Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro21320 Vaccinium macrocarpon HOM05D001083 ORTHO05D006562 6.5e-137 491.1 324 100.0
Rhsim06G0073600 Rhododendron simsii HOM05D001083 ORTHO05D006562 7.3e-64 248.4 196 66.8
Actinidia30816 Actinidia chinensis HOM05D001083 ORTHO05D006562 1.3e-60 237.7 187 68.4
Dinv42631 Davidia involucrata HOM05D001083 ORTHO05D006562 3.0e-57 226.5 185 67.0
Cpa.g.sc309.3 Carica papaya HOM05D001083 ORTHO05D006562 7.3e-56 221.9 183 66.1
CSS0030378 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D006562 9.6e-56 221.5 189 61.9
CSS0034477 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D006562 6.2e-55 218.8 183 65.0
CSS0045493 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D006562 1.8e-54 217.2 183 64.5
Cfa013696 Carpinus fangiana HOM05D001083 ORTHO05D001637 1.8e-54 217.2 185 64.3
Actinidia29614 Actinidia chinensis HOM05D001083 ORTHO05D006562 3.1e-54 216.5 182 64.8
Haze_22337 Corylus avellana HOM05D001083 ORTHO05D006562 6.9e-54 215.3 183 64.5
TWI36G0898 Tripterygium wilfordii HOM05D001083 ORTHO05D006562 1.5e-53 214.2 178 64.0
CiPaw.07G167500 Carya illinoinensis HOM05D001083 ORTHO05D006562 2.0e-53 213.8 183 63.4
Lj4C734G7 Lonicera japonica HOM05D001083 ORTHO05D006562 5.8e-53 212.2 192 60.4
DCAR_009571 Daucus carota HOM05D001083 ORTHO05D006562 1.7e-52 210.7 181 63.5
Dinv44842 Davidia involucrata HOM05D001083 ORTHO05D006562 2.2e-52 210.3 190 61.1
Duzib041G0775 Durio zibethinus HOM05D001083 ORTHO05D006562 6.4e-52 208.8 181 62.4
FAN08G3511 Fragaria x ananassa HOM05D001083 ORTHO05D006562 8.4e-52 208.4 179 62.6
TAR625G0337 Trochodendron aralioides HOM05D001083 ORTHO05D006562 8.4e-52 208.4 195 57.9
Nn5g29925 Nelumbo nucifera HOM05D001083 ORTHO05D001637 1.1e-51 208.0 202 56.9
Prupe.1G528400 Prunus persica HOM05D001083 ORTHO05D006562 1.4e-51 207.6 182 62.1
MD15G1382200 Malus domestica HOM05D001083 ORTHO05D006562 1.9e-51 207.2 180 62.2
PGR031G0272 Punica granatum HOM05D001083 ORTHO05D006562 3.2e-51 206.5 189 59.3
TAR381G0639 Trochodendron aralioides HOM05D001083 ORTHO05D006562 3.2e-51 206.5 196 57.7
TAR381G1629 Trochodendron aralioides HOM05D001083 ORTHO05D006562 5.4e-51 205.7 196 57.7
ClCG08G011800 Citrullus lanatus HOM05D001083 ORTHO05D006562 9.3e-51 204.9 184 60.9
Ciclev10000603m.g Citrus clementina HOM05D001083 ORTHO05D006562 9.3e-51 204.9 179 64.8
Manes.02G146400 Manihot esculenta HOM05D001083 ORTHO05D006562 1.2e-50 204.5 180 61.7
Gorai.009G230800 Gossypium raimondii HOM05D001083 ORTHO05D006562 1.6e-50 204.1 178 62.9
Sed0003733 Sechium edule HOM05D001083 ORTHO05D006562 1.6e-50 204.1 184 60.3
FAN13G1737 Fragaria x ananassa HOM05D001083 ORTHO05D006562 2.1e-50 203.8 180 62.2
Thecc.08G068600 Theobroma cacao HOM05D001083 ORTHO05D006562 2.1e-50 203.8 183 62.8
Potri.002G104000 Populus trichocarpa HOM05D001083 ORTHO05D006562 4.6e-50 202.6 180 60.0
