Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 1.2e-283 979.2 478 100.0
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 7.6e-219 763.8 478 79.7
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 7.2e-201 704.1 474 74.7
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 5.0e-194 681.4 475 72.6
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 2.7e-192 675.6 474 72.8
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 1.7e-181 639.8 459 70.6
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 2.4e-180 636.0 457 69.4
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 4.1e-180 635.2 469 67.8
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 4.1e-180 635.2 392 79.1
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 2.5e-177 625.9 420 74.0
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 1.6e-176 623.2 477 66.7
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 2.1e-176 622.9 477 66.7
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 5.2e-175 618.2 477 66.0
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 3.4e-174 615.5 468 66.0
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 7.5e-174 614.4 468 65.8
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 1.3e-173 613.6 454 68.3
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.3e-173 613.6 468 65.8
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 4.9e-173 611.7 453 66.9
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 8.3e-173 610.9 462 66.2
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 1.1e-172 610.5 468 65.6
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 1.1e-172 610.5 455 67.5
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 1.4e-172 610.1 461 67.2
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 4.1e-172 608.6 452 67.9
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 4.1e-172 608.6 465 65.8
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 4.1e-172 608.6 426 73.0
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 1.6e-171 606.7 477 64.6
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 2.7e-171 605.9 450 67.6
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 1.0e-170 604.0 466 66.3
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 2.3e-170 602.8 460 65.9
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 3.8e-170 602.1 469 65.5
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 5.0e-170 601.7 399 74.9
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 5.0e-170 601.7 481 64.4
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 5.0e-170 601.7 462 65.4
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 8.6e-170 600.9 471 65.0
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 2.5e-169 599.4 462 65.4
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 4.3e-169 598.6 435 67.8
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 7.2e-169 597.8 458 64.4
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 7.2e-169 597.8 450 66.9
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 1.2e-168 597.0 470 65.3
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 1.2e-168 597.0 460 67.2
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 1.2e-168 597.0 471 65.6
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 2.1e-168 596.3 467 65.3
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 2.8e-168 595.9 479 64.3
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 3.6e-168 595.5 458 65.3
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 3.6e-168 595.5 458 65.5
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 4.7e-168 595.1 448 67.0
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 6.1e-168 594.7 390 73.6
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 8.0e-168 594.3 467 64.7
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 8.0e-168 594.3 471 64.8
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 1.0e-167 594.0 479 63.5
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 4.0e-167 592.0 462 64.7
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 1.2e-166 590.5 458 64.8
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 2.0e-166 589.7 485 63.5
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 9.8e-166 587.4 464 65.1
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 1.3e-165 587.0 433 66.1
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 2.2e-165 586.3 386 72.5
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 2.9e-165 585.9 460 65.4
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 4.9e-165 585.1 464 64.0
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 8.3e-165 584.3 424 68.4
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 8.3e-165 584.3 386 73.1
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 8.3e-165 584.3 392 71.7
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 1.4e-164 583.6 433 65.6
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 3.2e-164 582.4 455 63.3
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 4.1e-164 582.0 469 62.5
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 1.9e-161 573.2 461 62.9
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 2.5e-161 572.8 496 60.7
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 4.3e-161 572.0 473 62.4
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 9.5e-161 570.9 440 65.5
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 2.8e-160 569.3 440 64.8
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 4.7e-160 568.5 463 62.0
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 8.0e-160 567.8 435 64.4
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 8.0e-160 567.8 435 64.4
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 1.0e-159 567.4 417 66.2
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 1.0e-159 567.4 463 61.8
