Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro21167 Vaccinium macrocarpon HOM05D002629 ORTHO05D003221 3.0e-38 161.4 83 100.0
Rhsim01G0138900 Rhododendron simsii HOM05D002629 ORTHO05D003221 1.9e-32 142.1 80 90.0
Cpa.g.sc101.20 Carica papaya HOM05D002629 ORTHO05D003221 2.1e-31 138.7 80 88.8
Haze_02816 Corylus avellana HOM05D002629 ORTHO05D003221 8.8e-30 133.3 80 82.5
Oeu063227.1 Olea europaea HOM05D002629 ORTHO05D003221 8.8e-30 133.3 80 83.8
CDE04G1047 Ceratophyllum demersum HOM05D002629 ORTHO05D003221 2.2e-28 128.6 80 82.5
Hund27403 Selenicereus undatus HOM05D002629 ORTHO05D003221 7.0e-27 123.6 80 78.8
Ah.05g173240 Amaranthus hybridus HOM05D002629 ORTHO05D003221 2.2e-25 118.6 97 67.0
Pp3s1164_10 Physcomitrium patens HOM05D002629 ORTHO05D003221 2.1e-23 112.1 80 72.5
BcaB01g03300 Brassica carinata HOM05D002629 ORTHO05D003221 5.2e-22 107.5 82 72.0
Oeu031412.1 Olea europaea HOM05D001586 ORTHO05D001543 1.5e-21 105.9 79 74.7
Gohir.D01G171200 Gossypium hirsutum HOM05D002629 ORTHO05D003221 3.1e-19 98.2 82 62.2
Gorai.006G069100 Gossypium raimondii HOM05D002629 ORTHO05D003221 4.1e-19 97.8 82 62.2
vmacro13487 Vaccinium macrocarpon HOM05D002629 ORTHO05D003221 1.5e-16 89.4 82 61.0
vmacro21053 Vaccinium macrocarpon HOM05D002629 ORTHO05D003221 1.6e-15 85.9 47 95.7
Actinidia12648 Actinidia chinensis HOM05D002629 ORTHO05D003221 8.0e-15 83.6 47 89.4
Lj7A544T39 Lonicera japonica HOM05D002629 ORTHO05D003221 1.0e-14 83.2 120 48.3
Peaxi162Scf00030g00516 Petunia axillaris HOM05D002629 ORTHO05D003221 1.8e-14 82.4 120 45.8
arahy.Tifrunner.gnm1.ann1.NJU9W5 Arachis hypogaea HOM05D002629 ORTHO05D003221 2.3e-14 82.0 120 45.8
Actinidia40386 Actinidia chinensis HOM05D002629 ORTHO05D003221 5.2e-14 80.9 111 45.0
Cc02_g24970 Coffea canephora HOM05D002629 ORTHO05D003221 6.8e-14 80.5 47 89.4
PGR004G2363 Punica granatum HOM05D002629 ORTHO05D003221 6.8e-14 80.5 47 89.4
DCAR_025070 Daucus carota HOM05D002629 ORTHO05D003221 8.8e-14 80.1 69 59.4
Dinv44071 Davidia involucrata HOM05D002629 ORTHO05D003221 2.0e-13 79.0 45 91.1
CSS0031736 Camellia sinensis var. sinensis HOM05D002629 ORTHO05D003221 2.6e-13 78.6 47 87.2
Actinidia33500 Actinidia chinensis HOM05D002629 ORTHO05D003221 4.4e-13 77.8 47 83.0
QL04p030868 Quercus lobata HOM05D002629 ORTHO05D003221 4.4e-13 77.8 45 91.1
GSVIVG01018254001 Vitis vinifera HOM05D002629 ORTHO05D003221 4.4e-13 77.8 45 88.9
