Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro21185 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 2.0e-192 675.6 343 100.0
CSS0031611 Camellia sinensis var. sinensis HOM05D003972 ORTHO05D004609 4.8e-82 308.9 356 52.2
Actinidia20668 Actinidia chinensis HOM05D003972 ORTHO05D004609 6.5e-79 298.5 356 50.6
Gohir.A12G094100 Gossypium hirsutum HOM05D003972 ORTHO05D004609 7.0e-73 278.5 355 47.9
Gorai.008G105300 Gossypium raimondii HOM05D003972 ORTHO05D004609 7.0e-73 278.5 355 48.5
Gohir.D12G096966 Gossypium hirsutum HOM05D003972 ORTHO05D004609 9.1e-73 278.1 355 48.2
Lsat_1_v5_gn_1_107421 Lactuca sativa HOM05D003972 ORTHO05D004609 2.7e-72 276.6 353 47.3
Rhsim07G0055300 Rhododendron simsii HOM05D003972 ORTHO05D004609 3.5e-72 276.2 356 48.0
Thecc.01G411300 Theobroma cacao HOM05D003972 ORTHO05D004609 1.3e-71 274.2 355 48.7
MSTRG.5022 Avicennia marina HOM05D003972 ORTHO05D004609 2.2e-71 273.5 356 47.2
Rhsim01G0129500 Rhododendron simsii HOM05D003972 ORTHO05D004609 3.8e-71 272.7 349 51.9
Duzib138G0053 Durio zibethinus HOM05D003972 ORTHO05D004609 5.0e-71 272.3 356 47.8
HanXRQChr01g0016231 Helianthus annuus HOM05D003972 ORTHO05D004609 5.0e-71 272.3 354 47.2
Manes.10G143400 Manihot esculenta HOM05D003972 ORTHO05D004609 6.5e-71 271.9 355 48.5
Nitab4.5_0000634g0150 Nicotiana tabacum HOM05D003972 ORTHO05D004609 6.5e-71 271.9 344 48.3
PGSC0003DMG400006869 Solanum tuberosum HOM05D003972 ORTHO05D004609 8.5e-71 271.6 345 47.8
AUR62009382 Chenopodium quinoa HOM05D003972 ORTHO05D004609 1.1e-70 271.2 339 47.8
Duzib268G1708 Durio zibethinus HOM05D003972 ORTHO05D004609 1.1e-70 271.2 352 48.6
MSTRG.28071 Avicennia marina HOM05D003972 ORTHO05D004609 1.5e-70 270.8 351 47.3
Hund16627 Selenicereus undatus HOM05D003972 ORTHO05D004609 1.9e-70 270.4 351 47.9
Nn2g15387 Nelumbo nucifera HOM05D003972 ORTHO05D004609 3.2e-70 269.6 352 48.0
Prupe.2G012700 Prunus persica HOM05D003972 ORTHO05D004609 1.6e-69 267.3 360 46.1
Sopen01g034180 Solanum pennellii HOM05D003972 ORTHO05D004609 1.6e-69 267.3 345 46.7
Oeu006575.2 Olea europaea HOM05D003972 ORTHO05D004609 2.7e-69 266.5 341 49.0
PGR044G2681 Punica granatum HOM05D003972 ORTHO05D004609 2.7e-69 266.5 354 46.9
MD07G1010400 Malus domestica HOM05D003972 ORTHO05D004609 6.1e-69 265.4 361 46.8
TWI09G1021 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 6.1e-69 265.4 360 45.3
Solyc01g087120.3 Solanum lycopersicum HOM05D003972 ORTHO05D004609 8.0e-69 265.0 345 46.4
vmacro13664 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 1.4e-68 264.2 360 46.4
CAN.G1560.6 Capsicum annuum HOM05D003972 ORTHO05D004609 1.8e-68 263.8 342 46.8
Peaxi162Scf00428g00211 Petunia axillaris HOM05D003972 ORTHO05D004609 2.3e-68 263.5 341 48.1
Lj7A570T56 Lonicera japonica HOM05D003972 ORTHO05D004609 3.0e-68 263.1 364 46.4
AUR62027358 Chenopodium quinoa HOM05D003972 ORTHO05D004609 4.0e-68 262.7 333 47.1
ClCG09G004190 Citrullus lanatus HOM05D003972 ORTHO05D004609 8.8e-68 261.5 360 45.8
DCAR_006337 Daucus carota HOM05D003972 ORTHO05D004609 8.8e-68 261.5 341 48.1
