Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro22018 Vaccinium macrocarpon HOM05D006122 ORTHO05D007426 9.0e-303 1042.7 505 100.0
Rhsim12G0212300 Rhododendron simsii HOM05D006122 ORTHO05D007426 4.0e-125 452.6 275 82.2
CSS0025263 Camellia sinensis var. sinensis HOM05D006122 ORTHO05D007426 4.3e-119 432.6 236 86.9
Actinidia26007 Actinidia chinensis HOM05D006122 ORTHO05D007426 6.2e-118 428.7 238 86.1
Dinv37838 Davidia involucrata HOM05D006122 ORTHO05D007426 8.9e-117 424.9 238 84.9
Eucgr.J02608 Eucalyptus grandis HOM05D006122 ORTHO05D007426 1.2e-116 424.5 238 85.3
Ciclev10026416m.g Citrus clementina HOM05D006122 ORTHO05D007426 1.3e-115 421.0 237 81.9
Hma1.2p1_0229F.1_g096920 Hydrangea macrophylla HOM05D006122 ORTHO05D007426 1.1e-114 417.9 236 83.9
Manes.11G015100 Manihot esculenta HOM05D006122 ORTHO05D007426 1.1e-114 417.9 238 83.6
Sabra10G0032200 Salix brachista HOM05D000989 ORTHO05D001287 2.4e-114 416.8 252 78.6
Cfa003494 Carpinus fangiana HOM05D006122 ORTHO05D007426 1.6e-113 414.1 238 83.2
PGR102G1167 Punica granatum HOM05D006122 ORTHO05D007426 1.6e-113 414.1 238 81.1
vmacro14277 Vaccinium macrocarpon HOM05D002531 ORTHO05D003018 2.7e-113 413.3 300 68.3
AUR62018816 Chenopodium quinoa HOM05D006122 ORTHO05D007426 3.5e-113 412.9 238 82.4
TAR383G0669 Trochodendron aralioides HOM05D006122 ORTHO05D007426 3.9e-112 409.5 238 81.1
Thecc.06G126900 Theobroma cacao HOM05D006122 ORTHO05D007426 1.1e-111 407.9 238 82.4
GSVIVG01016699001 Vitis vinifera HOM05D006122 ORTHO05D007426 1.1e-111 407.9 238 81.1
CANSAT56G0704 Cannabis sativa HOM05D006122 ORTHO05D007426 1.9e-111 407.1 238 78.2
Potri.010G076600 Populus trichocarpa HOM05D006122 ORTHO05D007426 4.3e-111 406.0 238 80.7
CiPaw.02G133000 Carya illinoinensis HOM05D006122 ORTHO05D007426 7.3e-111 405.2 236 81.4
QL05p002004 Quercus lobata HOM05D006122 ORTHO05D007426 9.5e-111 404.8 237 81.4
Prupe.3G035300 Prunus persica HOM05D006122 ORTHO05D007426 3.6e-110 402.9 238 80.3
MSTRG.22530 Avicennia marina HOM05D006122 ORTHO05D007426 1.4e-109 401.0 239 79.9
MD17G1150700 Malus domestica HOM05D006122 ORTHO05D007426 1.4e-109 401.0 239 79.5
COL.COLO4_30828 Corchorus olitorius HOM05D006122 ORTHO05D007426 6.8e-109 398.7 238 79.0
DCAR_022657 Daucus carota HOM05D006122 ORTHO05D007426 6.8e-109 398.7 238 80.7
Duzib235G1006 Durio zibethinus HOM05D006122 ORTHO05D007426 6.8e-109 398.7 238 79.8
Sed0027026 Sechium edule HOM05D006122 ORTHO05D007426 3.4e-108 396.4 238 77.7
Peaxi162Scf01003g00013 Petunia axillaris HOM05D006122 ORTHO05D007426 5.8e-108 395.6 237 78.1
TWI59G0171 Tripterygium wilfordii HOM05D006122 ORTHO05D007426 7.5e-108 395.2 238 78.2
RcHm_v2.0_Chr2g0146911 Rosa chinensis HOM05D006122 ORTHO05D007426 9.8e-108 394.8 238 79.8
Migut.I01117 Erythranthe guttata HOM05D006122 ORTHO05D007426 1.7e-107 394.0 239 77.0
MD09G1176300 Malus domestica HOM05D006122 ORTHO05D007426 1.7e-107 394.0 236 78.8
Gohir.A05G138000 Gossypium hirsutum HOM05D006122 ORTHO05D007426 2.2e-107 393.7 238 77.3
