Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro21809 Vaccinium macrocarpon HOM05D005571 ORTHO05D006919 6.7e-114 414.1 215 100.0
Rhsim06G0007100 Rhododendron simsii HOM05D005571 ORTHO05D006919 1.3e-88 330.1 217 83.4
Actinidia17042 Actinidia chinensis HOM05D005571 ORTHO05D006919 5.7e-73 278.1 213 72.8
Actinidia15492 Actinidia chinensis HOM05D005571 ORTHO05D006919 9.1e-71 270.8 213 71.8
CSS0030992 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 1.8e-63 246.5 216 70.8
Hma1.2p1_0157F.1_g069390 Hydrangea macrophylla HOM05D005571 ORTHO05D006919 3.1e-63 245.7 218 67.4
Potri.005G250800 Populus trichocarpa HOM05D005571 ORTHO05D006919 5.4e-63 245.0 215 64.2
Sabra05G0194000 Salix brachista HOM05D005571 ORTHO05D006919 5.4e-63 245.0 214 64.5
CSS0029462 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 2.5e-60 236.1 215 65.1
Manes.18G005301 Manihot esculenta HOM05D005571 ORTHO05D006919 3.0e-58 229.2 215 61.4
Potri.002G010400 Populus trichocarpa HOM05D005571 ORTHO05D006919 6.8e-58 228.0 215 60.5
Nitab4.5_0000588g0080 Nicotiana tabacum HOM05D005571 ORTHO05D006919 4.4e-57 225.3 217 61.3
Sabra02G0007800 Salix brachista HOM05D005571 ORTHO05D006919 4.4e-57 225.3 215 61.4
Thecc.08G059400 Theobroma cacao HOM05D005571 ORTHO05D006919 1.3e-56 223.8 219 62.6
Duzib116G0932 Durio zibethinus HOM05D005571 ORTHO05D006919 4.9e-56 221.9 217 60.4
COL.COLO4_05218 Corchorus olitorius HOM05D005571 ORTHO05D006919 8.3e-56 221.1 215 59.5
GSVIVG01008671001 Vitis vinifera HOM05D005571 ORTHO05D006919 2.4e-55 219.5 215 61.9
Dinv05532 Davidia involucrata HOM05D005571 ORTHO05D006919 2.0e-54 216.5 215 64.7
Lj4A11T70 Lonicera japonica HOM05D005571 ORTHO05D006919 2.7e-54 216.1 217 59.4
Manes.05G133900 Manihot esculenta HOM05D005571 ORTHO05D006919 1.7e-53 213.4 217 61.3
Ciclev10002509m.g Citrus clementina HOM05D005571 ORTHO05D006919 8.6e-53 211.1 215 58.6
Duzib093G0863 Durio zibethinus HOM05D005571 ORTHO05D006919 1.9e-52 209.9 216 58.3
TWI12G0392 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 3.3e-52 209.1 216 56.9
CiPaw.08G073400 Carya illinoinensis HOM05D005571 ORTHO05D006919 4.3e-52 208.8 219 60.3
Gohir.A05G179400 Gossypium hirsutum HOM05D005571 ORTHO05D006919 7.3e-52 208.0 218 56.4
CAN.G311.116 Capsicum annuum HOM05D005571 ORTHO05D006919 1.2e-51 207.2 218 58.3
Gohir.D05G182600 Gossypium hirsutum HOM05D005571 ORTHO05D006919 1.6e-51 206.8 218 56.4
Gorai.009G187900 Gossypium raimondii HOM05D005571 ORTHO05D006919 1.6e-51 206.8 218 56.4
Peaxi162Scf00893g00005 Petunia axillaris HOM05D005571 ORTHO05D006919 2.1e-51 206.5 215 58.6
TWI56G1114 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 4.7e-51 205.3 216 56.0
ClCG08G009410 Citrullus lanatus HOM05D005571 ORTHO05D006919 8.0e-51 204.5 217 60.8
Haze_22782 Corylus avellana HOM05D005571 ORTHO05D006919 4.0e-50 202.2 214 59.8
Migut.C00385 Erythranthe guttata HOM05D005571 ORTHO05D006919 2.6e-49 199.5 224 57.6
Cfa014080 Carpinus fangiana HOM05D005571 ORTHO05D006919 9.8e-49 197.6 213 58.2
