Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro21553 Vaccinium macrocarpon HOM05D004348 ORTHO05D006191 0.0e+00 2375.1 1214 100.0
Rhsim06G0047100 Rhododendron simsii HOM05D004348 ORTHO05D006191 0.0e+00 1887.8 1203 83.4
CSS0012651 Camellia sinensis var. sinensis HOM05D004348 ORTHO05D006191 0.0e+00 1777.3 1212 77.1
Hma1.2p1_0337F.1_g129300 Hydrangea macrophylla HOM05D004348 ORTHO05D006191 0.0e+00 1624.8 1219 70.5
Lj4A53T53 Lonicera japonica HOM05D004348 ORTHO05D006191 0.0e+00 1608.2 1235 69.5
Cfa018516 Carpinus fangiana HOM05D004348 ORTHO05D006191 0.0e+00 1603.6 1219 67.8
TAR625G1112 Trochodendron aralioides HOM05D004348 ORTHO05D006191 0.0e+00 1598.2 1233 68.9
Actinidia15256 Actinidia chinensis HOM05D004348 ORTHO05D006191 0.0e+00 1568.1 1062 76.6
GSVIVG01009553001 Vitis vinifera HOM05D004348 ORTHO05D006191 0.0e+00 1565.4 1205 69.1
Nn5g30212 Nelumbo nucifera HOM05D004348 ORTHO05D006191 0.0e+00 1555.8 1227 67.6
Prupe.1G440200 Prunus persica HOM05D004348 ORTHO05D006191 0.0e+00 1555.8 1228 66.5
Atru.chr13.637 Acer truncatum HOM05D004348 ORTHO05D006191 0.0e+00 1547.7 1228 66.1
Atru.chr1.1668 Acer truncatum HOM05D004348 ORTHO05D006191 0.0e+00 1538.9 1228 66.2
QL02p005708 Quercus lobata HOM05D004348 ORTHO05D006191 0.0e+00 1528.8 1225 65.6
Cc10_g04460 Coffea canephora HOM05D004348 ORTHO05D006191 0.0e+00 1522.7 1228 66.2
RcHm_v2.0_Chr6g0307221 Rosa chinensis HOM05D004348 ORTHO05D006191 0.0e+00 1520.8 1221 65.4
Oeu003300.1 Olea europaea HOM05D004348 ORTHO05D006191 0.0e+00 1512.7 1226 65.3
Oeu057258.1 Olea europaea HOM05D004348 ORTHO05D006191 0.0e+00 1506.5 1232 66.0
Potri.014G034100 Populus trichocarpa HOM05D004348 ORTHO05D006191 0.0e+00 1504.2 1224 65.5
MD15G1086600 Malus domestica HOM05D004348 ORTHO05D006191 0.0e+00 1502.3 1224 65.0
Thecc.08G012500 Theobroma cacao HOM05D004348 ORTHO05D006191 0.0e+00 1496.5 1231 66.0
CiPaw.16G046500 Carya illinoinensis HOM05D004348 ORTHO05D006191 0.0e+00 1495.3 1214 64.7
Sopen04g032870 Solanum pennellii HOM05D004348 ORTHO05D006191 0.0e+00 1493.8 1216 65.0
MD08G1105600 Malus domestica HOM05D004348 ORTHO05D006191 0.0e+00 1493.0 1178 66.1
Solyc04g079280.4 Solanum lycopersicum HOM05D004348 ORTHO05D006191 0.0e+00 1490.3 1216 64.8
PGR031G2748 Punica granatum HOM05D004348 ORTHO05D006191 0.0e+00 1482.2 1206 65.3
PGSC0003DMG400007988 Solanum tuberosum HOM05D004348 ORTHO05D006191 0.0e+00 1481.5 1215 64.1
Manes.05G171200 Manihot esculenta HOM05D004348 ORTHO05D006191 0.0e+00 1478.8 1219 64.2
FvH4_2g34840 Fragaria vesca HOM05D004348 ORTHO05D006191 0.0e+00 1470.3 1206 65.0
Gorai.002G131100 Gossypium raimondii HOM05D004348 ORTHO05D006191 0.0e+00 1468.4 1227 64.7
