Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro21182 Vaccinium macrocarpon HOM05D007026 ORTHO05D008493 2.8e-152 542.0 288 100.0
Rhsim01G0130400 Rhododendron simsii HOM05D007026 ORTHO05D008493 1.2e-86 323.9 227 79.3
CSS0028033 Camellia sinensis var. sinensis HOM05D007026 ORTHO05D008493 1.7e-80 303.5 313 63.6
Hma1.2p1_0293F.1_g116330 Hydrangea macrophylla HOM05D007026 ORTHO05D008493 7.2e-71 271.6 298 58.7
Thecc.01G412700 Theobroma cacao HOM05D007026 ORTHO05D008493 2.6e-68 263.1 297 55.2
QL04p005492 Quercus lobata HOM05D007026 ORTHO05D008493 3.4e-65 252.7 297 54.2
Sabra09G0047000 Salix brachista HOM05D007026 ORTHO05D008493 2.9e-64 249.6 323 51.7
Cfa010744 Carpinus fangiana HOM05D007026 ORTHO05D008493 5.0e-64 248.8 343 50.1
Actinidia21558 Actinidia chinensis HOM05D007026 ORTHO05D008493 8.5e-64 248.1 169 80.5
Atru.chr11.2644 Acer truncatum HOM05D007026 ORTHO05D008493 5.5e-63 245.4 299 55.2
Manes.10G145400 Manihot esculenta HOM05D007026 ORTHO05D008493 5.5e-63 245.4 312 50.3
Potri.009G063700 Populus trichocarpa HOM05D007026 ORTHO05D008493 7.2e-63 245.0 330 50.9
Cc02_g27730 Coffea canephora HOM05D007026 ORTHO05D008493 1.2e-62 244.2 189 70.9
Nn2g15423 Nelumbo nucifera HOM05D007026 ORTHO05D008493 2.7e-62 243.0 316 52.2
RcHm_v2.0_Chr1g0315651 Rosa chinensis HOM05D007026 ORTHO05D008493 1.0e-61 241.1 312 52.6
Ciclev10032288m.g Citrus clementina HOM05D007026 ORTHO05D008493 1.8e-61 240.4 302 51.3
Prupe.2G010600 Prunus persica HOM05D007026 ORTHO05D008493 2.3e-61 240.0 306 51.0
MD07G1007900 Malus domestica HOM05D007026 ORTHO05D008493 6.7e-61 238.4 314 51.3
TAR623G0027 Trochodendron aralioides HOM05D007026 ORTHO05D008493 6.7e-61 238.4 301 52.5
TWI09G0295 Tripterygium wilfordii HOM05D007026 ORTHO05D008493 8.8e-61 238.0 190 67.4
Peaxi162Scf00428g00077 Petunia axillaris HOM05D007026 ORTHO05D008493 7.4e-60 235.0 283 52.7
Potri.001G269000 Populus trichocarpa HOM05D007026 ORTHO05D008493 9.7e-60 234.6 333 48.6
TAR623G1735 Trochodendron aralioides HOM05D007026 ORTHO05D008493 1.8e-58 230.3 302 51.7
Dinv43456 Davidia involucrata HOM05D007026 ORTHO05D008493 2.4e-58 229.9 254 59.4
Cpa.g.sc245.8 Carica papaya HOM05D007026 ORTHO05D008493 9.1e-58 228.0 329 47.7
arahy.Tifrunner.gnm1.ann1.VL74DI Arachis hypogaea HOM05D007026 ORTHO05D008493 1.6e-57 227.3 224 59.4
PGR044G0728 Punica granatum HOM05D007026 ORTHO05D008493 2.0e-57 226.9 295 51.2
CANSAT80G1756 Cannabis sativa HOM05D007026 ORTHO05D008493 4.5e-57 225.7 224 55.8
Dinv09365 Davidia involucrata HOM05D007026 ORTHO05D008493 4.5e-57 225.7 261 58.6
FAN03G2284 Fragaria x ananassa HOM05D007026 ORTHO05D008493 7.7e-57 224.9 324 47.5
Haze_03229 Corylus avellana HOM05D007026 ORTHO05D008493 1.0e-56 224.6 271 52.4
CsaV3_7G031200 Cucumis sativus L. HOM05D007026 ORTHO05D008493 6.5e-56 221.9 297 47.1
FAN06G1399 Fragaria x ananassa HOM05D007026 ORTHO05D008493 8.5e-56 221.5 306 50.0
FAN10G3680 Fragaria x ananassa HOM05D007026 ORTHO05D008493 1.1e-55 221.1 309 49.2
PGSC0003DMG400024551 Solanum tuberosum HOM05D007026 ORTHO05D008493 1.1e-55 221.1 288 50.0
Sopen03g034460 Solanum pennellii HOM05D007026 ORTHO05D008493 3.2e-55 219.5 292 48.3
Medtr8g036520 Medicago truncatula HOM05D007026 ORTHO05D008493 4.2e-55 219.2 293 49.1
PSO339G4493 Papaver somniferum HOM05D007026 ORTHO05D008493 7.2e-55 218.4 293 50.2
