 7.7e-08 61.2 96 42.7
Nitab4.5_0012234g0020 Nicotiana tabacum HOM05D008016 ORTHO05D010055 7.7e-08 61.2 51 64.7
Sed0006095 Sechium edule HOM05D010190 ORTHO05D010055 7.7e-08 61.2 43 81.4
Nitab4.5_0004137g0030 Nicotiana tabacum HOM05D008354 ORTHO05D010055 1.0e-07 60.8 56 58.9
arahy.Tifrunner.gnm1.ann1.9FU6Q4 Arachis hypogaea HOM05D009726 ORTHO05D010588 1.3e-07 60.5 36 75.0
arahy.Tifrunner.gnm1.ann1.CK4XFX Arachis hypogaea HOM05D009726 ORTHO05D010055 1.3e-07 60.5 34 85.3
arahy.Tifrunner.gnm1.ann1.JWI1UU Arachis hypogaea HOM05D009726 ORTHO05D010588 1.3e-07 60.5 41 68.3
Rhsim05G0132500 Rhododendron simsii HOM05D008016 ORTHO05D004271 1.7e-07 60.1 41 70.7
RcHm_v2.0_Chr7g0221131 Rosa chinensis HOM05D008016 ORTHO05D004271 1.9e-06 56.6 54 59.3
Zm00001eb441600 Zea mays HOM05D008037 ORTHO05D004271 1.9e-06 56.6 51 62.7
CAN.G386.21 Capsicum annuum HOM05D001966 ORTHO05D010055 3.2e-06 55.8 35 77.1
Nitab4.5_0005831g0030 Nicotiana tabacum HOM05D001090 ORTHO05D006167 3.2e-06 55.8 44 63.6
arahy.Tifrunner.gnm1.ann1.20TFSQ Arachis hypogaea HOM05D008037 ORTHO05D004271 4.2e-06 55.5 28 85.7
arahy.Tifrunner.gnm1.ann1.LBLK2X Arachis hypogaea HOM05D008037 ORTHO05D004271 4.2e-06 55.5 28 85.7
arahy.Tifrunner.gnm1.ann1.P2FSG5 Arachis hypogaea HOM05D008037 ORTHO05D004271 4.2e-06 55.5 28 85.7
BcaC04g20781 Brassica carinata HOM05D001966 ORTHO05D010449 5.5e-06 55.1 22 100.0
arahy.Tifrunner.gnm1.ann1.ASR258 Arachis hypogaea HOM05D008037 ORTHO05D004271 7.2e-06 54.7 28 85.7


User provided reference genes

Program Settings