Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 5.5e-300 1033.5 510 100.0
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 5.1e-128 462.2 510 55.1
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 9.6e-119 431.4 509 52.5
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 4.3e-111 406.0 509 48.7
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 4.3e-111 406.0 509 47.9
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 4.8e-110 402.5 508 47.8
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 4.8e-110 402.5 509 47.0
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 3.4e-108 396.4 510 48.0
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 1.6e-105 387.5 508 46.7
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 1.0e-104 384.8 509 46.0
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 1.1e-103 381.3 508 45.5
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 2.5e-103 380.2 509 45.2
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 5.6e-103 379.0 508 45.1
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 7.4e-103 378.6 524 44.8
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 7.4e-103 378.6 508 45.1
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 7.4e-103 378.6 508 46.1
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 9.6e-103 378.3 508 45.1
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 1.6e-102 377.5 508 45.5
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 2.8e-102 376.7 508 45.9
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 4.8e-102 375.9 509 45.0
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 4.8e-102 375.9 508 44.9
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 4.8e-102 375.9 509 45.0
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 1.4e-101 374.4 509 45.2
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 1.8e-101 374.0 508 44.7
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.8e-101 374.0 509 45.2
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 1.8e-101 374.0 509 45.4
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 3.1e-101 373.2 508 44.5
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea HOM05D004556 ORTHO05D005298 4.0e-101 372.9 509 44.4
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 4.0e-101 372.9 506 45.1
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 4.0e-101 372.9 507 45.0
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 1.2e-100 371.3 509 44.0
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 1.2e-100 371.3 510 44.9
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 1.5e-100 370.9 508 44.5
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea HOM05D004556 ORTHO05D005298 2.0e-100 370.5 509 44.2
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 2.6e-100 370.2 510 44.3
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 2.6e-100 370.2 509 44.6
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 3.4e-100 369.8 509 44.2
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 3.4e-100 369.8 509 45.4
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 3.4e-100 369.8 508 44.3
VMungo0540G1874 Vigna mungo HOM05D004556 ORTHO05D005298 3.4e-100 369.8 509 44.2
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 4.5e-100 369.4 509 44.4
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 7.6e-100 368.6 508 44.3
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 7.6e-100 368.6 508 44.1
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 1.0e-99 368.2 508 44.1
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 1.3e-99 367.9 508 43.9
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 1.3e-99 367.9 510 45.1
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 2.9e-99 366.7 509 45.0
Phvul.006G100100 Phaseolus vulgaris HOM05D004556 ORTHO05D005298 6.5e-99 365.5 509 43.8
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 8.4e-99 365.2 509 43.6
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 1.1e-98 364.8 509 43.6
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 2.5e-98 363.6 509 43.4
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 3.2e-98 363.2 506 44.5
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 3.2e-98 363.2 509 43.8
HanXRQChr08g0230031 Helianthus annuus HOM05D004556 ORTHO05D005298 4.2e-98 362.8 510 43.5
