Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro22182 Vaccinium macrocarpon HOM05D004822 ORTHO05D005632 6.3e-123 444.1 223 100.0
Rhsim09G0213500 Rhododendron simsii HOM05D004822 ORTHO05D005632 7.4e-23 111.7 68 76.5
CSS0024551 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 9.6e-23 111.3 69 76.8
CSS0024699 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 9.6e-23 111.3 69 76.8
vmacro00440 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 1.4e-21 107.5 106 56.6
Hma1.2p1_0649F.1_g195250 Hydrangea macrophylla HOM05D004822 ORTHO05D005632 9.0e-21 104.8 67 73.1
vmacro23200 Vaccinium macrocarpon HOM05D005410 ORTHO05D007394 1.3e-19 100.9 78 67.9
vmacro06525 Vaccinium macrocarpon HOM05D004822 ORTHO05D005632 2.2e-19 100.1 77 66.2
CSS0013609 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 8.4e-19 98.2 65 73.8
Dinv29145 Davidia involucrata HOM05D004822 ORTHO05D005632 8.4e-19 98.2 60 75.0
Dinv17249 Davidia involucrata HOM05D004822 ORTHO05D005632 3.2e-18 96.3 60 76.7
CSS0045344 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 4.2e-18 95.9 65 72.3
MSTRG.26924 Avicennia marina HOM05D004822 ORTHO05D005632 5.5e-18 95.5 60 75.0
Lj3A886T38 Lonicera japonica HOM05D004822 ORTHO05D005632 7.1e-18 95.1 60 71.7
Ah.04g156230 Amaranthus hybridus HOM05D004822 ORTHO05D005632 9.3e-18 94.7 71 60.6
Cc02_g00190 Coffea canephora HOM05D004822 ORTHO05D005632 1.2e-17 94.4 55 76.4
Migut.F00086 Erythranthe guttata HOM05D004822 ORTHO05D005632 1.6e-17 94.0 60 71.7
Haze_00399 Corylus avellana HOM05D004822 ORTHO05D005632 2.1e-17 93.6 74 60.8
Oeu007515.1 Olea europaea HOM05D004822 ORTHO05D005632 2.7e-17 93.2 75 60.0
GSVIVG01024375001 Vitis vinifera HOM05D004822 ORTHO05D005632 4.6e-17 92.4 58 74.1
Rhsim03G0222800 Rhododendron simsii HOM05D004822 ORTHO05D005632 7.9e-17 91.7 65 69.2
HanXRQChr08g0231351 Helianthus annuus HOM05D004822 ORTHO05D005632 1.0e-16 91.3 63 69.8
vmacro00790 Vaccinium macrocarpon HOM05D000001 ORTHO05D426836 1.0e-16 91.3 100 57.0
Peaxi162Scf00516g00674 Petunia axillaris HOM05D004822 ORTHO05D005632 1.3e-16 90.9 60 71.7
BraA10t44302Z Brassica rapa HOM05D004822 ORTHO05D005632 1.8e-16 90.5 67 64.2
Nitab4.5_0000150g0020 Nicotiana tabacum HOM05D004822 ORTHO05D005632 1.8e-16 90.5 63 66.7
Duzib106G0609 Durio zibethinus HOM05D004822 ORTHO05D005632 2.3e-16 90.1 62 69.4
Prupe.2G327400 Prunus persica HOM05D004822 ORTHO05D005632 2.3e-16 90.1 80 53.8
SGA_v2.0_scaffold44G16902 Striga asiatica HOM05D004822 ORTHO05D005632 2.3e-16 90.1 60 70.0
MD07G1309700 Malus domestica HOM05D004822 ORTHO05D005632 3.0e-16 89.7 68 63.2
QL09p023219 Quercus lobata HOM05D004822 ORTHO05D005632 3.0e-16 89.7 54 74.1
Sp6g27330 Schrenkiella parvula HOM05D004822 ORTHO05D005632 3.0e-16 89.7 67 64.2
EL10Ac3g05059 Beta vulgaris HOM05D004822 ORTHO05D005632 3.9e-16 89.4 56 69.6
MD01G1237100 Malus domestica HOM05D004822 ORTHO05D005632 3.9e-16 89.4 68 63.2
FvH4_7g34080 Fragaria vesca HOM05D004822 ORTHO05D005632 5.1e-16 89.0 53 73.6
