Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro21405 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 2.6e-98 362.1 187 100.0
Rhsim06G0065600 Rhododendron simsii HOM05D004812 ORTHO05D005721 3.6e-63 245.4 184 75.0
Dinv39198 Davidia involucrata HOM05D004812 ORTHO05D005721 1.7e-57 226.5 191 63.9
Dinv44924 Davidia involucrata HOM05D004812 ORTHO05D005721 4.2e-56 221.9 191 62.3
Actinidia19286 Actinidia chinensis HOM05D004812 ORTHO05D005721 2.1e-55 219.5 194 63.4
CSS0032884 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 1.0e-54 217.2 183 66.1
Prupe.1G418000 Prunus persica HOM05D004812 ORTHO05D005721 5.2e-54 214.9 193 62.2
Actinidia29636 Actinidia chinensis HOM05D004812 ORTHO05D005721 6.8e-54 214.5 176 66.5
CiPaw.08G053200 Carya illinoinensis HOM05D004812 ORTHO05D005721 4.4e-53 211.8 189 59.8
Haze_22372 Corylus avellana HOM05D004812 ORTHO05D005721 4.4e-53 211.8 189 60.8
QL09p016104 Quercus lobata HOM05D004812 ORTHO05D005721 5.7e-53 211.5 195 59.5
CiPaw.07G171000 Carya illinoinensis HOM05D004812 ORTHO05D005721 9.8e-53 210.7 186 62.4
Cfa013725 Carpinus fangiana HOM05D004812 ORTHO05D005721 1.4e-51 206.8 189 60.3
Atru.chr13.882 Acer truncatum HOM05D004812 ORTHO05D005721 3.1e-51 205.7 188 59.6
TAR381G1267 Trochodendron aralioides HOM05D004812 ORTHO05D005721 7.0e-51 204.5 176 62.5
Rhsim07G0216800 Rhododendron simsii HOM05D004812 ORTHO05D005721 1.6e-50 203.4 209 56.0
Nn6g34543 Nelumbo nucifera HOM05D004812 ORTHO05D005721 2.2e-49 199.5 171 62.6
Hma1.2p1_1230F.1_g268750 Hydrangea macrophylla HOM05D004812 ORTHO05D005721 6.5e-49 198.0 178 61.8
Cc10_g07760 Coffea canephora HOM05D004812 ORTHO05D005721 1.1e-48 197.2 172 62.2
Glyma.04G048400 Glycine max HOM05D004812 ORTHO05D005721 7.2e-48 194.5 162 62.3
TWI36G1081 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 2.7e-47 192.6 176 60.2
Lj1g0006267 Lotus japonicus HOM05D004812 ORTHO05D005721 3.6e-47 192.2 162 61.7
Manes.05G184100 Manihot esculenta HOM05D004812 ORTHO05D005721 6.1e-47 191.4 193 58.5
Gohir.D05G215800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 1.4e-46 190.3 193 55.4
Glyma.06G049600 Glycine max HOM05D004812 ORTHO05D005721 1.8e-46 189.9 162 60.5
VMungo1309G0464 Vigna mungo HOM05D004812 ORTHO05D005721 2.3e-46 189.5 162 61.7
Cpa.g.sc160.27 Carica papaya HOM05D004812 ORTHO05D005721 5.2e-46 188.3 178 59.0
Gorai.009G222500 Gossypium raimondii HOM05D004812 ORTHO05D005721 8.8e-46 187.6 193 54.9
Ciclev10002309m.g Citrus clementina HOM05D004812 ORTHO05D005721 1.2e-45 187.2 194 55.7
Lj4A77G54 Lonicera japonica HOM05D004812 ORTHO05D005721 2.6e-45 186.0 201 53.2
Lalb_Chr23g0267661 Lupinus albus HOM05D004812 ORTHO05D005721 2.6e-45 186.0 165 58.2
MBI16_g36640_MAGBIO Magnolia biondii HOM05D004812 ORTHO05D005721 2.6e-45 186.0 178 58.4
FAN15G0694 Fragaria x ananassa HOM05D004812 ORTHO05D005721 4.4e-45 185.3 194 53.6
Sed0005944 Sechium edule HOM05D004812 ORTHO05D005721 4.4e-45 185.3 177 58.2
Gohir.A05G212600 Gossypium hirsutum HOM05D004812 ORTHO05D005721 9.8e-45 184.1 193 54.4