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 4.2e-98 362.8 509 43.6
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 1.6e-97 360.9 510 43.5
Lalb_Chr18g0045051 Lupinus albus HOM05D004556 ORTHO05D005298 2.7e-97 360.1 509 43.0
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 3.5e-97 359.8 509 43.6
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 4.6e-97 359.4 509 43.6
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 4.6e-97 359.4 508 43.5
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 4.6e-97 359.4 510 43.9
MSTRG.5093 Avicennia marina HOM05D004556 ORTHO05D005298 1.0e-96 358.2 506 43.3
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 1.0e-96 358.2 509 43.6
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 1.8e-96 357.5 510 42.2
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 1.8e-96 357.5 509 43.0
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 1.8e-96 357.5 510 43.5
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 2.3e-96 357.1 509 43.0
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 3.9e-96 356.3 509 43.2
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 5.1e-96 355.9 510 43.3
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 6.7e-96 355.5 509 43.4
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 6.7e-96 355.5 509 42.8
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 1.9e-95 354.0 509 43.8
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 1.9e-95 354.0 508 43.3
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 3.3e-95 353.2 508 42.7
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 3.3e-95 353.2 509 42.6
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 1.6e-94 350.9 509 43.2
Sabra05G0045300 Salix brachista HOM05D004556 ORTHO05D005298 2.8e-94 350.1 519 42.6
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 8.2e-94 348.6 512 43.8
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 8.2e-94 348.6 509 42.4
AUR62034008 Chenopodium quinoa HOM05D004556 ORTHO05D005298 1.8e-93 347.4 506 42.7
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 3.1e-93 346.7 510 43.3
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 3.1e-93 346.7 510 43.5
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 3.1e-93 346.7 510 43.5
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 3.1e-93 346.7 509 42.0
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 4.1e-93 346.3 512 43.2
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 4.1e-93 346.3 509 42.8
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 4.1e-93 346.3 508 42.9
Sc09g0003820 Simmondsia chinensis HOM05D004556 ORTHO05D005298 6.9e-93 345.5 509 42.8
AUR62027473 Chenopodium quinoa HOM05D004556 ORTHO05D005298 9.0e-93 345.1 508 42.3
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 2.0e-92 344.0 512 43.0
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 7.7e-92 342.0 511 43.2
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 1.0e-91 341.7 510 42.9
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 1.0e-91 341.7 512 42.8
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 1.0e-91 341.7 511 42.5
ECA232G2012 Erigeron canadensis HOM05D004556 ORTHO05D005298 1.3e-91 341.3 499 42.3
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 1.7e-91 340.9 512 42.2
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 2.2e-91 340.5 512 42.4
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 3.8e-91 339.7 512 42.8
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 1.1e-90 338.2 508 42.1
PSO210G7536 Papaver somniferum HOM05D004556 ORTHO05D005298 1.9e-90 337.4 508 41.9
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 1.6e-89 334.3 512 42.6
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 2.7e-89 333.6 508 40.7
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 6.1e-89 332.4 508 41.3
Ah.14g085270 Amaranthus hybridus HOM05D004556 ORTHO05D005298 1.0e-88 331.6 508 40.6
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 1.4e-88 331.3 506 40.9
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 1.8e-88 330.9 512 42.0
HanXRQChr11g0340961 Helianthus annuus HOM05D004556 ORTHO05D005298 2.3e-88 330.5 510 40.6
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 6.7e-88 328.9 511 41.1