Gohir.D01G106800 Gossypium hirsutum HOM05D004348 ORTHO05D006191 0.0e+00 1466.8 1225 64.9
DCAR_020931 Daucus carota HOM05D004348 ORTHO05D006191 0.0e+00 1463.0 1157 66.6
MELO3C016737.2 Cucumis melo HOM05D004348 ORTHO05D006191 0.0e+00 1461.0 1226 63.9
Cpa.g.c24415.13 Carica papaya HOM05D004348 ORTHO05D006191 0.0e+00 1458.7 1231 64.6
Aqoxy5G01277 Aquilegia oxysepala HOM05D004348 ORTHO05D006191 0.0e+00 1455.7 1240 63.4
Nitab4.5_0000068g0550 Nicotiana tabacum HOM05D004348 ORTHO05D006191 0.0e+00 1455.7 1214 64.3
COL.COLO4_26463 Corchorus olitorius HOM05D004348 ORTHO05D006191 0.0e+00 1453.7 1195 66.7
Sabra14G0024200 Salix brachista HOM05D004348 ORTHO05D006191 0.0e+00 1440.2 1236 62.2
Sc02g0006980 Simmondsia chinensis HOM05D004348 ORTHO05D006191 0.0e+00 1440.2 1160 64.3
Lj5g0025546 Lotus japonicus HOM05D004348 ORTHO05D006191 0.0e+00 1437.6 1222 63.3
CANSAT78G0057 Cannabis sativa HOM05D004348 ORTHO05D006191 0.0e+00 1422.1 1167 65.1
Phvul.001G020000 Phaseolus vulgaris HOM05D004348 ORTHO05D006191 0.0e+00 1420.6 1218 62.6
AL7G16960 Arabidopsis lyrata HOM05D004348 ORTHO05D006191 0.0e+00 1418.7 1223 62.8
THA.LOC104806947 Tarenaya hassleriana HOM05D004348 ORTHO05D006191 0.0e+00 1414.8 1233 61.3
Sp7g32110 Schrenkiella parvula HOM05D004348 ORTHO05D006191 0.0e+00 1411.7 1229 61.8
BraA01t00399Z Brassica rapa HOM05D004348 ORTHO05D006191 0.0e+00 1411.0 1218 62.3
FAN27G3414 Fragaria x ananassa HOM05D004348 ORTHO05D006191 0.0e+00 1407.5 1232 62.4
A01p04110 Brassica napus HOM05D004348 ORTHO05D006191 0.0e+00 1407.1 1222 61.9
BolC1t00433H Brassica oleracea HOM05D004348 ORTHO05D006191 0.0e+00 1406.0 1218 62.3
C01p04470 Brassica napus HOM05D004348 ORTHO05D006191 0.0e+00 1404.4 1218 62.3
PSO675G6987 Papaver somniferum HOM05D004348 ORTHO05D006191 0.0e+00 1402.5 1194 62.7
Eucgr.F02367 Eucalyptus grandis HOM05D004348 ORTHO05D006191 0.0e+00 1402.1 1225 62.6
arahy.Tifrunner.gnm1.ann1.2EEB7P Arachis hypogaea HOM05D004348 ORTHO05D006191 0.0e+00 1401.0 1176 62.9
arahy.Tifrunner.gnm1.ann1.3D95JG Arachis hypogaea HOM05D004348 ORTHO05D006191 0.0e+00 1401.0 1176 62.9
Lalb_Chr24g0399211 Lupinus albus HOM05D004348 ORTHO05D006191 0.0e+00 1400.2 1188 62.5
Medtr1g019960 Medicago truncatula HOM05D004348 ORTHO05D006191 0.0e+00 1397.9 1233 62.4
Duzib093G0393 Durio zibethinus HOM05D004348 ORTHO05D006191 0.0e+00 1394.4 1190 64.1
ECA247G1923 Erigeron canadensis HOM05D004348 ORTHO05D006191 0.0e+00 1393.6 1189 63.6
Psat6g012000 Pisum sativum HOM05D004348 ORTHO05D006191 0.0e+00 1391.7 1232 61.8
AUR62039313 Chenopodium quinoa HOM05D004348 ORTHO05D006191 0.0e+00 1390.2 1082 67.7