Dinv43631 Davidia involucrata HOM05D002629 ORTHO05D003221 7.5e-13 77.0 45 88.9
CiPaw.13G027700 Carya illinoinensis HOM05D002629 ORTHO05D003221 9.8e-13 76.6 45 88.9
VMungo1383G0712 Vigna mungo HOM05D002629 ORTHO05D003221 1.3e-12 76.3 45 88.9
Ciclev10018755m.g Citrus clementina HOM05D002629 ORTHO05D003221 1.7e-12 75.9 45 86.7
Eucgr.D01517 Eucalyptus grandis HOM05D002629 ORTHO05D003221 1.7e-12 75.9 45 88.9
Glyma.18G253400 Glycine max HOM05D002629 ORTHO05D003221 1.7e-12 75.9 45 88.9
Manes.01G272500 Manihot esculenta HOM05D002629 ORTHO05D003221 2.2e-12 75.5 45 86.7
CANSAT81G0002 Cannabis sativa HOM05D002629 ORTHO05D003221 3.7e-12 74.7 45 86.7
Sabra02G0106100 Salix brachista HOM05D002629 ORTHO05D003221 3.7e-12 74.7 45 84.4
Atru.chr5.154 Acer truncatum HOM05D002629 ORTHO05D003221 4.8e-12 74.3 45 84.4
CiPaw.14G021300 Carya illinoinensis HOM05D002629 ORTHO05D003221 4.8e-12 74.3 45 84.4
Potri.002G137100 Populus trichocarpa HOM05D002629 ORTHO05D003221 4.8e-12 74.3 45 84.4
THA.LOC104817192 Tarenaya hassleriana HOM05D002629 ORTHO05D003221 4.8e-12 74.3 44 90.9
Aa31LG10G14470 Aethionema arabicum HOM05D002629 ORTHO05D003221 6.3e-12 73.9 46 80.4
AL5G42590 Arabidopsis lyrata HOM05D002629 ORTHO05D003221 6.3e-12 73.9 45 82.2
arahy.Tifrunner.gnm1.ann1.Z4V8RQ Arachis hypogaea HOM05D002629 ORTHO05D003221 6.3e-12 73.9 45 86.7
COL.COLO4_12423 Corchorus olitorius HOM05D002629 ORTHO05D003221 6.3e-12 73.9 45 86.7
Thhalv10005776m.g Eutrema salsugineum HOM05D002629 ORTHO05D003221 6.3e-12 73.9 44 84.1
TPR.G12223 Trifolium pratense HOM05D002629 ORTHO05D003221 6.3e-12 73.9 45 86.7
Aa31LG1G26430 Aethionema arabicum HOM05D002629 ORTHO05D003221 8.3e-12 73.6 45 84.4
Lalb_Chr03g0040291 Lupinus albus HOM05D002629 ORTHO05D003221 8.3e-12 73.6 44 88.6
Psat3g195880 Pisum sativum HOM05D002629 ORTHO05D003221 8.3e-12 73.6 45 86.7
TAR374G0587 Trochodendron aralioides HOM05D002629 ORTHO05D003221 8.3e-12 73.6 46 84.8
ECA240G2280 Erigeron canadensis HOM05D002629 ORTHO05D003221 1.8e-11 72.4 46 80.4
MD02G1216100 Malus domestica HOM05D002629 ORTHO05D003221 1.8e-11 72.4 44 86.4
Sed0006090 Sechium edule HOM05D002629 ORTHO05D003221 1.8e-11 72.4 47 80.9
CAN.G362.8 Capsicum annuum HOM05D002629 ORTHO05D003221 2.4e-11 72.0 45 84.4
MD07G1104300 Malus domestica HOM05D002629 ORTHO05D003221 2.4e-11 72.0 44 84.1
AT3G60350 Arabidopsis thaliana HOM05D002629 ORTHO05D003221 3.1e-11 71.6 45 80.0
Potri.014G046000 Populus trichocarpa HOM05D002629 ORTHO05D003221 3.1e-11 71.6 45 82.2
