Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro21498 Vaccinium macrocarpon HOM05D004460 ORTHO05D005254 0.0e+00 1101.3 561 100.0
Actinidia37745 Actinidia chinensis HOM05D004460 ORTHO05D005254 3.8e-225 785.0 492 81.3
Actinidia03999 Actinidia chinensis HOM05D004460 ORTHO05D005254 3.5e-223 778.5 492 80.9
Lj1A198T34 Lonicera japonica HOM05D004460 ORTHO05D005254 3.1e-219 765.4 486 80.7
Prupe.6G004900 Prunus persica HOM05D004460 ORTHO05D005254 6.9e-219 764.2 497 79.1
Cfa020869 Carpinus fangiana HOM05D004460 ORTHO05D005254 2.6e-218 762.3 486 80.7
Rhsim03G0064700 Rhododendron simsii HOM05D004460 ORTHO05D005254 5.4e-216 754.6 503 78.9
GSVIVG01024777001 Vitis vinifera HOM05D004460 ORTHO05D005254 7.1e-216 754.2 484 79.8
Dinv32698 Davidia involucrata HOM05D004460 ORTHO05D005254 1.6e-215 753.1 474 81.4
RcHm_v2.0_Chr5g0083231 Rosa chinensis HOM05D004460 ORTHO05D005254 2.7e-215 752.3 494 77.9
QL02p091623 Quercus lobata HOM05D004460 ORTHO05D005254 3.9e-214 748.4 497 77.9
QL02p091680 Quercus lobata HOM05D004460 ORTHO05D005254 6.6e-214 747.7 497 77.7
Atru.chr3.3576 Acer truncatum HOM05D004460 ORTHO05D005254 8.7e-214 747.3 493 77.9
TWI79G0138 Tripterygium wilfordii HOM05D004460 ORTHO05D005254 8.7e-214 747.3 497 77.5
Nn1g07453 Nelumbo nucifera HOM05D004460 ORTHO05D005254 1.5e-213 746.5 499 77.0
Haze_19298 Corylus avellana HOM05D004460 ORTHO05D005254 2.5e-213 745.7 486 79.2
MD11G1007700 Malus domestica HOM05D004460 ORTHO05D005254 2.5e-213 745.7 484 79.3
Ciclev10001076m.g Citrus clementina HOM05D004460 ORTHO05D005254 4.3e-213 745.0 489 78.3
PSO675G8453 Papaver somniferum HOM05D004460 ORTHO05D005254 4.3e-213 745.0 486 78.2
MSTRG.19754 Avicennia marina HOM05D004460 ORTHO05D005254 1.3e-212 743.4 490 77.6
MD11G1006700 Malus domestica HOM05D004460 ORTHO05D005254 2.1e-212 742.7 484 78.9
CiPaw.16G116700 Carya illinoinensis HOM05D004460 ORTHO05D005254 2.8e-212 742.3 488 78.7
Duzib150G0635 Durio zibethinus HOM05D004460 ORTHO05D005254 3.6e-212 741.9 491 77.8
Sopen08g031070 Solanum pennellii HOM05D004460 ORTHO05D005254 2.4e-211 739.2 492 76.4
Thecc.09G346400 Theobroma cacao HOM05D004460 ORTHO05D005254 9.0e-211 737.3 481 79.0
Migut.J01586 Erythranthe guttata HOM05D004460 ORTHO05D005254 1.2e-210 736.9 486 76.7
Gohir.D03G136700 Gossypium hirsutum HOM05D004460 ORTHO05D005254 1.2e-210 736.9 487 77.6
Gorai.003G143800 Gossypium raimondii HOM05D004460 ORTHO05D005254 1.2e-210 736.9 487 77.6
Manes.04G016600 Manihot esculenta HOM05D004460 ORTHO05D005254 1.2e-210 736.9 488 77.9
Potri.016G130000 Populus trichocarpa HOM05D004460 ORTHO05D005254 1.2e-210 736.9 489 77.5
Aqoxy3G02716 Aquilegia oxysepala HOM05D004460 ORTHO05D005254 1.5e-210 736.5 486 77.8
Gohir.A03G031600 Gossypium hirsutum HOM05D004460 ORTHO05D005254 1.5e-210 736.5 487 77.4
Solyc08g082840.3 Solanum lycopersicum HOM05D004460 ORTHO05D005254 2.0e-210 736.1 492 76.2