Nitab4.5_0001108g0050 Nicotiana tabacum HOM05D004822 ORTHO05D005632 5.1e-16 89.0 58 67.2
AT5G16800 Arabidopsis thaliana HOM05D004822 ORTHO05D005632 6.7e-16 88.6 67 61.2
Nn1g00175 Nelumbo nucifera HOM05D004822 ORTHO05D005632 6.7e-16 88.6 60 70.0
BcaB01g04968 Brassica carinata HOM05D004822 ORTHO05D005632 1.1e-15 87.8 68 63.2
Carub.0006s1502 Capsella rubella HOM05D004822 ORTHO05D005632 1.1e-15 87.8 67 61.2
Thecc.05G215800 Theobroma cacao HOM05D004822 ORTHO05D005632 1.1e-15 87.8 60 68.3
AL6G27820 Arabidopsis lyrata HOM05D004822 ORTHO05D005632 1.5e-15 87.4 67 61.2
CARHR196360 Cardamine hirsuta HOM05D004822 ORTHO05D005632 1.5e-15 87.4 67 61.2
HanXRQChr16g0512131 Helianthus annuus HOM05D004822 ORTHO05D005632 1.5e-15 87.4 63 66.7
Solyc03g097140.3 Solanum lycopersicum HOM05D004822 ORTHO05D005632 1.5e-15 87.4 58 72.4
Sopen03g027880 Solanum pennellii HOM05D004822 ORTHO05D005632 1.5e-15 87.4 58 72.4
PGSC0003DMG400003148 Solanum tuberosum HOM05D004822 ORTHO05D005632 1.5e-15 87.4 58 72.4
Gohir.A08G221666 Gossypium hirsutum HOM05D004822 ORTHO05D005632 1.9e-15 87.0 68 60.3
Gohir.D08G241600 Gossypium hirsutum HOM05D004822 ORTHO05D005632 1.9e-15 87.0 68 58.8
Gorai.004G256900 Gossypium raimondii HOM05D004822 ORTHO05D005632 1.9e-15 87.0 68 58.8
Aqoxy3G02240 Aquilegia oxysepala HOM05D004822 ORTHO05D005632 2.5e-15 86.7 56 69.6
BolC3t13414H Brassica oleracea HOM05D004822 ORTHO05D005632 2.5e-15 86.7 68 63.2
A10p22430 Brassica napus HOM05D004822 ORTHO05D005632 3.3e-15 86.3 60 66.7
DCAR_020414 Daucus carota HOM05D004822 ORTHO05D005632 3.3e-15 86.3 58 69.0
Duzib177G1199 Durio zibethinus HOM05D004822 ORTHO05D005632 3.3e-15 86.3 62 66.1
CAN.G1131.24 Capsicum annuum HOM05D004822 ORTHO05D005632 4.3e-15 85.9 58 69.0
Sc25g0001230 Simmondsia chinensis HOM05D004822 ORTHO05D005632 4.3e-15 85.9 60 68.3
BolC9t58861H Brassica oleracea HOM05D004822 ORTHO05D005632 5.6e-15 85.5 67 59.7
COL.COLO4_15238 Corchorus olitorius HOM05D004822 ORTHO05D005632 5.6e-15 85.5 56 67.9
BcaB01g05242 Brassica carinata HOM05D004822 ORTHO05D005632 7.4e-15 85.1 68 63.2
C03p09170 Brassica napus HOM05D004822 ORTHO05D005632 7.4e-15 85.1 68 63.2
ECA232G1387 Erigeron canadensis HOM05D004822 ORTHO05D005632 7.4e-15 85.1 63 65.1
Nitab4.5_0000021g0700 Nicotiana tabacum HOM05D004822 ORTHO05D005632 7.4e-15 85.1 58 70.7
THA.LOC104820895 Tarenaya hassleriana HOM05D004822 ORTHO05D005632 7.4e-15 85.1 65 63.1
Lsat_1_v5_gn_9_47720 Lactuca sativa HOM05D004822 ORTHO05D005632 9.6e-15 84.7 58 65.5
Nitab4.5_0004530g0010 Nicotiana tabacum HOM05D004822 ORTHO05D005632 9.6e-15 84.7 58 69.0
Manes.09G127500 Manihot esculenta HOM05D004822 ORTHO05D005632 1.3e-14 84.3 56 66.1
TAR362G0773 Trochodendron aralioides HOM05D004822 ORTHO05D005632 1.3e-14 84.3 60 65.0
Glyma.01G233200 Glycine max HOM05D004822 ORTHO05D005632 1.6e-14 84.0 56 67.9
Hund09803 Selenicereus undatus HOM05D004822 ORTHO05D005632 1.6e-14 84.0 54 70.4
THA.LOC104827203 Tarenaya hassleriana HOM05D004822 ORTHO05D005632 1.6e-14 84.0 72 58.3
