Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 0.0e+00 1516.1 774 100.0
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 0.0e+00 1087.8 777 76.6
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 6.4e-308 1060.4 753 76.2
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 1.9e-299 1032.3 753 74.2
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 1.1e-296 1023.1 753 73.4
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 3.3e-296 1021.5 753 73.0
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 1.3e-295 1019.6 751 73.4
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 6.2e-295 1017.3 753 73.2
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 3.8e-292 1008.1 792 70.6
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 1.9e-291 1005.7 753 71.8
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 3.2e-291 1005.0 753 71.8
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 1.2e-290 1003.0 753 71.7
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 1.3e-289 999.6 753 71.3
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 2.3e-289 998.8 752 71.1
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 6.6e-289 997.3 750 71.1
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 8.7e-289 996.9 753 71.6
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 1.1e-288 996.5 754 71.8
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 1.5e-288 996.1 753 71.4
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 1.9e-288 995.7 754 72.9
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 2.5e-288 995.3 753 71.4
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 5.6e-288 994.2 753 71.2
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 5.6e-288 994.2 753 71.2
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 9.6e-288 993.4 753 71.4
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 2.8e-287 991.9 750 71.1
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 2.8e-287 991.9 753 70.9
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 4.8e-287 991.1 752 71.5
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 6.2e-287 990.7 753 70.9
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 1.8e-286 989.2 753 71.2
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 2.2e-284 982.2 754 70.7
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 8.4e-284 980.3 756 70.0
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 2.1e-282 975.7 753 70.0
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 1.0e-281 973.4 753 69.5
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 1.8e-281 972.6 753 70.3
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 1.1e-280 969.9 753 70.1
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 2.5e-280 968.8 760 69.3
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 1.3e-279 966.5 753 69.5
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.3e-279 966.5 763 68.9
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 3.8e-276 954.9 754 68.7
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 1.4e-275 953.0 753 68.1
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 4.2e-275 951.4 753 68.0
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 5.1e-273 944.5 753 68.3
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 1.6e-271 939.5 820 64.6
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 6.9e-270 934.1 753 67.9
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 9.0e-270 933.7 746 67.6
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 1.5e-269 932.9 753 66.5
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 2.6e-269 932.2 751 66.8
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 7.6e-269 930.6 753 67.3
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 1.7e-268 929.5 753 67.2
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 6.5e-268 927.5 745 66.7
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 6.5e-268 927.5 759 67.2
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 1.9e-267 926.0 749 66.8
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 4.2e-267 924.9 749 66.6
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 5.5e-267 924.5 755 66.9
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 9.3e-267 923.7 754 66.8
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 9.3e-267 923.7 754 66.8
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 2.7e-266 922.2 752 66.5
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 4.6e-266 921.4 752 66.5
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 6.1e-266 921.0 766 65.4
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 6.1e-266 921.0 752 66.6
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 7.9e-266 920.6 752 66.2
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 2.3e-265 919.1 752 66.2
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 5.1e-265 917.9 780 64.5
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 9.7e-264 913.7 752 66.1
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 9.7e-264 913.7 750 65.5
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 3.7e-263 911.8 750 65.2
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 1.1e-262 910.2 752 65.7
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 4.1e-262 908.3 764 64.1
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 5.3e-262 907.9 753 65.6
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 9.0e-262 907.1 758 65.6
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 3.4e-261 905.2 753 65.2
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 4.2e-259 898.3 750 65.9
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 2.7e-258 895.6 750 65.2
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 1.1e-256 890.2 752 64.5
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 4.3e-256 888.3 750 64.8
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 1.7e-255 886.3 710 67.5
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 2.8e-255 885.6 753 64.4
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 4.1e-254 881.7 753 64.7
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 9.1e-254 880.6 752 64.4
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 1.3e-252 876.7 751 62.3
