Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro22106 Vaccinium macrocarpon HOM05D001087 ORTHO05D005406 0.0e+00 1454.9 748 100.0
Actinidia19533 Actinidia chinensis HOM05D001087 ORTHO05D005406 1.9e-272 942.6 751 68.3
CSS0025073 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D005406 7.9e-271 937.2 751 67.6
GSVIVG01032937001 Vitis vinifera HOM05D001087 ORTHO05D005406 5.5e-256 887.9 751 65.2
CiPaw.03G079200 Carya illinoinensis HOM05D001087 ORTHO05D005406 1.3e-252 876.7 751 63.6
Thecc.04G053100 Theobroma cacao HOM05D001087 ORTHO05D005406 1.7e-244 849.7 751 61.9
Rhsim08G0036900 Rhododendron simsii HOM05D001087 ORTHO05D005406 4.8e-244 848.2 740 65.4
Atru.chr6.2747 Acer truncatum HOM05D001087 ORTHO05D005406 3.1e-243 845.5 751 62.2
MD09G1000300 Malus domestica HOM05D001087 ORTHO05D005406 3.1e-243 845.5 752 61.6
RcHm_v2.0_Chr2g0176781 Rosa chinensis HOM05D001087 ORTHO05D005406 1.6e-242 843.2 751 61.0
TAR629G2385 Trochodendron aralioides HOM05D001087 ORTHO05D005406 4.5e-242 841.6 757 61.3
FvH4_6g54490 Fragaria vesca HOM05D001087 ORTHO05D005406 3.8e-241 838.6 751 61.1
COL.COLO4_13413 Corchorus olitorius HOM05D001087 ORTHO05D005406 5.0e-241 838.2 746 61.4
Gohir.A08G038200 Gossypium hirsutum HOM05D001087 ORTHO05D005406 1.8e-238 829.7 751 60.7
QL02p063912 Quercus lobata HOM05D001087 ORTHO05D005406 2.3e-238 829.3 813 57.8
PSO478G2418 Papaver somniferum HOM05D001087 ORTHO05D005406 8.8e-238 827.4 751 59.9
Gohir.D08G048400 Gossypium hirsutum HOM05D001087 ORTHO05D005406 2.6e-237 825.9 751 60.3
Gorai.004G047900 Gossypium raimondii HOM05D001087 ORTHO05D005406 5.7e-237 824.7 751 60.5
PSO017G2606 Papaver somniferum HOM05D001087 ORTHO05D005406 7.5e-237 824.3 751 59.9
Nn4g22026 Nelumbo nucifera HOM05D001087 ORTHO05D005406 1.8e-235 819.7 751 59.8
Ciclev10014134m.g Citrus clementina HOM05D001087 ORTHO05D005406 2.4e-235 819.3 749 61.1
Potri.014G141100 Populus trichocarpa HOM05D001087 ORTHO05D005406 4.1e-235 818.5 751 59.7
Manes.04G095500 Manihot esculenta HOM05D001087 ORTHO05D005406 2.0e-234 816.2 751 59.7
Phvul.001G097600 Phaseolus vulgaris HOM05D001087 ORTHO05D005406 7.2e-232 807.7 750 58.3
VMungo1383G1594 Vigna mungo HOM05D001087 ORTHO05D005406 6.1e-231 804.7 755 57.7
CANSAT64G1951 Cannabis sativa HOM05D001087 ORTHO05D005406 1.4e-230 803.5 754 58.2
Glyma.16G044400 Glycine max HOM05D001087 ORTHO05D005406 5.7e-229 798.1 751 57.5
Glyma.19G107500 Glycine max HOM05D001087 ORTHO05D005406 1.7e-228 796.6 751 56.9
Lj1g0002000 Lotus japonicus HOM05D001087 ORTHO05D005406 2.8e-228 795.8 751 56.6
TPR.G31052 Trifolium pratense HOM05D001087 ORTHO05D005406 5.9e-226 788.1 751 57.0
Aqoxy3G01996 Aquilegia oxysepala HOM05D001087 ORTHO05D005406 7.7e-226 787.7 750 57.1
MBI07_g11062_MAGBIO Magnolia biondii HOM05D001087 ORTHO05D005406 2.9e-225 785.8 751 57.9
Ca_08243_v3 Cicer arietinum L. HOM05D001087 ORTHO05D005406 1.2e-223 780.4 751 56.6
MELO3C014745.2 Cucumis melo HOM05D001087 ORTHO05D005406 2.7e-223 779.2 751 57.4