Hund14473 Selenicereus undatus HOM05D006122 ORTHO05D007426 6.4e-107 392.1 266 73.7
Gorai.009G144400 Gossypium raimondii HOM05D006122 ORTHO05D007426 8.3e-107 391.7 238 76.9
Cc04_g00910 Coffea canephora HOM05D006122 ORTHO05D007426 1.9e-106 390.6 241 75.9
Gohir.D05G140100 Gossypium hirsutum HOM05D006122 ORTHO05D007426 2.4e-106 390.2 238 76.9
HanXRQChr09g0277171 Helianthus annuus HOM05D006122 ORTHO05D007426 5.4e-106 389.0 240 76.2
ECA238G0672 Erigeron canadensis HOM05D006122 ORTHO05D007426 9.2e-106 388.3 240 76.2
FvH4_6g35380 Fragaria vesca HOM05D006122 ORTHO05D007426 6.0e-105 385.6 238 77.3
Solyc11g005060.2 Solanum lycopersicum HOM05D006122 ORTHO05D007426 6.0e-105 385.6 237 76.4
Os01g0727400 Oryza sativa ssp. japonica HOM05D006122 ORTHO05D007426 3.0e-104 383.3 240 74.2
ATR0068G105 Amborella trichopoda HOM05D006122 ORTHO05D007426 5.1e-104 382.5 236 75.4
CsaV3_4G002610 Cucumis sativus L. HOM05D006122 ORTHO05D007426 5.1e-104 382.5 238 73.9
Lalb_Chr10g0101271 Lupinus albus HOM05D006122 ORTHO05D007426 5.1e-104 382.5 236 76.7
AL1G29610 Arabidopsis lyrata HOM05D006122 ORTHO05D007426 8.6e-104 381.7 237 75.9
Glyma.07G043200 Glycine max HOM05D006122 ORTHO05D007426 8.6e-104 381.7 242 74.8
A06p13310 Brassica napus HOM05D006122 ORTHO05D007426 3.3e-103 379.8 237 75.1
Glyma.16G011600 Glycine max HOM05D006122 ORTHO05D007426 3.3e-103 379.8 240 75.0
Phvul.010G126800 Phaseolus vulgaris HOM05D006122 ORTHO05D007426 3.3e-103 379.8 239 75.7
VMungo0331G0398 Vigna mungo HOM05D006122 ORTHO05D007426 4.3e-103 379.4 239 75.7
AT1G17350 Arabidopsis thaliana HOM05D006122 ORTHO05D007426 5.6e-103 379.0 237 74.7
EL10Ac5g12242 Beta vulgaris HOM05D006122 ORTHO05D007426 5.6e-103 379.0 233 77.7
Aqoxy3G03460 Aquilegia oxysepala HOM05D006122 ORTHO05D007426 7.3e-103 378.6 237 73.8
Lj3g0011237 Lotus japonicus HOM05D006122 ORTHO05D007426 7.3e-103 378.6 239 74.9
Psat4g219480 Pisum sativum HOM05D006122 ORTHO05D007426 7.3e-103 378.6 239 73.2
CAN.G1227.1 Capsicum annuum HOM05D006122 ORTHO05D007426 9.5e-103 378.3 241 75.5
BraA06t24484Z Brassica rapa HOM05D006122 ORTHO05D007426 1.6e-102 377.5 236 74.6
Carub.0001s1711 Capsella rubella HOM05D006122 ORTHO05D007426 2.8e-102 376.7 237 74.7
unitig_32.g10995 Utricularia gibba HOM05D006122 ORTHO05D007426 2.8e-102 376.7 237 73.0
Sopen11g001060 Solanum pennellii HOM05D006122 ORTHO05D007426 4.7e-102 375.9 251 72.1
SGA_v2.0_scaffold71G23902 Striga asiatica HOM05D006122 ORTHO05D007426 4.7e-102 375.9 254 72.0
C05p15780 Brassica napus HOM05D006122 ORTHO05D007426 6.2e-102 375.6 237 74.7
BolC5t30283H Brassica oleracea HOM05D006122 ORTHO05D007426 6.2e-102 375.6 237 74.7
CARHR017950 Cardamine hirsuta HOM05D006122 ORTHO05D007426 6.2e-102 375.6 237 73.4
Lj5A31T62 Lonicera japonica HOM05D006122 ORTHO05D007426 8.1e-102 375.2 235 76.6
Thhalv10008577m.g Eutrema salsugineum HOM05D006122 ORTHO05D007426 2.3e-101 373.6 237 73.4
PSO063G2922 Papaver somniferum HOM05D006122 ORTHO05D007426 3.1e-101 373.2 235 74.9
Sp1g15490 Schrenkiella parvula HOM05D006122 ORTHO05D007426 3.1e-101 373.2 237 73.8