CSS0019934 Camellia sinensis var. sinensis HOM05D004460 ORTHO05D005254 9.9e-210 733.8 415 88.9
CANSAT11G2169 Cannabis sativa HOM05D004460 ORTHO05D005254 1.7e-209 733.0 485 78.4
ECA248G3543 Erigeron canadensis HOM05D004460 ORTHO05D005254 2.9e-209 732.3 483 77.4
FvH4_3g45430 Fragaria vesca HOM05D004460 ORTHO05D005254 2.9e-209 732.3 530 72.5
CsaV3_1G042370 Cucumis sativus L. HOM05D004460 ORTHO05D005254 2.4e-208 729.2 484 76.2
HanXRQChr01g0023931 Helianthus annuus HOM05D004460 ORTHO05D005254 3.2e-208 728.8 474 78.7
FvH4_6g19460 Fragaria vesca HOM05D004460 ORTHO05D005254 7.1e-208 727.6 508 74.2
SGA_v2.0_scaffold66G22336 Striga asiatica HOM05D004460 ORTHO05D005254 9.3e-208 727.2 486 75.5
Hund03380 Selenicereus undatus HOM05D004460 ORTHO05D005254 2.1e-207 726.1 488 75.6
CANSAT11G0913 Cannabis sativa HOM05D004460 ORTHO05D005254 7.9e-207 724.2 485 77.5
Lalb_Chr14g0374551 Lupinus albus HOM05D004460 ORTHO05D005254 7.9e-207 724.2 492 73.8
Glyma.20G052000 Glycine max HOM05D004460 ORTHO05D005254 2.3e-206 722.6 490 76.1
arahy.Tifrunner.gnm1.ann1.B5CH19 Arachis hypogaea HOM05D004460 ORTHO05D005254 3.0e-206 722.2 483 76.0
unitig_899.g14459 Utricularia gibba HOM05D004460 ORTHO05D005254 3.9e-206 721.8 491 75.8
Sc04g0002220 Simmondsia chinensis HOM05D004460 ORTHO05D005254 6.7e-206 721.1 485 75.3
Phvul.005G132400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 8.7e-206 720.7 484 75.8
arahy.Tifrunner.gnm1.ann1.NXCQ1Z Arachis hypogaea HOM05D004460 ORTHO05D005254 1.1e-205 720.3 483 75.8
ATR0315G079 Amborella trichopoda HOM05D004460 ORTHO05D005254 2.5e-205 719.2 492 74.4
Eucgr.J00902 Eucalyptus grandis HOM05D004460 ORTHO05D005254 3.3e-205 718.8 487 75.2
arahy.Tifrunner.gnm1.ann1.N29Z6M Arachis hypogaea HOM05D004460 ORTHO05D005254 3.7e-204 715.3 483 75.2
Cpa.g.sc65.21 Carica papaya HOM05D004460 ORTHO05D005254 6.2e-204 714.5 483 75.8
Lj3g0001995 Lotus japonicus HOM05D004460 ORTHO05D005254 1.1e-203 713.8 484 74.6
Sed0018938 Sechium edule HOM05D004460 ORTHO05D005254 1.1e-203 713.8 495 74.3
THA.LOC104799510 Tarenaya hassleriana HOM05D004460 ORTHO05D005254 1.8e-203 713.0 483 74.7
TAR624G1319 Trochodendron aralioides HOM05D004460 ORTHO05D005254 5.8e-202 708.0 405 87.7
TPR.G11973 Trifolium pratense HOM05D004460 ORTHO05D005254 1.7e-201 706.4 493 73.0
Carub.0005s1090 Capsella rubella HOM05D004460 ORTHO05D005254 2.9e-201 705.7 496 73.2
Ca_25732_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 6.5e-201 704.5 483 74.7
Thhalv10002532m.g Eutrema salsugineum HOM05D004460 ORTHO05D005254 8.4e-201 704.1 483 73.7
Aa31sc412G40 Aethionema arabicum HOM05D004460 ORTHO05D005254 1.1e-200 703.7 483 74.1
Nitab4.5_0002151g0070 Nicotiana tabacum HOM05D004460 ORTHO05D005254 1.1e-200 703.7 556 68.2
EL10Ac2g03980 Beta vulgaris HOM05D004460 ORTHO05D005254 1.4e-200 703.4 485 74.0