Sed0004915 Sechium edule HOM05D001087 ORTHO05D005406 1.0e-222 777.3 751 57.1
CsaV3_3G020140 Cucumis sativus L. HOM05D001087 ORTHO05D005406 6.8e-222 774.6 749 56.9
arahy.Tifrunner.gnm1.ann1.65DI7F Arachis hypogaea HOM05D001087 ORTHO05D005406 1.2e-221 773.9 750 56.1
TWI32G0903 Tripterygium wilfordii HOM05D001087 ORTHO05D005406 8.3e-220 767.7 753 55.9
Lalb_Chr14g0364241 Lupinus albus HOM05D001087 ORTHO05D005406 7.0e-219 764.6 750 55.9
arahy.Tifrunner.gnm1.ann1.C4QHPC Arachis hypogaea HOM05D001087 ORTHO05D005406 1.6e-218 763.5 779 54.3
Sopen02g039270 Solanum pennellii HOM05D001087 ORTHO05D005406 1.0e-217 760.8 760 55.3
Cc07_g01490 Coffea canephora HOM05D001087 ORTHO05D005406 2.3e-217 759.6 748 55.5
Prupe.3G316100 Prunus persica HOM05D001087 ORTHO05D005406 1.9e-216 756.5 680 60.9
Oeu062515.1 Olea europaea HOM05D001087 ORTHO05D005406 2.3e-214 749.6 754 56.0
Cpa.g.sc70.28 Carica papaya HOM05D001087 ORTHO05D005406 1.2e-213 747.3 735 56.6
ATR0582G201 Amborella trichopoda HOM05D001087 ORTHO05D005406 1.3e-212 743.8 751 55.4
Medtr7g084880 Medicago truncatula HOM05D001087 ORTHO05D005406 2.2e-212 743.0 751 54.7
Thhalv10006676m.g Eutrema salsugineum HOM05D001087 ORTHO05D005406 7.0e-211 738.0 754 54.5
Carub.0001s1270 Capsella rubella HOM05D001087 ORTHO05D005406 2.7e-210 736.1 756 53.8
Lsat_1_v5_gn_3_103380 Lactuca sativa HOM05D001087 ORTHO05D005406 2.7e-210 736.1 743 55.5
THA.LOC104805290 Tarenaya hassleriana HOM05D001087 ORTHO05D005406 3.5e-210 735.7 754 54.5
ECA246G3450 Erigeron canadensis HOM05D001087 ORTHO05D005406 3.9e-209 732.3 751 54.2
Duzib138G0185 Durio zibethinus HOM05D001087 ORTHO05D005406 1.2e-207 727.2 754 55.3
AL1G24570 Arabidopsis lyrata HOM05D001087 ORTHO05D005406 8.0e-207 724.5 756 53.2
Sp1g11500 Schrenkiella parvula HOM05D001087 ORTHO05D005406 3.1e-206 722.6 753 53.4
HanXRQChr17g0550851 Helianthus annuus HOM05D001087 ORTHO05D005406 5.2e-206 721.8 749 53.9
PGR042G1457 Punica granatum HOM05D001087 ORTHO05D005406 2.6e-205 719.5 753 53.8
AT1G12930 Arabidopsis thaliana HOM05D001087 ORTHO05D005406 3.4e-205 719.2 754 52.9
Aa31LG1G1850 Aethionema arabicum HOM05D001087 ORTHO05D005406 1.3e-204 717.2 780 52.3
Migut.F00007 Erythranthe guttata HOM05D001087 ORTHO05D005406 1.1e-203 714.1 752 52.8
BraA09t41703Z Brassica rapa HOM05D001087 ORTHO05D005406 1.2e-202 710.7 754 52.5
A09p63520 Brassica napus HOM05D001087 ORTHO05D005406 1.6e-202 710.3 754 52.4
C08p47020 Brassica napus HOM05D001087 ORTHO05D005406 6.0e-202 708.4 755 52.7
Eucgr.G01904 Eucalyptus grandis HOM05D001087 ORTHO05D005406 2.5e-200 703.0 710 55.2
BolC8t52241H Brassica oleracea HOM05D001087 ORTHO05D005406 2.9e-196 689.5 751 51.8
BcaB08g34240 Brassica carinata HOM05D001087 ORTHO05D005406 1.6e-194 683.7 740 52.2
MSTRG.3036 Avicennia marina HOM05D001087 ORTHO05D005406 7.3e-192 674.9 748 51.6
HPP92_021688 Vanilla planifolia HOM05D001087 ORTHO05D005406 8.1e-191 671.4 754 49.3
