Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro21226 Vaccinium macrocarpon HOM05D007703 ORTHO05D009731 1.9e-37 158.7 81 100.0
Peaxi162Scf00160g01521 Petunia axillaris HOM05D007703 ORTHO05D009731 2.3e-22 108.6 81 72.8
Nitab4.5_0002566g0010 Nicotiana tabacum HOM05D007703 ORTHO05D009731 3.3e-21 104.8 77 71.4
Duzib116G0261 Durio zibethinus HOM05D007703 ORTHO05D009731 1.2e-20 102.8 81 67.9
Nitab4.5_0000425g0040 Nicotiana tabacum HOM05D007703 ORTHO05D009731 1.6e-20 102.4 77 70.1
PGR042G2694 Punica granatum HOM05D007703 ORTHO05D009731 2.8e-20 101.7 62 85.5
GSVIVG01008983001 Vitis vinifera HOM05D007703 ORTHO05D009731 4.7e-20 100.9 81 66.7
Psat0s3920g0040 Pisum sativum HOM05D007703 ORTHO05D009731 6.2e-20 100.5 81 69.1
Manes.02G156200 Manihot esculenta HOM05D007703 ORTHO05D009731 1.4e-19 99.4 81 66.7
TAR628G1160 Trochodendron aralioides HOM05D007703 ORTHO05D009731 1.4e-19 99.4 81 67.9
CiPaw.05G232600 Carya illinoinensis HOM05D007703 ORTHO05D009731 2.3e-19 98.6 80 66.2
Gohir.D06G040000 Gossypium hirsutum HOM05D007703 ORTHO05D009731 2.3e-19 98.6 81 67.9
Gorai.010G044500 Gossypium raimondii HOM05D007703 ORTHO05D009731 2.3e-19 98.6 81 67.9
Thecc.08G112500 Theobroma cacao HOM05D007703 ORTHO05D009731 2.3e-19 98.6 81 66.7
Nn1g05271 Nelumbo nucifera HOM05D007703 ORTHO05D009731 3.1e-19 98.2 82 67.1
Atru.chr13.1271 Acer truncatum HOM05D007703 ORTHO05D009731 4.0e-19 97.8 78 65.4
Sopen12g029570 Solanum pennellii HOM05D007703 ORTHO05D009731 5.2e-19 97.4 77 68.8
MSTRG.24946 Avicennia marina HOM05D007703 ORTHO05D009731 8.9e-19 96.7 82 67.1
Sabra05G0127000 Salix brachista HOM05D007703 ORTHO05D009731 8.9e-19 96.7 81 66.7
COL.COLO4_16476 Corchorus olitorius HOM05D007703 ORTHO05D009731 1.2e-18 96.3 81 64.2
Prupe.1G511400 Prunus persica HOM05D007703 ORTHO05D009731 1.2e-18 96.3 81 64.2
Solyc12g056910.2 Solanum lycopersicum HOM05D007703 ORTHO05D009731 1.2e-18 96.3 77 68.8
TPR.G1060 Trifolium pratense HOM05D007703 ORTHO05D009731 1.5e-18 95.9 81 66.7
Gohir.A06G038300 Gossypium hirsutum HOM05D007703 ORTHO05D009731 2.0e-18 95.5 81 66.7
PGSC0003DMG400008548 Solanum tuberosum HOM05D007703 ORTHO05D009731 2.0e-18 95.5 77 66.2
QL12p035855 Quercus lobata HOM05D007703 ORTHO05D009731 2.6e-18 95.1 70 71.4
Ca_05260_v3 Cicer arietinum L. HOM05D007703 ORTHO05D009731 3.4e-18 94.7 76 71.1
Eucgr.F00482 Eucalyptus grandis HOM05D007703 ORTHO05D009731 3.4e-18 94.7 80 66.2
arahy.Tifrunner.gnm1.ann1.0YA8SQ Arachis hypogaea HOM05D007703 ORTHO05D009731 5.8e-18 94.0 67 74.6
arahy.Tifrunner.gnm1.ann1.DJB4SG Arachis hypogaea HOM05D007703 ORTHO05D009731 5.8e-18 94.0 67 74.6
