Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro21970 Vaccinium macrocarpon HOM05D007911 ORTHO05D009536 3.9e-238 827.8 438 100.0
Rhsim03G0028700 Rhododendron simsii HOM05D007911 ORTHO05D009536 1.1e-136 490.7 521 59.7
Actinidia09304 Actinidia chinensis HOM05D007911 ORTHO05D009536 1.7e-84 317.4 544 42.1
Actinidia39204 Actinidia chinensis HOM05D007911 ORTHO05D009536 5.2e-73 279.3 350 50.0
CSS0030068 Camellia sinensis var. sinensis HOM05D007911 ORTHO05D009536 1.0e-68 265.0 714 32.8
Hma1.2p1_0005F.1_g004500 Hydrangea macrophylla HOM05D007911 ORTHO05D009536 6.7e-28 129.4 223 40.4
Cfa016782 Carpinus fangiana HOM05D007911 ORTHO05D009536 1.4e-25 121.7 321 33.3
Haze_19798 Corylus avellana HOM05D007911 ORTHO05D009536 9.0e-25 119.0 170 42.9
Gohir.A01G130811 Gossypium hirsutum HOM05D007911 ORTHO05D009536 9.0e-25 119.0 332 32.2
Thecc.05G151800 Theobroma cacao HOM05D007911 ORTHO05D009536 1.5e-24 118.2 331 31.1
Gorai.002G146100 Gossypium raimondii HOM05D007911 ORTHO05D009536 2.0e-24 117.9 295 34.6
Duzib093G1996 Durio zibethinus HOM05D007911 ORTHO05D009536 2.6e-24 117.5 327 31.2
Gohir.D01G119650 Gossypium hirsutum HOM05D007911 ORTHO05D009536 1.0e-23 115.5 290 34.5
QL07p003623 Quercus lobata HOM05D007911 ORTHO05D009536 6.5e-23 112.8 277 35.0
Manes.08G052400 Manihot esculenta HOM05D007911 ORTHO05D009536 8.5e-23 112.5 210 38.1
Prupe.7G054000 Prunus persica HOM05D007911 ORTHO05D009536 7.2e-22 109.4 152 43.4
CiPaw.09G040100 Carya illinoinensis HOM05D007911 ORTHO05D009536 1.2e-21 108.6 241 33.6
Oeu035501.1 Olea europaea HOM05D007911 ORTHO05D009536 2.7e-21 107.5 130 44.6
TAR636G2018 Trochodendron aralioides HOM05D007911 ORTHO05D009536 2.7e-21 107.5 238 34.5
COL.COLO4_33204 Corchorus olitorius HOM05D007911 ORTHO05D009536 3.6e-21 107.1 340 32.1
Nitab4.5_0001618g0290 Nicotiana tabacum HOM05D017238 ORTHO05D009536 1.4e-20 105.1 123 46.3
Nitab4.5_0000826g0230 Nicotiana tabacum HOM05D017238 ORTHO05D009536 3.0e-20 104.0 122 45.1
PGR004G0024 Punica granatum HOM05D007911 ORTHO05D009536 3.0e-20 104.0 441 30.6
Ciclev10006879m.g Citrus clementina HOM05D007911 ORTHO05D009536 5.1e-20 103.2 117 45.3
Peaxi162Scf00130g00827 Petunia axillaris HOM05D017238 ORTHO05D009536 3.3e-19 100.5 114 44.7
Duzib106G0073 Durio zibethinus HOM05D007911 ORTHO05D009536 9.7e-19 99.0 122 47.5
SalBow6G1456 Salvia bowleyana HOM05D007911 ORTHO05D009536 9.7e-19 99.0 500 26.4
Atru.chr12.1999 Acer truncatum HOM05D007911 ORTHO05D009536 1.7e-18 98.2 309 32.7
Cpa.g.sc1210.2 Carica papaya HOM05D007911 ORTHO05D009536 1.7e-18 98.2 190 36.3
Potri.016G043300 Populus trichocarpa HOM05D007911 ORTHO05D009536 2.2e-18 97.8 312 32.1
Atru.chr1.1239 Acer truncatum HOM05D007911 ORTHO05D009536 2.8e-18 97.4 117 47.9
Potri.006G046700 Populus trichocarpa HOM05D007911 ORTHO05D009536 2.8e-18 97.4 326 31.9
CAN.G676.9 Capsicum annuum HOM05D017238 ORTHO05D009536 3.7e-18 97.1 137 41.6
CANSAT80G2434 Cannabis sativa HOM05D007911 ORTHO05D009536 4.8e-18 96.7 181 38.7
SalBow6G0990 Salvia bowleyana HOM05D007911 ORTHO05D009536 8.2e-18 95.9 493 25.8
MSTRG.6410 Avicennia marina HOM05D007911 ORTHO05D009536 1.8e-17 94.7 390 28.5
CANSAT80G1261 Cannabis sativa HOM05D007911 ORTHO05D009536 1.8e-17 94.7 181 38.1
Sabra06G0032200 Salix brachista HOM05D007911 ORTHO05D009536 5.3e-17 93.2 248 32.3
TWI77G0280 Tripterygium wilfordii HOM05D007911 ORTHO05D009536 1.2e-16 92.0 211 34.6
TPR.G18258 Trifolium pratense HOM05D007911 ORTHO05D009536 1.0e-15 89.0 170 35.9
SGA_v2.0_scaffold69G23124 Striga asiatica HOM05D007911 ORTHO05D009536 2.2e-15 87.8 136 41.2