Hund04150 Selenicereus undatus HOM05D001087 ORTHO05D005406 1.1e-187 661.0 679 54.8
SalBow4G1044 Salvia bowleyana HOM05D001087 ORTHO05D005406 1.2e-186 657.5 796 48.4
AUR62032520 Chenopodium quinoa HOM05D001087 ORTHO05D005406 2.7e-186 656.4 753 51.0
Ah.02g128690 Amaranthus hybridus HOM05D001087 ORTHO05D005406 7.8e-186 654.8 791 49.6
SGA_v2.0_scaffold44G16961 Striga asiatica HOM05D001087 ORTHO05D005406 1.2e-183 647.5 736 49.7
AUR62017451 Chenopodium quinoa HOM05D001087 ORTHO05D005406 6.9e-182 641.7 777 49.2
BcaC05g25140 Brassica carinata HOM05D001087 ORTHO05D005406 2.4e-179 633.3 758 49.2
Zm00001eb197740 Zea mays HOM05D001087 ORTHO05D005406 3.2e-179 632.9 762 47.2
Sabra14G0106400 Salix brachista HOM05D001087 ORTHO05D005406 8.7e-177 624.8 793 48.3
ClCG05G012390 Citrullus lanatus HOM05D001087 ORTHO05D005406 1.1e-174 617.8 661 54.2
Nitab4.5_0002901g0060 Nicotiana tabacum HOM05D001087 ORTHO05D005406 2.3e-169 600.1 669 52.0
CDE05G0125 Ceratophyllum demersum HOM05D001087 ORTHO05D005406 3.4e-165 586.3 746 44.8
EL10Ac6g13922 Beta vulgaris HOM05D001087 ORTHO05D005406 1.6e-162 577.4 839 44.5
Sc16g0004210 Simmondsia chinensis HOM05D001087 ORTHO05D005406 2.5e-160 570.1 567 56.3
CAN.G473.166 Capsicum annuum HOM05D001087 ORTHO05D005406 1.6e-154 550.8 504 57.5
Solyc02g094610.1 Solanum lycopersicum HOM05D001087 ORTHO05D005406 1.5e-152 544.3 569 53.8
A06p08730 Brassica napus HOM05D001087 ORTHO05D005406 1.2e-149 534.6 698 46.1
FAN27G2264 Fragaria x ananassa HOM05D001087 ORTHO05D005406 3.9e-137 493.0 745 42.4
Mapoly0055s0098 Marchantia polymorpha HOM05D001087 ORTHO05D005406 7.4e-136 488.8 755 40.4
C05p10320 Brassica napus HOM05D001087 ORTHO05D005406 3.7e-135 486.5 723 43.3
FAN05G2313 Fragaria x ananassa HOM05D001087 ORTHO05D005406 7.7e-133 478.8 745 41.3
Pp3c10_7760 Physcomitrium patens HOM05D001087 ORTHO05D005406 6.1e-130 469.2 754 39.4
Lj7A620G39 Lonicera japonica HOM05D001087 ORTHO05D005406 1.4e-126 458.0 420 60.5
Pp3c14_8290 Physcomitrium patens HOM05D001087 ORTHO05D005406 2.5e-123 447.2 757 37.4
Pp3c14_8293 Physcomitrium patens HOM05D001087 ORTHO05D005406 2.5e-123 447.2 757 37.4
Haze_14336 Corylus avellana HOM05D001087 ORTHO05D005406 2.0e-120 437.6 397 60.7
FAN14G5757 Fragaria x ananassa HOM05D001087 ORTHO05D005406 2.4e-118 430.6 417 57.1
Psat0s4626g0040 Pisum sativum HOM05D001087 ORTHO05D005406 4.1e-118 429.9 376 59.8
DCAR_000957 Daucus carota HOM05D001087 ORTHO05D005406 1.0e-105 388.7 432 49.5
Haze_14337 Corylus avellana HOM05D001087 ORTHO05D005406 2.6e-104 384.0 304 67.8
HPP92_021716 Vanilla planifolia HOM05D001087 ORTHO05D005406 9.8e-104 382.1 475 45.9
HPP92_021631 Vanilla planifolia HOM05D001087 ORTHO05D005406 2.6e-88 330.9 435 44.6
Psat0s4626g0080 Pisum sativum HOM05D001087 ORTHO05D005406 5.6e-75 286.6 317 51.1
BcaC05g25411 Brassica carinata HOM05D001087 ORTHO05D005406 5.8e-72 276.6 391 44.5
BolC5t29778H Brassica oleracea HOM05D001087 ORTHO05D005406 3.8e-71 273.9 326 47.9