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 3.8e-252 875.2 677 70.0
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 8.8e-249 864.0 735 63.4
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 3.5e-245 852.0 753 62.8
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 1.7e-244 849.7 737 62.7
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 2.9e-244 849.0 774 61.1
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 1.8e-241 839.7 718 64.2
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 1.8e-238 829.7 750 59.9
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 2.2e-236 822.8 759 61.3
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 9.4e-235 817.4 652 67.8
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 3.0e-233 812.4 652 67.3
Psat6g025280 Pisum sativum HOM05D004954 ORTHO05D006267 1.2e-232 810.4 675 65.8
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 2.2e-231 806.2 615 70.9
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 4.1e-230 802.0 751 60.1
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 4.0e-225 785.4 751 56.7
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 3.7e-215 752.3 675 63.6
Atru.chr12.963 Acer truncatum HOM05D004954 ORTHO05D006267 2.5e-211 739.6 548 71.9
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 2.3e-204 716.5 604 64.4
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 2.5e-203 713.0 750 50.8
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 6.0e-197 691.8 693 57.9
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 1.5e-192 677.2 755 49.5
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 2.6e-184 649.8 750 48.4
Cpa.g.sc8.76 Carica papaya HOM05D004954 ORTHO05D006267 6.0e-181 638.6 361 90.3
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 6.9e-169 598.6 784 44.4
COL.COLO4_03294 Corchorus olitorius HOM05D004954 ORTHO05D006267 1.2e-168 597.8 342 90.4
CARHR183510 Cardamine hirsuta HOM05D004954 ORTHO05D006267 1.8e-164 583.9 360 82.8
GSVIVG01006234001 Vitis vinifera HOM05D004954 ORTHO05D006267 2.4e-153 547.0 590 56.6
Os07g0185700 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 3.1e-145 520.0 752 41.4
arahy.Tifrunner.gnm1.ann1.R4R8P3 Arachis hypogaea HOM05D004954 ORTHO05D006267 7.2e-142 508.8 315 81.9
Zm00001eb301770 Zea mays HOM05D004954 ORTHO05D006267 2.8e-138 496.9 752 39.9
vmacro21300 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 3.9e-132 476.5 281 90.7
Zm00001eb278340 Zea mays HOM05D004954 ORTHO05D006267 8.8e-124 448.7 499 51.3
CBR_g32699 Chara braunii HOM05D004954 ORTHO05D006267 1.8e-113 414.5 624 38.3
SMO302G0009 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 1.4e-108 398.3 733 37.8
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 7.5e-107 392.5 476 52.7
MD05G1161600 Malus domestica HOM05D004954 ORTHO05D006267 5.8e-91 339.7 560 42.9
GSVIVG01002254001 Vitis vinifera HOM05D004954 ORTHO05D006267 2.1e-72 278.1 209 72.7
COL.COLO4_03295 Corchorus olitorius HOM05D004954 ORTHO05D006267 1.2e-69 268.9 205 71.2
FAN15G2003 Fragaria x ananassa HOM05D004954 ORTHO05D006267 2.3e-63 248.1 149 87.2
SEGI_36119 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.9e-62 245.0 284 50.0
Sc17g0001690 Simmondsia chinensis HOM05D004954 ORTHO05D006267 1.9e-62 245.0 144 86.8
FAN15G2507 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.3e-58 232.3 134 85.8
SEGI_30399 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 4.3e-46 190.7 135 70.4
Cpa.g.sc8.77 Carica papaya HOM05D004954 ORTHO05D006267 1.6e-45 188.7 151 67.5
MBI18_g37244_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 4.0e-44 184.1 120 74.2
Atru.chr12.964 Acer truncatum HOM05D004954 ORTHO05D006267 5.8e-43 180.3 184 55.4
VMungo0647G2582 Vigna mungo HOM05D004954 ORTHO05D006267 4.9e-42 177.2 105 86.7
MD05G1161700 Malus domestica HOM05D004954 ORTHO05D006267 8.4e-42 176.4 156 63.5
Sabra14G0144300 Salix brachista HOM05D004954 ORTHO05D006267 1.6e-40 172.2 119 73.1
Ca_12408_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 1.3e-34 152.5 212 45.3
MD05G1160200 Malus domestica HOM05D004954 ORTHO05D006267 1.1e-33 149.4 86 88.4
VMungo0647G1109 Vigna mungo HOM05D004954 ORTHO05D006267 5.7e-30 137.1 100 74.0
Ca_12409_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 3.7e-29 134.4 74 90.5
CBR_g49514 Chara braunii HOM05D000019 ORTHO05D001702 3.6e-24 117.9 124 46.8
SEGI_32998 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 3.6e-24 117.9 84 72.6
PGSC0003DMG400008807 Solanum tuberosum HOM05D004954 ORTHO05D006267 9.7e-22 109.8 59 78.0
PGSC0003DMG400020114 Solanum tuberosum HOM05D004954 ORTHO05D006267 9.7e-22 109.8 59 78.0
MD05G1162200 Malus domestica HOM05D004954 ORTHO05D006267 3.1e-20 104.8 58 82.8
Cfa002883 Carpinus fangiana HOM05D020463 ORTHO05D022255 1.2e-19 102.8 54 90.7
VMungo0464G0043 Vigna mungo HOM05D004954 ORTHO05D006267 1.2e-19 102.8 79 65.8
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 1.2e-19 102.8 60 78.3
Ciclev10018232m.g Citrus clementina HOM05D004954 ORTHO05D006267 2.9e-18 98.2 81 60.5
QL09p053445 Quercus lobata HOM05D004954 ORTHO05D030058 6.5e-18 97.1 136 47.8
Hma1.2p1_0066F.1_g035760 Hydrangea macrophylla HOM05D004954 ORTHO05D006267 1.8e-15 89.0 56 67.9
TAR375G0464 Trochodendron aralioides HOM05D004954 ORTHO05D006267 8.2e-13 80.1 43 86.0
Glyma.09G284100 Glycine max HOM05D004954 ORTHO05D006267 1.6e-11 75.9 72 52.8
MD05G1162500 Malus domestica HOM05D004954 ORTHO05D006267 1.6e-11 75.9 80 51.2
CSS0000571 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D014145 2.6e-11 75.1 49 81.6
Medtr3g114845 Medicago truncatula HOM05D004954 ORTHO05D006267 2.5e-09 68.6 54 57.4
SEGI_31941 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 3.6e-08 64.7 36 77.8
QL09p053081 Quercus lobata HOM05D002786 ORTHO05D030058 1.0e-07 63.2 54 64.8
Hma1.2p1_0717F.1_g208260 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 6.7e-07 60.5 34 85.3
Hma1.2p1_2056F.1_g312790 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 1.2e-06 59.7 85 50.6
Hma1.2p1_0484F.1_g162800 Hydrangea macrophylla HOM05D004954 ORTHO05D008776 9.7e-06 56.6 33 81.8


User provided reference genes

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