FAN20G0597 Fragaria x ananassa HOM05D004812 ORTHO05D005721 1.3e-44 183.7 194 53.1
FAN27G1358 Fragaria x ananassa HOM05D004812 ORTHO05D005721 1.7e-44 183.3 194 53.1
Gohir.D06G024100 Gossypium hirsutum HOM05D004812 ORTHO05D005721 1.7e-44 183.3 176 58.5
Gorai.010G028600 Gossypium raimondii HOM05D004812 ORTHO05D005721 1.7e-44 183.3 176 58.5
arahy.Tifrunner.gnm1.ann1.4PX4MG Arachis hypogaea HOM05D004812 ORTHO05D005721 2.8e-44 182.6 183 54.6
FAN24G1448 Fragaria x ananassa HOM05D004812 ORTHO05D005721 6.3e-44 181.4 194 52.6
Peaxi162Scf01161g00329 Petunia axillaris HOM05D004812 ORTHO05D005721 1.1e-43 180.6 183 54.6
Aqoxy6G02958 Aquilegia oxysepala HOM05D004812 ORTHO05D005721 1.4e-43 180.3 174 55.7
MSTRG.25014 Avicennia marina HOM05D004812 ORTHO05D005721 1.4e-43 180.3 173 57.2
FvH4_2g32490 Fragaria vesca HOM05D004812 ORTHO05D005721 1.4e-43 180.3 194 51.5
Potri.005G146600 Populus trichocarpa HOM05D004812 ORTHO05D005721 1.8e-43 179.9 168 60.1
Sabra05G0117000 Salix brachista HOM05D004812 ORTHO05D005721 1.8e-43 179.9 164 59.8
MD08G1076700 Malus domestica HOM05D004812 ORTHO05D005721 2.4e-43 179.5 193 57.5
MD15G1064000 Malus domestica HOM05D004812 ORTHO05D005721 2.4e-43 179.5 197 55.3
Lsat_1_v5_gn_9_79341 Lactuca sativa HOM05D004812 ORTHO05D005721 3.1e-43 179.1 184 55.4
Gohir.A06G026800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 5.4e-43 178.3 176 57.4
ClCG08G016760 Citrullus lanatus HOM05D004812 ORTHO05D005721 7.0e-43 177.9 191 55.5
CsaV3_2G025860 Cucumis sativus L. HOM05D004812 ORTHO05D005721 7.0e-43 177.9 193 55.4
PGSC0003DMG400004945 Solanum tuberosum HOM05D004812 ORTHO05D005721 9.1e-43 177.6 187 57.2
THA.LOC104799834 Tarenaya hassleriana HOM05D004812 ORTHO05D005721 1.2e-42 177.2 190 53.2
Manes.18G050200 Manihot esculenta HOM05D004812 ORTHO05D005721 2.0e-42 176.4 190 55.3
arahy.Tifrunner.gnm1.ann1.HYM163 Arachis hypogaea HOM05D004812 ORTHO05D005721 3.5e-42 175.6 180 54.4
Duzib093G1850 Durio zibethinus HOM05D004812 ORTHO05D005721 7.7e-42 174.5 193 52.8
RcHm_v2.0_Chr6g0310161 Rosa chinensis HOM05D004812 ORTHO05D005721 1.0e-41 174.1 194 52.1
Ca_15883_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 1.7e-41 173.3 178 53.4
AL6G41350 Arabidopsis lyrata HOM05D004812 ORTHO05D005721 2.3e-41 172.9 189 51.9
Sabra02G0090600 Salix brachista HOM05D004812 ORTHO05D005721 2.3e-41 172.9 180 55.6
GSVIVG01009286001 Vitis vinifera HOM05D004812 ORTHO05D005721 2.3e-41 172.9 178 56.7
arahy.Tifrunner.gnm1.ann1.PWJU0J Arachis hypogaea HOM05D004812 ORTHO05D005721 2.9e-41 172.6 180 53.9
Thecc.08G083100 Theobroma cacao HOM05D004812 ORTHO05D005721 3.8e-41 172.2 193 51.8
MELO3C010780.2 Cucumis melo HOM05D004812 ORTHO05D005721 8.6e-41 171.0 193 54.4
Oeu048563.2 Olea europaea HOM05D004812 ORTHO05D005721 2.5e-40 169.5 194 51.0
Psat5g042400 Pisum sativum HOM05D004812 ORTHO05D005721 2.5e-40 169.5 173 53.2
MSTRG.923 Avicennia marina HOM05D004812 ORTHO05D005721 3.3e-40 169.1 195 53.8
Thhalv10028923m.g Eutrema salsugineum HOM05D004812 ORTHO05D005721 3.3e-40 169.1 190 50.5
