Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro22036 Vaccinium macrocarpon HOM05D005576 ORTHO05D007010 0.0e+00 1923.3 985 100.0
Rhsim12G0210100 Rhododendron simsii HOM05D005576 ORTHO05D007010 0.0e+00 1745.7 977 91.7
Actinidia26024 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1670.2 992 85.5
Dinv20428 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1587.8 972 83.2
TAR626G1694 Trochodendron aralioides HOM05D005576 ORTHO05D007010 0.0e+00 1555.4 994 78.8
PGSC0003DMG400022883 Solanum tuberosum HOM05D005576 ORTHO05D007010 0.0e+00 1545.0 993 77.9
Sopen03g041140 Solanum pennellii HOM05D005576 ORTHO05D007010 0.0e+00 1540.4 993 77.8
CSS0000574 Camellia sinensis var. sinensis HOM05D005576 ORTHO05D007010 0.0e+00 1539.6 994 78.6
Manes.11G019400 Manihot esculenta HOM05D005576 ORTHO05D007010 0.0e+00 1531.5 995 78.1
CAN.G668.41 Capsicum annuum HOM05D005576 ORTHO05D007010 0.0e+00 1531.2 992 77.3
Nitab4.5_0004422g0040 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1525.0 981 78.1
Dinv37863 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1523.8 1017 77.6
Nitab4.5_0002898g0010 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1521.1 981 77.4
GSVIVG01016742001 Vitis vinifera HOM05D005576 ORTHO05D007010 0.0e+00 1518.4 995 77.4
Prupe.3G039600 Prunus persica HOM05D005576 ORTHO05D007010 0.0e+00 1515.0 992 78.0
Haze_16039 Corylus avellana HOM05D005576 ORTHO05D007010 0.0e+00 1511.1 992 76.9
Actinidia25327 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1506.1 897 84.8
Lj5C36G17 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1496.9 987 76.8
Nn8g38631 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1495.3 994 76.3
CiPaw.01G218000 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1494.6 992 76.5
Lsat_1_v5_gn_4_93500 Lactuca sativa HOM05D005576 ORTHO05D007010 0.0e+00 1493.0 989 75.5
Atru.chr1.3999 Acer truncatum HOM05D005576 ORTHO05D007010 0.0e+00 1490.3 992 76.1
Cc04_g01260 Coffea canephora HOM05D005576 ORTHO05D007010 0.0e+00 1489.2 993 75.5
QL05p004145 Quercus lobata HOM05D005576 ORTHO05D007010 0.0e+00 1484.2 992 75.6
HanXRQChr09g0276901 Helianthus annuus HOM05D005576 ORTHO05D007010 0.0e+00 1481.5 992 74.8
Peaxi162Scf00038g02138 Petunia axillaris HOM05D005576 ORTHO05D007010 0.0e+00 1481.5 1076 71.1
MD09G1181500 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1481.1 992 75.8
THA.LOC104808055 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1480.3 992 74.6
TWI31G0259 Tripterygium wilfordii HOM05D005576 ORTHO05D007010 0.0e+00 1478.0 992 74.4
COL.COLO4_30746 Corchorus olitorius HOM05D005576 ORTHO05D007010 0.0e+00 1477.2 992 75.6
Potri.003G066200 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1473.4 995 74.8
RcHm_v2.0_Chr2g0145781 Rosa chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1471.4 992 75.3
Aqoxy7G04073 Aquilegia oxysepala HOM05D005576 ORTHO05D007010 0.0e+00 1470.7 994 74.7
Migut.I01082 Erythranthe guttata HOM05D005576 ORTHO05D007010 0.0e+00 1470.7 992 74.8
ECA232G2029 Erigeron canadensis HOM05D005576 ORTHO05D007010 0.0e+00 1468.8 992 74.8
FvH4_6g34890 Fragaria vesca HOM05D005576 ORTHO05D007010 0.0e+00 1468.0 992 74.8
Potri.001G168100 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1467.2 993 74.8
MD17G1167700 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1462.6 992 74.6
Thecc.06G121300 Theobroma cacao HOM05D005576 ORTHO05D007010 0.0e+00 1461.4 992 75.4
Sc15g0000400 Simmondsia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1459.1 992 74.8
FAN09G4405 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1458.7 992 74.4
Oeu000412.2 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1456.4 988 74.4
Duzib235G0347 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1453.3 992 74.1
CiPaw.02G135100 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1451.4 992 73.8
DCAR_026415 Daucus carota HOM05D005576 ORTHO05D007010 0.0e+00 1450.6 962 75.7
CANSAT56G3183 Cannabis sativa HOM05D005576 ORTHO05D007010 0.0e+00 1449.1 992 73.4