Thhalv10024246m.g Eutrema salsugineum HOM05D004348 ORTHO05D006191 0.0e+00 1388.2 1236 61.2
Sed0012719 Sechium edule HOM05D004348 ORTHO05D006191 0.0e+00 1384.0 1201 61.9
ClCG05G019730 Citrullus lanatus HOM05D004348 ORTHO05D006191 0.0e+00 1377.1 1228 60.9
FAN15G1136 Fragaria x ananassa HOM05D004348 ORTHO05D006191 0.0e+00 1377.1 1173 63.3
EL10Ac1g01783 Beta vulgaris HOM05D004348 ORTHO05D006191 0.0e+00 1374.8 1200 61.3
VMungo0647G0261 Vigna mungo HOM05D004348 ORTHO05D006191 0.0e+00 1366.3 1205 60.8
SGA_v2.0_scaffold226G43137 Striga asiatica HOM05D004348 ORTHO05D006191 0.0e+00 1365.5 1173 62.1
Peaxi162Scf00528g00825 Petunia axillaris HOM05D004348 ORTHO05D006191 0.0e+00 1364.7 1218 61.3
HanXRQChr02g0038751 Helianthus annuus HOM05D004348 ORTHO05D006191 0.0e+00 1360.5 1212 62.0
AUR62022445 Chenopodium quinoa HOM05D004348 ORTHO05D006191 0.0e+00 1351.3 1084 65.9
Dinv39334 Davidia involucrata HOM05D004348 ORTHO05D006191 0.0e+00 1349.3 1057 69.8
Migut.N02696 Erythranthe guttata HOM05D004348 ORTHO05D006191 0.0e+00 1342.8 1222 60.2
Hund26625 Selenicereus undatus HOM05D004348 ORTHO05D006191 0.0e+00 1336.2 1229 60.1
Dinv35980 Davidia involucrata HOM05D004348 ORTHO05D006191 0.0e+00 1332.4 925 74.8
CDE10G0798 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 0.0e+00 1309.3 1239 57.3
Ciclev10000175m.g Citrus clementina HOM05D004348 ORTHO05D006191 0.0e+00 1293.9 955 68.4
ATR1159G040 Amborella trichopoda HOM05D004348 ORTHO05D006191 0.0e+00 1286.9 1226 58.0
HanXRQChr16g0507461 Helianthus annuus HOM05D004348 ORTHO05D006191 0.0e+00 1261.5 1173 59.0
Glyma.17G244300 Glycine max HOM05D004348 ORTHO05D006191 0.0e+00 1255.4 1124 60.9
CAN.G371.44 Capsicum annuum HOM05D004348 ORTHO05D006191 0.0e+00 1253.8 952 67.2
CsaV3_4G034150 Cucumis sativus L. HOM05D004348 ORTHO05D006191 0.0e+00 1249.6 961 66.8
Lsat_1_v5_gn_4_124060 Lactuca sativa HOM05D004348 ORTHO05D006191 0.0e+00 1243.0 1233 57.1
CDE10G0919 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 0.0e+00 1233.4 1152 57.2
Gohir.A01G118500 Gossypium hirsutum HOM05D004348 ORTHO05D006191 0.0e+00 1228.8 953 66.5
TPR.G13698 Trifolium pratense HOM05D004348 ORTHO05D006191 0.0e+00 1225.3 1038 63.1
CARHR242470 Cardamine hirsuta HOM05D004348 ORTHO05D006191 0.0e+00 1219.9 971 64.8
Sed0015301 Sechium edule HOM05D004348 ORTHO05D006191 0.0e+00 1213.0 952 65.5
Ca_13305_v3 Cicer arietinum L. HOM05D004348 ORTHO05D006191 0.0e+00 1208.4 1200 57.8
ECA232G4920 Erigeron canadensis HOM05D004348 ORTHO05D006191 0.0e+00 1206.8 1077 61.4
AT4G34310 Arabidopsis thaliana HOM05D004348 ORTHO05D006191 0.0e+00 1200.7 962 64.8