CANSAT25G3270 Cannabis sativa HOM05D007703 ORTHO05D009731 5.8e-18 94.0 83 62.7
Potri.005G167200 Populus trichocarpa HOM05D007703 ORTHO05D009731 5.8e-18 94.0 81 63.0
RcHm_v2.0_Chr7g0240051 Rosa chinensis HOM05D007703 ORTHO05D009731 5.8e-18 94.0 81 64.2
Cc10_g05880 Coffea canephora HOM05D007703 ORTHO05D009731 7.5e-18 93.6 82 65.9
Hma1.2p1_0120F.1_g057000 Hydrangea macrophylla HOM05D007703 ORTHO05D009731 1.3e-17 92.8 85 58.8
Aqoxy6G00561 Aquilegia oxysepala HOM05D007703 ORTHO05D009731 1.7e-17 92.4 81 61.7
SalBow7G3803 Salvia bowleyana HOM05D007703 ORTHO05D009731 1.7e-17 92.4 77 63.6
Glyma.14G169200 Glycine max HOM05D007703 ORTHO05D009731 2.2e-17 92.0 81 64.2
AUR62022343 Chenopodium quinoa HOM05D007703 ORTHO05D009731 2.9e-17 91.7 74 66.2
Ciclev10003047m.g Citrus clementina HOM05D007703 ORTHO05D009731 2.9e-17 91.7 77 64.9
ECA232G3100 Erigeron canadensis HOM05D007703 ORTHO05D009731 2.9e-17 91.7 78 62.8
AUR62034365 Chenopodium quinoa HOM05D007703 ORTHO05D009731 3.7e-17 91.3 66 69.7
CsaV3_5G023730 Cucumis sativus L. HOM05D007703 ORTHO05D009731 3.7e-17 91.3 81 60.5
FvH4_5g38090 Fragaria vesca HOM05D007703 ORTHO05D009731 3.7e-17 91.3 81 65.4
Glyma.13G087000 Glycine max HOM05D007703 ORTHO05D009731 3.7e-17 91.3 81 64.2
Hund26653 Selenicereus undatus HOM05D007703 ORTHO05D009731 4.9e-17 90.9 83 62.7
Phvul.008G170600 Phaseolus vulgaris HOM05D007703 ORTHO05D009731 6.4e-17 90.5 81 60.5
Aa31LG7G6100 Aethionema arabicum HOM05D007703 ORTHO05D009731 8.3e-17 90.1 61 73.8
Lsat_1_v5_gn_9_44720 Lactuca sativa HOM05D007703 ORTHO05D009731 8.3e-17 90.1 77 61.0
Sc20g0003040 Simmondsia chinensis HOM05D007703 ORTHO05D009731 8.3e-17 90.1 81 63.0
MELO3C022803.2 Cucumis melo HOM05D007703 ORTHO05D009731 1.1e-16 89.7 81 63.0
Lj1g0023708 Lotus japonicus HOM05D007703 ORTHO05D009731 1.1e-16 89.7 80 61.2
Lalb_Chr04g0253231 Lupinus albus HOM05D007703 ORTHO05D009731 1.1e-16 89.7 82 62.2
Cpa.g.sc66.97 Carica papaya HOM05D007703 ORTHO05D009731 1.4e-16 89.4 73 63.0
HanXRQChr05g0144121 Helianthus annuus HOM05D007703 ORTHO05D009731 1.4e-16 89.4 58 75.9
Sed0022194 Sechium edule HOM05D007703 ORTHO05D009731 1.4e-16 89.4 81 59.3
TWI56G0976 Tripterygium wilfordii HOM05D007703 ORTHO05D009731 1.4e-16 89.4 84 63.1
FAN13G1213 Fragaria x ananassa HOM05D007703 ORTHO05D009731 1.9e-16 89.0 81 64.2
FAN04G3187 Fragaria x ananassa HOM05D007703 ORTHO05D009731 2.4e-16 88.6 81 64.2
CAN.G144.17 Capsicum annuum HOM05D007703 ORTHO05D009731 4.1e-16 87.8 53 84.9
Sed0012287 Sechium edule HOM05D007703 ORTHO05D009731 4.1e-16 87.8 82 59.8
HPP92_019111 Vanilla planifolia HOM05D007703 ORTHO05D009731 5.4e-16 87.4 73 61.6