THA.LOC104806836 Tarenaya hassleriana HOM05D001083 ORTHO05D006562 4.6e-50 202.6 187 58.3
QL09p017286 Quercus lobata HOM05D001083 ORTHO05D006562 1.0e-49 201.4 182 61.0
Manes.18G060600 Manihot esculenta HOM05D001083 ORTHO05D006562 1.7e-49 200.7 180 60.6
Gohir.A05G220900 Gossypium hirsutum HOM05D001083 ORTHO05D006562 2.3e-49 200.3 178 60.7
MD08G1194100 Malus domestica HOM05D001083 ORTHO05D006562 2.3e-49 200.3 179 60.3
TWI12G0831 Tripterygium wilfordii HOM05D001083 ORTHO05D006562 2.3e-49 200.3 178 60.7
Atru.chr13.1040 Acer truncatum HOM05D001083 ORTHO05D006562 3.0e-49 199.9 182 58.8
FAN04G2240 Fragaria x ananassa HOM05D001083 ORTHO05D006562 3.9e-49 199.5 180 61.7
MELO3C011104.2 Cucumis melo HOM05D001083 ORTHO05D006562 6.6e-49 198.7 184 60.3
Duzib116G0753 Durio zibethinus HOM05D001083 ORTHO05D006562 8.7e-49 198.4 182 59.9
Medtr5g065880 Medicago truncatula HOM05D001083 ORTHO05D006562 8.7e-49 198.4 182 58.2
Oeu016836.1 Olea europaea HOM05D001083 ORTHO05D006562 8.7e-49 198.4 182 60.4
CsaV3_2G030420 Cucumis sativus L. HOM05D001083 ORTHO05D006562 1.9e-48 197.2 184 59.8
Sabra02G0081500 Salix brachista HOM05D001083 ORTHO05D006562 2.5e-48 196.8 184 58.2
AT4G24620 Arabidopsis thaliana HOM05D001083 ORTHO05D006562 4.3e-48 196.1 179 59.2
RcHm_v2.0_Chr7g0237321 Rosa chinensis HOM05D001083 ORTHO05D006562 9.6e-48 194.9 180 60.6
HanXRQChr09g0250891 Helianthus annuus HOM05D001083 ORTHO05D006562 1.3e-47 194.5 186 57.0
Sopen00g007090 Solanum pennellii HOM05D001083 ORTHO05D006562 1.3e-47 194.5 181 58.0
THA.LOC104800044 Tarenaya hassleriana HOM05D001083 ORTHO05D006562 1.6e-47 194.1 190 57.9
VMungo0647G1287 Vigna mungo HOM05D001083 ORTHO05D006562 1.6e-47 194.1 176 60.2
Gohir.A06G032624 Gossypium hirsutum HOM05D001083 ORTHO05D006562 2.1e-47 193.7 181 57.5
Phvul.008G180200 Phaseolus vulgaris HOM05D001083 ORTHO05D006562 2.1e-47 193.7 176 60.2
Solyc04g076090.3 Solanum lycopersicum HOM05D001083 ORTHO05D006562 2.1e-47 193.7 181 58.0
arahy.Tifrunner.gnm1.ann1.R1F113 Arachis hypogaea HOM05D001083 ORTHO05D006562 2.8e-47 193.4 188 58.0
Sed0007911 Sechium edule HOM05D001083 ORTHO05D006562 2.8e-47 193.4 182 58.8
arahy.Tifrunner.gnm1.ann1.4HU4LR Arachis hypogaea HOM05D001083 ORTHO05D006562 3.6e-47 193.0 188 58.0
Lalb_Chr11g0065091 Lupinus albus HOM05D001083 ORTHO05D006562 3.6e-47 193.0 181 58.6
PSO017G5756 Papaver somniferum HOM05D001083 ORTHO05D006562 3.6e-47 193.0 199 52.8
Gohir.D06G032300 Gossypium hirsutum HOM05D001083 ORTHO05D006562 4.8e-47 192.6 179 59.8
PGSC0003DMG400012910 Solanum tuberosum HOM05D001083 ORTHO05D006562 4.8e-47 192.6 180 57.8
CAN.G1375.13 Capsicum annuum HOM05D001083 ORTHO05D006562 8.1e-47 191.8 181 60.8
FvH4_5g35680 Fragaria vesca HOM05D001083 ORTHO05D006562 8.1e-47 191.8 182 59.3
FAN18G1491 Fragaria x ananassa HOM05D001083 ORTHO05D006562 8.1e-47 191.8 182 59.3
LjContig00408g0023356 Lotus japonicus HOM05D001083 ORTHO05D006562 8.1e-47 191.8 183 56.3