Nn6g35707 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1448.7 994 73.5
Ah.08g216850 Amaranthus hybridus HOM05D005576 ORTHO05D007010 0.0e+00 1441.0 989 73.5
VMungo1309G3067 Vigna mungo HOM05D005576 ORTHO05D007010 0.0e+00 1440.2 993 73.6
Sabra03G0038700 Salix brachista HOM05D005576 ORTHO05D007010 0.0e+00 1437.6 963 75.6
ClCG09G001010 Citrullus lanatus HOM05D005576 ORTHO05D007010 0.0e+00 1437.2 1006 73.0
CsaV3_7G034420 Cucumis sativus L. HOM05D005576 ORTHO05D007010 0.0e+00 1437.2 993 73.2
Ciclev10024809m.g Citrus clementina HOM05D005576 ORTHO05D007010 0.0e+00 1434.5 992 74.4
MELO3C024350.2 Cucumis melo HOM05D005576 ORTHO05D007010 0.0e+00 1433.7 993 73.1
Thhalv10018070m.g Eutrema salsugineum HOM05D005576 ORTHO05D007010 0.0e+00 1433.3 992 72.4
Glyma.19G263400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1432.9 992 73.7
Gorai.011G059500 Gossypium raimondii HOM05D005576 ORTHO05D007010 0.0e+00 1432.9 992 73.7
Aa31LG4G2910 Aethionema arabicum HOM05D005576 ORTHO05D007010 0.0e+00 1428.3 993 72.0
EL10Ac7g16417 Beta vulgaris HOM05D005576 ORTHO05D007010 0.0e+00 1424.8 994 72.8
Gohir.A10G053800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1424.8 992 73.4
MSTRG.4792 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1420.2 993 73.0
SGA_v2.0_scaffold71G23839 Striga asiatica HOM05D005576 ORTHO05D007010 0.0e+00 1420.2 992 72.6
AT1G72560 Arabidopsis thaliana HOM05D005576 ORTHO05D007010 0.0e+00 1419.4 992 71.9
Oeu015487.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1418.7 962 74.9
Lalb_Chr04g0261101 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1417.9 993 72.7
Lalb_Chr15g0076791 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1416.7 993 72.2
PGR102G0536 Punica granatum HOM05D005576 ORTHO05D007010 0.0e+00 1414.1 999 73.2
Sed0003060 Sechium edule HOM05D005576 ORTHO05D007010 0.0e+00 1414.1 993 72.3
Ca_09568_v3 Cicer arietinum L. HOM05D005576 ORTHO05D007010 0.0e+00 1406.3 992 71.5
CARHR065500 Cardamine hirsuta HOM05D005576 ORTHO05D007010 0.0e+00 1399.0 992 71.0
MBI13_g12059_MAGBIO Magnolia biondii HOM05D005576 ORTHO05D007010 0.0e+00 1398.6 994 71.4
Carub.0002s1942 Capsella rubella HOM05D005576 ORTHO05D007010 0.0e+00 1395.6 992 70.4
Psat3g000040 Pisum sativum HOM05D005576 ORTHO05D007010 0.0e+00 1395.6 992 70.5
THA.LOC104812251 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1392.1 992 70.6
Lj1g0011724 Lotus japonicus HOM05D005576 ORTHO05D007010 0.0e+00 1389.4 992 70.9
TPR.G28874 Trifolium pratense HOM05D005576 ORTHO05D007010 0.0e+00 1387.9 992 70.5
Gohir.D10G055800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1384.8 962 73.4
AL2G32250 Arabidopsis lyrata HOM05D005576 ORTHO05D007010 0.0e+00 1379.0 992 70.5
SalBow6G0288 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1377.8 978 71.2
SalBow6G5091 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1377.8 978 71.2
Glyma.03G264400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1363.6 993 71.1
Sp5g27640 Schrenkiella parvula HOM05D005576 ORTHO05D007010 0.0e+00 1363.6 992 69.8
Medtr7g117565 Medicago truncatula HOM05D005576 ORTHO05D007010 0.0e+00 1361.3 995 68.6
MSTRG.10949 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1351.7 992 70.3
FAN14G0396 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1342.8 920 73.9
FAN02G3375 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1342.0 988 70.0
PSO421G0066 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1337.0 1004 68.0
Duzib160G0875 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1336.6 995 69.4
Solyc03g122370.4 Solanum lycopersicum HOM05D005576 ORTHO05D007010 0.0e+00 1334.3 992 69.5
BolC6t39733H Brassica oleracea HOM05D005576 ORTHO05D007010 0.0e+00 1331.2 994 68.0
C06p46920 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1326.6 994 67.8
A07p38760 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1326.2 993 67.9
BraA07t31429Z Brassica rapa HOM05D005576 ORTHO05D007010 0.0e+00 1321.6 994 67.9
PSO063G0826 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1318.1 994 68.0
