Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 5.1e-49 197.6 111 100.0
Actinidia27471 Actinidia chinensis HOM05D006762 ORTHO05D003505 1.4e-38 162.9 111 83.8
Rhsim07G0109700 Rhododendron simsii HOM05D006762 ORTHO05D003505 1.4e-35 152.9 100 89.0
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 5.6e-32 141.0 111 73.9
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 3.7e-31 138.3 111 73.0
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 3.1e-30 135.2 111 71.2
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 6.4e-28 127.5 111 71.2
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 4.2e-27 124.8 111 66.7
CiPaw.11G079800 Carya illinoinensis HOM05D006762 ORTHO05D003505 4.6e-26 121.3 111 66.7
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 4.6e-26 121.3 113 68.1
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 6.0e-26 120.9 111 64.9
Lj8A263T41 Lonicera japonica HOM05D006762 ORTHO05D003505 7.9e-26 120.6 104 78.8
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 3.9e-25 118.2 111 63.1
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 3.9e-25 118.2 111 63.1
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 1.1e-24 116.7 111 63.1
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 1.1e-24 116.7 111 63.1
Dinv39153 Davidia involucrata HOM05D000502 ORTHO05D000356 1.9e-24 115.9 92 76.1
Thhalv10001082m.g Eutrema salsugineum HOM05D006762 ORTHO05D003505 4.3e-24 114.8 102 67.6
CARHR173910 Cardamine hirsuta HOM05D006762 ORTHO05D003505 7.4e-24 114.0 100 65.0
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 9.6e-24 113.6 107 63.6
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 9.6e-24 113.6 111 64.0
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 9.6e-24 113.6 107 63.6
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 9.6e-24 113.6 111 64.0
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 2.1e-23 112.5 111 65.8
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 2.1e-23 112.5 111 63.1
Psat4g072480 Pisum sativum HOM05D006762 ORTHO05D003505 2.8e-23 112.1 111 61.3
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 2.8e-23 112.1 110 66.4
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 4.8e-23 111.3 112 61.6
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 6.2e-23 110.9 112 65.2
CiPaw.12G051800 Carya illinoinensis HOM05D006762 ORTHO05D003505 6.2e-23 110.9 100 67.0
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 3.1e-22 108.6 111 62.2
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 3.1e-22 108.6 111 60.4
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 3.1e-22 108.6 111 59.5
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 6.9e-22 107.5 111 65.8
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 6.9e-22 107.5 111 65.8
Lsat_1_v5_gn_6_90840 Lactuca sativa HOM05D006762 ORTHO05D003505 6.9e-22 107.5 100 66.0
BcaC03g16962 Brassica carinata HOM05D006762 ORTHO05D003505 9.0e-22 107.1 102 61.8
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 9.0e-22 107.1 111 60.4
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 9.0e-22 107.1 111 61.3
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 9.0e-22 107.1 101 67.3
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 2.0e-21 105.9 111 58.6
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 2.6e-21 105.5 112 61.6
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 2.6e-21 105.5 111 67.6
AL8G10530 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 4.5e-21 104.8 98 64.3
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 4.5e-21 104.8 111 60.4
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 7.6e-21 104.0 111 60.4
Carub.0008s0032 Capsella rubella HOM05D006762 ORTHO05D003505 1.0e-20 103.6 95 62.1
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 1.0e-20 103.6 111 59.5
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 1.0e-20 103.6 110 60.0
MD04G1063100 Malus domestica HOM05D006762 ORTHO05D003505 3.8e-20 101.7 104 60.6
BraA06t27376Z Brassica rapa HOM05D006762 ORTHO05D003505 4.9e-20 101.3 100 61.0
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 6.5e-20 100.9 112 60.7
Thecc.03G250100 Theobroma cacao HOM05D006762 ORTHO05D003505 1.1e-19 100.1 100 66.0