AUR62027860 Chenopodium quinoa HOM05D001083 ORTHO05D006562 1.1e-46 191.4 185 60.0
Gorai.010G035600 Gossypium raimondii HOM05D001083 ORTHO05D006562 1.1e-46 191.4 179 59.2
AL7G28580 Arabidopsis lyrata HOM05D001083 ORTHO05D006562 1.4e-46 191.0 179 58.1
AUR62019023 Chenopodium quinoa HOM05D001083 ORTHO05D006562 1.8e-46 190.7 185 59.5
Glyma.04G092400 Glycine max HOM05D001083 ORTHO05D006562 1.8e-46 190.7 181 58.6
TPR.G28355 Trifolium pratense HOM05D001083 ORTHO05D006562 2.4e-46 190.3 183 54.6
CANSAT25G1784 Cannabis sativa HOM05D001083 ORTHO05D006562 3.1e-46 189.9 183 58.5
ECA232G1336 Erigeron canadensis HOM05D001083 ORTHO05D006562 5.3e-46 189.1 185 54.6
Carub.0007s1644 Capsella rubella HOM05D001083 ORTHO05D006562 6.9e-46 188.7 180 57.8
Nn1g05517 Nelumbo nucifera HOM05D001083 ORTHO05D006562 6.9e-46 188.7 199 53.3
SEGI_39500 Sequoiadendron giganteum HOM05D001083 ORTHO05D006562 6.9e-46 188.7 147 62.6
PSO170G6218 Papaver somniferum HOM05D001083 ORTHO05D006562 9.0e-46 188.3 199 52.3
Lsat_1_v5_gn_9_74041 Lactuca sativa HOM05D001083 ORTHO05D006562 1.2e-45 188.0 196 55.1
Lalb_Chr08g0242431 Lupinus albus HOM05D001083 ORTHO05D006562 1.5e-45 187.6 172 58.7
Phvul.009G143550 Phaseolus vulgaris HOM05D001083 ORTHO05D006562 1.5e-45 187.6 183 57.9
Aa31LG4G9700 Aethionema arabicum HOM05D001083 ORTHO05D006562 2.0e-45 187.2 185 57.8
Eucgr.F02133 Eucalyptus grandis HOM05D001083 ORTHO05D006562 2.0e-45 187.2 205 54.6
Thhalv10024695m.g Eutrema salsugineum HOM05D001083 ORTHO05D006562 2.0e-45 187.2 179 57.0
Psat2g066440 Pisum sativum HOM05D001083 ORTHO05D006562 2.0e-45 187.2 184 56.0
Glyma.06G094300 Glycine max HOM05D001083 ORTHO05D006562 4.5e-45 186.0 179 58.7
Nitab4.5_0000131g0420 Nicotiana tabacum HOM05D001083 ORTHO05D006562 4.5e-45 186.0 181 58.0
CARHR232010 Cardamine hirsuta HOM05D001083 ORTHO05D006562 5.8e-45 185.7 179 58.7
VMungo1309G2048 Vigna mungo HOM05D001083 ORTHO05D006562 5.8e-45 185.7 183 57.9
BcaC06g32870 Brassica carinata HOM05D001083 ORTHO05D006562 9.9e-45 184.9 182 55.5
Actinidia10373 Actinidia chinensis HOM05D001083 ORTHO05D030946 1.3e-44 184.5 163 63.2
Ah.05g170690 Amaranthus hybridus HOM05D001083 ORTHO05D006562 1.3e-44 184.5 186 58.6
Aqoxy5G01325 Aquilegia oxysepala HOM05D001083 ORTHO05D006562 1.7e-44 184.1 182 52.7
Lj1g0024653 Lotus japonicus HOM05D001083 ORTHO05D006562 1.7e-44 184.1 179 58.1
Nitab4.5_0003300g0010 Nicotiana tabacum HOM05D001083 ORTHO05D006562 1.7e-44 184.1 184 57.1
CANSAT80G2842 Cannabis sativa HOM05D001083 ORTHO05D006562 2.2e-44 183.7 182 55.5
Sc01g0001070 Simmondsia chinensis HOM05D001083 ORTHO05D006562 2.2e-44 183.7 187 54.5
Glyma.02G212600 Glycine max HOM05D001083 ORTHO05D006562 4.9e-44 182.6 177 55.4
Sp7g22610 Schrenkiella parvula HOM05D001083 ORTHO05D006562 4.9e-44 182.6 180 55.6
Hund16868 Selenicereus undatus HOM05D001083 ORTHO05D006562 1.9e-43 180.6 137 63.5
BcaNung04959 Brassica carinata HOM05D001083 ORTHO05D006562 4.2e-43 179.5 185 55.1