arahy.Tifrunner.gnm1.ann1.E27NE4 Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1314.3 996 67.7
Hund18687 Selenicereus undatus HOM05D005576 ORTHO05D007010 0.0e+00 1313.1 951 70.7
arahy.Tifrunner.gnm1.ann1.W8MD5J Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1303.5 1026 66.0
ATR0598G079 Amborella trichopoda HOM05D005576 ORTHO05D007010 0.0e+00 1267.3 971 66.1
AUR62001476 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1263.4 963 67.1
Oeu015486.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1256.9 862 74.6
Lj9A532T67 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1248.4 911 71.6
CDE05G1788 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 0.0e+00 1201.4 994 60.7
AUR62009889 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1136.3 1000 60.8
Eucgr.F04406 Eucalyptus grandis HOM05D005576 ORTHO05D007010 4.3e-309 1064.7 910 61.8
CDE11G0151 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 1.0e-302 1043.5 994 54.8
Phvul.009G263000 Phaseolus vulgaris HOM05D005576 ORTHO05D007010 8.7e-302 1040.4 724 73.6
Actinidia27733 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.0e-297 1026.9 611 85.1
Actinidia26822 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.9e-293 1012.7 598 85.6
Mapoly0019s0146 Marchantia polymorpha HOM05D005576 ORTHO05D007010 3.1e-283 978.8 999 50.3
Pp3c12_21910 Physcomitrium patens HOM05D005576 ORTHO05D007010 5.5e-280 968.0 997 49.3
Zm00001eb109040 Zea mays HOM05D005576 ORTHO05D007010 7.9e-279 964.1 1002 51.4
Zm00001eb327340 Zea mays HOM05D005576 ORTHO05D007010 3.9e-278 961.8 1002 51.4
Os07g0613300 Oryza sativa ssp. japonica HOM05D005576 ORTHO05D007010 5.5e-272 941.4 1003 50.6
unitig_899.g14764 Utricularia gibba HOM05D005576 ORTHO05D007010 2.7e-263 912.5 838 57.8
FAN05G3283 Fragaria x ananassa HOM05D005576 ORTHO05D007010 6.3e-252 874.8 609 73.2
HPP92_026306 Vanilla planifolia HOM05D005576 ORTHO05D007010 1.1e-248 864.0 743 59.9
SMO141G0108 Selaginella moellendorffii HOM05D005576 ORTHO05D007010 6.1e-247 858.2 982 46.3
SEGI_13199 Sequoiadendron giganteum HOM05D005576 ORTHO05D007010 1.8e-246 856.7 810 54.3
AagrBONN_evm.TU.Sc2ySwM_344.1866 Anthoceros agrestis HOM05D005576 ORTHO05D007010 4.3e-216 755.7 909 43.7
CBR_g44922 Chara braunii HOM05D005576 ORTHO05D007010 1.1e-206 724.5 1080 37.9
Cpa.g.sc589.4 Carica papaya HOM05D005576 ORTHO05D007010 9.3e-187 658.3 429 77.4
Aa31LG4G2950 Aethionema arabicum HOM05D005576 ORTHO05D007010 2.0e-149 534.3 356 74.2
Dinv20426 Davidia involucrata HOM05D005576 ORTHO05D007010 1.0e-145 521.9 304 83.2
Cpa.g.sc1732.1 Carica papaya HOM05D005576 ORTHO05D007010 1.8e-142 511.1 314 79.3
Cre12.g496200 Chlamydomonas reinhardtii HOM05D005576 ORTHO05D007010 1.2e-117 428.7 1101 30.1
Actinidia26823 Actinidia chinensis HOM05D005576 ORTHO05D007010 4.6e-101 373.6 266 73.3
Actinidia27734 Actinidia chinensis HOM05D005576 ORTHO05D007010 4.6e-101 373.6 266 73.3
MCO02G354 Micromonas commoda HOM05D005576 ORTHO05D007010 7.1e-78 296.6 1078 26.9
HPP92_026305 Vanilla planifolia HOM05D005576 ORTHO05D007010 2.6e-56 224.9 242 49.6
PRCOL_00005439 Prasinoderma coloniale HOM05D005576 ORTHO05D007010 2.0e-40 172.2 958 22.9
C02p30110 Brassica napus HOM05D005576 ORTHO05D007010 1.4e-33 149.4 141 55.3
BcaB05g24764 Brassica carinata HOM05D005576 ORTHO05D007010 3.5e-32 144.8 119 65.5
unitig_899.g14765 Utricularia gibba HOM05D005576 ORTHO05D007010 1.7e-31 142.5 109 63.3
BolC2t09060H Brassica oleracea HOM05D005576 ORTHO05D007010 1.6e-29 136.0 140 52.9
BcaB05g24763 Brassica carinata HOM05D000046 ORTHO05D000457 1.2e-24 119.8 85 69.4
SalBow5G4342 Salvia bowleyana HOM05D003448 ORTHO05D004028 7.0e-17 94.0 91 56.0
A02p18080 Brassica napus HOM05D005576 ORTHO05D041195 4.3e-06 58.2 45 66.7
BraA02t06855Z Brassica rapa HOM05D005576 ORTHO05D041195 4.3e-06 58.2 45 66.7
Sabra01G0142500 Salix brachista HOM05D005576 ORTHO05D007010 9.5e-06 57.0 49 53.1


User provided reference genes

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