Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro21901 Vaccinium macrocarpon HOM05D000902 ORTHO05D025187 4.1e-78 294.7 151 100.0
Rhsim10G0214800 Rhododendron simsii HOM05D000902 ORTHO05D025187 1.8e-60 236.1 151 82.1
Dinv33583 Davidia involucrata HOM05D000902 ORTHO05D000832 4.2e-30 135.2 152 52.6
Actinidia26089 Actinidia chinensis HOM05D000902 ORTHO05D000832 2.6e-24 115.9 98 65.3
CSS0025358 Camellia sinensis var. sinensis HOM05D000902 ORTHO05D000832 2.2e-23 112.8 144 51.4
TAR628G1548 Trochodendron aralioides HOM05D000902 ORTHO05D000832 1.2e-21 107.1 81 66.7
DCAR_017327 Daucus carota HOM05D000902 ORTHO05D000832 2.1e-21 106.3 144 43.8
Nn1g05981 Nelumbo nucifera HOM05D000902 ORTHO05D000832 2.3e-20 102.8 99 53.5
Haze_03826 Corylus avellana HOM05D000902 ORTHO05D025187 1.1e-19 100.5 73 67.1
Cfa006923 Carpinus fangiana HOM05D000902 ORTHO05D000832 1.5e-19 100.1 115 47.8
Atru.chr3.744 Acer truncatum HOM05D000902 ORTHO05D000832 2.6e-19 99.4 144 43.8
GSVIVG01018849001 Vitis vinifera HOM05D000902 ORTHO05D000832 7.4e-19 97.8 88 56.8
Lj4A212T28 Lonicera japonica HOM05D000902 ORTHO05D000832 1.3e-18 97.1 141 45.4
Cpa.g.sc6.194 Carica papaya HOM05D000902 ORTHO05D000832 2.8e-18 95.9 153 41.2
CiPaw.08G136700 Carya illinoinensis HOM05D000902 ORTHO05D000832 1.4e-17 93.6 135 44.4
MD02G1137200 Malus domestica HOM05D000902 ORTHO05D000832 1.8e-17 93.2 144 40.3
Potri.005G118400 Populus trichocarpa HOM05D000902 ORTHO05D000832 2.4e-17 92.8 134 42.5
AUR62007634 Chenopodium quinoa HOM05D000902 ORTHO05D000832 9.1e-17 90.9 103 50.5
AUR62004120 Chenopodium quinoa HOM05D000902 ORTHO05D000832 1.2e-16 90.5 103 50.5
Cc07_g10230 Coffea canephora HOM05D000902 ORTHO05D000832 1.2e-16 90.5 84 57.1
PSO170G4458 Papaver somniferum HOM05D000902 ORTHO05D000832 3.5e-16 89.0 145 37.2
CANSAT01G2052 Cannabis sativa HOM05D000902 ORTHO05D000832 4.5e-16 88.6 138 41.3
PSO210G6635 Papaver somniferum HOM05D000902 ORTHO05D000832 4.5e-16 88.6 145 37.2
QL06p034627 Quercus lobata HOM05D000902 ORTHO05D000832 4.5e-16 88.6 77 57.1
Sc03g0003290 Simmondsia chinensis HOM05D000902 ORTHO05D000832 7.7e-16 87.8 144 38.2
Ciclev10025076m.g Citrus clementina HOM05D000902 ORTHO05D000832 1.3e-15 87.0 145 40.7
Duzib147G0635 Durio zibethinus HOM05D000902 ORTHO05D000832 1.3e-15 87.0 117 47.0
EL10As8g23872 Beta vulgaris HOM05D000902 ORTHO05D000832 1.7e-15 86.7 140 40.0
Peaxi162Scf00084g01217 Petunia axillaris HOM05D000902 ORTHO05D000832 2.2e-15 86.3 145 37.2
Hund14016 Selenicereus undatus HOM05D000902 ORTHO05D000832 2.9e-15 85.9 91 50.5
ECA232G4845 Erigeron canadensis HOM05D000902 ORTHO05D000832 3.8e-15 85.5 104 48.1