ECA232G4694 Erigeron canadensis HOM05D000006 ORTHO05D000001 7.2e-40 167.9 162 56.2
Eucgr.F02213 Eucalyptus grandis HOM05D004812 ORTHO05D005721 7.2e-40 167.9 190 52.6
TPR.G30200 Trifolium pratense HOM05D004812 ORTHO05D005721 9.5e-40 167.5 163 57.7
Medtr3g103530 Medicago truncatula HOM05D004812 ORTHO05D005721 1.6e-39 166.8 162 54.9
Sp6g10230 Schrenkiella parvula HOM05D004812 ORTHO05D005721 2.1e-39 166.4 186 49.5
Sopen04g031020 Solanum pennellii HOM05D004812 ORTHO05D005721 2.1e-39 166.4 187 56.1
vmacro04604 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 2.1e-39 166.4 194 52.6
Duzib041G0236 Durio zibethinus HOM05D004812 ORTHO05D005721 2.8e-39 166.0 120 69.2
Potri.002G114600 Populus trichocarpa HOM05D004812 ORTHO05D005721 4.7e-39 165.2 180 54.4
Hund05266 Selenicereus undatus HOM05D004812 ORTHO05D005721 4.7e-39 165.2 191 55.5
Aa31sc619G20 Aethionema arabicum HOM05D004812 ORTHO05D005721 6.1e-39 164.9 190 50.0
TWI56G0383 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 6.1e-39 164.9 176 56.2
Solyc04g077430.4 Solanum lycopersicum HOM05D004812 ORTHO05D005721 1.0e-38 164.1 187 55.6
Duzib041G0573 Durio zibethinus HOM05D004812 ORTHO05D005721 1.8e-38 163.3 120 69.2
BcaB01g02879 Brassica carinata HOM05D004812 ORTHO05D005721 3.0e-38 162.5 186 48.4
CAN.G416.6 Capsicum annuum HOM05D004812 ORTHO05D005721 4.0e-38 162.2 186 54.3
BcaC01g04783 Brassica carinata HOM05D004812 ORTHO05D005721 5.2e-38 161.8 187 49.2
CARHR259230 Cardamine hirsuta HOM05D004812 ORTHO05D005721 1.2e-37 160.6 192 49.0
Nitab4.5_0001494g0140 Nicotiana tabacum HOM05D004812 ORTHO05D005721 1.2e-37 160.6 185 51.9
PSO675G4508 Papaver somniferum HOM05D004812 ORTHO05D005721 1.2e-37 160.6 173 52.6
A03p27930 Brassica napus HOM05D004812 ORTHO05D005721 1.5e-37 160.2 188 48.9
BolC3t15691H Brassica oleracea HOM05D004812 ORTHO05D005721 1.5e-37 160.2 188 48.9
BraA03t12006Z Brassica rapa HOM05D004812 ORTHO05D005721 1.5e-37 160.2 188 48.9
C03p33720 Brassica napus HOM05D004812 ORTHO05D005721 2.0e-37 159.8 187 48.7
CANSAT11G0724 Cannabis sativa HOM05D004812 ORTHO05D005721 2.0e-37 159.8 207 48.8
PSO541G3106 Papaver somniferum HOM05D004812 ORTHO05D005721 2.6e-37 159.5 173 52.6
Migut.N02802 Erythranthe guttata HOM05D004812 ORTHO05D005721 9.8e-37 157.5 159 54.1
SGA_v2.0_scaffold238G43884 Striga asiatica HOM05D004812 ORTHO05D005721 2.2e-36 156.4 191 50.3
HanXRQChr08g0226381 Helianthus annuus HOM05D004812 ORTHO05D005721 4.9e-36 155.2 172 50.0
Carub.0006s2656 Capsella rubella HOM05D004812 ORTHO05D005721 1.1e-35 154.1 188 47.9
Sc02g0008200 Simmondsia chinensis HOM05D004812 ORTHO05D005721 1.4e-35 153.7 114 67.5
Zm00001eb215650 Zea mays HOM05D004812 ORTHO05D005721 9.2e-35 151.0 173 48.6
Ah.05g166930 Amaranthus hybridus HOM05D004812 ORTHO05D005721 1.2e-34 150.6 174 50.6
EL10Ac1g02340 Beta vulgaris HOM05D004812 ORTHO05D005721 2.7e-34 149.4 122 63.9
Os03g0728100 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 5.9e-34 148.3 184 44.6