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 1.0e-159 567.4 467 61.0
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 2.3e-159 566.2 476 60.3
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 2.6e-158 562.8 469 62.0
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 2.2e-157 559.7 428 63.8
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 2.9e-157 559.3 393 70.5
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 4.9e-157 558.5 417 65.7
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 7.0e-156 554.7 468 60.3
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 6.0e-155 551.6 468 60.0
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 6.0e-155 551.6 470 61.5
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 7.8e-155 551.2 440 63.9
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 7.8e-155 551.2 411 64.5
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 1.0e-154 550.8 474 59.3
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 1.3e-154 550.4 440 64.1
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 2.5e-153 546.2 517 57.8
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 2.1e-152 543.1 385 67.8
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 1.4e-151 540.4 386 67.1
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 6.8e-151 538.1 471 59.2
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 2.2e-149 533.1 473 57.7
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 1.1e-148 530.8 403 65.5
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 2.4e-148 529.6 347 72.0
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 2.1e-147 526.6 305 83.0
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 7.8e-147 524.6 436 61.5
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 7.8e-147 524.6 403 65.0
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 1.9e-145 520.0 426 61.3
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 8.1e-144 514.6 428 59.8
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 5.2e-143 511.9 401 63.1
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 7.3e-137 491.5 328 71.3
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 2.1e-136 490.0 416 61.5
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 7.6e-134 481.5 409 60.1
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 4.2e-132 475.7 397 58.9
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 1.6e-131 473.8 398 60.3
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 2.1e-131 473.4 386 61.1
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 3.9e-130 469.2 358 64.5
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 1.4e-127 460.7 438 54.6
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 4.4e-126 455.7 425 55.5
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 6.4e-125 451.8 343 63.8
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 4.6e-123 445.7 366 59.8
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.1e-121 441.0 366 59.0
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 2.5e-121 439.9 325 68.3
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 2.5e-121 439.9 366 59.0
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 2.8e-120 436.4 285 72.6
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 3.8e-101 372.9 380 50.8
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 1.9e-100 370.5 320 59.7
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 3.2e-100 369.8 303 58.4
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 2.9e-93 346.7 230 70.4
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 1.4e-92 344.4 285 59.3
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 2.0e-86 323.9 391 44.8
SGA_v2.0_scaffold195G40773 Striga asiatica HOM05D005125 ORTHO05D006777 2.0e-78 297.4 200 71.0
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 7.0e-71 272.3 247 58.7
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 5.9e-70 269.2 323 45.2
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 3.0e-66 256.9 233 53.6
MD00G1076900 Malus domestica HOM05D005125 ORTHO05D006777 8.8e-66 255.4 227 59.9
BcaNung05254 Brassica carinata HOM05D005125 ORTHO05D006777 2.7e-62 243.8 172 66.3
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 5.0e-61 239.6 193 58.5
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 4.7e-59 233.0 157 72.6
ECA233G3085 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.1e-47 195.3 121 71.9
SEGI_37631 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 2.5e-44 184.1 132 61.4
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 5.2e-42 176.4 177 54.2
MCO16G405 Micromonas commoda HOM05D005125 ORTHO05D006777 5.0e-37 159.8 140 51.4
ECA238G2450 Erigeron canadensis HOM05D000240 ORTHO05D002721 2.3e-34 151.0 184 44.6
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 8.9e-34 149.1 162 54.3
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 8.3e-32 142.5 300 34.7
Oeu035185.1 Olea europaea HOM05D005125 ORTHO05D006777 4.0e-26 123.6 95 68.4
PRCOL_00005708 Prasinoderma coloniale HOM05D005125 ORTHO05D034490 1.5e-25 121.7 389 27.5
Sc15g0004440 Simmondsia chinensis HOM05D005125 ORTHO05D006777 3.8e-24 117.1 117 50.4
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 2.1e-22 111.3 267 31.1
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 1.6e-19 101.7 63 68.3
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 3.4e-17 94.0 82 54.9
TPR.G33884 Trifolium pratense HOM05D005125 ORTHO05D006777 1.4e-15 88.6 52 73.1
ECA233G5321 Erigeron canadensis HOM05D000003 ORTHO05D000004 2.8e-11 74.3 54 63.0
C04p25390 Brassica napus HOM05D005125 ORTHO05D041222 7.6e-09 66.2 76 44.7
BolC4t24047H Brassica oleracea HOM05D005125 ORTHO05D041222 7.6e-09 66.2 76 44.7
CSS0020606 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D109310 1.7e-08 65.1 49 65.3


User provided reference genes

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