Duzib268G1513 Durio zibethinus HOM05D007026 ORTHO05D008493 9.4e-55 218.0 319 47.0
MSTRG.28077 Avicennia marina HOM05D007026 ORTHO05D008493 1.2e-54 217.6 308 49.7
MD02G1314200 Malus domestica HOM05D007026 ORTHO05D008493 2.1e-54 216.9 330 48.2
THA.LOC104826673 Tarenaya hassleriana HOM05D007026 ORTHO05D008493 2.1e-54 216.9 182 64.3
Nitab4.5_0002881g0080 Nicotiana tabacum HOM05D007026 ORTHO05D008493 2.7e-54 216.5 295 47.8
Solyc03g115460.3 Solanum lycopersicum HOM05D007026 ORTHO05D008493 2.7e-54 216.5 292 47.9
Lalb_Chr03g0033971 Lupinus albus HOM05D007026 ORTHO05D008493 3.6e-54 216.1 213 60.1
ClCG09G004280 Citrullus lanatus HOM05D007026 ORTHO05D008493 1.4e-53 214.2 295 48.5
SGA_v2.0_scaffold4G02258 Striga asiatica HOM05D007026 ORTHO05D008493 3.0e-53 213.0 289 49.5
Psat4g148320 Pisum sativum HOM05D007026 ORTHO05D008493 1.2e-52 211.1 297 48.5
Gohir.D08G166400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 5.7e-52 208.8 182 64.3
ECA248G3415 Erigeron canadensis HOM05D007026 ORTHO05D008493 7.5e-52 208.4 291 49.5
Lsat_1_v5_gn_1_108360 Lactuca sativa HOM05D007026 ORTHO05D008493 9.7e-52 208.0 288 51.0
MELO3C023538.2 Cucumis melo HOM05D007026 ORTHO05D008493 1.3e-51 207.6 291 47.1
Sc11g0009270 Simmondsia chinensis HOM05D007026 ORTHO05D008493 1.3e-51 207.6 291 47.8
DCAR_029660 Daucus carota HOM05D007026 ORTHO05D008493 2.8e-51 206.5 156 70.5
Gorai.004G173800 Gossypium raimondii HOM05D007026 ORTHO05D008493 4.8e-51 205.7 292 49.3
Migut.A00762 Erythranthe guttata HOM05D007026 ORTHO05D008493 2.0e-49 200.3 168 66.7
Migut.N01474 Erythranthe guttata HOM05D007026 ORTHO05D008493 2.7e-49 199.9 294 48.0
Actinidia20675 Actinidia chinensis HOM05D007026 ORTHO05D008493 3.5e-49 199.5 164 72.0
Lj7P569T60 Lonicera japonica HOM05D007026 ORTHO05D008493 1.7e-48 197.2 169 61.5
BcaC01g04025 Brassica carinata HOM05D007026 ORTHO05D008493 8.5e-48 194.9 280 46.4
BolC3t16854H Brassica oleracea HOM05D007026 ORTHO05D008493 8.5e-48 194.9 280 46.4
Lj3g0000564 Lotus japonicus HOM05D007026 ORTHO05D008493 2.5e-47 193.4 233 49.8
C03p45790 Brassica napus HOM05D007026 ORTHO05D008493 4.2e-47 192.6 280 46.1
Aqoxy1G00217 Aquilegia oxysepala HOM05D007026 ORTHO05D008493 5.5e-47 192.2 290 45.9
unitig_0.g1578 Utricularia gibba HOM05D007026 ORTHO05D008493 9.4e-47 191.4 152 67.1
CARHR087160 Cardamine hirsuta HOM05D007026 ORTHO05D008493 4.7e-46 189.1 172 62.2
COL.COLO4_23920 Corchorus olitorius HOM05D007026 ORTHO05D008493 6.1e-46 188.7 173 60.1
Nitab4.5_0005198g0030 Nicotiana tabacum HOM05D007026 ORTHO05D008493 6.1e-46 188.7 148 68.2
Sed0012425 Sechium edule HOM05D007026 ORTHO05D008493 1.0e-45 188.0 285 46.3
AL3G24320 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 1.8e-45 187.2 207 55.1
HanXRQChr06g0185391 Helianthus annuus HOM05D007026 ORTHO05D008493 1.5e-44 184.1 283 45.2
Carub.0003s1200 Capsella rubella HOM05D007026 ORTHO05D008493 2.0e-44 183.7 206 54.4
VMungo1127G0427 Vigna mungo HOM05D007026 ORTHO05D008493 2.6e-44 183.3 221 52.0
Glyma.13G204000 Glycine max HOM05D007026 ORTHO05D008493 3.4e-44 183.0 217 52.1
Phvul.011G212500 Phaseolus vulgaris HOM05D007026 ORTHO05D008493 4.4e-44 182.6 211 52.1
A03p37740 Brassica napus HOM05D007026 ORTHO05D008493 5.7e-44 182.2 280 46.4