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 1.5e-87 327.8 524 41.2
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 2.5e-87 327.0 511 40.7
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 5.7e-87 325.9 544 39.7
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 2.2e-86 323.9 511 40.3
MBI11_g10323_MAGBIO Magnolia biondii HOM05D004556 ORTHO05D005298 3.7e-86 323.2 514 40.1
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 8.2e-86 322.0 509 40.7
Dinv00306 Davidia involucrata HOM05D004556 ORTHO05D005298 8.2e-86 322.0 449 43.9
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 2.6e-84 317.0 508 40.6
Manes.08G132100 Manihot esculenta HOM05D004556 ORTHO05D005298 7.2e-82 308.9 454 41.4
Solyc01g097740.3 Solanum lycopersicum HOM05D004556 ORTHO05D005298 3.9e-80 303.1 467 41.3
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 9.7e-79 298.5 509 40.1
Os02g0127000 Oryza sativa ssp. japonica HOM05D004556 ORTHO05D005298 1.1e-77 295.0 503 38.0
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 2.6e-76 290.4 510 38.8
SEGI_22763 Sequoiadendron giganteum HOM05D004556 ORTHO05D005298 2.9e-75 287.0 506 36.0
SHI18353 Sapria himalayana HOM05D004556 ORTHO05D005298 6.5e-75 285.8 519 38.2
Zm00001eb210860 Zea mays HOM05D004556 ORTHO05D005298 6.5e-75 285.8 502 37.3
Gohir.A11G254300 Gossypium hirsutum HOM05D004556 ORTHO05D005298 4.7e-73 279.6 508 37.8
Zm00001eb064390 Zea mays HOM05D004556 ORTHO05D005298 3.0e-72 276.9 497 37.0
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 2.8e-70 270.4 508 36.6
Rhsim05G0161200 Rhododendron simsii HOM05D004556 ORTHO05D005298 7.7e-68 262.3 365 48.8
THA.LOC104821680 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 3.6e-65 253.4 202 63.9
Psat3g008080 Pisum sativum HOM05D004556 ORTHO05D005298 1.2e-63 248.4 202 62.4
Pp3c22_11510 Physcomitrium patens HOM05D004556 ORTHO05D005298 9.7e-63 245.4 503 34.8
Mapoly0010s0190 Marchantia polymorpha HOM05D004556 ORTHO05D005298 2.8e-62 243.8 505 34.1
SMO351G0459 Selaginella moellendorffii HOM05D004556 ORTHO05D005298 1.7e-59 234.6 497 32.6
CARHR079090 Cardamine hirsuta HOM05D004556 ORTHO05D005298 2.7e-57 227.3 387 39.8
Haze_04338 Corylus avellana HOM05D004556 ORTHO05D005298 4.0e-56 223.4 367 40.3
Lj9C665G12 Lonicera japonica HOM05D004556 ORTHO05D005298 5.4e-45 186.4 451 32.6
CBR_g2743 Chara braunii HOM05D004556 ORTHO05D005298 5.0e-43 179.9 479 30.3
AagrBONN_evm.TU.Sc2ySwM_228.926 Anthoceros agrestis HOM05D004556 ORTHO05D005298 3.4e-39 167.2 454 28.6
Migut.O00800 Erythranthe guttata HOM05D004556 ORTHO05D005298 2.3e-35 154.5 143 58.7
Actinidia30934 Actinidia chinensis HOM05D004556 ORTHO05D005298 2.8e-33 147.5 364 32.1
CARHR079080 Cardamine hirsuta HOM05D004556 ORTHO05D005298 4.4e-31 140.2 85 76.5
Lj9C665T13 Lonicera japonica HOM05D004556 ORTHO05D005298 3.7e-22 110.5 70 77.1
HanXRQChr13g0394071 Helianthus annuus HOM05D004556 ORTHO05D005298 1.2e-20 105.5 63 76.2
TAR636G2079 Trochodendron aralioides HOM05D001851 ORTHO05D002237 4.6e-20 103.6 61 75.4
BolC3t16406H Brassica oleracea HOM05D004556 ORTHO05D005298 1.3e-19 102.1 84 65.5
AagrBONN_evm.TU.Sc2ySwM_228.922 Anthoceros agrestis HOM05D004556 ORTHO05D005298 3.0e-19 100.9 72 61.1
Cre13.g579950 Chlamydomonas reinhardtii HOM05D004556 ORTHO05D005298 3.0e-19 100.9 482 21.4
PRCOL_00003723 Prasinoderma coloniale HOM05D004556 ORTHO05D005298 8.6e-19 99.4 506 22.1
Lj9C668G11 Lonicera japonica HOM05D004556 ORTHO05D005298 1.1e-18 99.0 56 78.6
Potri.013G038501 Populus trichocarpa HOM05D004556 ORTHO05D005298 5.2e-16 90.1 55 72.7
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 9.9e-15 85.9 182 32.4
RcHm_v2.0_Chr5g0051541 Rosa chinensis HOM05D004556 ORTHO05D005298 9.9e-15 85.9 162 36.4
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 2.3e-11 74.7 67 59.7
MCO08G289 Micromonas commoda HOM05D004556 ORTHO05D005298 6.6e-11 73.2 109 37.6
TPR.G31876 Trifolium pratense HOM05D004556 ORTHO05D005298 1.1e-08 65.9 69 52.2
BcaB04g19294 Brassica carinata HOM05D004556 ORTHO05D005298 9.0e-08 62.8 54 66.7
RcHm_v2.0_Chr7g0229041 Rosa chinensis HOM05D004556 ORTHO05D005298 5.8e-07 60.1 69 49.3
Sp1g08890 Schrenkiella parvula HOM05D000111 ORTHO05D013786 5.8e-07 60.1 63 55.6


User provided reference genes

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