Solyc02g084700.3 Solanum lycopersicum HOM05D000902 ORTHO05D000832 1.5e-14 83.6 145 40.0
Sopen02g029370 Solanum pennellii HOM05D000902 ORTHO05D000832 1.5e-14 83.6 145 39.3
Nitab4.5_0006760g0010 Nicotiana tabacum HOM05D000902 ORTHO05D000832 1.9e-14 83.2 146 39.0
Sabra05G0097400 Salix brachista HOM05D000902 ORTHO05D000832 2.5e-14 82.8 96 49.0
Hund16464 Selenicereus undatus HOM05D000902 ORTHO05D000832 2.5e-14 82.8 145 37.9
COL.COLO4_21986 Corchorus olitorius HOM05D000902 ORTHO05D025187 7.2e-14 81.3 71 57.7
TWI73G1052 Tripterygium wilfordii HOM05D000902 ORTHO05D000832 7.2e-14 81.3 87 49.4
Gohir.A11G179000 Gossypium hirsutum HOM05D000902 ORTHO05D000832 9.4e-14 80.9 79 55.7
Prupe.7G163400 Prunus persica HOM05D000902 ORTHO05D000832 1.2e-13 80.5 75 57.3
MSTRG.2499 Avicennia marina HOM05D000902 ORTHO05D000832 4.7e-13 78.6 76 52.6
CAN.G358.19 Capsicum annuum HOM05D000902 ORTHO05D000832 8.0e-13 77.8 114 43.0
Gorai.007G198400 Gossypium raimondii HOM05D000902 ORTHO05D000832 1.0e-12 77.4 79 53.2
ATR0661G195 Amborella trichopoda HOM05D000902 ORTHO05D000832 2.3e-12 76.3 95 47.4
PGR119G2534 Punica granatum HOM05D000902 ORTHO05D000832 2.3e-12 76.3 68 51.5
Thecc.01G025500 Theobroma cacao HOM05D000902 ORTHO05D000832 8.8e-12 74.3 67 56.7
HanXRQChr11g0325591 Helianthus annuus HOM05D000902 ORTHO05D000832 1.2e-11 73.9 62 56.5
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 2.6e-11 72.8 76 55.3
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 3.3e-11 72.4 78 53.8
FvH4_1g12391 Fragaria vesca HOM05D000902 ORTHO05D000832 5.7e-11 71.6 76 53.9
Lsat_1_v5_gn_4_151760 Lactuca sativa HOM05D000902 ORTHO05D000832 5.7e-11 71.6 62 58.1
Eucgr.I02381 Eucalyptus grandis HOM05D000902 ORTHO05D000832 7.5e-11 71.2 73 45.2
Manes.02G099900 Manihot esculenta HOM05D000902 ORTHO05D000832 7.5e-11 71.2 81 50.6
RcHm_v2.0_Chr2g0100251 Rosa chinensis HOM05D000902 ORTHO05D000832 1.7e-10 70.1 61 60.7
Phvul.003G258200 Phaseolus vulgaris HOM05D000902 ORTHO05D000832 2.2e-10 69.7 143 33.6
CDE04G1050 Ceratophyllum demersum HOM05D000902 ORTHO05D000832 3.7e-10 68.9 60 60.0
Migut.H02495 Erythranthe guttata HOM05D000902 ORTHO05D000832 6.3e-10 68.2 67 49.3
Lalb_Chr09g0333391 Lupinus albus HOM05D000902 ORTHO05D000832 6.3e-10 68.2 63 52.4
AL7G14740 Arabidopsis lyrata HOM05D000902 ORTHO05D000832 8.2e-10 67.8 63 49.2
CARHR244680 Cardamine hirsuta HOM05D000902 ORTHO05D000832 8.2e-10 67.8 70 47.1
AL7G14760 Arabidopsis lyrata HOM05D000902 ORTHO05D000832 1.8e-09 66.6 86 39.5
Lj4g0013705 Lotus japonicus HOM05D000902 ORTHO05D000832 2.4e-09 66.2 56 58.9
THA.LOC104804249 Tarenaya hassleriana HOM05D000902 ORTHO05D000832 2.4e-09 66.2 85 40.0