FvH4_2g37430 Fragaria vesca HOM05D005571 ORTHO05D006919 2.9e-48 196.1 218 54.1
TAR628G0603 Trochodendron aralioides HOM05D005571 ORTHO05D006919 4.9e-48 195.3 222 57.7
Sopen04g035980 Solanum pennellii HOM05D005571 ORTHO05D006919 8.3e-48 194.5 216 56.9
PGSC0003DMG400009903 Solanum tuberosum HOM05D005571 ORTHO05D006919 8.3e-48 194.5 216 56.9
FAN27G2782 Fragaria x ananassa HOM05D005571 ORTHO05D006919 1.9e-47 193.4 218 54.6
MELO3C026535.2 Cucumis melo HOM05D005571 ORTHO05D006919 3.2e-47 192.6 220 60.9
FAN15G1374 Fragaria x ananassa HOM05D005571 ORTHO05D006919 5.4e-47 191.8 214 55.6
CsaV3_6G031520 Cucumis sativus L. HOM05D005571 ORTHO05D006919 9.2e-47 191.0 218 58.3
FAN20G2818 Fragaria x ananassa HOM05D005571 ORTHO05D006919 9.2e-47 191.0 218 54.1
Sed0002015 Sechium edule HOM05D005571 ORTHO05D006919 1.2e-46 190.7 218 57.3
PGR083G0609 Punica granatum HOM05D005571 ORTHO05D006919 2.0e-46 189.9 219 55.3
Cc10_g00650 Coffea canephora HOM05D005571 ORTHO05D006919 4.6e-46 188.7 223 56.5
CiPaw.07G138600 Carya illinoinensis HOM05D005571 ORTHO05D006919 7.8e-46 188.0 217 55.3
QL02p014184 Quercus lobata HOM05D005571 ORTHO05D006919 7.8e-46 188.0 214 54.7
CSS0039739 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 3.0e-45 186.0 214 55.6
Oeu064631.1 Olea europaea HOM05D005571 ORTHO05D006919 3.0e-45 186.0 218 57.8
RcHm_v2.0_Chr6g0304291 Rosa chinensis HOM05D005571 ORTHO05D006919 3.0e-45 186.0 217 55.8
SalBow7G0698 Salvia bowleyana HOM05D005571 ORTHO05D006919 6.6e-45 184.9 223 55.2
MSTRG.24929 Avicennia marina HOM05D005571 ORTHO05D006919 5.6e-44 181.8 221 52.0
Dinv31944 Davidia involucrata HOM05D005571 ORTHO05D006919 5.6e-44 181.8 216 56.0
Gorai.005G113600 Gossypium raimondii HOM05D005571 ORTHO05D006919 5.6e-44 181.8 194 57.7
Lj1g0015612 Lotus japonicus HOM05D005571 ORTHO05D006919 5.6e-44 181.8 225 57.3
Gohir.D02G100200 Gossypium hirsutum HOM05D005571 ORTHO05D006919 3.6e-43 179.1 194 57.2
DCAR_009532 Daucus carota HOM05D005571 ORTHO05D006919 2.3e-42 176.4 217 52.1
Nn6g31737 Nelumbo nucifera HOM05D005571 ORTHO05D006919 1.5e-41 173.7 214 56.5
CSS0038566 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 2.6e-41 172.9 215 54.0
SalBow5G5667 Salvia bowleyana HOM05D005571 ORTHO05D006919 2.6e-41 172.9 203 56.2
Aqoxy6G01708 Aquilegia oxysepala HOM05D005571 ORTHO05D006919 9.8e-41 171.0 220 51.4
Oeu035840.1 Olea europaea HOM05D005571 ORTHO05D006919 1.7e-40 170.2 222 55.0
Medtr3g115300 Medicago truncatula HOM05D005571 ORTHO05D006919 1.2e-38 164.1 225 49.8
VMungo1309G0957 Vigna mungo HOM05D005571 ORTHO05D006919 1.2e-38 164.1 210 54.3
Oeu000692.1 Olea europaea HOM05D005571 ORTHO05D006919 3.5e-38 162.5 218 50.5
Cfa012650 Carpinus fangiana HOM05D005571 ORTHO05D006919 6.0e-38 161.8 195 54.4
Glyma.06G018100 Glycine max HOM05D005571 ORTHO05D006919 1.0e-37 161.0 214 51.4
MSTRG.977 Avicennia marina HOM05D005571 ORTHO05D006919 3.9e-37 159.1 223 50.2
SGA_v2.0_scaffold133G34635 Striga asiatica HOM05D005571 ORTHO05D006919 5.1e-37 158.7 223 50.2