Carub.0007s0605 Capsella rubella HOM05D004348 ORTHO05D006191 0.0e+00 1197.2 953 64.4
Nitab4.5_0005301g0040 Nicotiana tabacum HOM05D004348 ORTHO05D006191 0.0e+00 1183.7 1033 62.2
Glyma.14G081100 Glycine max HOM05D004348 ORTHO05D006191 0.0e+00 1130.2 959 61.2
Zm00001eb006390 Zea mays HOM05D004348 ORTHO05D006191 0.0e+00 1114.8 1213 53.5
MBI06_g27707_MAGBIO Magnolia biondii HOM05D004348 ORTHO05D006191 0.0e+00 1085.1 1031 58.9
Aa31LG2G16180 Aethionema arabicum HOM05D004348 ORTHO05D006191 0.0e+00 1083.6 874 63.6
HPP92_019297 Vanilla planifolia HOM05D004348 ORTHO05D006191 1.5e-308 1063.1 1101 54.9
SHI08301 Sapria himalayana HOM05D004348 ORTHO05D006191 2.3e-288 996.1 1036 54.8
unitig_26.g10059 Utricularia gibba HOM05D004348 ORTHO05D006191 3.9e-243 845.9 943 52.0
SMO144G0009 Selaginella moellendorffii HOM05D004348 ORTHO05D006191 1.3e-235 820.8 1087 45.6
Mapoly0033s0109 Marchantia polymorpha HOM05D004348 ORTHO05D006191 6.6e-235 818.5 1163 44.0
AagrBONN_evm.TU.Sc2ySwM_344.1636 Anthoceros agrestis HOM05D004348 ORTHO05D006191 4.9e-230 802.4 1200 43.5
Haze_17559 Corylus avellana HOM05D004348 ORTHO05D006191 3.3e-226 789.6 1237 43.8
Pp3c17_5660 Physcomitrium patens HOM05D004348 ORTHO05D006191 1.6e-212 744.2 1122 42.0
Lsat_1_v5_gn_8_33681 Lactuca sativa HOM05D004348 ORTHO05D006191 5.5e-189 666.0 742 54.2
Os03g0185500 Oryza sativa ssp. japonica HOM05D004348 ORTHO05D006191 1.7e-182 644.4 518 62.2
SEGI_07910 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 7.5e-178 629.0 577 58.6
Potri.002G128201 Populus trichocarpa HOM05D004348 ORTHO05D006191 4.5e-167 593.2 461 64.0
SEGI_03031 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 3.5e-159 567.0 742 47.3
CBR_g45541 Chara braunii HOM05D004348 ORTHO05D006191 6.0e-119 433.3 1362 29.3
Lsat_1_v5_gn_1_21400 Lactuca sativa HOM05D004348 ORTHO05D006191 8.1e-108 396.4 332 64.5
Lsat_1_v5_gn_1_42721 Lactuca sativa HOM05D004348 ORTHO05D006191 8.1e-108 396.4 332 64.5
Lsat_1_v5_gn_9_17721 Lactuca sativa HOM05D004348 ORTHO05D006191 8.1e-108 396.4 332 64.5
MSTRG.22273 Avicennia marina HOM05D004348 ORTHO05D006191 3.9e-94 350.9 315 56.5
unitig_26.g10060 Utricularia gibba HOM05D004348 ORTHO05D006191 2.5e-88 331.6 202 76.2
Lsat_1_v5_gn_3_76560 Lactuca sativa HOM05D004348 ORTHO05D006191 6.1e-79 300.4 235 68.1
Lsat_1_v5_gn_4_501 Lactuca sativa HOM05D004348 ORTHO05D006191 6.1e-79 300.4 235 68.1
CiPaw.16G046800 Carya illinoinensis HOM05D004348 ORTHO05D006191 6.7e-78 297.0 181 77.3
MSTRG.22274 Avicennia marina HOM05D004348 ORTHO05D006191 4.4e-77 294.3 166 81.3
Lsat_1_v5_gn_2_12981 Lactuca sativa HOM05D004348 ORTHO05D006191 5.3e-75 287.3 258 62.0
