Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro21636 Vaccinium macrocarpon HOM05D006788 ORTHO05D008265 0.0e+00 2022.3 1076 100.0
Rhsim06G0034200 Rhododendron simsii HOM05D006788 ORTHO05D008265 0.0e+00 1380.9 1076 72.3
CSS0004157 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 3.9e-295 1018.5 1134 56.4
Dinv36075 Davidia involucrata HOM05D006788 ORTHO05D008265 2.0e-259 899.8 1130 50.2
Actinidia22550 Actinidia chinensis HOM05D006788 ORTHO05D008265 1.3e-247 860.5 960 56.8
Dinv39415 Davidia involucrata HOM05D006788 ORTHO05D008265 1.5e-230 803.9 1086 49.4
CSS0005112 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 2.4e-220 770.0 889 56.4
Hma1.2p1_0203F.1_g086400 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 2.8e-205 719.9 1088 44.5
QL02p008476 Quercus lobata HOM05D006788 ORTHO05D008265 3.0e-194 683.3 1141 44.1
Cfa018147 Carpinus fangiana HOM05D006788 ORTHO05D008265 3.0e-170 603.6 1105 42.9
CiPaw.15G077700 Carya illinoinensis HOM05D006788 ORTHO05D008265 3.0e-170 603.6 1137 40.3
Duzib116G0613 Durio zibethinus HOM05D006788 ORTHO05D008265 2.5e-161 573.9 1131 40.3
Haze_17976 Corylus avellana HOM05D006788 ORTHO05D008265 2.8e-160 570.5 1102 42.0
Duzib093G0366 Durio zibethinus HOM05D006788 ORTHO05D008265 2.6e-158 563.9 1137 39.0
Gohir.A06G010500 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.9e-156 557.8 1132 38.9
Gohir.D06G007900 Gossypium hirsutum HOM05D006788 ORTHO05D008265 2.4e-156 557.4 1137 39.0
Gorai.010G010600 Gossypium raimondii HOM05D006788 ORTHO05D008265 2.4e-156 557.4 1132 39.0
Nitab4.5_0009150g0020 Nicotiana tabacum HOM05D006788 ORTHO05D008265 1.6e-155 554.7 1137 37.6
TAR381G0400 Trochodendron aralioides HOM05D006788 ORTHO05D008265 6.0e-155 552.7 1098 39.5
Potri.014G185300 Populus trichocarpa HOM05D006788 ORTHO05D008265 2.3e-154 550.8 1143 39.8
Thecc.08G025800 Theobroma cacao HOM05D006788 ORTHO05D008265 3.9e-154 550.1 1134 39.0
COL.COLO4_26325 Corchorus olitorius HOM05D006788 ORTHO05D008265 2.8e-152 543.9 1133 39.0
TWI56G0676 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 1.3e-149 535.0 1134 37.7
Lj4A785T32 Lonicera japonica HOM05D006788 ORTHO05D008265 1.1e-148 531.9 1118 38.4
Potri.002G261700 Populus trichocarpa HOM05D006788 ORTHO05D008265 7.1e-148 529.3 1129 38.4
Actinidia15324 Actinidia chinensis HOM05D006788 ORTHO05D008265 9.3e-148 528.9 779 47.9
TWI36G0908 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 2.5e-145 520.8 1130 37.9
Peaxi162Scf00417g01019 Petunia axillaris HOM05D006788 ORTHO05D008265 5.6e-145 519.6 1143 36.5
Ciclev10018661m.g Citrus clementina HOM05D006788 ORTHO05D008265 1.3e-144 518.5 1120 37.8
Sabra14G0142000 Salix brachista HOM05D006788 ORTHO05D008265 3.7e-144 516.9 1130 38.4
Manes.05G160500 Manihot esculenta HOM05D006788 ORTHO05D008265 9.0e-143 512.3 1137 38.5
Prupe.1G380200 Prunus persica HOM05D006788 ORTHO05D008265 1.3e-141 508.4 1110 38.3