Os07g0270950 Oryza sativa ssp. japonica HOM05D004460 ORTHO05D005254 2.5e-200 702.6 484 74.8
Zm00001eb097230 Zea mays HOM05D004460 ORTHO05D005254 2.5e-200 702.6 484 74.6
AT3G45100 Arabidopsis thaliana HOM05D004460 ORTHO05D005254 3.2e-200 702.2 496 72.6
BcaC06g31990 Brassica carinata HOM05D004460 ORTHO05D005254 3.2e-200 702.2 483 73.9
CDE04G3212 Ceratophyllum demersum HOM05D004460 ORTHO05D005254 5.5e-200 701.4 498 71.9
AL5G23600 Arabidopsis lyrata HOM05D004460 ORTHO05D005254 9.3e-200 700.7 485 73.6
HPP92_024369 Vanilla planifolia HOM05D004460 ORTHO05D005254 2.7e-199 699.1 493 73.0
Hma1.2p1_2380F.1_g320963 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 4.6e-199 698.4 445 80.7
BraA10t45351Z Brassica rapa HOM05D004460 ORTHO05D005254 4.3e-197 691.8 483 73.3
TPR.G11585 Trifolium pratense HOM05D004460 ORTHO05D005254 5.7e-197 691.4 473 75.1
A10p33230 Brassica napus HOM05D004460 ORTHO05D005254 9.6e-197 690.6 483 73.1
C09p74140 Brassica napus HOM05D004460 ORTHO05D005254 2.1e-196 689.5 483 72.9
BolC9t60146H Brassica oleracea HOM05D004460 ORTHO05D005254 2.1e-196 689.5 483 72.9
Lsat_1_v5_gn_1_77661 Lactuca sativa HOM05D004460 ORTHO05D005254 3.7e-196 688.7 497 72.4
Medtr4g089065 Medicago truncatula HOM05D004460 ORTHO05D005254 4.8e-196 688.3 493 71.8
arahy.Tifrunner.gnm1.ann1.MW8ZKL Arachis hypogaea HOM05D004460 ORTHO05D005254 1.4e-195 686.8 491 71.7
Glyma.13G182200 Glycine max HOM05D004460 ORTHO05D005254 1.8e-195 686.4 490 72.0
MBI01_g34901_MAGBIO Magnolia biondii HOM05D004460 ORTHO05D005254 3.1e-195 685.6 495 71.9
arahy.Tifrunner.gnm1.ann1.HPBL6V Arachis hypogaea HOM05D004460 ORTHO05D005254 2.6e-194 682.6 486 71.6
Peaxi162Scf00503g00426 Petunia axillaris HOM05D004460 ORTHO05D005254 3.4e-194 682.2 485 73.0
Medtr2g095220 Medicago truncatula HOM05D004460 ORTHO05D005254 2.2e-193 679.5 476 73.5
Lalb_Chr16g0383601 Lupinus albus HOM05D004460 ORTHO05D005254 1.6e-191 673.3 488 70.9
ClCG03G013680 Citrullus lanatus HOM05D004460 ORTHO05D005254 2.7e-191 672.5 403 83.6
DCAR_003960 Daucus carota HOM05D004460 ORTHO05D005254 2.7e-191 672.5 444 78.2
Ah.10g034870 Amaranthus hybridus HOM05D004460 ORTHO05D005254 3.7e-188 662.1 485 70.9
VMungo1080G0188 Vigna mungo HOM05D004460 ORTHO05D005254 3.4e-186 655.6 410 81.0
SHI20353 Sapria himalayana HOM05D004460 ORTHO05D005254 1.0e-185 654.1 463 72.6
Oeu022026.1 Olea europaea HOM05D004460 ORTHO05D005254 1.3e-185 653.7 484 70.5
FAN16G0028 Fragaria x ananassa HOM05D004460 ORTHO05D005254 1.7e-185 653.3 494 69.0
FAN21G3501 Fragaria x ananassa HOM05D004460 ORTHO05D005254 1.7e-185 653.3 494 69.0
AUR62009232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 2.2e-185 652.9 488 69.5
Pp3c16_10880 Physcomitrium patens HOM05D004460 ORTHO05D005254 2.1e-183 646.4 490 68.6
Actinidia03889 Actinidia chinensis HOM05D004460 ORTHO05D005254 1.1e-179 634.0 492 68.3
Ca_01392_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 1.8e-179 633.3 387 82.9