BolC7t45864H Brassica oleracea HOM05D001083 ORTHO05D006562 4.2e-43 179.5 183 55.7
Ca_05403_v3 Cicer arietinum L. HOM05D001083 ORTHO05D006562 4.2e-43 179.5 181 55.2
BcaC09g50847 Brassica carinata HOM05D001083 ORTHO05D006562 9.3e-43 178.3 178 56.7
C01p19950 Brassica napus HOM05D001083 ORTHO05D006562 9.3e-43 178.3 178 57.3
MBI06_g36047_MAGBIO Magnolia biondii HOM05D001083 ORTHO05D006562 9.3e-43 178.3 157 53.5
ATR0022G035 Amborella trichopoda HOM05D001083 ORTHO05D006562 1.2e-42 177.9 185 53.5
BolC1t01923H Brassica oleracea HOM05D001083 ORTHO05D006562 1.2e-42 177.9 178 57.3
CDE10G0373 Ceratophyllum demersum HOM05D001083 ORTHO05D006562 1.2e-42 177.9 185 51.9
EL10Ac1g01079 Beta vulgaris HOM05D001083 ORTHO05D006562 1.6e-42 177.6 187 56.1
A01p15970 Brassica napus HOM05D001083 ORTHO05D006562 2.1e-42 177.2 179 57.0
BraA01t01531Z Brassica rapa HOM05D001083 ORTHO05D006562 2.1e-42 177.2 179 57.0
A03p55440 Brassica napus HOM05D001083 ORTHO05D006562 6.0e-42 175.6 181 54.7
BraA03t14618Z Brassica rapa HOM05D001083 ORTHO05D006562 6.0e-42 175.6 181 54.7
MSTRG.22176 Avicennia marina HOM05D001083 ORTHO05D006562 3.0e-41 173.3 182 54.9
SGA_v2.0_scaffold28G11891 Striga asiatica HOM05D001083 ORTHO05D006562 3.0e-41 173.3 170 59.4
Peaxi162Scf00281g00319 Petunia axillaris HOM05D001083 ORTHO05D006562 6.7e-41 172.2 177 53.7
SalBow2G2226 Salvia bowleyana HOM05D001083 ORTHO05D006562 6.7e-41 172.2 134 63.4
unitig_578.g16183 Utricularia gibba HOM05D001083 ORTHO05D006562 9.6e-40 168.3 107 73.8
Migut.N02863 Erythranthe guttata HOM05D001083 ORTHO05D006562 1.3e-39 167.9 135 62.2
Os09g0465600 Oryza sativa ssp. japonica HOM05D001083 ORTHO05D006562 2.8e-39 166.8 135 60.7
Zm00001eb315420 Zea mays HOM05D001083 ORTHO05D006562 2.4e-38 163.7 120 63.3
Zm00001eb101090 Zea mays HOM05D001083 ORTHO05D006562 6.9e-38 162.2 120 63.3
SHI06377 Sapria himalayana HOM05D000002 ORTHO05D000001 1.2e-37 161.4 110 69.1
HPP92_024674 Vanilla planifolia HOM05D001083 ORTHO05D006562 2.0e-37 160.6 140 57.1
Os08g0478800 Oryza sativa ssp. japonica HOM05D001083 ORTHO05D006562 1.9e-35 154.1 178 50.0
Pp3c27_3970 Physcomitrium patens HOM05D001083 ORTHO05D006562 3.2e-35 153.3 129 58.9
SMO115G0176 Selaginella moellendorffii HOM05D001083 ORTHO05D006562 2.1e-34 150.6 101 70.3
Mapoly0057s0092 Marchantia polymorpha HOM05D001083 ORTHO05D006562 3.0e-33 146.7 184 47.3
Gohir.D05G223666 Gossypium hirsutum HOM05D001083 ORTHO05D006562 1.4e-22 111.3 67 74.6
CDE10G0945 Ceratophyllum demersum HOM05D001083 ORTHO05D006562 1.1e-19 101.7 60 71.7
Pp3c16_3900 Physcomitrium patens HOM05D001083 ORTHO05D006562 7.9e-10 68.9 65 53.8
GSVIVG01009147001 Vitis vinifera HOM05D001083 ORTHO05D006562 9.7e-08 62.0 40 67.5
Cc10_g15670 Coffea canephora HOM05D001083 ORTHO05D006562 4.1e-06 56.6 40 60.0


User provided reference genes

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