Solyc04g080270.4 Solanum lycopersicum HOM05D006788 ORTHO05D008265 1.9e-140 504.6 1124 35.6
PGSC0003DMG400005137 Solanum tuberosum HOM05D006788 ORTHO05D008265 2.5e-140 504.2 1127 36.0
Sopen04g033860 Solanum pennellii HOM05D006788 ORTHO05D008265 7.9e-139 499.2 1122 35.4
Nitab4.5_0000110g0630 Nicotiana tabacum HOM05D006788 ORTHO05D008265 1.8e-135 488.0 1140 35.8
GSVIVG01009701001 Vitis vinifera HOM05D006788 ORTHO05D008265 3.4e-134 483.8 1115 37.2
Cc10_g02940 Coffea canephora HOM05D006788 ORTHO05D008265 7.7e-134 482.6 1143 35.2
Manes.18G027700 Manihot esculenta HOM05D006788 ORTHO05D008265 9.4e-132 475.7 1066 37.5
MD08G1035200 Malus domestica HOM05D006788 ORTHO05D008265 2.1e-123 448.0 1103 35.5
RcHm_v2.0_Chr5g0052261 Rosa chinensis HOM05D006788 ORTHO05D008265 3.0e-122 444.1 1117 36.4
Eucgr.F01564 Eucalyptus grandis HOM05D006788 ORTHO05D008265 5.1e-122 443.4 1128 35.3
DCAR_008759 Daucus carota HOM05D006788 ORTHO05D008265 3.2e-116 424.1 1121 33.1
FAN20G0511 Fragaria x ananassa HOM05D006788 ORTHO05D008265 5.5e-116 423.3 1119 34.6
FvH4_2g39870 Fragaria vesca HOM05D006788 ORTHO05D008265 3.9e-114 417.2 1105 35.1
Nn5g29585 Nelumbo nucifera HOM05D006788 ORTHO05D008265 2.6e-113 414.5 1137 33.9
FAN27G2706 Fragaria x ananassa HOM05D006788 ORTHO05D008265 1.2e-110 405.6 1105 34.2
CANSAT25G0680 Cannabis sativa HOM05D006788 ORTHO05D008265 3.5e-110 404.1 1114 34.8
Aqoxy5G01647 Aquilegia oxysepala HOM05D006788 ORTHO05D008265 1.3e-109 402.1 1144 33.1
Glyma.05G248700 Glycine max HOM05D006788 ORTHO05D008265 3.2e-108 397.5 1124 34.1
Glyma.08G057300 Glycine max HOM05D006788 ORTHO05D008265 1.5e-105 388.7 1137 33.9
Gohir.A05G194600 Gossypium hirsutum HOM05D006788 ORTHO05D008265 9.7e-105 386.0 1099 34.8
Gorai.009G202800 Gossypium raimondii HOM05D006788 ORTHO05D008265 3.5e-102 377.5 1105 33.7
MSTRG.24293 Avicennia marina HOM05D006788 ORTHO05D008265 1.7e-101 375.2 1082 34.0
MD15G1031800 Malus domestica HOM05D006788 ORTHO05D008265 1.7e-101 375.2 1102 34.8
VMungo0251G0495 Vigna mungo HOM05D006788 ORTHO05D008265 7.5e-97 359.8 1112 33.8
MBI16_g34334_MAGBIO Magnolia biondii HOM05D006788 ORTHO05D008265 2.2e-96 358.2 1153 32.3
SGA_v2.0_scaffold326G48711 Striga asiatica HOM05D006788 ORTHO05D008265 4.8e-96 357.1 1091 32.4
arahy.Tifrunner.gnm1.ann1.50JV45 Arachis hypogaea HOM05D006788 ORTHO05D008265 3.1e-95 354.4 1113 31.4
arahy.Tifrunner.gnm1.ann1.HV2TRI Arachis hypogaea HOM05D006788 ORTHO05D008265 3.1e-95 354.4 1114 31.3
LjContig00484g0028229 Lotus japonicus HOM05D006788 ORTHO05D008265 4.1e-95 354.0 1143 32.2
PGR083G0386 Punica granatum HOM05D006788 ORTHO05D008265 1.0e-93 349.4 1088 33.0
Phvul.002G333000 Phaseolus vulgaris HOM05D006788 ORTHO05D008265 1.9e-92 345.1 1130 32.4
CsaV3_3G045060 Cucumis sativus L. HOM05D006788 ORTHO05D008265 3.3e-92 344.4 1161 30.7
Cpa.g.sc36.71 Carica papaya HOM05D006788 ORTHO05D008265 3.6e-91 340.9 837 36.7
