Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 8.1e-220 766.9 430 100.0
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 4.2e-208 728.0 430 92.6
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 2.8e-188 662.1 432 83.8
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 1.3e-180 636.7 431 82.1
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 4.5e-178 628.2 430 80.0
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 3.5e-170 602.1 430 75.8
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 7.5e-165 584.3 427 77.5
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 9.7e-165 583.9 394 74.9
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 9.7e-165 583.9 391 74.9
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 2.4e-163 579.3 389 74.6
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 4.5e-162 575.1 391 73.9
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 6.5e-161 571.2 390 72.8
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 3.2e-160 568.9 389 73.8
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 4.2e-160 568.5 388 73.7
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 6.3e-156 554.7 391 73.4
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 7.0e-155 551.2 388 74.0
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 8.6e-153 544.3 394 71.6
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 1.9e-152 543.1 393 72.3
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 2.5e-152 542.7 387 73.1
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 2.5e-152 542.7 398 74.4
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 2.5e-152 542.7 393 72.0
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 3.3e-152 542.3 390 71.0
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 9.5e-152 540.8 394 71.1
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 4.7e-151 538.5 391 73.1
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 8.0e-151 537.7 389 72.5
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 1.0e-150 537.3 393 69.2
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 1.4e-150 537.0 410 68.3
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 1.8e-150 536.6 390 71.5
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 6.8e-150 534.6 393 71.8
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 8.9e-150 534.3 392 70.7
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 4.4e-149 531.9 390 71.0
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 4.4e-149 531.9 390 71.0
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 2.2e-148 529.6 393 70.2
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 2.2e-148 529.6 394 70.8
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.2e-148 529.6 390 70.8
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 3.7e-148 528.9 392 69.9
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 6.3e-148 528.1 390 70.3
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 6.3e-148 528.1 392 69.9
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 8.3e-148 527.7 398 68.6
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 5.4e-147 525.0 393 70.7
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 5.4e-147 525.0 394 67.8
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 1.3e-145 520.4 392 69.6
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 5.0e-145 518.5 361 74.5
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 8.6e-145 517.7 390 68.5
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 4.3e-144 515.4 390 69.7
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 4.3e-144 515.4 388 70.1
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 5.6e-144 515.0 390 70.5
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 1.6e-143 513.5 388 67.5
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 6.1e-143 511.5 390 69.2
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 1.0e-142 510.8 388 68.0
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 4.0e-142 508.8 435 64.4
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.2e-141 507.3 437 68.4
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 1.2e-141 507.3 390 69.7
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 1.5e-141 506.9 391 67.8
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 7.5e-141 504.6 434 67.7
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 7.5e-141 504.6 434 67.1
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 1.3e-140 503.8 403 66.0
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 1.7e-140 503.4 390 68.2
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 4.9e-140 501.9 401 65.6
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 1.1e-139 500.7 389 67.9
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 1.9e-139 500.0 388 67.3
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 3.2e-139 499.2 391 68.3
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 4.1e-139 498.8 391 67.8
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.6e-138 496.9 395 67.8
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 2.7e-138 496.1 395 66.8
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 3.5e-138 495.7 395 66.8
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 6.0e-138 495.0 388 66.2
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 7.8e-138 494.6 391 67.5
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 3.0e-137 492.7 394 67.8
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 8.6e-137 491.1 394 65.5
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 8.6e-137 491.1 400 65.0
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 1.1e-136 490.7 393 66.9
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 1.1e-136 490.7 388 66.5
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 1.1e-136 490.7 394 67.0
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 2.5e-136 489.6 390 67.2
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 4.3e-136 488.8 387 67.4
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 9.5e-136 487.6 392 68.1
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 1.2e-135 487.3 395 64.6
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 4.7e-135 485.3 392 65.3
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 1.1e-134 484.2 387 67.2
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 4.4e-133 478.8 388 66.0
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 5.8e-133 478.4 396 65.7
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 6.4e-132 474.9 405 63.0
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 6.4e-132 474.9 389 65.8
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 3.2e-131 472.6 392 64.8
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 4.1e-131 472.2 389 64.8
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 7.0e-131 471.5 409 63.8
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 3.5e-130 469.2 391 66.5
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 4.6e-130 468.8 391 63.7
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 4.6e-130 468.8 390 65.6
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 7.8e-130 468.0 388 64.7
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 3.0e-129 466.1 387 64.9
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 6.6e-129 464.9 387 64.6
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 8.6e-129 464.5 387 64.6
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 1.1e-128 464.2 387 64.6
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 1.1e-128 464.2 387 64.6
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 2.1e-127 459.9 389 62.5
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.4e-126 457.2 387 61.8
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 2.3e-126 456.4 384 63.3
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 6.8e-126 454.9 389 62.0
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 8.9e-126 454.5 388 61.6
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 2.2e-124 449.9 391 61.1
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 7.1e-123 444.9 387 62.3
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 1.5e-120 437.2 389 59.9
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 8.1e-119 431.4 389 62.0
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 3.1e-118 429.5 388 61.1
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 3.1e-118 429.5 388 59.5
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 4.0e-118 429.1 388 61.1
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 2.0e-117 426.8 393 58.5
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 4.4e-117 425.6 389 61.2
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 1.3e-116 424.1 388 61.3
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 1.3e-116 424.1 325 66.5
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 1.7e-116 423.7 393 57.8
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 4.2e-115 419.1 392 57.7
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 4.8e-111 405.6 309 68.6
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 6.9e-110 401.7 382 57.6
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 1.2e-109 401.0 384 57.3
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 1.2e-109 401.0 383 57.4
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 1.5e-109 400.6 416 54.6
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 1.1e-107 394.4 383 56.9
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 8.7e-105 384.8 394 52.3
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 3.9e-89 332.8 324 55.6
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 2.6e-85 320.1 439 46.2
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 1.1e-78 298.1 249 65.1
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 1.7e-68 264.2 395 39.5
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 2.2e-68 263.8 307 47.6
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 3.8e-68 263.1 225 60.0
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 1.9e-67 260.8 238 57.6
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 1.6e-66 257.7 237 59.1
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 2.7e-66 256.9 156 84.0
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 3.6e-66 256.5 192 81.8
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 1.6e-58 231.1 204 59.8
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 4.5e-53 213.0 147 74.8
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 4.2e-51 206.5 150 73.3
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 6.1e-50 202.6 152 69.7
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 1.3e-47 194.9 361 35.7
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 1.4e-38 164.9 308 34.4
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 1.4e-22 111.7 113 58.4
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 2.3e-17 94.4 79 58.2
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 7.8e-13 79.3 68 57.4
Actinidia19558 Actinidia chinensis HOM05D005312 ORTHO05D006459 3.9e-12 77.0 74 63.5
C05p10420 Brassica napus HOM05D005312 ORTHO05D006459 2.2e-07 61.2 36 66.7
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 9.2e-06 55.8 161 29.2


User provided reference genes

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