Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 0.0e+00 2858.2 1477 100.0
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 0.0e+00 2090.1 1378 81.9
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 0.0e+00 1384.8 1425 58.2
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 0.0e+00 1379.0 1346 61.2
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 0.0e+00 1322.0 1379 57.4
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 0.0e+00 1246.5 1353 55.9
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 4.2e-308 1062.0 1310 50.8
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 2.9e-293 1012.7 1348 49.9
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 5.0e-293 1011.9 1300 50.2
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 9.4e-292 1007.7 1300 50.0
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 6.5e-285 984.9 1383 48.4
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 2.6e-281 973.0 1361 47.0
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 2.7e-278 963.0 1368 46.8
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 2.6e-273 946.4 1308 48.2
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 7.0e-271 938.3 1316 47.1
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 2.9e-269 932.9 1367 47.7
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 6.5e-269 931.8 1345 46.5
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 4.2e-268 929.1 1349 46.4
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 5.5e-268 928.7 1345 46.3
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 7.7e-262 908.3 1258 46.5
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 1.3e-261 907.5 1308 46.9
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 2.8e-259 899.8 1326 45.9
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 3.0e-258 896.3 1292 46.3
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 2.9e-256 889.8 1281 47.2
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 1.2e-254 884.4 1278 46.4
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 3.9e-253 879.4 1291 45.5
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 1.9e-252 877.1 1298 46.5
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 4.3e-252 875.9 1361 44.4
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 4.7e-251 872.5 1283 46.1
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 1.0e-250 871.3 1270 46.1
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 1.0e-250 871.3 1325 45.8
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 9.8e-249 864.8 1393 44.1
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 3.7e-248 862.8 1283 45.8
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 6.4e-248 862.1 1316 44.6
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 5.4e-247 859.0 1436 43.6
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 7.0e-247 858.6 1293 44.8
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 4.3e-244 849.4 1276 45.2
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 9.5e-244 848.2 1285 45.2
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 3.1e-242 843.2 1289 45.5
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 7.8e-238 828.6 1312 45.6
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 1.7e-237 827.4 1310 44.2
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 3.0e-237 826.6 1299 44.3
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 3.9e-237 826.2 1285 44.7
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 1.7e-232 810.8 1267 45.4
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 2.2e-232 810.4 1454 42.9
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 4.9e-232 809.3 1235 45.5
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 5.4e-231 805.8 1291 43.5
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 1.2e-230 804.7 1298 44.3
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 3.5e-230 803.1 1358 43.1
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 1.1e-228 798.1 1296 43.4
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 2.5e-228 797.0 1306 44.3
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 5.6e-228 795.8 1297 44.1
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 7.3e-228 795.4 1321 42.3
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 4.7e-227 792.7 1300 43.2
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 6.4e-224 782.3 1287 42.8
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 8.4e-224 781.9 1294 43.4
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 7.1e-223 778.9 1209 43.3
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 3.0e-221 773.5 1357 42.2
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 3.6e-219 766.5 1430 40.4
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 2.9e-216 756.9 1286 42.0
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 1.4e-215 754.6 1250 43.3
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 1.2e-214 751.5 1363 41.4
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 5.1e-213 746.1 1235 42.2
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 6.2e-211 739.2 1304 42.7
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 8.1e-211 738.8 1374 41.3
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 6.9e-210 735.7 1210 42.1
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 1.5e-204 718.0 1305 41.1
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 4.3e-204 716.5 1247 41.6
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 1.8e-202 711.1 668 63.6
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 5.5e-199 699.5 1003 45.2
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 7.6e-193 679.1 1157 42.5
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 2.2e-192 677.6 1302 40.1