HPP92_028299 Vanilla planifolia HOM05D004348 ORTHO05D006191 5.0e-73 280.8 154 84.4
MD08G1105800 Malus domestica HOM05D004348 ORTHO05D006191 1.1e-72 279.6 155 83.9
SHI08298 Sapria himalayana HOM05D004348 ORTHO05D006191 4.5e-66 257.7 151 80.1
Lsat_1_v5_gn_9_98160 Lactuca sativa HOM05D004348 ORTHO05D005602 2.1e-63 248.8 183 72.7
Lsat_1_v5_gn_1_20621 Lactuca sativa HOM05D004348 ORTHO05D006191 7.0e-59 233.8 132 80.3
Aa31LG2G16170 Aethionema arabicum HOM05D004348 ORTHO05D006191 3.1e-51 208.4 257 54.1
SEGI_30856 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 1.2e-50 206.5 313 42.8
Haze_18739 Corylus avellana HOM05D004348 ORTHO05D006191 7.2e-48 197.2 175 58.3
HPP92_019296 Vanilla planifolia HOM05D004348 ORTHO05D006191 8.0e-47 193.7 112 83.0
Cre16.g686501 Chlamydomonas reinhardtii HOM05D004348 ORTHO05D006191 1.0e-41 176.8 266 38.3
TPR.G40548 Trifolium pratense HOM05D004348 ORTHO05D006191 6.6e-41 174.1 99 81.8
PRCOL_00001182 Prasinoderma coloniale HOM05D004348 ORTHO05D006191 9.5e-40 170.2 440 33.0
SEGI_03645 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 1.3e-28 133.3 238 39.5
Mapoly0064s0093 Marchantia polymorpha HOM05D004348 ORTHO05D000239 3.5e-26 125.2 279 31.9
Lsat_1_v5_gn_9_67901 Lactuca sativa HOM05D004348 ORTHO05D006191 6.0e-26 124.4 100 68.0
Mapoly0049s0015 Marchantia polymorpha HOM05D004348 ORTHO05D000239 6.6e-25 120.9 292 30.5
Mapoly1060s0002 Marchantia polymorpha HOM05D004348 ORTHO05D000239 4.3e-24 118.2 317 29.7
Mapoly0893s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 5.6e-24 117.9 285 30.9
Mapoly0031s0035 Marchantia polymorpha HOM05D004348 ORTHO05D000239 7.3e-24 117.5 312 29.5
Atru.chr1.1667 Acer truncatum HOM05D004348 ORTHO05D006191 1.2e-23 116.7 157 49.7
CAN.G371.43 Capsicum annuum HOM05D004348 ORTHO05D006191 1.6e-23 116.3 191 45.0
Mapoly0062s0120 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.4e-22 113.2 316 29.4
Lsat_1_v5_gn_5_11760 Lactuca sativa HOM05D004348 ORTHO05D006191 6.8e-22 110.9 76 68.4
Mapoly0017s0011 Marchantia polymorpha HOM05D004348 ORTHO05D006191 4.4e-21 108.2 220 38.2
Mapoly0007s0015 Marchantia polymorpha HOM05D000005 ORTHO05D000239 5.8e-21 107.8 310 30.0
Mapoly0107s0021 Marchantia polymorpha HOM05D004348 ORTHO05D000239 5.8e-21 107.8 281 29.5
Mapoly0067s0038 Marchantia polymorpha HOM05D000005 ORTHO05D000239 7.5e-21 107.5 310 30.3
Sp7g06010 Schrenkiella parvula HOM05D004348 ORTHO05D006191 1.3e-20 106.7 79 68.4
Mapoly0200s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 8.3e-20 104.0 276 26.8
Mapoly0200s0002 Marchantia polymorpha HOM05D004348 ORTHO05D000239 9.2e-19 100.5 289 28.4