Atru.chr11.2659 Acer truncatum HOM05D003972 ORTHO05D004609 1.2e-67 261.2 346 46.5
Nn7g36192 Nelumbo nucifera HOM05D003972 ORTHO05D004609 1.5e-67 260.8 353 47.0
Migut.N01593 Erythranthe guttata HOM05D003972 ORTHO05D004609 2.0e-67 260.4 356 44.9
TAR633G2347 Trochodendron aralioides HOM05D003972 ORTHO05D004609 3.4e-67 259.6 360 45.0
MD02G1312800 Malus domestica HOM05D003972 ORTHO05D004609 4.4e-67 259.2 361 45.7
Nitab4.5_0002179g0040 Nicotiana tabacum HOM05D003972 ORTHO05D004609 4.4e-67 259.2 379 44.3
Haze_03211 Corylus avellana HOM05D000015 ORTHO05D004609 1.7e-66 257.3 366 46.4
MELO3C023548.2 Cucumis melo HOM05D003972 ORTHO05D004609 1.7e-66 257.3 360 44.7
Oeu014581.1 Olea europaea HOM05D003972 ORTHO05D004609 1.7e-66 257.3 357 46.8
EL10Ac3g05626 Beta vulgaris HOM05D003972 ORTHO05D004609 3.7e-66 256.1 349 46.7
Sed0017110 Sechium edule HOM05D003972 ORTHO05D004609 4.8e-66 255.8 360 45.0
TWI73G1179 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 8.3e-66 255.0 360 44.4
ClCG10G012410 Citrullus lanatus HOM05D003972 ORTHO05D004609 1.1e-65 254.6 356 45.8
CsaV3_7G031080 Cucumis sativus L. HOM05D003972 ORTHO05D004609 1.1e-65 254.6 360 44.2
TAR633G1993 Trochodendron aralioides HOM05D003972 ORTHO05D004609 1.1e-65 254.6 360 44.4
HanXRQChr16g0524521 Helianthus annuus HOM05D003972 ORTHO05D004609 1.4e-65 254.2 352 44.6
COL.COLO4_23932 Corchorus olitorius HOM05D003972 ORTHO05D004609 7.0e-65 251.9 379 43.3
CANSAT80G0274 Cannabis sativa HOM05D003972 ORTHO05D004609 1.6e-64 250.8 360 43.9
SalBow6G4991 Salvia bowleyana HOM05D003972 ORTHO05D004609 1.6e-64 250.8 350 46.0
Oeu047573.1 Olea europaea HOM05D003972 ORTHO05D004609 2.0e-64 250.4 355 45.1
AUR62027419 Chenopodium quinoa HOM05D003972 ORTHO05D004609 2.7e-64 250.0 346 45.7
GSVIVG01032087001 Vitis vinifera HOM05D003972 ORTHO05D004609 2.7e-64 250.0 359 45.1
RcHm_v2.0_Chr1g0315911 Rosa chinensis HOM05D003972 ORTHO05D004609 3.5e-64 249.6 360 43.9
Hund14179 Selenicereus undatus HOM05D003972 ORTHO05D004609 7.7e-64 248.4 351 44.4
Ciclev10032620m.g Citrus clementina HOM05D003972 ORTHO05D004609 2.3e-63 246.9 340 44.7
ECA248G3800 Erigeron canadensis HOM05D003972 ORTHO05D004609 5.0e-63 245.7 354 44.1
PGR042G2196 Punica granatum HOM05D003972 ORTHO05D004609 8.6e-63 245.0 354 44.4
SalBow8G4898 Salvia bowleyana HOM05D003972 ORTHO05D004609 8.6e-63 245.0 346 45.7
Potri.009G061600 Populus trichocarpa HOM05D003972 ORTHO05D004609 1.1e-62 244.6 351 43.6
HanXRQChr17g0562951 Helianthus annuus HOM05D003972 ORTHO05D004609 1.5e-62 244.2 354 43.5
Sed0003633 Sechium edule HOM05D003972 ORTHO05D004609 1.5e-62 244.2 338 45.6
Sabra09G0045500 Salix brachista HOM05D003972 ORTHO05D004609 3.3e-62 243.0 351 43.3
MBI04_g36067_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 5.5e-62 242.3 362 42.5
FAN03G0639 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.6e-61 240.7 361 42.9
Lsat_1_v5_gn_1_107400 Lactuca sativa HOM05D003972 ORTHO05D004609 1.6e-61 240.7 355 43.7
FAN01G2341 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.8e-61 240.0 361 42.9