unitig_747.g21929 Utricularia gibba HOM05D004822 ORTHO05D005632 1.6e-14 84.0 55 72.7
CiPaw.05G216100 Carya illinoinensis HOM05D004822 ORTHO05D005632 2.1e-14 83.6 56 67.9
RcHm_v2.0_Chr1g0384361 Rosa chinensis HOM05D004822 ORTHO05D005632 2.1e-14 83.6 80 51.2
Peaxi162Scf00133g00611 Petunia axillaris HOM05D004822 ORTHO05D005632 2.8e-14 83.2 51 70.6
SalBow4G2092 Salvia bowleyana HOM05D004822 ORTHO05D005632 2.8e-14 83.2 57 63.2
SalBow4G3298 Salvia bowleyana HOM05D004822 ORTHO05D005632 2.8e-14 83.2 57 63.2
CiPaw.06G034300 Carya illinoinensis HOM05D004822 ORTHO05D005632 6.2e-14 82.0 60 63.3
Psat2g189120 Pisum sativum HOM05D004822 ORTHO05D005632 6.2e-14 82.0 70 60.0
A03p07960 Brassica napus HOM05D004822 ORTHO05D005632 8.1e-14 81.6 55 69.1
BraA03t10121Z Brassica rapa HOM05D004822 ORTHO05D005632 8.1e-14 81.6 55 69.1
ClCG09G016920 Citrullus lanatus HOM05D004822 ORTHO05D005632 8.1e-14 81.6 48 77.1
Aa31LG11G12780 Aethionema arabicum HOM05D004822 ORTHO05D005632 1.1e-13 81.3 65 58.5
BcaC04g18845 Brassica carinata HOM05D004822 ORTHO05D005632 1.1e-13 81.3 60 63.3
C09p60280 Brassica napus HOM05D004822 ORTHO05D005632 1.1e-13 81.3 60 63.3
Cfa016047 Carpinus fangiana HOM05D004822 ORTHO05D005632 1.1e-13 81.3 56 66.1
Glyma.11G009600 Glycine max HOM05D004822 ORTHO05D005632 1.4e-13 80.9 56 67.9
Atru.chr12.1891 Acer truncatum HOM05D004822 ORTHO05D005632 1.8e-13 80.5 56 64.3
CANSAT56G1711 Cannabis sativa HOM05D004822 ORTHO05D005632 1.8e-13 80.5 60 65.0
AUR62002079 Chenopodium quinoa HOM05D004822 ORTHO05D005632 2.4e-13 80.1 56 62.5
PGR042G2086 Punica granatum HOM05D004822 ORTHO05D005632 2.4e-13 80.1 72 58.3
Phvul.002G040700 Phaseolus vulgaris HOM05D004822 ORTHO05D005632 3.1e-13 79.7 54 68.5
Potri.019G050700 Populus trichocarpa HOM05D004822 ORTHO05D005632 4.0e-13 79.3 60 58.3
TWI12G0583 Tripterygium wilfordii HOM05D004822 ORTHO05D005632 4.0e-13 79.3 54 64.8
Carub.0003s0211 Capsella rubella HOM05D004822 ORTHO05D005632 5.3e-13 79.0 72 55.6
MELO3C021888.2 Cucumis melo HOM05D004822 ORTHO05D005632 5.3e-13 79.0 54 66.7
CsaV3_2G036410 Cucumis sativus L. HOM05D004822 ORTHO05D005632 5.3e-13 79.0 54 66.7
Sed0002247 Sechium edule HOM05D004822 ORTHO05D005632 5.3e-13 79.0 54 61.1
AT3G02980 Arabidopsis thaliana HOM05D004822 ORTHO05D005632 6.9e-13 78.6 62 59.7
TWI18G0151 Tripterygium wilfordii HOM05D004822 ORTHO05D005632 6.9e-13 78.6 77 54.5
Ciclev10021817m.g Citrus clementina HOM05D004822 ORTHO05D005632 9.0e-13 78.2 56 62.5
Eucgr.K00079 Eucalyptus grandis HOM05D004822 ORTHO05D005632 9.0e-13 78.2 55 65.5
Aa31LG5G13470 Aethionema arabicum HOM05D004822 ORTHO05D005632 1.2e-12 77.8 65 52.3
arahy.Tifrunner.gnm1.ann1.TC8PXF Arachis hypogaea HOM05D004822 ORTHO05D005632 1.2e-12 77.8 50 70.0
arahy.Tifrunner.gnm1.ann1.UL380H Arachis hypogaea HOM05D004822 ORTHO05D005632 1.2e-12 77.8 50 70.0
Ca_24437_v3 Cicer arietinum L. HOM05D004822 ORTHO05D005632 1.5e-12 77.4 50 72.0
LjContig00222g0020254 Lotus japonicus HOM05D004822 ORTHO05D005632 1.5e-12 77.4 56 64.3