Phvul.002G226400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 9.1e-179 630.9 490 66.9
Zm00001eb322240 Zea mays HOM05D004460 ORTHO05D005254 9.1e-179 630.9 391 81.3
Nitab4.5_0004436g0010 Nicotiana tabacum HOM05D004460 ORTHO05D005254 1.1e-176 624.0 476 70.4
FAN11G0550 Fragaria x ananassa HOM05D004460 ORTHO05D005254 5.5e-176 621.7 559 61.2
Mapoly0056s0054 Marchantia polymorpha HOM05D004460 ORTHO05D005254 9.4e-176 620.9 498 63.5
AUR62040232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 2.0e-173 613.2 488 65.4
SMO353G0094 Selaginella moellendorffii HOM05D004460 ORTHO05D005254 1.7e-172 610.1 487 64.3
MELO3C015670.2 Cucumis melo HOM05D004460 ORTHO05D005254 1.2e-170 604.0 474 66.2
arahy.Tifrunner.gnm1.ann1.QEP9US Arachis hypogaea HOM05D004460 ORTHO05D005254 2.0e-170 603.2 362 83.7
TAR626G0869 Trochodendron aralioides HOM05D004460 ORTHO05D005254 7.7e-170 601.3 485 68.0
Sp6g40060 Schrenkiella parvula HOM05D004460 ORTHO05D005254 1.3e-169 600.5 420 73.6
PGSC0003DMG400012127 Solanum tuberosum HOM05D004460 ORTHO05D005254 9.4e-168 594.3 476 66.0
BcaNung02130 Brassica carinata HOM05D004460 ORTHO05D005254 3.6e-167 592.4 370 80.5
Psat5g279520 Pisum sativum HOM05D004460 ORTHO05D005254 1.3e-164 583.9 410 74.4
Cc01_g10730 Coffea canephora HOM05D004460 ORTHO05D005254 2.7e-159 566.2 370 78.1
Atru.chr3.596 Acer truncatum HOM05D004460 ORTHO05D005254 5.2e-158 562.0 407 72.7
CBR_g8747 Chara braunii HOM05D004460 ORTHO05D005254 3.5e-154 549.3 483 58.8
COL.COLO4_18287 Corchorus olitorius HOM05D004460 ORTHO05D005254 2.1e-151 540.0 324 84.9
AagrBONN_evm.TU.Sc2ySwM_344.3907 Anthoceros agrestis HOM05D004460 ORTHO05D005254 1.5e-136 490.7 395 65.3
Psat7g112240 Pisum sativum HOM05D004460 ORTHO05D005254 3.1e-134 483.0 335 74.6
CARHR150840 Cardamine hirsuta HOM05D004460 ORTHO05D005254 4.1e-131 472.6 329 73.6
Prupe.6G143200 Prunus persica HOM05D004460 ORTHO05D005254 1.1e-126 458.0 357 71.1
Cre01.g006800 Chlamydomonas reinhardtii HOM05D004460 ORTHO05D005254 2.5e-120 436.8 489 49.1
arahy.Tifrunner.gnm1.ann1.RT1NLW Arachis hypogaea HOM05D004460 ORTHO05D005254 1.2e-119 434.5 282 82.3
SEGI_40785 Sequoiadendron giganteum HOM05D004460 ORTHO05D005254 1.5e-117 427.6 270 80.7
Sabra16G0128800 Salix brachista HOM05D004460 ORTHO05D005254 1.2e-114 417.9 279 76.0
MCO11G325 Micromonas commoda HOM05D004460 ORTHO05D005254 2.3e-113 413.7 516 45.2
MD03G1005200 Malus domestica HOM05D004460 ORTHO05D005254 3.6e-111 406.4 332 69.3
Peaxi162Scf00073g01829 Petunia axillaris HOM05D004460 ORTHO05D005254 1.1e-110 404.8 276 74.3
Cfa022887 Carpinus fangiana HOM05D004460 ORTHO05D005254 4.4e-109 399.4 522 44.3
BolC2t06047H Brassica oleracea HOM05D004460 ORTHO05D005254 7.6e-109 398.7 301 69.8
VMungo0251G0290 Vigna mungo HOM05D004460 ORTHO05D005254 1.2e-101 374.8 271 69.4