SHI08601 Sapria himalayana HOM05D000902 ORTHO05D000832 3.1e-09 65.9 86 46.5
CARHR244670 Cardamine hirsuta HOM05D000902 ORTHO05D000832 7.0e-09 64.7 62 51.6
ClCG07G008800 Citrullus lanatus HOM05D000902 ORTHO05D000832 7.0e-09 64.7 57 52.6
AT4G36270 Arabidopsis thaliana HOM05D000902 ORTHO05D000832 9.1e-09 64.3 80 43.8
Medtr8g076590 Medicago truncatula HOM05D000902 ORTHO05D000832 9.1e-09 64.3 59 52.5
Sp7g34010 Schrenkiella parvula HOM05D000902 ORTHO05D000832 9.1e-09 64.3 95 37.9
Glyma.16G131900 Glycine max HOM05D000902 ORTHO05D000832 1.2e-08 63.9 83 42.2
SGA_v2.0_scaffold280G46853 Striga asiatica HOM05D000902 ORTHO05D000832 1.2e-08 63.9 115 37.4
Carub.0007s0396 Capsella rubella HOM05D000902 ORTHO05D000832 1.6e-08 63.5 63 42.9
HanXRQChr09g0261321 Helianthus annuus HOM05D000902 ORTHO05D000832 1.6e-08 63.5 113 38.9
AL7G14750 Arabidopsis lyrata HOM05D000902 ORTHO05D000832 2.7e-08 62.8 63 42.9
TPR.G33376 Trifolium pratense HOM05D000902 ORTHO05D000832 2.7e-08 62.8 66 48.5
Sed0011838 Sechium edule HOM05D000902 ORTHO05D000832 3.5e-08 62.4 58 51.7
A01p02470 Brassica napus HOM05D000902 ORTHO05D000832 5.9e-08 61.6 95 36.8
BolC1t00257H Brassica oleracea HOM05D000902 ORTHO05D000832 5.9e-08 61.6 95 36.8
BraA01t00234Z Brassica rapa HOM05D000902 ORTHO05D000832 5.9e-08 61.6 95 36.8
SalBow8G2395 Salvia bowleyana HOM05D000902 ORTHO05D000832 5.9e-08 61.6 64 45.3
AT4G36290 Arabidopsis thaliana HOM05D000902 ORTHO05D000832 7.7e-08 61.2 53 52.8
BcaNung00742 Brassica carinata HOM05D000902 ORTHO05D000832 7.7e-08 61.2 79 36.7
Thhalv10024673m.g Eutrema salsugineum HOM05D000902 ORTHO05D000832 7.7e-08 61.2 100 36.0
HPP92_014940 Vanilla planifolia HOM05D000902 ORTHO05D000832 1.7e-07 60.1 60 50.0
Zm00001eb416360 Zea mays HOM05D000902 ORTHO05D000832 2.2e-07 59.7 73 45.2
CsaV3_4G005370 Cucumis sativus L. HOM05D000902 ORTHO05D000832 5.0e-07 58.5 77 42.9
arahy.Tifrunner.gnm1.ann1.CKDA6G Arachis hypogaea HOM05D000902 ORTHO05D000832 6.5e-07 58.2 66 48.5
arahy.Tifrunner.gnm1.ann1.NPCD8X Arachis hypogaea HOM05D000902 ORTHO05D000832 6.5e-07 58.2 66 48.5
HPP92_014988 Vanilla planifolia HOM05D000902 ORTHO05D000832 6.5e-07 58.2 60 48.3
Aa31LG6G13160 Aethionema arabicum HOM05D000902 ORTHO05D000832 1.1e-06 57.4 61 42.6
AT4G36280 Arabidopsis thaliana HOM05D000902 ORTHO05D000832 1.5e-06 57.0 57 45.6
PSO832G1305 Papaver somniferum HOM05D000902 ORTHO05D000832 2.5e-06 56.2 65 44.6
PSO210G7700 Papaver somniferum HOM05D000902 ORTHO05D000832 5.5e-06 55.1 65 44.6
TPR.G37389 Trifolium pratense HOM05D000902 ORTHO05D025187 9.4e-06 54.3 60 50.0


User provided reference genes

Program Settings