Lsat_1_v5_gn_5_29160 Lactuca sativa HOM05D006788 ORTHO05D008265 1.4e-90 339.0 1092 30.3
AUR62007432 Chenopodium quinoa HOM05D006788 ORTHO05D008265 2.0e-89 335.1 1117 31.2
ClCG05G019050 Citrullus lanatus HOM05D006788 ORTHO05D008265 5.7e-89 333.6 1146 31.9
MELO3C003844.2 Cucumis melo HOM05D006788 ORTHO05D008265 9.8e-89 332.8 1141 29.8
THA.LOC104798640 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 9.8e-89 332.8 1122 30.7
AUR62027306 Chenopodium quinoa HOM05D006788 ORTHO05D008265 3.5e-86 324.3 1121 30.1
Migut.N00496 Erythranthe guttata HOM05D006788 ORTHO05D008265 5.9e-86 323.6 1088 30.3
Gorai.005G107800 Gossypium raimondii HOM05D006788 ORTHO05D008265 1.0e-82 312.8 1076 31.4
Gohir.D05G197766 Gossypium hirsutum HOM05D006788 ORTHO05D008265 3.1e-82 311.2 1047 31.7
Ah.08g219690 Amaranthus hybridus HOM05D006788 ORTHO05D008265 1.5e-81 308.9 1100 31.7
HanXRQChr05g0151911 Helianthus annuus HOM05D006788 ORTHO05D008265 4.9e-80 303.9 1086 28.8
Sc15g0006920 Simmondsia chinensis HOM05D000020 ORTHO05D008265 1.4e-79 302.4 947 31.8
ECA246G4903 Erigeron canadensis HOM05D006788 ORTHO05D008265 1.2e-78 299.3 1096 30.6
PSO700G0053 Papaver somniferum HOM05D006788 ORTHO05D008265 1.3e-77 295.8 1119 29.1
PSO081G0175 Papaver somniferum HOM05D006788 ORTHO05D008265 6.8e-74 283.5 1122 28.2
Atru.chr13.488 Acer truncatum HOM05D006788 ORTHO05D008265 3.3e-68 264.6 462 43.5
A09p19890 Brassica napus HOM05D006788 ORTHO05D008265 3.6e-67 261.2 1079 30.0
BcaC04g21980 Brassica carinata HOM05D006788 ORTHO05D008265 1.8e-66 258.8 1075 30.0
BraA09t37598Z Brassica rapa HOM05D006788 ORTHO05D008265 5.2e-66 257.3 1074 29.9
Gohir.A03G078650 Gossypium hirsutum HOM05D006788 ORTHO05D008265 2.0e-65 255.4 1073 30.2
C09p25220 Brassica napus HOM05D006788 ORTHO05D008265 3.4e-65 254.6 1075 29.7
Medtr8g107730 Medicago truncatula HOM05D006788 ORTHO05D008265 7.5e-65 253.4 1083 30.4
AL8G18450 Arabidopsis lyrata HOM05D006788 ORTHO05D008265 2.9e-64 251.5 1079 28.5
BolC9t55417H Brassica oleracea HOM05D006788 ORTHO05D008265 8.3e-64 250.0 1074 29.4
Sp2g07230 Schrenkiella parvula HOM05D006788 ORTHO05D008265 8.3e-64 250.0 1088 28.5
CARHR181620 Cardamine hirsuta HOM05D006788 ORTHO05D008265 7.1e-63 246.9 1082 27.0
TPR.G1461 Trifolium pratense HOM05D006788 ORTHO05D008265 7.1e-63 246.9 1087 29.4
Hma1.2p1_2195F.1_g316830 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 1.2e-62 246.1 449 39.6
Aa31LG9G12770 Aethionema arabicum HOM05D006788 ORTHO05D008265 2.7e-62 245.0 1074 27.0
Carub.0008s0625 Capsella rubella HOM05D006788 ORTHO05D008265 5.1e-61 240.7 1079 27.5
BcaB07g31060 Brassica carinata HOM05D006788 ORTHO05D008265 4.7e-59 234.2 1082 26.4
Thhalv10003405m.g Eutrema salsugineum HOM05D006788 ORTHO05D008265 5.2e-58 230.7 1083 26.9
Lalb_Chr05g0221391 Lupinus albus HOM05D006788 ORTHO05D008265 5.8e-57 227.3 829 32.1
AT5G42710 Arabidopsis thaliana HOM05D006788 ORTHO05D008265 2.7e-54 218.4 1088 26.8