arahy.Tifrunner.gnm1.ann1.TK1EDX Arachis hypogaea HOM05D004460 ORTHO05D005254 5.8e-101 372.5 293 69.3
Haze_27141 Corylus avellana HOM05D004460 ORTHO05D005254 7.6e-101 372.1 470 44.3
Lj4A675G47 Lonicera japonica HOM05D004460 ORTHO05D005254 3.2e-99 366.7 225 83.6
BcaB05g21890 Brassica carinata HOM05D004460 ORTHO05D005254 2.3e-97 360.5 284 68.0
Hma1.2p1_1786F.1_g302290 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 3.1e-94 350.1 211 85.3
Lj4A665T31 Lonicera japonica HOM05D004460 ORTHO05D005254 5.1e-89 332.8 240 71.2
PRCOL_00000052 Prasinoderma coloniale HOM05D004460 ORTHO05D005254 2.4e-86 323.9 516 39.0
arahy.Tifrunner.gnm1.ann1.X9KU0H Arachis hypogaea HOM05D004460 ORTHO05D005254 5.8e-85 319.3 213 75.6
arahy.Tifrunner.gnm1.ann1.XS4KTC Arachis hypogaea HOM05D004460 ORTHO05D005254 3.5e-82 310.1 233 67.0
BraA02t04718Z Brassica rapa HOM05D004460 ORTHO05D005254 3.9e-73 280.0 220 68.6
FAN25G0085 Fragaria x ananassa HOM05D004460 ORTHO05D005254 4.8e-71 273.1 333 52.3
arahy.Tifrunner.gnm1.ann1.U8K6WM Arachis hypogaea HOM05D004460 ORTHO05D005254 2.6e-69 267.3 181 74.6
MSTRG.17732 Avicennia marina HOM05D004460 ORTHO05D005254 4.8e-63 246.5 140 82.1
C02p00470 Brassica napus HOM05D004460 ORTHO05D005254 7.7e-45 186.0 252 45.2
Cc01_g10740 Coffea canephora HOM05D004460 ORTHO05D005254 1.9e-43 181.4 109 79.8
BcaC03g13060 Brassica carinata HOM05D004460 ORTHO05D005254 2.5e-43 181.0 160 60.6
HPP92_027906 Vanilla planifolia HOM05D004460 ORTHO05D005254 7.2e-43 179.5 236 48.7
Glyma.20G052400 Glycine max HOM05D004460 ORTHO05D005254 9.4e-43 179.1 115 77.4
C02p00480 Brassica napus HOM05D004460 ORTHO05D005254 2.1e-42 177.9 158 60.8
VMungo0251G0332 Vigna mungo HOM05D004460 ORTHO05D005254 1.3e-39 168.7 188 55.3
Psat3g055640 Pisum sativum HOM05D004460 ORTHO05D005254 2.0e-29 134.8 78 79.5
Psat7g055560 Pisum sativum HOM05D004460 ORTHO05D005254 8.0e-26 122.9 150 48.7
Psat6g225840 Pisum sativum HOM05D004460 ORTHO05D005254 6.8e-25 119.8 75 70.7
CAN.G567.62 Capsicum annuum HOM05D004460 ORTHO05D005254 1.5e-24 118.6 108 61.1
MD03G1005100 Malus domestica HOM05D004460 ORTHO05D005254 8.3e-23 112.8 57 89.5
SEGI_00213 Sequoiadendron giganteum HOM05D004460 ORTHO05D005254 4.1e-22 110.5 76 64.5
Medtr2g047140 Medicago truncatula HOM05D004460 ORTHO05D005254 7.8e-21 106.3 95 57.9
Carub.0004s0823 Capsella rubella HOM05D004460 ORTHO05D005254 6.6e-20 103.2 74 73.0
HPP92_024473 Vanilla planifolia HOM05D004460 ORTHO05D005254 2.4e-14 84.7 56 78.6
FAN23G3015 Fragaria x ananassa HOM05D004460 ORTHO05D005254 1.6e-13 82.0 40 85.0
AT1G73160 Arabidopsis thaliana HOM05D002124 ORTHO05D004058 3.4e-08 64.3 159 32.1
THA.LOC104812201 Tarenaya hassleriana HOM05D002124 ORTHO05D004058 3.7e-07 60.8 157 32.5
AL2G32910 Arabidopsis lyrata HOM05D002124 ORTHO05D004058 6.4e-07 60.1 158 31.0


User provided reference genes

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