Medtr5g061840 Medicago truncatula HOM05D007703 ORTHO05D009731 1.6e-15 85.9 54 79.6
Os03g0385301 Oryza sativa ssp. japonica HOM05D007703 ORTHO05D009731 2.0e-15 85.5 83 59.0
Zm00001eb018670 Zea mays HOM05D007703 ORTHO05D009731 3.5e-15 84.7 58 69.0
CDE10G0679 Ceratophyllum demersum HOM05D007703 ORTHO05D009731 1.7e-14 82.4 66 65.2
A09p42620 Brassica napus HOM05D007703 ORTHO05D009731 3.0e-14 81.6 77 57.1
BcaC05g26138 Brassica carinata HOM05D007703 ORTHO05D009731 6.6e-14 80.5 65 61.5
C05p21240 Brassica napus HOM05D007703 ORTHO05D009731 6.6e-14 80.5 65 61.5
BolC5t30820H Brassica oleracea HOM05D007703 ORTHO05D009731 6.6e-14 80.5 65 61.5
BraA09t39737Z Brassica rapa HOM05D007703 ORTHO05D009731 1.1e-13 79.7 77 55.8
RcHm_v2.0_Chr2g0097791 Rosa chinensis HOM05D007703 ORTHO05D009731 1.5e-13 79.3 54 70.4
Sp1g19640 Schrenkiella parvula HOM05D007703 ORTHO05D009731 1.5e-13 79.3 63 66.7
SGA_v2.0_scaffold48G18018 Striga asiatica HOM05D007703 ORTHO05D009731 1.5e-13 79.3 99 51.5
Thhalv10009245m.g Eutrema salsugineum HOM05D007703 ORTHO05D009731 1.9e-13 79.0 78 56.4
EL10Ac1g01693 Beta vulgaris HOM05D007703 ORTHO05D009731 4.3e-13 77.8 69 58.0
PSO133G0107 Papaver somniferum HOM05D007703 ORTHO05D009731 4.3e-13 77.8 86 53.5
Pp3c13_8980 Physcomitrium patens HOM05D007703 ORTHO05D009731 4.3e-13 77.8 59 64.4
AT1G22140 Arabidopsis thaliana HOM05D007703 ORTHO05D009731 5.6e-13 77.4 67 59.7
SEGI_17524 Sequoiadendron giganteum HOM05D007703 ORTHO05D009731 7.3e-13 77.0 77 51.9
Carub.0001s2169 Capsella rubella HOM05D007703 ORTHO05D009731 9.5e-13 76.6 53 69.8
BcaB07g32233 Brassica carinata HOM05D007703 ORTHO05D009731 1.2e-12 76.3 76 53.9
CARHR022490 Cardamine hirsuta HOM05D007703 ORTHO05D009731 1.2e-12 76.3 74 58.1
Mapoly0023s0123 Marchantia polymorpha HOM05D007703 ORTHO05D009731 2.8e-12 75.1 57 66.7
AL1G35580 Arabidopsis lyrata HOM05D007703 ORTHO05D009731 6.2e-12 73.9 62 61.3
Haze_00567 Corylus avellana HOM05D007703 ORTHO05D009731 1.4e-11 72.8 123 43.1
ClCG03G008950 Citrullus lanatus HOM05D007703 ORTHO05D009731 1.8e-11 72.4 123 41.5
Ah.05g168540 Amaranthus hybridus HOM05D007703 ORTHO05D009731 5.2e-11 70.9 46 76.1
ATR0564G384 Amborella trichopoda HOM05D007703 ORTHO05D009731 2.6e-10 68.6 68 55.9
MBI02_g20368_MAGBIO Magnolia biondii HOM05D007703 ORTHO05D009731 6.4e-09 63.9 46 67.4
CSS0046153 Camellia sinensis var. sinensis HOM05D007703 ORTHO05D009731 8.3e-09 63.5 35 88.6
CDE10G0176 Ceratophyllum demersum HOM05D007703 ORTHO05D009731 4.6e-07 57.8 40 75.0


User provided reference genes

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