FAN06G4274 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.8e-61 240.0 360 43.1
FAN10G2592 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.8e-61 240.0 360 43.1
FvH4_7g01010 Fragaria vesca HOM05D003972 ORTHO05D004609 8.0e-61 238.4 360 42.8
Sc11g0009210 Simmondsia chinensis HOM05D003972 ORTHO05D004609 1.4e-60 237.7 300 47.3
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 3.0e-60 236.5 331 44.4
MBI01_g18885_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 4.0e-60 236.1 354 43.8
Lj9A631T54 Lonicera japonica HOM05D003972 ORTHO05D004609 5.2e-60 235.7 381 42.5
Phvul.005G021000 Phaseolus vulgaris HOM05D003972 ORTHO05D004609 6.8e-60 235.3 358 43.0
CiPaw.13G004600 Carya illinoinensis HOM05D003972 ORTHO05D004609 2.0e-59 233.8 353 43.6
VMungo1080G1024 Vigna mungo HOM05D003972 ORTHO05D004609 2.0e-59 233.8 358 43.3
Aqoxy2G00123 Aquilegia oxysepala HOM05D003972 ORTHO05D004609 4.4e-59 232.6 363 42.4
Glyma.15G273900 Glycine max HOM05D003972 ORTHO05D004609 4.4e-59 232.6 358 42.2
Glyma.08G155200 Glycine max HOM05D003972 ORTHO05D004609 7.5e-59 231.9 358 42.2
PSO384G2850 Papaver somniferum HOM05D003972 ORTHO05D004609 2.8e-58 229.9 345 42.0
PSO339G6021 Papaver somniferum HOM05D003972 ORTHO05D004609 3.7e-58 229.6 345 42.0
SGA_v2.0_scaffold24G10676 Striga asiatica HOM05D003972 ORTHO05D004609 6.3e-58 228.8 335 45.4
arahy.Tifrunner.gnm1.ann1.9I3PL7 Arachis hypogaea HOM05D003972 ORTHO05D004609 1.1e-57 228.0 358 41.1
arahy.Tifrunner.gnm1.ann1.XF35YI Arachis hypogaea HOM05D003972 ORTHO05D004609 1.1e-57 228.0 358 41.1
QL04p006659 Quercus lobata HOM05D003972 ORTHO05D004609 1.4e-57 227.6 299 46.8
SalBow5G3531 Salvia bowleyana HOM05D003972 ORTHO05D004609 3.2e-57 226.5 354 43.2
Ca_14380_v3 Cicer arietinum L. HOM05D003972 ORTHO05D004609 5.4e-57 225.7 354 42.1
HPP92_003787 Vanilla planifolia HOM05D003972 ORTHO05D004609 7.0e-57 225.3 351 39.9
Lalb_Chr08g0232821 Lupinus albus HOM05D003972 ORTHO05D004609 9.2e-57 224.9 359 42.6
Ah.06g182390 Amaranthus hybridus HOM05D003972 ORTHO05D004609 4.5e-56 222.6 365 41.1
CDE05G0778 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 7.8e-56 221.9 355 40.3
THA.LOC104809854 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 3.9e-55 219.5 354 40.7
Lalb_Chr11g0073961 Lupinus albus HOM05D003972 ORTHO05D004609 5.0e-55 219.2 358 41.3
THA.LOC104819071 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 1.1e-54 218.0 352 40.9
CDE05G2400 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 1.9e-54 217.2 353 39.9
Ah.06g182400 Amaranthus hybridus HOM05D003972 ORTHO05D004609 7.3e-54 215.3 379 38.8
Os06g0646500 Oryza sativa ssp. japonica HOM05D003972 ORTHO05D004609 9.5e-54 214.9 333 42.6
unitig_8.g3624 Utricularia gibba HOM05D003972 ORTHO05D004609 9.5e-54 214.9 354 40.1
Lj4g0010030 Lotus japonicus HOM05D003972 ORTHO05D004609 1.6e-53 214.2 348 42.8
Medtr3g028730 Medicago truncatula HOM05D003972 ORTHO05D004609 2.1e-53 213.8 354 40.4
Psat5g207400 Pisum sativum HOM05D003972 ORTHO05D004609 6.1e-53 212.2 352 41.2