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 1.8e-189 667.9 1299 41.0
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 1.3e-187 661.8 1305 39.5
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 2.5e-183 647.5 1328 39.2
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 4.2e-183 646.7 1316 38.5
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 5.5e-183 646.4 1289 38.6
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.2e-177 628.6 1234 39.4
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 4.5e-177 626.7 1338 38.1
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 1.8e-170 604.7 1291 37.4
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 1.0e-168 599.0 1483 36.0
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 1.1e-167 595.5 1365 37.2
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 3.7e-163 580.5 1191 38.0
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 8.2e-163 579.3 1401 36.5
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 4.1e-162 577.0 1306 37.1
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 6.5e-160 569.7 1285 37.4
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 4.2e-159 567.0 1278 36.3
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 4.4e-156 557.0 1275 36.4
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 2.2e-155 554.7 1290 36.6
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 7.7e-153 546.2 1231 37.3
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 1.0e-152 545.8 1286 36.5
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 1.3e-152 545.4 1024 39.4
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 1.0e-149 535.8 1370 35.3
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 6.3e-147 526.6 1177 36.2
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 8.3e-147 526.2 900 43.1
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 5.4e-146 523.5 1269 34.7
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 5.4e-146 523.5 1269 34.7
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 2.3e-144 518.1 631 51.2
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 1.9e-143 515.0 1277 34.8
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.9e-143 515.0 606 51.5
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 3.3e-143 514.2 1277 34.8
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 8.9e-133 479.6 1254 34.4
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 1.7e-123 448.7 624 46.8
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 1.1e-119 436.0 955 36.3
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 3.5e-113 414.5 836 38.3
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 2.5e-111 408.3 1264 33.6
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 2.4e-101 375.2 461 47.9
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 1.2e-100 372.9 548 44.5
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 7.4e-95 353.6 518 46.3
Lj1P1230T41 Lonicera japonica HOM05D002890 ORTHO05D005855 1.6e-89 335.9 403 51.6
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 1.5e-87 329.3 503 45.3
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 2.9e-83 315.1 649 38.5
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 4.9e-83 314.3 687 36.2
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 1.6e-81 309.3 502 42.2
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 2.3e-72 278.9 628 36.9
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 3.7e-70 271.6 318 50.0
QL05p073153 Quercus lobata HOM05D002890 ORTHO05D005855 1.6e-57 229.6 571 33.1
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 2.7e-57 228.8 293 46.4
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 4.7e-57 228.0 514 36.2
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 3.3e-55 221.9 525 35.2
Medtr2g023290 Medicago truncatula HOM05D002975 ORTHO05D005855 1.4e-53 216.5 523 36.3
Oeu002905.1 Olea europaea HOM05D002890 ORTHO05D005855 2.2e-51 209.1 525 35.2
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 1.1e-45 190.3 861 26.0
CiPaw.10G071000 Carya illinoinensis HOM05D002890 ORTHO05D005855 3.1e-45 188.7 315 46.3
Duzib160G0022 Durio zibethinus HOM05D002890 ORTHO05D005855 1.0e-43 183.7 277 48.4
SEGI_38151 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 1.3e-43 183.3 739 30.7
Potri.004G015034 Populus trichocarpa HOM05D002890 ORTHO05D005855 6.5e-43 181.0 251 46.6
QL05p073148 Quercus lobata HOM05D002890 ORTHO05D005855 1.1e-42 180.3 624 31.4
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 5.5e-42 177.9 178 52.2
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 2.7e-41 175.6 371 37.2
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 4.7e-41 174.9 485 33.2
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 6.6e-35 154.5 235 41.7
BcaC04g22582 Brassica carinata HOM05D002890 ORTHO05D005855 2.9e-27 129.0 525 29.1
BcaB07g31476 Brassica carinata HOM05D002890 ORTHO05D005855 7.3e-26 124.4 407 31.9
Potri.004G015001 Populus trichocarpa HOM05D002890 ORTHO05D005855 2.2e-22 112.8 248 37.5
Nitab4.5_0000267g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.0e-19 104.0 256 34.8
HPP92_025077 Vanilla planifolia HOM05D002890 ORTHO05D005855 8.6e-19 100.9 549 28.8
Nitab4.5_0002954g0060 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.5e-18 99.4 120 55.0
Nitab4.5_0002954g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.4e-16 93.6 124 45.2
SEGI_20102 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 2.2e-14 86.3 63 63.5
MCO05G671 Micromonas commoda HOM05D002890 ORTHO05D005855 1.2e-12 80.5 625 23.7
Haze_20535 Corylus avellana HOM05D002890 ORTHO05D038830 5.1e-11 75.1 130 41.5
SEGI_38924 Sequoiadendron giganteum HOM05D009358 ORTHO05D011087 2.3e-08 66.2 215 31.2


User provided reference genes

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