Cpa.g.sc36.70 Carica papaya HOM05D006788 ORTHO05D008265 6.0e-54 217.2 201 54.2
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 4.3e-52 211.1 1022 28.1
ATR0733G187 Amborella trichopoda HOM05D006788 ORTHO05D008265 4.0e-50 204.5 1266 25.0
Duzib041G0403 Durio zibethinus HOM05D006788 ORTHO05D008265 4.0e-50 204.5 240 51.2
Sed0005360 Sechium edule HOM05D006788 ORTHO05D008265 3.5e-46 191.4 857 29.6
HPP92_019509 Vanilla planifolia HOM05D006788 ORTHO05D008265 1.0e-45 189.9 1049 25.3
RcHm_v2.0_Chr6g0300941 Rosa chinensis HOM05D006788 ORTHO05D008265 1.5e-41 176.0 187 49.7
Psat7g000480 Pisum sativum HOM05D006788 ORTHO05D008265 2.6e-33 148.7 643 31.9
Atru.chr13.490 Acer truncatum HOM05D006788 ORTHO05D008265 4.9e-32 144.4 120 55.0
THA.LOC104813209 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 3.3e-28 131.7 1065 23.8
Os03g0775700 Oryza sativa ssp. japonica HOM05D006788 ORTHO05D008265 1.5e-25 122.9 1109 23.1
CDE07G1328 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 8.4e-24 117.1 179 41.3
Zm00001eb213730 Zea mays HOM05D006788 ORTHO05D008265 1.5e-20 106.3 1109 22.4
unitig_578.g16070 Utricularia gibba HOM05D006788 ORTHO05D008265 1.0e-16 93.6 388 28.6
Cpa.g.sc23.90 Carica papaya HOM05D005593 ORTHO05D006515 1.2e-14 86.7 258 29.8
Manes.03G022200 Manihot esculenta HOM05D005593 ORTHO05D006515 4.6e-14 84.7 198 33.3
Sabra18G0070100 Salix brachista HOM05D005593 ORTHO05D006515 6.1e-14 84.3 207 32.4
Haze_25764 Corylus avellana HOM05D005593 ORTHO05D006515 1.0e-13 83.6 242 30.2
Thecc.09G108000 Theobroma cacao HOM05D005593 ORTHO05D006515 1.8e-13 82.8 966 23.0
TWI34G0072 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 3.0e-13 82.0 169 33.7
MSTRG.19579 Avicennia marina HOM05D005593 ORTHO05D006515 3.9e-13 81.6 232 31.5
Dinv11466 Davidia involucrata HOM05D005593 ORTHO05D006515 1.5e-12 79.7 206 33.0
Rhsim01G0098000 Rhododendron simsii HOM05D005593 ORTHO05D006515 1.5e-12 79.7 125 39.2
PSO782G3244 Papaver somniferum HOM05D005593 ORTHO05D006515 2.0e-12 79.3 206 30.6
CDE04G2912 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 3.3e-12 78.6 264 29.9
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 4.3e-12 78.2 109 44.0
Atru.chr13.489 Acer truncatum HOM05D006788 ORTHO05D008265 9.7e-12 77.0 370 32.2
Oeu064588.2 Olea europaea HOM05D005593 ORTHO05D006515 1.3e-11 76.6 305 28.9
Sopen07g016890 Solanum pennellii HOM05D005593 ORTHO05D006515 2.8e-11 75.5 246 31.3
vmacro20713 Vaccinium macrocarpon HOM05D005593 ORTHO05D006515 3.7e-11 75.1 107 43.0
ATR0315G161 Amborella trichopoda HOM05D005593 ORTHO05D006515 1.1e-10 73.6 958 22.0
Lj7E653T1 Lonicera japonica HOM05D005593 ORTHO05D006515 1.1e-10 73.6 93 39.8
MD15G1182400 Malus domestica HOM05D005593 ORTHO05D006515 1.4e-10 73.2 938 21.3
Potri.018G082300 Populus trichocarpa HOM05D005593 ORTHO05D006515 1.4e-10 73.2 73 52.1
Solyc07g032710.4 Solanum lycopersicum HOM05D005593 ORTHO05D006515 1.8e-10 72.8 246 30.9