BraA03t12929Z Brassica rapa HOM05D007026 ORTHO05D008493 5.7e-44 182.2 280 46.4
Thhalv10021417m.g Eutrema salsugineum HOM05D007026 ORTHO05D008493 1.7e-43 180.6 280 45.7
Sp3g10790 Schrenkiella parvula HOM05D007026 ORTHO05D008493 8.3e-43 178.3 170 60.6
AT3G12650 Arabidopsis thaliana HOM05D007026 ORTHO05D008493 1.8e-42 177.2 280 46.1
SHI26926 Sapria himalayana HOM05D007026 ORTHO05D008493 2.4e-42 176.8 144 67.4
BcaB04g18713 Brassica carinata HOM05D007026 ORTHO05D008493 3.1e-42 176.4 210 51.4
ATR0605G064 Amborella trichopoda HOM05D007026 ORTHO05D008493 9.1e-42 174.9 203 52.2
MBI01_g27619_MAGBIO Magnolia biondii HOM05D007026 ORTHO05D008493 1.6e-41 174.1 194 53.6
FvH4_7g00860 Fragaria vesca HOM05D007026 ORTHO05D008493 2.7e-41 173.3 261 48.3
A05p36850 Brassica napus HOM05D007026 ORTHO05D008493 1.1e-39 167.9 283 44.9
PSO384G4663 Papaver somniferum HOM05D007026 ORTHO05D008493 1.5e-39 167.5 250 47.6
BraA05t22486Z Brassica rapa HOM05D007026 ORTHO05D008493 2.5e-39 166.8 283 44.5
BcaB06g25527 Brassica carinata HOM05D007026 ORTHO05D008493 5.5e-39 165.6 281 43.8
Aa31LG3G20 Aethionema arabicum HOM05D007026 ORTHO05D008493 1.6e-38 164.1 282 46.5
RcHm_v2.0_Chr1g0315191 Rosa chinensis HOM05D007026 ORTHO05D008493 4.4e-36 156.0 118 68.6
RcHm_v2.0_Chr1g0315371 Rosa chinensis HOM05D007026 ORTHO05D008493 4.4e-36 156.0 120 68.3
RcHm_v2.0_Chr1g0315521 Rosa chinensis HOM05D007026 ORTHO05D008493 1.3e-35 154.5 120 68.3
RcHm_v2.0_Chr1g0315011 Rosa chinensis HOM05D007026 ORTHO05D008493 4.1e-34 149.4 120 67.5
HPP92_022795 Vanilla planifolia HOM05D007026 ORTHO05D008493 1.6e-33 147.5 265 40.0
Eucgr.J01262 Eucalyptus grandis HOM05D007026 ORTHO05D008493 1.3e-32 144.4 116 63.8
EL10Ac2g04312 Beta vulgaris HOM05D007026 ORTHO05D008493 3.8e-32 142.9 163 50.9
Gohir.A08G145400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 5.0e-32 142.5 246 43.1
BcaC05g29251 Brassica carinata HOM05D007026 ORTHO05D008493 2.0e-28 130.6 161 50.3
BolC5t34196H Brassica oleracea HOM05D007026 ORTHO05D008493 1.7e-27 127.5 116 62.1
Zm00001eb189290 Zea mays HOM05D007026 ORTHO05D008493 1.8e-26 124.0 172 44.8
Os02g0718000 Oryza sativa ssp. japonica HOM05D007026 ORTHO05D008493 9.2e-26 121.7 208 39.9
BcaB08g35591 Brassica carinata HOM05D007026 ORTHO05D008493 1.1e-23 114.8 144 51.4
TPR.G17515 Trifolium pratense HOM05D007026 ORTHO05D008493 1.2e-22 111.3 287 37.3
AUR62009374 Chenopodium quinoa HOM05D007026 ORTHO05D008493 2.9e-19 100.1 112 47.3
Nitab4.5_0004511g0060 Nicotiana tabacum HOM05D007026 ORTHO05D008493 3.5e-17 93.2 65 69.2
AL7G43500 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 5.6e-15 85.9 77 59.7
SMO147G0317 Selaginella moellendorffii HOM05D007026 ORTHO05D008493 2.3e-13 80.5 153 35.9
Aqoxy1G00218 Aquilegia oxysepala HOM05D000196 ORTHO05D000279 1.5e-12 77.8 291 29.6
Pp3c2_10070 Physcomitrium patens HOM05D007026 ORTHO05D008493 2.0e-12 77.4 169 37.9
Nitab4.5_0000052g0150 Nicotiana tabacum HOM05D007026 ORTHO05D008493 2.6e-12 77.0 86 55.8
C05p55310 Brassica napus HOM05D007026 ORTHO05D008493 4.1e-10 69.7 51 72.5
Mapoly0153s0019 Marchantia polymorpha HOM05D007026 ORTHO05D008493 2.1e-09 67.4 143 36.4
TPR.G28471 Trifolium pratense HOM05D007026 ORTHO05D008493 6.6e-08 62.4 117 44.4


User provided reference genes

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