RcHm_v2.0_Chr3g0483481 Rosa chinensis HOM05D020102 ORTHO05D009536 3.8e-15 87.0 205 34.6
TWI53G0905 Tripterygium wilfordii HOM05D007911 ORTHO05D009536 5.0e-15 86.7 397 29.0
arahy.Tifrunner.gnm1.ann1.BL1IZ1 Arachis hypogaea HOM05D007911 ORTHO05D009536 1.4e-14 85.1 141 38.3
ClCG04G003660 Citrullus lanatus HOM05D007911 ORTHO05D009536 4.2e-14 83.6 377 26.3
Cc06_g17980 Coffea canephora HOM05D007911 ORTHO05D009536 4.2e-14 83.6 96 42.7
Lalb_Chr01g0017411 Lupinus albus HOM05D007911 ORTHO05D009536 4.2e-14 83.6 175 32.6
Ca_08429_v3 Cicer arietinum L. HOM05D007911 ORTHO05D009536 7.2e-14 82.8 459 26.8
Solyc04g016290.3 Solanum lycopersicum HOM05D017238 ORTHO05D009536 7.2e-14 82.8 285 27.7
MELO3C026340.2 Cucumis melo HOM05D007911 ORTHO05D009536 1.2e-13 82.0 401 26.4
Lalb_Chr25g0287291 Lupinus albus HOM05D007911 ORTHO05D009536 1.2e-13 82.0 183 32.2
Sopen04g008390 Solanum pennellii HOM05D017238 ORTHO05D009536 1.2e-13 82.0 316 27.2
Glyma.03G133900 Glycine max HOM05D007911 ORTHO05D009536 2.1e-13 81.3 103 45.6
PSO339G2888 Papaver somniferum HOM05D007911 ORTHO05D009536 4.7e-13 80.1 118 40.7
SGA_v2.0_scaffold105G30375 Striga asiatica HOM05D007911 ORTHO05D009536 4.7e-13 80.1 312 28.8
arahy.Tifrunner.gnm1.ann1.XA9LH2 Arachis hypogaea HOM05D007911 ORTHO05D009536 7.9e-13 79.3 114 42.1
Psat3g074440 Pisum sativum HOM05D007911 ORTHO05D009536 1.0e-12 79.0 174 33.9
Glyma.19G136200 Glycine max HOM05D007911 ORTHO05D009536 1.4e-12 78.6 101 45.5
Sed0016742 Sechium edule HOM05D007911 ORTHO05D009536 1.8e-12 78.2 318 28.9
HanXRQChr08g0234551 Helianthus annuus HOM05D007911 ORTHO05D009536 2.3e-12 77.8 136 38.2
Medtr7g091040 Medicago truncatula HOM05D007911 ORTHO05D009536 2.3e-12 77.8 117 39.3
Aqoxy1G00297 Aquilegia oxysepala HOM05D007911 ORTHO05D009536 3.0e-12 77.4 185 32.4
arahy.Tifrunner.gnm1.ann1.18RKPD Arachis hypogaea HOM05D007911 ORTHO05D009536 8.8e-12 75.9 212 32.1
VMungo0720G0307 Vigna mungo HOM05D007911 ORTHO05D009536 8.8e-12 75.9 103 42.7
Phvul.001G129400 Phaseolus vulgaris HOM05D007911 ORTHO05D009536 2.6e-11 74.3 177 35.0
Medtr2g012890 Medicago truncatula HOM05D007911 ORTHO05D009536 5.7e-11 73.2 127 35.4
Lsat_1_v5_gn_9_31060 Lactuca sativa HOM05D007911 ORTHO05D009536 7.4e-11 72.8 174 35.1
PSO384G4398 Papaver somniferum HOM05D007911 ORTHO05D009536 1.3e-10 72.0 118 39.0
VMungo1383G2470 Vigna mungo HOM05D007911 ORTHO05D009536 1.3e-10 72.0 324 29.3
Eucgr.A02312 Eucalyptus grandis HOM05D007911 ORTHO05D009536 2.2e-10 71.2 237 29.1
AUR62026093 Chenopodium quinoa HOM05D021336 ORTHO05D009536 3.7e-10 70.5 207 28.5
FvH4_6g24470 Fragaria vesca HOM05D020102 ORTHO05D009536 1.1e-09 68.9 97 40.2
Nn2g15134 Nelumbo nucifera HOM05D007911 ORTHO05D009536 2.4e-09 67.8 185 30.3
FAN05G5247 Fragaria x ananassa HOM05D020102 ORTHO05D009536 4.1e-09 67.0 95 41.1
FAN14G4000 Fragaria x ananassa HOM05D020102 ORTHO05D009536 4.1e-09 67.0 97 39.2
EL10Ac3g07134 Beta vulgaris HOM05D021336 ORTHO05D009536 5.3e-09 66.6 196 29.1
Lj1g0009156 Lotus japonicus HOM05D007911 ORTHO05D009536 5.3e-09 66.6 329 28.3
Nitab4.5_0000677g0220 Nicotiana tabacum HOM05D017238 ORTHO05D009536 5.3e-09 66.6 139 36.0
FAN09G4584 Fragaria x ananassa HOM05D020102 ORTHO05D009536 1.6e-08 65.1 168 31.5
ECA247G2582 Erigeron canadensis HOM05D007911 ORTHO05D009536 5.9e-08 63.2 169 32.0
AUR62024506 Chenopodium quinoa HOM05D021336 ORTHO05D009536 7.7e-08 62.8 200 27.5
Sc13g0001600 Simmondsia chinensis HOM05D007911 ORTHO05D009536 2.2e-07 61.2 304 26.6
Hund19135 Selenicereus undatus HOM05D021336 ORTHO05D009536 6.5e-07 59.7 263 26.2


User provided reference genes

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