TPR.G12160 Trifolium pratense HOM05D003972 ORTHO05D004609 6.1e-53 212.2 354 39.8
A03p05990 Brassica napus HOM05D003972 ORTHO05D004609 4.0e-52 209.5 354 39.5
BraA03t09936Z Brassica rapa HOM05D003972 ORTHO05D004609 6.8e-52 208.8 354 39.5
SGA_v2.0_scaffold5G02971 Striga asiatica HOM05D003972 ORTHO05D004609 6.8e-52 208.8 378 39.2
ATR0605G205 Amborella trichopoda HOM05D003972 ORTHO05D004609 8.9e-52 208.4 359 38.7
BcaC04g19115 Brassica carinata HOM05D003972 ORTHO05D004609 8.9e-52 208.4 354 39.0
BraA10t44544Z Brassica rapa HOM05D003972 ORTHO05D004609 1.5e-51 207.6 354 39.5
BolC9t59206H Brassica oleracea HOM05D003972 ORTHO05D004609 2.6e-51 206.8 354 39.3
C09p63620 Brassica napus HOM05D003972 ORTHO05D004609 3.4e-51 206.5 354 39.5
Aa31LG5G18610 Aethionema arabicum HOM05D003972 ORTHO05D004609 5.8e-51 205.7 300 42.0
BcaNung01885 Brassica carinata HOM05D003972 ORTHO05D004609 5.8e-51 205.7 354 39.3
A10p24800 Brassica napus HOM05D003972 ORTHO05D004609 9.8e-51 204.9 354 39.3
Thhalv10014516m.g Eutrema salsugineum HOM05D003972 ORTHO05D004609 1.7e-50 204.1 354 38.4
Sp6g30570 Schrenkiella parvula HOM05D003972 ORTHO05D004609 2.9e-50 203.4 354 38.7
A02p01940 Brassica napus HOM05D003972 ORTHO05D004609 3.7e-50 203.0 354 38.7
BraA02t05167Z Brassica rapa HOM05D003972 ORTHO05D004609 3.7e-50 203.0 354 38.7
BcaNung01153 Brassica carinata HOM05D003972 ORTHO05D004609 8.3e-50 201.8 354 38.7
BolC2t06557H Brassica oleracea HOM05D003972 ORTHO05D004609 8.3e-50 201.8 354 38.7
C03p07030 Brassica napus HOM05D003972 ORTHO05D004609 1.1e-49 201.4 355 38.9
BolC3t13201H Brassica oleracea HOM05D003972 ORTHO05D004609 1.1e-49 201.4 355 38.9
CARHR199980 Cardamine hirsuta HOM05D003972 ORTHO05D004609 1.1e-49 201.4 354 37.6
AL6G24070 Arabidopsis lyrata HOM05D003972 ORTHO05D004609 7.0e-49 198.7 354 37.6
Carub.0006s1161 Capsella rubella HOM05D003972 ORTHO05D004609 7.0e-49 198.7 353 37.4
BcaB01g05358 Brassica carinata HOM05D003972 ORTHO05D004609 2.0e-48 197.2 354 39.3
Aa31LG3G15250 Aethionema arabicum HOM05D003972 ORTHO05D004609 2.7e-48 196.8 370 37.0
RcHm_v2.0_Chr7g0187561 Rosa chinensis HOM05D003972 ORTHO05D004609 1.7e-47 194.1 358 36.3
AT5G13450 Arabidopsis thaliana HOM05D003972 ORTHO05D004609 3.0e-47 193.4 347 36.9
FAN18G0724 Fragaria x ananassa HOM05D003972 ORTHO05D004609 5.0e-47 192.6 352 36.9
Zm00001eb188600 Zea mays HOM05D003972 ORTHO05D004609 5.0e-47 192.6 338 38.8
Sed0014658 Sechium edule HOM05D003972 ORTHO05D004609 1.1e-46 191.4 356 38.5
FvH4_5g10590 Fragaria vesca HOM05D003972 ORTHO05D004609 4.3e-46 189.5 363 35.8
FAN13G3241 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.1e-44 184.9 363 35.3
SalBow5G0402 Salvia bowleyana HOM05D003972 ORTHO05D004609 2.3e-44 183.7 318 41.5
Cc02_g27920 Coffea canephora HOM05D003972 ORTHO05D004609 1.2e-43 181.4 282 42.6
FAN04G1554 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.6e-43 180.3 363 34.4
SHI04087 Sapria himalayana HOM05D003972 ORTHO05D004609 5.8e-43 179.1 294 38.1
SEGI_23171 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 1.7e-39 167.5 300 37.0