SpUn0033_0060 Schrenkiella parvula HOM05D006122 ORTHO05D007426 3.1e-101 373.2 237 73.8
Medtr8g022330 Medicago truncatula HOM05D006122 ORTHO05D007426 5.2e-101 372.5 238 72.7
Nitab4.5_0001168g0090 Nicotiana tabacum HOM05D006122 ORTHO05D007426 5.2e-101 372.5 221 77.8
Ah.07g199940 Amaranthus hybridus HOM05D006122 ORTHO05D007426 1.5e-100 370.9 219 79.0
Zm00001eb361800 Zea mays HOM05D006122 ORTHO05D007426 2.6e-100 370.2 240 73.3
PSO832G0128 Papaver somniferum HOM05D006122 ORTHO05D007426 5.8e-100 369.0 236 73.7
BcaNung07320 Brassica carinata HOM05D006122 ORTHO05D007426 9.9e-100 368.2 237 73.8
Ca_23414_v3 Cicer arietinum L. HOM05D006122 ORTHO05D007426 2.9e-99 366.7 228 75.0
THA.LOC104812266 Tarenaya hassleriana HOM05D006122 ORTHO05D007426 3.8e-99 366.3 240 71.7
HPP92_026812 Vanilla planifolia HOM05D006122 ORTHO05D007426 6.4e-99 365.5 237 69.6
MELO3C017781.2 Cucumis melo HOM05D006122 ORTHO05D007426 8.4e-99 365.2 221 76.9
Sp5g27490 Schrenkiella parvula HOM05D006122 ORTHO05D007426 2.4e-98 363.6 238 71.4
Lsat_1_v5_gn_8_4120 Lactuca sativa HOM05D006122 ORTHO05D007426 4.1e-98 362.8 241 71.4
AT1G72420 Arabidopsis thaliana HOM05D006122 ORTHO05D007426 9.2e-98 361.7 238 71.4
arahy.Tifrunner.gnm1.ann1.JC3XNH Arachis hypogaea HOM05D006122 ORTHO05D007426 2.7e-97 360.1 241 70.1
Carub.0002s1927 Capsella rubella HOM05D006122 ORTHO05D007426 6.0e-97 359.0 238 70.6
arahy.Tifrunner.gnm1.ann1.DIA1Z1 Arachis hypogaea HOM05D006122 ORTHO05D007426 7.8e-97 358.6 241 69.7
vmacro12391 Vaccinium macrocarpon HOM05D002531 ORTHO05D009515 3.3e-95 353.2 236 74.2
Thhalv10019098m.g Eutrema salsugineum HOM05D006122 ORTHO05D007426 1.2e-94 351.3 238 69.7
CARHR065320 Cardamine hirsuta HOM05D006122 ORTHO05D007426 1.4e-93 347.8 238 68.5
HPP92_000787 Vanilla planifolia HOM05D006122 ORTHO05D007426 2.6e-92 343.6 220 70.0
CDE02G1839 Ceratophyllum demersum HOM05D006122 ORTHO05D007426 1.9e-90 337.4 236 68.6
Oeu000384.1 Olea europaea HOM05D006122 ORTHO05D007426 4.5e-84 316.2 241 66.4
MBI13_g36947_MAGBIO Magnolia biondii HOM05D006122 ORTHO05D007426 2.9e-83 313.5 167 86.2
vmacro21251 Vaccinium macrocarpon HOM05D002531 ORTHO05D009515 3.5e-81 306.6 286 58.7
Aa31LG4G2750 Aethionema arabicum HOM05D006122 ORTHO05D007426 1.8e-80 304.3 227 64.8
AUR62007187 Chenopodium quinoa HOM05D006122 ORTHO05D007426 1.1e-79 301.6 274 58.0
Sc01g0007910 Simmondsia chinensis HOM05D006122 ORTHO05D007426 2.1e-78 297.4 157 89.2
vmacro11475 Vaccinium macrocarpon HOM05D007585 ORTHO05D009515 2.1e-78 297.4 272 59.2
A07p38600 Brassica napus HOM05D006122 ORTHO05D007426 4.5e-76 289.7 249 57.4
Duzib160G0673 Durio zibethinus HOM05D006122 ORTHO05D007426 5.8e-76 289.3 166 80.7
C06p46770 Brassica napus HOM05D006122 ORTHO05D007426 1.7e-75 287.7 238 59.2
BolC6t39721H Brassica oleracea HOM05D006122 ORTHO05D007426 3.8e-75 286.6 248 56.9
BraA07t31418Z Brassica rapa HOM05D006122 ORTHO05D007426 2.3e-72 277.3 276 51.8
TPR.G16670 Trifolium pratense HOM05D006122 ORTHO05D007426 2.3e-72 277.3 184 70.1