DCAR_000958 Daucus carota HOM05D001087 ORTHO05D005406 3.2e-70 270.8 209 67.5
Peaxi162Scf00420g00943 Petunia axillaris HOM05D001087 ORTHO05D005406 6.0e-69 266.5 229 62.0
Peaxi162Scf00420g00935 Petunia axillaris HOM05D001087 ORTHO05D005406 4.3e-67 260.4 315 48.9
SMO353G0092 Selaginella moellendorffii HOM05D001087 ORTHO05D005406 9.0e-65 252.7 713 29.6
Thhalv10017610m.g Eutrema salsugineum HOM05D001087 ORTHO05D005406 6.6e-60 236.5 422 37.9
CBR_g30317 Chara braunii HOM05D001087 ORTHO05D005406 8.1e-58 229.6 762 25.3
SEGI_07003 Sequoiadendron giganteum HOM05D001087 ORTHO05D005406 6.4e-55 219.9 323 40.6
Solyc02g094600.2 Solanum lycopersicum HOM05D001087 ORTHO05D005406 1.1e-54 219.2 194 59.3
HPP92_021630 Vanilla planifolia HOM05D001087 ORTHO05D005406 6.2e-42 176.8 160 55.6
CARHR013280 Cardamine hirsuta HOM05D001087 ORTHO05D005406 3.9e-36 157.5 129 58.9
Glyma.04G126700 Glycine max HOM05D001087 ORTHO05D005406 3.9e-36 157.5 186 47.8
Nitab4.5_0000519g0380 Nicotiana tabacum HOM05D001087 ORTHO05D005406 8.7e-36 156.4 224 43.8
Nitab4.5_0005199g0050 Nicotiana tabacum HOM05D001087 ORTHO05D005406 2.5e-35 154.8 263 38.8
SEGI_28776 Sequoiadendron giganteum HOM05D001087 ORTHO05D005406 3.4e-32 144.4 110 60.9
Glyma.09G128151 Glycine max HOM05D001087 ORTHO05D005406 1.3e-31 142.5 156 49.4
Nitab4.5_0000519g0370 Nicotiana tabacum HOM05D001087 ORTHO05D005406 3.8e-31 141.0 190 43.7
C05p12870 Brassica napus HOM05D001087 ORTHO05D005406 1.6e-29 135.6 148 50.0
BolC5t30034H Brassica oleracea HOM05D001087 ORTHO05D005406 1.6e-29 135.6 148 50.0
FAN14G5433 Fragaria x ananassa HOM05D001087 ORTHO05D005406 1.8e-28 132.1 92 69.6
Nitab4.5_0000136g0080 Nicotiana tabacum HOM05D001087 ORTHO05D005406 1.1e-27 129.4 257 33.9
Eucgr.H05015 Eucalyptus grandis HOM05D001087 ORTHO05D005406 3.3e-27 127.9 90 70.0
Peaxi162Scf00420g00936 Petunia axillaris HOM05D001087 ORTHO05D005406 1.8e-25 122.1 94 64.9
HPP92_021715 Vanilla planifolia HOM05D001087 ORTHO05D005406 3.4e-24 117.9 110 51.8
RcHm_v2.0_Chr7g0218031 Rosa chinensis HOM05D001087 ORTHO05D005406 5.9e-24 117.1 185 40.0
RcHm_v2.0_Chr4g0437621 Rosa chinensis HOM05D001801 ORTHO05D001739 1.2e-21 109.4 148 48.6
Lsat_1_v5_gn_5_71520 Lactuca sativa HOM05D000842 ORTHO05D000650 2.6e-19 101.7 97 61.9
Os11g0543800 Oryza sativa ssp. japonica HOM05D001087 ORTHO05D005406 3.4e-16 91.3 73 50.7
ClCG05G012380 Citrullus lanatus HOM05D001087 ORTHO05D005406 5.0e-15 87.4 76 59.2
RcHm_v2.0_Chr1g0366171 Rosa chinensis HOM05D001087 ORTHO05D017953 7.2e-14 83.6 177 32.2
Lj7C620T11 Lonicera japonica HOM05D001087 ORTHO05D005406 1.2e-13 82.8 145 37.9
Psat0s3545g0040 Pisum sativum HOM05D001087 ORTHO05D005406 4.7e-13 80.9 70 57.1
BraA06t24070Z Brassica rapa HOM05D001087 ORTHO05D005406 1.1e-09 69.7 77 46.8
FvH4_4g08541 Fragaria vesca HOM05D011771 ORTHO05D014214 3.1e-09 68.2 54 68.5
FvH4_6g39362 Fragaria vesca HOM05D011771 ORTHO05D014214 3.5e-08 64.7 54 66.7


User provided reference genes

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