Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1999.2 1010 100.0
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1828.1 1018 91.7
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1618.2 1010 80.1
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1597.0 1010 81.0
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1572.8 1009 79.3
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1563.9 1013 78.0
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1558.1 1016 78.1
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1555.0 1010 77.8
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1550.8 1022 76.1
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1550.0 1009 77.2
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1550.0 1008 77.5
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1537.3 1005 76.9
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1534.6 1007 76.8
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1532.3 1008 76.9
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1528.8 1010 75.9
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1528.1 1013 76.9
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1526.9 1015 76.3
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1525.4 931 83.9
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1524.6 1010 76.1
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1523.8 1014 76.0
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1512.7 1008 76.9
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1512.3 1035 74.2
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1507.3 1011 75.7
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1506.5 1011 76.7
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1506.1 1035 74.0
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1506.1 1014 73.8
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1504.6 1015 74.9
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1502.6 1008 75.1
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1501.9 1023 74.9
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1501.1 1046 73.2
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1501.1 1013 75.8
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1499.2 1001 75.8
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1498.8 1001 75.7
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1498.0 1014 73.5
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1497.6 1030 74.1
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1496.9 1014 73.4
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1496.9 1011 75.6
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1495.7 1013 75.0
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1492.6 966 78.4
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1491.1 1009 74.9
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1489.2 1045 73.6
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1488.4 1011 75.3
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1488.4 1011 74.5
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1486.5 1011 74.9
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1480.7 1010 74.9
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1476.5 1013 74.4
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1474.9 1014 74.4
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1473.4 1009 74.4
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1471.1 987 76.4
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1469.9 1010 74.9
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1465.3 1011 74.2
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1464.9 1038 73.0
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1463.7 1019 75.0
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1463.0 1054 71.7
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1462.2 1011 74.2
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1461.0 1036 73.0
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1454.1 1013 73.1
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1451.4 1017 72.9
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1451.0 1014 73.2
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1444.1 1013 73.3
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1441.8 1010 72.4
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1439.9 1013 73.1
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1439.9 1013 72.1
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1438.7 1013 72.8
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1437.6 1013 72.9
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1437.6 1013 72.8
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1436.4 1013 72.9
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1435.6 973 75.3
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1434.5 1013 72.8
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1432.5 1013 72.6
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1426.8 1012 72.5
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1426.0 1029 71.6
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1424.1 1020 71.7
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1421.0 1004 71.7
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1419.1 1009 73.7
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1416.4 1011 72.0
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1410.6 1016 71.0
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1408.3 970 74.4
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1408.3 1083 67.4
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1396.3 1024 69.2
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1396.3 986 73.4
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 0.0e+00 1392.1 858 82.6
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1380.2 1013 68.7
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1377.1 1003 71.2
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1356.7 1110 65.3
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1353.6 1015 67.7
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1350.9 1016 66.8
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1341.6 1008 68.7
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1338.2 1019 68.8
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1332.4 1013 67.0
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1330.5 1010 68.3
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1328.5 1016 66.9
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1328.2 1008 68.7
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1327.0 1014 68.8
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1324.7 966 71.5
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1317.4 979 69.5
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1311.2 1025 66.6
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1309.3 1016 67.5
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1302.3 1039 64.8
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1300.8 1015 66.5
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1295.4 954 69.9
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1283.9 988 70.3
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1282.7 1028 64.3
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1280.4 1018 65.4
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1266.1 1002 67.2
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1264.6 1036 63.7
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 0.0e+00 1255.4 1039 63.5
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1247.6 1014 65.0
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1241.1 917 69.2
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1239.9 1011 63.3
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1235.7 1010 64.1
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1227.6 1139 57.2
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1213.4 1172 55.6
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1195.6 1015 61.1
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1188.3 1012 60.1
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1184.9 1017 62.2
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 0.0e+00 1156.0 910 67.6
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1130.5 942 61.7
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1127.9 860 67.4
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1108.2 815 71.5
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 7.8e-306 1053.9 953 61.0
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 3.3e-280 968.8 873 59.9
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 4.3e-280 968.4 625 80.0
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 5.6e-280 968.0 778 66.7
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 3.1e-270 935.6 1051 49.8
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 1.2e-266 923.7 1027 49.9
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 3.4e-261 905.6 623 75.1
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 3.6e-250 869.0 980 48.6
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 5.7e-248 861.7 622 71.2
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 1.0e-244 850.9 641 69.4
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 3.2e-235 819.3 1025 46.0
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 3.7e-231 805.8 1034 44.9
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 4.5e-221 772.3 1226 40.9
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 1.1e-211 741.1 883 45.0
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 2.6e-184 650.2 360 88.3
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 6.6e-180 635.6 392 81.4
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 2.5e-163 580.5 390 76.2
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 3.7e-154 550.1 561 53.7
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 1.2e-152 545.0 433 68.4
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 5.5e-150 536.2 478 62.6
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 1.8e-140 504.6 534 54.1
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 4.9e-106 390.2 238 82.8
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 4.7e-101 373.6 259 73.0
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 3.0e-100 370.9 205 83.9
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 8.3e-98 362.8 304 63.2
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 2.3e-84 318.2 240 67.5
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 2.4e-81 308.1 236 69.5
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 2.1e-80 305.1 828 29.2
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 6.2e-77 293.5 162 84.0
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 1.1e-73 282.7 144 91.0
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 6.9e-60 236.9 173 65.9
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 2.4e-52 211.8 296 46.3
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 4.5e-51 207.6 312 45.8
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 7.9e-48 196.8 988 24.8
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 3.0e-47 194.9 148 73.0
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 3.3e-46 191.4 114 75.4
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 7.9e-40 170.2 90 80.0
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 3.0e-39 168.3 129 67.4
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 1.3e-37 162.9 150 55.3
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 1.8e-36 159.1 221 44.3
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 7.4e-30 137.1 88 68.2
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 2.4e-28 132.1 71 83.1
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 3.1e-28 131.7 142 57.7
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 1.6e-24 119.4 81 69.1
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 1.0e-23 116.7 96 60.4
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 9.7e-22 110.2 97 55.7
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 9.7e-22 110.2 97 55.7
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 6.3e-21 107.5 79 64.6
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 1.1e-20 106.7 120 50.0
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 5.7e-14 84.3 58 75.9
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 5.7e-14 84.3 78 51.3
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 3.1e-12 78.6 113 40.7
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 1.6e-11 76.3 46 78.3
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 1.1e-09 70.1 48 68.8
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 4.2e-09 68.2 65 52.3


User provided reference genes

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