Hund01764 Selenicereus undatus HOM05D005571 ORTHO05D006919 1.1e-36 157.5 215 52.1
THA.LOC104825425 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 2.5e-36 156.4 200 51.5
EL10Ac1g01953 Beta vulgaris HOM05D005571 ORTHO05D006919 9.5e-36 154.5 218 51.4
Sc02g0009100 Simmondsia chinensis HOM05D005571 ORTHO05D006919 1.2e-35 154.1 212 49.5
TPR.G38112 Trifolium pratense HOM05D005571 ORTHO05D006919 1.2e-35 154.1 220 50.5
arahy.Tifrunner.gnm1.ann1.G9B5FS Arachis hypogaea HOM05D005571 ORTHO05D006919 1.6e-35 153.7 226 50.4
Phvul.009G010900 Phaseolus vulgaris HOM05D005571 ORTHO05D006919 1.6e-35 153.7 210 52.9
arahy.Tifrunner.gnm1.ann1.VC4QUA Arachis hypogaea HOM05D005571 ORTHO05D006919 2.1e-35 153.3 219 50.7
Lsat_1_v5_gn_2_4041 Lactuca sativa HOM05D005571 ORTHO05D006919 4.7e-35 152.1 226 48.2
Glyma.04G017800 Glycine max HOM05D005571 ORTHO05D006919 8.1e-35 151.4 210 50.0
CANSAT25G0564 Cannabis sativa HOM05D005571 ORTHO05D006919 8.9e-34 147.9 220 49.5
Lalb_Chr23g0265781 Lupinus albus HOM05D005571 ORTHO05D006919 8.9e-34 147.9 216 50.0
Atru.chr13.137 Acer truncatum HOM05D005571 ORTHO05D006919 1.2e-33 147.5 149 58.4
THA.LOC104813174 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 9.9e-33 144.4 224 48.2
BcaB01g04868 Brassica carinata HOM05D005571 ORTHO05D006919 8.4e-32 141.4 214 46.3
Prupe.1G354300 Prunus persica HOM05D005571 ORTHO05D006919 8.4e-32 141.4 270 44.8
unitig_747.g21542 Utricularia gibba HOM05D005571 ORTHO05D006919 2.4e-31 139.8 224 47.3
Ah.11g041150 Amaranthus hybridus HOM05D005571 ORTHO05D006919 1.2e-30 137.5 215 45.6
HanXRQChr14g0428071 Helianthus annuus HOM05D005571 ORTHO05D006919 1.2e-30 137.5 220 45.5
MBI05_g43168_MAGBIO Magnolia biondii HOM05D005571 ORTHO05D006919 1.6e-30 137.1 206 46.1
Psat0s2670g0120 Pisum sativum HOM05D005571 ORTHO05D006919 2.7e-30 136.3 227 44.5
HanXRQChr06g0183961 Helianthus annuus HOM05D005571 ORTHO05D006919 6.0e-30 135.2 191 46.6
Aa31LG9G12460 Aethionema arabicum HOM05D005571 ORTHO05D006919 1.3e-29 134.0 224 42.9
A03p09420 Brassica napus HOM05D005571 ORTHO05D006919 1.3e-29 134.0 219 47.5
BraA03t10260Z Brassica rapa HOM05D005571 ORTHO05D006919 1.3e-29 134.0 219 47.5
Hund05103 Selenicereus undatus HOM05D001348 ORTHO05D002788 2.3e-29 133.3 221 44.3
BcaB01g05139 Brassica carinata HOM05D005571 ORTHO05D006919 1.5e-28 130.6 220 48.2
AUR62040795 Chenopodium quinoa HOM05D005571 ORTHO05D006919 1.5e-28 130.6 221 44.8
Thhalv10014687m.g Eutrema salsugineum HOM05D005571 ORTHO05D006919 1.5e-28 130.6 220 45.9
BolC3t13569H Brassica oleracea HOM05D005571 ORTHO05D006919 2.5e-28 129.8 221 47.5
C03p11000 Brassica napus HOM05D005571 ORTHO05D006919 3.3e-28 129.4 220 47.7
AL8G19260 Arabidopsis lyrata HOM05D005571 ORTHO05D006919 5.6e-28 128.6 224 43.3
Sp6g25100 Schrenkiella parvula HOM05D005571 ORTHO05D006919 9.6e-28 127.9 218 47.2
Carub.0008s0685 Capsella rubella HOM05D005571 ORTHO05D006919 3.6e-27 125.9 217 41.9
Sabra11G0114300 Salix brachista HOM05D005571 ORTHO05D006919 3.6e-27 125.9 127 59.8