Mapoly2546s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.1e-18 99.4 297 26.6
Mapoly0637s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.7e-18 99.0 303 27.4
Mapoly0064s0096 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.5e-16 92.4 157 34.4
Mapoly0041s0095 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.2e-15 90.1 301 25.6
Mapoly0016s0164 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.4e-14 85.9 158 36.1
GSVIVG01009550001 Vitis vinifera HOM05D004348 ORTHO05D006191 5.2e-14 84.7 55 76.4
Mapoly0067s0037 Marchantia polymorpha HOM05D011080 ORTHO05D000239 8.9e-14 84.0 309 23.3
SGA_v2.0_scaffold6G03459 Striga asiatica HOM05D004348 ORTHO05D006191 2.0e-13 82.8 46 80.4
Pp3c9_17530 Physcomitrium patens HOM05D031884 ORTHO05D311885 9.9e-13 80.5 329 25.5
Mapoly0053s0005 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.7e-12 79.7 305 24.6
Mapoly0062s0059 Marchantia polymorpha HOM05D000005 ORTHO05D000239 5.4e-11 74.7 188 30.9
Mapoly0071s0031 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.7e-09 69.7 319 23.8
Mapoly0147s0041 Marchantia polymorpha HOM05D000242 ORTHO05D000700 1.7e-09 69.7 251 25.5
Pp3c24_4860 Physcomitrium patens HOM05D004348 ORTHO05D000239 1.7e-09 69.7 157 32.5
Cfa022866 Carpinus fangiana HOM05D012225 ORTHO05D125906 2.3e-09 69.3 214 25.7
Mapoly0108s0037 Marchantia polymorpha HOM05D029023 ORTHO05D030122 3.9e-09 68.6 299 24.1
Cfa026732 Carpinus fangiana HOM05D012225 ORTHO05D124966 8.7e-09 67.4 251 26.3
Mapoly0052s0114 Marchantia polymorpha HOM05D029023 ORTHO05D030122 8.7e-09 67.4 299 24.1
Mapoly0555s0001 Marchantia polymorpha HOM05D029023 ORTHO05D030122 1.5e-08 66.6 261 24.9
SGA_v2.0_scaffold162G37946 Striga asiatica HOM05D004348 ORTHO05D006191 1.5e-08 66.6 38 76.3
Aa31LG2G16190 Aethionema arabicum HOM05D004348 ORTHO05D006191 7.3e-08 64.3 46 65.2
Cfa023648 Carpinus fangiana HOM05D012225 ORTHO05D125365 7.3e-08 64.3 261 25.3
Cfa022816 Carpinus fangiana HOM05D012225 ORTHO05D124422 9.6e-08 63.9 222 26.1
Cfa025012 Carpinus fangiana HOM05D012225 ORTHO05D124848 9.6e-08 63.9 147 27.2
Mapoly0016s0166 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.6e-07 63.2 204 25.5
Lsat_1_v5_gn_9_17240 Lactuca sativa HOM05D004348 ORTHO05D006191 8.1e-07 60.8 63 52.4
Mapoly0346s0002 Marchantia polymorpha HOM05D020945 ORTHO05D254421 3.1e-06 58.9 107 33.6
Mapoly0147s0004 Marchantia polymorpha HOM05D000242 ORTHO05D000700 4.0e-06 58.5 204 27.0
Mapoly0147s0044 Marchantia polymorpha HOM05D000242 ORTHO05D000700 4.0e-06 58.5 255 23.9


User provided reference genes

Program Settings