Lalb_Chr01g0000881 Lupinus albus HOM05D004822 ORTHO05D005632 2.0e-12 77.0 56 66.1
Sed0007243 Sechium edule HOM05D004822 ORTHO05D005632 2.0e-12 77.0 54 64.8
ATR0829G204 Amborella trichopoda HOM05D004822 ORTHO05D005632 2.6e-12 76.6 49 71.4
arahy.Tifrunner.gnm1.ann1.IXL9K3 Arachis hypogaea HOM05D004822 ORTHO05D005632 2.6e-12 76.6 47 72.3
arahy.Tifrunner.gnm1.ann1.YEB8JM Arachis hypogaea HOM05D004822 ORTHO05D005632 3.4e-12 76.3 50 68.0
Eucgr.H04873 Eucalyptus grandis HOM05D004822 ORTHO05D005632 3.4e-12 76.3 51 66.7
Potri.013G079900 Populus trichocarpa HOM05D004822 ORTHO05D005632 3.4e-12 76.3 53 62.3
Sp3g02040 Schrenkiella parvula HOM05D004822 ORTHO05D005632 3.4e-12 76.3 60 58.3
Lalb_Chr19g0140001 Lupinus albus HOM05D004822 ORTHO05D005632 4.5e-12 75.9 49 71.4
Sabra13G0073000 Salix brachista HOM05D004822 ORTHO05D005632 4.5e-12 75.9 53 62.3
AL3G12440 Arabidopsis lyrata HOM05D004822 ORTHO05D005632 1.0e-11 74.7 60 56.7
A05p44150 Brassica napus HOM05D004822 ORTHO05D005632 1.0e-11 74.7 58 58.6
BraSC90t46695Z Brassica rapa HOM05D004822 ORTHO05D005632 1.0e-11 74.7 58 58.6
Medtr5g007400 Medicago truncatula HOM05D004822 ORTHO05D005632 1.0e-11 74.7 52 67.3
Zm00001eb251310 Zea mays HOM05D004822 ORTHO05D005632 1.0e-11 74.7 50 70.0
TPR.G37975 Trifolium pratense HOM05D004822 ORTHO05D005632 1.3e-11 74.3 52 65.4
Gorai.013G103600 Gossypium raimondii HOM05D004822 ORTHO05D005632 1.7e-11 73.9 61 60.7
HPP92_014856 Vanilla planifolia HOM05D004822 ORTHO05D005632 3.8e-11 72.8 60 58.3
arahy.Tifrunner.gnm1.ann1.KDM1H7 Arachis hypogaea HOM05D004822 ORTHO05D005632 6.5e-11 72.0 79 45.6
TAR374G1016 Trochodendron aralioides HOM05D004822 ORTHO05D005632 6.5e-11 72.0 60 58.3
Mapoly0133s0015 Marchantia polymorpha HOM05D004822 ORTHO05D005632 8.4e-11 71.6 52 55.8
SEGI_16512 Sequoiadendron giganteum HOM05D004822 ORTHO05D005632 8.4e-11 71.6 56 60.7
Actinidia08752 Actinidia chinensis HOM05D004822 ORTHO05D005632 3.2e-10 69.7 36 83.3
CBR_g57081 Chara braunii HOM05D004822 ORTHO05D005632 4.2e-10 69.3 50 64.0
SHI29591 Sapria himalayana HOM05D004822 ORTHO05D005632 4.2e-10 69.3 51 56.9
arahy.Tifrunner.gnm1.ann1.U456D3 Arachis hypogaea HOM05D004822 ORTHO05D005632 5.5e-10 68.9 63 50.8
Lj3g0022054 Lotus japonicus HOM05D004822 ORTHO05D005632 5.5e-10 68.9 52 59.6
SHI02573 Sapria himalayana HOM05D004822 ORTHO05D005632 7.1e-10 68.6 77 44.2
vmacro06508 Vaccinium macrocarpon HOM05D000193 ORTHO05D002695 2.7e-09 66.6 102 44.1
Pp3c21_19030 Physcomitrium patens HOM05D004822 ORTHO05D005632 3.5e-09 66.2 53 54.7
Pp3c19_16350 Physcomitrium patens HOM05D004822 ORTHO05D005632 7.9e-09 65.1 53 54.7
SMO146G0253 Selaginella moellendorffii HOM05D004822 ORTHO05D005632 3.9e-08 62.8 74 41.9
vmacro06369 Vaccinium macrocarpon HOM05D001816 ORTHO05D002001 3.9e-08 62.8 45 71.1
PGR142G2504 Punica granatum HOM05D004822 ORTHO05D005632 8.2e-06 55.1 49 53.1


User provided reference genes

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