Duzib205G1027 Durio zibethinus HOM05D006762 ORTHO05D003505 2.5e-19 99.0 102 63.7
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 3.2e-19 98.6 110 59.1
BolC7t43652H Brassica oleracea HOM05D006762 ORTHO05D003505 4.2e-19 98.2 96 61.5
Solyc08g078560.3 Solanum lycopersicum HOM05D006762 ORTHO05D003505 5.5e-19 97.8 111 57.7
TPR.G37627 Trifolium pratense HOM05D006762 ORTHO05D003505 5.5e-19 97.8 103 60.2
Duzib084G1100 Durio zibethinus HOM05D006762 ORTHO05D003505 7.1e-19 97.4 101 63.4
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 9.3e-19 97.1 110 56.4
AT5G47455 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 1.2e-18 96.7 96 60.4
Lj4g0004620 Lotus japonicus HOM05D006762 ORTHO05D003505 1.2e-18 96.7 112 58.0
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 1.2e-18 96.7 112 58.9
CsaV3_3G002630 Cucumis sativus L. HOM05D006762 ORTHO05D003505 1.6e-18 96.3 102 57.8
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 3.5e-18 95.1 116 57.8
Prupe.5G068300 Prunus persica HOM05D006762 ORTHO05D003505 3.5e-18 95.1 100 60.0
Carub.0007s2409 Capsella rubella HOM05D006762 ORTHO05D003505 6.0e-18 94.4 100 61.0
Lalb_Chr16g0386731 Lupinus albus HOM05D006762 ORTHO05D003505 1.0e-17 93.6 102 60.8
Sopen08g027040 Solanum pennellii HOM05D006762 ORTHO05D003505 1.0e-17 93.6 100 60.0
RcHm_v2.0_Chr7g0203511 Rosa chinensis HOM05D006762 ORTHO05D003505 1.3e-17 93.2 103 59.2
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 1.8e-17 92.8 111 54.1
Ca_21971_v3 Cicer arietinum L. HOM05D006762 ORTHO05D003505 2.3e-17 92.4 103 61.2
Nn6g33933 Nelumbo nucifera HOM05D006762 ORTHO05D003505 2.3e-17 92.4 104 62.5
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 5.1e-17 91.3 111 58.6
CDE12G0636 Ceratophyllum demersum HOM05D006762 ORTHO05D003505 2.5e-16 89.0 112 54.5
Hund14549 Selenicereus undatus HOM05D006762 ORTHO05D003505 3.3e-16 88.6 100 60.0
AT4G17310 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 5.7e-16 87.8 100 61.0
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 1.3e-15 86.7 103 55.3
FvH4_5g19060 Fragaria vesca HOM05D006762 ORTHO05D003505 1.3e-15 86.7 101 57.4
PGR031G2035 Punica granatum HOM05D006762 ORTHO05D003505 1.3e-15 86.7 100 61.0
Glyma.17G142500 Glycine max HOM05D006762 ORTHO05D003505 2.2e-15 85.9 100 56.0
unitig_21.g20319 Utricularia gibba HOM05D006762 ORTHO05D003505 2.2e-15 85.9 111 55.9
TWI81G0572 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 3.7e-15 85.1 103 56.3
MSTRG.12104 Avicennia marina HOM05D006762 ORTHO05D003505 4.8e-15 84.7 100 55.0
Potri.001G333800 Populus trichocarpa HOM05D006762 ORTHO05D003505 1.1e-14 83.6 102 57.8
CSS0021998 Camellia sinensis var. sinensis HOM05D006762 ORTHO05D003505 1.8e-14 82.8 101 58.4
Glyma.05G060100 Glycine max HOM05D006762 ORTHO05D003505 1.8e-14 82.8 100 56.0
ECA240G1429 Erigeron canadensis HOM05D006762 ORTHO05D003505 4.1e-14 81.6 100 54.0
THA.LOC104812806 Tarenaya hassleriana HOM05D006762 ORTHO05D003505 6.9e-14 80.9 100 57.0
TWI60G1284 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 1.2e-13 80.1 106 53.8
Cc08_g12340 Coffea canephora HOM05D006762 ORTHO05D003505 4.5e-13 78.2 103 52.4
SalBow4G0096 Salvia bowleyana HOM05D006762 ORTHO05D003505 1.7e-12 76.3 91 54.9
SalBow4G2872 Salvia bowleyana HOM05D006762 ORTHO05D003505 1.7e-12 76.3 91 54.9
Manes.02G040300 Manihot esculenta HOM05D006762 ORTHO05D003505 2.2e-12 75.9 102 52.9
Phvul.003G221200 Phaseolus vulgaris HOM05D006762 ORTHO05D003505 2.2e-12 75.9 102 53.9
AUR62019952 Chenopodium quinoa HOM05D006762 ORTHO05D003505 5.0e-12 74.7 111 50.5
QL04p035820 Quercus lobata HOM05D006762 ORTHO05D003505 6.5e-12 74.3 109 51.4
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 1.1e-11 73.6 114 53.5
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 1.4e-11 73.2 112 50.9
AUR62007089 Chenopodium quinoa HOM05D006762 ORTHO05D003505 2.5e-11 72.4 111 49.5
Os02g0658300 Oryza sativa ssp. japonica HOM05D006762 ORTHO05D003505 2.5e-11 72.4 54 79.6
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 1.8e-09 66.2 79 55.7
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 5.1e-09 64.7 77 51.9
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 8.8e-09 63.9 71 54.9
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 1.5e-08 63.2 70 55.7
ATR0317G117 Amborella trichopoda HOM05D006762 ORTHO05D003505 2.5e-08 62.4 102 51.0