Haze_16093 Corylus avellana HOM05D006122 ORTHO05D007426 9.6e-71 271.9 286 55.9
Haze_16097 Corylus avellana HOM05D006122 ORTHO05D007426 9.6e-71 271.9 286 55.9
Nn1g04517 Nelumbo nucifera HOM05D006122 ORTHO05D007426 2.4e-69 267.3 238 58.4
FAN09G0799 Fragaria x ananassa HOM05D006122 ORTHO05D007426 1.2e-68 265.0 165 75.8
Aqoxy301s003 Aquilegia oxysepala HOM05D006122 ORTHO05D007426 4.5e-68 263.1 152 78.9
Cpa.g.sc25.169 Carica papaya HOM05D006122 ORTHO05D007426 1.7e-67 261.2 238 57.6
FAN14G0976 Fragaria x ananassa HOM05D006122 ORTHO05D007426 1.1e-63 248.4 241 55.2
AL2G32090 Arabidopsis lyrata HOM05D006122 ORTHO05D007426 1.8e-61 241.1 154 70.1
Pp3c3_21840 Physcomitrium patens HOM05D006122 ORTHO05D007426 1.5e-60 238.0 235 47.2
vmacro05185 Vaccinium macrocarpon HOM05D006429 ORTHO05D008173 9.3e-58 228.8 174 62.6
Nn4g23234 Nelumbo nucifera HOM05D006122 ORTHO05D007426 3.0e-56 223.8 148 70.9
BcaB03g14991 Brassica carinata HOM05D006122 ORTHO05D007426 2.5e-55 220.7 154 64.9
Mapoly0158s0026 Marchantia polymorpha HOM05D006122 ORTHO05D007426 9.7e-55 218.8 234 42.3
SalBow5G3255 Salvia bowleyana HOM05D006122 ORTHO05D007426 2.8e-54 217.2 238 50.8
SalBow5G2173 Salvia bowleyana HOM05D006122 ORTHO05D007426 1.4e-50 204.9 158 64.6
CBR_g33997 Chara braunii HOM05D006122 ORTHO05D007426 1.6e-49 201.4 238 39.5
SHI23560 Sapria himalayana HOM05D006122 ORTHO05D007426 1.4e-48 198.4 134 70.1
AagrBONN_evm.TU.Sc2ySwM_362.2335 Anthoceros agrestis HOM05D006122 ORTHO05D007426 1.2e-36 158.7 194 41.8
SEGI_37442 Sequoiadendron giganteum HOM05D006122 ORTHO05D007426 1.0e-35 155.6 106 67.9
SMO165G0005 Selaginella moellendorffii HOM05D006122 ORTHO05D007426 8.0e-33 146.0 210 33.8
vmacro08688 Vaccinium macrocarpon HOM05D007024 ORTHO05D008865 2.6e-31 141.0 111 66.7
Actinidia31156 Actinidia chinensis HOM05D006122 ORTHO05D007426 8.2e-30 136.0 98 70.4
CAN.G526.12 Capsicum annuum HOM05D006122 ORTHO05D007426 1.1e-26 125.6 177 43.5
TPR.G16651 Trifolium pratense HOM05D006122 ORTHO05D007426 1.4e-24 118.6 63 82.5
BcaB03g14993 Brassica carinata HOM05D006122 ORTHO05D007426 1.5e-23 115.2 70 72.9
MCO13G567 Micromonas commoda HOM05D006122 ORTHO05D007426 4.4e-23 113.6 285 28.1
Nn1g08880 Nelumbo nucifera HOM05D006122 ORTHO05D007426 5.7e-23 113.2 55 90.9
Cre02.g076750 Chlamydomonas reinhardtii HOM05D006122 ORTHO05D007426 3.1e-13 80.9 211 23.7
Actinidia31157 Actinidia chinensis HOM05D006122 ORTHO05D007426 1.0e-11 75.9 32 96.9
PRCOL_00002435 Prasinoderma coloniale HOM05D005310 ORTHO05D006920 8.9e-08 62.8 175 26.9
Hma1.2p1_2416F.1_g321740 Hydrangea macrophylla HOM05D005310 ORTHO05D006920 3.4e-07 60.8 181 25.4
Dinv12753 Davidia involucrata HOM05D005310 ORTHO05D006920 1.3e-06 58.9 177 26.0
Lj1A1175T55 Lonicera japonica HOM05D005310 ORTHO05D006920 2.2e-06 58.2 175 26.9
ECA248G0338 Erigeron canadensis HOM05D005310 ORTHO05D006920 2.9e-06 57.8 164 26.2
SMO119G0157 Selaginella moellendorffii HOM05D005310 ORTHO05D006920 3.7e-06 57.4 195 24.1


User provided reference genes

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