Eucgr.I01987 Eucalyptus grandis HOM05D003972 ORTHO05D004609 1.1e-38 164.9 345 37.4
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 2.8e-37 160.2 117 67.5
Cpa.g.sc245.17 Carica papaya HOM05D003972 ORTHO05D004609 5.2e-36 156.0 353 34.6
SEGI_22482 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 5.2e-36 156.0 300 36.3
CsaV3_3G032180 Cucumis sativus L. HOM05D003972 ORTHO05D004609 6.8e-36 155.6 96 78.1
MELO3C030924.2 Cucumis melo HOM05D003972 ORTHO05D004609 1.5e-35 154.5 133 61.7
Dinv43448 Davidia involucrata HOM05D003972 ORTHO05D004609 1.6e-32 144.4 284 37.3
Pp3c21_15430 Physcomitrium patens HOM05D003972 ORTHO05D004609 5.2e-28 129.4 294 30.3
Haze_18530 Corylus avellana HOM05D003972 ORTHO05D004609 8.9e-28 128.6 92 76.1
Pp3c21_13430 Physcomitrium patens HOM05D003972 ORTHO05D004609 1.2e-27 128.3 294 30.3
Haze_20480 Corylus avellana HOM05D003972 ORTHO05D004609 4.4e-27 126.3 232 38.8
Mapoly0003s0068 Marchantia polymorpha HOM05D003972 ORTHO05D004609 4.4e-27 126.3 299 30.1
QL04p007936 Quercus lobata HOM05D003972 ORTHO05D004609 9.9e-27 125.2 228 39.5
CBR_g17944 Chara braunii HOM05D003972 ORTHO05D004609 2.2e-26 124.0 321 28.3
Actinidia21554 Actinidia chinensis HOM05D003972 ORTHO05D004609 1.1e-25 121.7 300 34.0
BcaB06g27143 Brassica carinata HOM05D003972 ORTHO05D004609 1.1e-25 121.7 249 34.1
Cpa.g.c41216 Carica papaya HOM05D003972 ORTHO05D004609 1.6e-24 117.9 72 81.9
GSVIVG01024256001 Vitis vinifera HOM05D003972 ORTHO05D004609 6.6e-23 112.5 87 65.5
Sc10g0000050 Simmondsia chinensis HOM05D003972 ORTHO05D004609 4.3e-22 109.8 66 81.8
Rhsim01G0052900 Rhododendron simsii HOM05D003972 ORTHO05D004609 2.2e-18 97.4 70 72.9
MCO05G116 Micromonas commoda HOM05D003972 ORTHO05D004609 2.9e-18 97.1 292 24.3
Rhsim01G0081100 Rhododendron simsii HOM05D003972 ORTHO05D004609 3.8e-18 96.7 70 71.4
Rhsim02G0189700 Rhododendron simsii HOM05D003972 ORTHO05D004609 4.9e-18 96.3 92 58.7
Rhsim02G0048300 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.1e-17 95.1 70 68.6
Manes.07G005701 Manihot esculenta HOM05D003972 ORTHO05D004609 1.2e-16 91.7 114 50.9
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 2.1e-16 90.9 82 58.5
Pp3c11_16260 Physcomitrium patens HOM05D003972 ORTHO05D004609 1.0e-15 88.6 295 23.4
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 3.0e-15 87.0 66 65.2
CsaV3_3G032190 Cucumis sativus L. HOM05D003972 ORTHO05D004609 7.3e-14 82.4 108 44.4
AagrBONN_evm.TU.Sc2ySwM_344.1217 Anthoceros agrestis HOM05D003972 ORTHO05D004609 1.3e-13 81.6 264 25.0
SMO228G0064 Selaginella moellendorffii HOM05D003972 ORTHO05D004609 2.1e-13 80.9 291 22.7
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 9.0e-12 75.5 67 61.2
MELO3C030665.2 Cucumis melo HOM05D003972 ORTHO05D004609 1.7e-10 71.2 58 62.1
PRCOL_00004246 Prasinoderma coloniale HOM05D003972 ORTHO05D004609 5.4e-09 66.2 100 38.0
Cre16.g680000 Chlamydomonas reinhardtii HOM05D003972 ORTHO05D004609 1.8e-07 61.2 97 34.0


User provided reference genes

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