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 2.5e-08 62.4 106 47.2
Actinidia05208 Actinidia chinensis HOM05D048153 ORTHO05D003505 3.3e-08 62.0 42 85.7
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 3.3e-08 62.0 63 54.0
Glyma.18G109000 Glycine max HOM05D006762 ORTHO05D003505 4.3e-08 61.6 99 49.5
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 5.7e-08 61.2 76 53.9
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 5.7e-08 61.2 46 67.4
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 5.7e-08 61.2 46 67.4
MBI01_g42895_MAGBIO Magnolia biondii HOM05D007429 ORTHO05D003505 5.7e-08 61.2 50 62.0
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 5.7e-08 61.2 88 47.7
SEGI_29263 Sequoiadendron giganteum HOM05D006762 ORTHO05D003505 9.7e-08 60.5 113 44.2
arahy.Tifrunner.gnm1.ann1.A5XQNM Arachis hypogaea HOM05D006762 ORTHO05D003505 1.7e-07 59.7 103 46.6
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 2.2e-07 59.3 111 46.8
Haze_07905 Corylus avellana HOM05D000502 ORTHO05D000356 2.8e-07 58.9 60 61.7
Lalb_Chr08g0243031 Lupinus albus HOM05D007429 ORTHO05D003505 2.8e-07 58.9 51 58.8
arahy.Tifrunner.gnm1.ann1.D6ADVN Arachis hypogaea HOM05D006762 ORTHO05D003505 4.8e-07 58.2 100 46.0
Gohir.D08G270600 Gossypium hirsutum HOM05D007429 ORTHO05D003505 4.8e-07 58.2 112 46.4
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 6.3e-07 57.8 73 52.1
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 6.3e-07 57.8 93 46.2
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 8.2e-07 57.4 89 46.1
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 1.1e-06 57.0 77 50.6
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 1.1e-06 57.0 77 50.6
PSO210G4486 Papaver somniferum HOM05D003477 ORTHO05D004043 1.4e-06 56.6 56 58.9
HPP92_025465 Vanilla planifolia HOM05D006762 ORTHO05D003505 1.8e-06 56.2 104 47.1
CDE04G0461 Ceratophyllum demersum HOM05D005822 ORTHO05D007267 2.4e-06 55.8 63 58.7
Dinv44108 Davidia involucrata HOM05D006762 ORTHO05D003505 2.4e-06 55.8 65 55.4
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 2.4e-06 55.8 112 42.0
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 2.4e-06 55.8 109 37.6
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 2.4e-06 55.8 111 36.9
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 3.1e-06 55.5 104 43.3
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 3.1e-06 55.5 77 48.1
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 3.1e-06 55.5 111 36.9
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 4.1e-06 55.1 75 50.7
MBI04_g11440_MAGBIO Magnolia biondii HOM05D003477 ORTHO05D004043 4.1e-06 55.1 50 64.0
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 4.1e-06 55.1 100 42.0
AUR62009266 Chenopodium quinoa HOM05D007429 ORTHO05D003505 5.3e-06 54.7 73 47.9
AUR62042440 Chenopodium quinoa HOM05D007429 ORTHO05D003505 5.3e-06 54.7 73 47.9
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 5.3e-06 54.7 48 56.2
Dinv27908 Davidia involucrata HOM05D007429 ORTHO05D003505 5.3e-06 54.7 68 45.6
ECA233G1441 Erigeron canadensis HOM05D007429 ORTHO05D003505 5.3e-06 54.7 48 58.3
Glyma.17G210100 Glycine max HOM05D006762 ORTHO05D003505 5.3e-06 54.7 99 44.4
VMungo1309G0862 Vigna mungo HOM05D007429 ORTHO05D003505 5.3e-06 54.7 74 50.0
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 6.9e-06 54.3 111 40.5
arahy.Tifrunner.gnm1.ann1.8JK4ZI Arachis hypogaea HOM05D006762 ORTHO05D003505 6.9e-06 54.3 100 46.0
AUR62014041 Chenopodium quinoa HOM05D007293 ORTHO05D009143 6.9e-06 54.3 108 42.6
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 6.9e-06 54.3 67 52.2
QL06p040030 Quercus lobata HOM05D003477 ORTHO05D004043 6.9e-06 54.3 103 45.6
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 6.9e-06 54.3 111 42.3
Actinidia13337 Actinidia chinensis HOM05D007429 ORTHO05D003505 9.1e-06 53.9 111 38.7
arahy.Tifrunner.gnm1.ann1.QP3VPD Arachis hypogaea HOM05D006762 ORTHO05D003505 9.1e-06 53.9 102 46.1
CiPaw.08G026200 Carya illinoinensis HOM05D007429 ORTHO05D003505 9.1e-06 53.9 112 40.2
TAR376G0403 Trochodendron aralioides HOM05D003477 ORTHO05D004043 9.1e-06 53.9 83 45.8


User provided reference genes

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