PSO675G2006 Papaver somniferum HOM05D005571 ORTHO05D006919 8.1e-27 124.8 221 43.4
AT5G42330 Arabidopsis thaliana HOM05D005571 ORTHO05D006919 1.1e-26 124.4 220 43.6
CARHR284960 Cardamine hirsuta HOM05D005571 ORTHO05D006919 3.1e-26 122.9 227 44.1
unitig_0.g2084 Utricularia gibba HOM05D005571 ORTHO05D006919 4.0e-26 122.5 171 51.5
PSO541G4697 Papaver somniferum HOM05D005571 ORTHO05D006919 1.2e-25 120.9 221 42.5
Ca_15432_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 5.8e-25 118.6 182 47.8
Ca_15457_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 5.8e-25 118.6 182 47.8
ECA238G3324 Erigeron canadensis HOM05D005571 ORTHO05D007881 9.9e-25 117.9 175 48.6
BcaB08g36584 Brassica carinata HOM05D005571 ORTHO05D006919 1.3e-24 117.5 195 48.7
Solyc04g082380.4 Solanum lycopersicum HOM05D005571 ORTHO05D006919 2.0e-17 93.6 106 55.7
SHI42933 Sapria himalayana HOM05D005571 ORTHO05D006919 2.6e-17 93.2 184 35.9
Gohir.A02G084300 Gossypium hirsutum HOM05D005571 ORTHO05D006919 4.5e-17 92.4 146 43.8
Cpa.g.c36471 Carica papaya HOM05D005571 ORTHO05D006919 1.3e-16 90.9 86 59.3
Duzib128G0429 Durio zibethinus HOM05D005571 ORTHO05D006919 1.3e-16 90.9 104 50.0
AUR62036861 Chenopodium quinoa HOM05D005571 ORTHO05D006919 4.9e-16 89.0 218 36.2
Sc15g0004410 Simmondsia chinensis HOM05D005571 ORTHO05D006919 3.2e-15 86.3 175 40.0
BcaC04g18579 Brassica carinata HOM05D005571 ORTHO05D006919 3.5e-14 82.8 177 40.1
C09p56960 Brassica napus HOM05D005571 ORTHO05D006919 3.5e-14 82.8 177 40.1
BolC9t58559H Brassica oleracea HOM05D005571 ORTHO05D006919 3.5e-14 82.8 177 40.1
A10p20370 Brassica napus HOM05D005571 ORTHO05D006919 1.3e-13 80.9 214 37.9
Sabra11G0115000 Salix brachista HOM05D005571 ORTHO05D006919 8.7e-13 78.2 74 58.1
Sabra11G0115600 Salix brachista HOM05D005571 ORTHO05D006919 8.7e-13 78.2 74 58.1
Os07g0474300 Oryza sativa ssp. japonica HOM05D033341 ORTHO05D036979 3.6e-11 72.8 239 34.7
CDE05G1909 Ceratophyllum demersum HOM05D005571 ORTHO05D006919 4.8e-11 72.4 134 42.5
BraA10t44107Z Brassica rapa HOM05D005571 ORTHO05D006919 9.0e-10 68.2 195 34.4
CDE04G0695 Ceratophyllum demersum HOM05D005571 ORTHO05D006919 9.0e-10 68.2 153 37.9
A02p05480 Brassica napus HOM05D005571 ORTHO05D006919 4.5e-09 65.9 119 47.9
BraA02t05499Z Brassica rapa HOM05D005571 ORTHO05D006919 4.5e-09 65.9 119 47.9
HPP92_021048 Vanilla planifolia HOM05D005571 ORTHO05D006919 5.8e-09 65.5 222 34.2
BcaC03g13663 Brassica carinata HOM05D005571 ORTHO05D006919 9.9e-09 64.7 152 42.1
BNapus_Darmor_BZH_scaffold_38p02630 Brassica napus HOM05D005571 ORTHO05D006919 9.9e-09 64.7 152 42.1
Thecc.06G128900 Theobroma cacao HOM05D005571 ORTHO05D006919 8.4e-08 61.6 74 50.0
Thecc.04G308600 Theobroma cacao HOM05D005571 ORTHO05D006919 2.7e-06 56.6 74 48.6
ECA238G3056 Erigeron canadensis HOM05D002204 ORTHO05D002875 3.5e-06 56.2 105 41.9
Thecc.07G149400 Theobroma cacao HOM05D005571 ORTHO05D004433 7.9e-06 55.1 69 49.3


User provided reference genes

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