CSS0038657 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 2.4e-10 72.4 109 44.0
HanXRQChr12g0355541 Helianthus annuus HOM05D000246 ORTHO05D008363 2.4e-10 72.4 214 32.7
Lalb_Chr14g0371581 Lupinus albus HOM05D005593 ORTHO05D006515 3.1e-10 72.0 206 31.1
Lj2g0010013 Lotus japonicus HOM05D005593 ORTHO05D006515 5.3e-10 71.2 213 28.6
Peaxi162Scf00207g01317 Petunia axillaris HOM05D005593 ORTHO05D006515 9.1e-10 70.5 192 29.7
arahy.Tifrunner.gnm1.ann1.F0KYD5 Arachis hypogaea HOM05D005593 ORTHO05D006515 1.5e-09 69.7 228 29.8
Aqoxy7G01612 Aquilegia oxysepala HOM05D005593 ORTHO05D006515 2.6e-09 68.9 941 21.3
Manes.16G114300 Manihot esculenta HOM05D005593 ORTHO05D006515 2.6e-09 68.9 547 25.8
FAN19G1075 Fragaria x ananassa HOM05D005593 ORTHO05D006515 3.4e-09 68.6 963 23.4
COL.COLO4_34842 Corchorus olitorius HOM05D005593 ORTHO05D006515 4.5e-09 68.2 170 31.2
Gohir.D07G006300 Gossypium hirsutum HOM05D005593 ORTHO05D006515 4.5e-09 68.2 196 33.7
Gorai.001G005900 Gossypium raimondii HOM05D005593 ORTHO05D006515 4.5e-09 68.2 196 33.7
Lalb_Chr22g0352731 Lupinus albus HOM05D005593 ORTHO05D006515 4.5e-09 68.2 955 21.5
Dinv41619 Davidia involucrata HOM05D005593 ORTHO05D006515 7.7e-09 67.4 939 22.0
MELO3C024628.2 Cucumis melo HOM05D005593 ORTHO05D006515 2.2e-08 65.9 166 30.7
Psat1g043640 Pisum sativum HOM05D005593 ORTHO05D006515 2.2e-08 65.9 934 21.9
ECA234G4430 Erigeron canadensis HOM05D005593 ORTHO05D006515 2.9e-08 65.5 262 30.5
ClCG06G008720 Citrullus lanatus HOM05D005593 ORTHO05D006515 3.8e-08 65.1 175 28.6
Glyma.09G192000 Glycine max HOM05D005593 ORTHO05D006515 6.5e-08 64.3 937 21.8
MBI04_g19171_MAGBIO Magnolia biondii HOM05D005593 ORTHO05D006515 6.5e-08 64.3 138 32.6
Lsat_1_v5_gn_5_103481 Lactuca sativa HOM05D005593 ORTHO05D006515 8.5e-08 63.9 226 30.5
Duzib150G1551 Durio zibethinus HOM05D005593 ORTHO05D006515 1.1e-07 63.5 956 21.5
Hund09560 Selenicereus undatus HOM05D005593 ORTHO05D006515 1.1e-07 63.5 168 26.2
C07p11350 Brassica napus HOM05D005593 ORTHO05D006515 1.4e-07 63.2 173 28.3
Ah.09g231030 Amaranthus hybridus HOM05D005593 ORTHO05D006515 2.5e-07 62.4 173 27.7
Ah.14g082180 Amaranthus hybridus HOM05D005593 ORTHO05D006515 2.5e-07 62.4 192 32.8
Cc06_g09850 Coffea canephora HOM05D005593 ORTHO05D006515 2.5e-07 62.4 300 27.3
DCAR_012067 Daucus carota HOM05D005593 ORTHO05D006515 3.2e-07 62.0 240 29.2
Dinv15201 Davidia involucrata HOM05D006788 ORTHO05D008265 3.2e-07 62.0 57 54.4
AT3G24630 Arabidopsis thaliana HOM05D005593 ORTHO05D006515 4.2e-07 61.6 174 29.3
Glyma.07G084900 Glycine max HOM05D005593 ORTHO05D006515 1.6e-06 59.7 934 21.1
TPR.G10037 Trifolium pratense HOM05D005593 ORTHO05D006515 4.7e-06 58.2 231 26.0
BolC7t41614H Brassica oleracea HOM05D005593 ORTHO05D006515 7.9e-06 57.4 235 27.7
Cfa005599 Carpinus fangiana HOM05D005593 ORTHO05D006515 7.9e-06 57.4 53 56.6


User provided reference genes

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