AT4G07990 Arabidopsis thaliana HOM05D004812 ORTHO05D005721 1.7e-33 146.7 188 46.3
Eucgr.F00104 Eucalyptus grandis HOM05D004812 ORTHO05D005721 2.3e-33 146.4 189 46.0
Ca_06989_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 3.9e-33 145.6 177 48.0
Migut.C00441 Erythranthe guttata HOM05D004812 ORTHO05D005721 1.1e-32 144.1 192 46.9
Nitab4.5_0024059g0010 Nicotiana tabacum HOM05D004812 ORTHO05D005721 1.9e-32 143.3 114 66.7
PGR031G3368 Punica granatum HOM05D004812 ORTHO05D005721 1.9e-32 143.3 180 48.9
VMungo0647G0241 Vigna mungo HOM05D004812 ORTHO05D005721 1.9e-32 143.3 175 49.1
HanXRQChr04g0110461 Helianthus annuus HOM05D004812 ORTHO05D005721 4.3e-32 142.1 185 47.6
CSS0043183 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 5.6e-32 141.7 188 49.5
Glyma.14G090500 Glycine max HOM05D004812 ORTHO05D005721 1.2e-31 140.6 186 47.3
Psat6g018520 Pisum sativum HOM05D004812 ORTHO05D005721 1.6e-31 140.2 187 47.6
Phvul.001G031700 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 3.6e-31 139.0 175 46.3
CDE02G0400 Ceratophyllum demersum HOM05D004812 ORTHO05D005721 8.9e-30 134.4 180 46.1
Lalb_Chr24g0399541 Lupinus albus HOM05D004812 ORTHO05D005721 2.0e-29 133.3 186 43.5
unitig_744.g24118 Utricularia gibba HOM05D004812 ORTHO05D005721 1.4e-27 127.1 159 47.8
TPR.G13010 Trifolium pratense HOM05D004812 ORTHO05D005721 2.4e-27 126.3 186 41.9
Lj5g0016152 Lotus japonicus HOM05D004812 ORTHO05D005721 3.2e-27 125.9 183 43.7
Medtr1g017260 Medicago truncatula HOM05D004812 ORTHO05D005721 5.4e-27 125.2 186 44.1
AUR62039348 Chenopodium quinoa HOM05D004812 ORTHO05D005721 9.2e-27 124.4 208 40.9
Oeu038874.1 Olea europaea HOM05D004812 ORTHO05D005721 7.8e-26 121.3 91 63.7
ATR0019G011 Amborella trichopoda HOM05D004812 ORTHO05D005721 1.0e-25 120.9 120 55.8
COL.COLO4_28448 Corchorus olitorius HOM05D004812 ORTHO05D005721 1.0e-25 120.9 111 57.7
arahy.Tifrunner.gnm1.ann1.FJ07HR Arachis hypogaea HOM05D004812 ORTHO05D005721 7.3e-24 114.8 74 68.9
Duzib041G0112 Durio zibethinus HOM05D004812 ORTHO05D005721 4.7e-23 112.1 78 66.7
Zm00001eb299310 Zea mays HOM05D004812 ORTHO05D005721 3.4e-21 105.9 188 39.9
HPP92_028656 Vanilla planifolia HOM05D004812 ORTHO05D005721 2.2e-20 103.2 145 45.5
PGR083G2836 Punica granatum HOM05D004812 ORTHO05D005721 8.3e-20 101.3 170 37.6
ECA247G0897 Erigeron canadensis HOM05D004812 ORTHO05D005721 1.2e-18 97.4 114 44.7
HanXRQChr08g0231951 Helianthus annuus HOM05D004812 ORTHO05D005721 1.6e-18 97.1 84 57.1
Os07g0124800 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 6.6e-17 91.7 181 36.5
Medtr3g103520 Medicago truncatula HOM05D004812 ORTHO05D005721 6.2e-15 85.1 107 47.7
Glyma.14G121300 Glycine max HOM05D004812 ORTHO05D005721 6.8e-14 81.6 62 62.9
Glyma.17G232245 Glycine max HOM05D004812 ORTHO05D005721 6.8e-14 81.6 135 44.4
Phvul.L001695 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 4.3e-08 62.4 114 42.1
AUR62034973 Chenopodium quinoa HOM05D004812 ORTHO05D005721 2.8e-07 59.7 156 36.5


User provided reference genes

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