Glyma.09G242200 Glycine max HOM05D002629 ORTHO05D003221 4.1e-11 71.2 45 84.4
Nn1g00881 Nelumbo nucifera HOM05D002629 ORTHO05D003221 4.1e-11 71.2 45 80.0
Medtr7g007780 Medicago truncatula HOM05D002629 ORTHO05D003221 5.4e-11 70.9 44 86.4
TWI59G0861 Tripterygium wilfordii HOM05D002629 ORTHO05D003221 5.4e-11 70.9 44 81.8
MSTRG.20699 Avicennia marina HOM05D002629 ORTHO05D003221 7.0e-11 70.5 45 80.0
CSS0010116 Camellia sinensis var. sinensis HOM05D002629 ORTHO05D003221 7.0e-11 70.5 46 78.3
Sc02g0003040 Simmondsia chinensis HOM05D002629 ORTHO05D003221 7.0e-11 70.5 45 84.4
TAR375G0449 Trochodendron aralioides HOM05D002629 ORTHO05D003221 7.0e-11 70.5 45 82.2
BcaC07g42772 Brassica carinata HOM05D002629 ORTHO05D003221 9.1e-11 70.1 51 68.6
Ca_04037_v3 Cicer arietinum L. HOM05D002629 ORTHO05D003221 9.1e-11 70.1 45 82.2
ClCG05G000420 Citrullus lanatus HOM05D002629 ORTHO05D003221 9.1e-11 70.1 47 78.7
MELO3C005980.2 Cucumis melo HOM05D002629 ORTHO05D003221 9.1e-11 70.1 47 78.7
CsaV3_3G007580 Cucumis sativus L. HOM05D002629 ORTHO05D003221 9.1e-11 70.1 47 78.7
HanXRQChr13g0423391 Helianthus annuus HOM05D002629 ORTHO05D003221 9.1e-11 70.1 46 78.3
Lsat_1_v5_gn_3_131781 Lactuca sativa HOM05D002629 ORTHO05D003221 9.1e-11 70.1 46 78.3
Nitab4.5_0003696g0020 Nicotiana tabacum HOM05D002629 ORTHO05D003221 9.1e-11 70.1 44 84.1
Os10g0563200 Oryza sativa ssp. japonica HOM05D002629 ORTHO05D003221 9.1e-11 70.1 46 78.3
SpUN0080_0050 Schrenkiella parvula HOM05D002629 ORTHO05D003221 9.1e-11 70.1 44 81.8
BcaC02g10150 Brassica carinata HOM05D002629 ORTHO05D003221 1.2e-10 69.7 43 83.7
A04p01670 Brassica napus HOM05D002629 ORTHO05D003221 1.2e-10 69.7 43 83.7
C04p32220 Brassica napus HOM05D002629 ORTHO05D003221 1.2e-10 69.7 43 83.7
BolC4t24773H Brassica oleracea HOM05D002629 ORTHO05D003221 1.2e-10 69.7 43 83.7
BraA04t15891Z Brassica rapa HOM05D002629 ORTHO05D003221 1.2e-10 69.7 43 83.7
DCAR_029753 Daucus carota HOM05D002629 ORTHO05D003221 1.2e-10 69.7 44 81.8
Gohir.A08G029600 Gossypium hirsutum HOM05D002629 ORTHO05D003221 1.2e-10 69.7 45 82.2
Gohir.D08G040400 Gossypium hirsutum HOM05D002629 ORTHO05D003221 1.2e-10 69.7 45 82.2
Lalb_Chr19g0126581 Lupinus albus HOM05D002629 ORTHO05D003221 1.2e-10 69.7 44 84.1
TWI14G0886 Tripterygium wilfordii HOM05D002629 ORTHO05D003221 1.2e-10 69.7 44 81.8
TWI14G1152 Tripterygium wilfordii HOM05D002629 ORTHO05D003221 1.2e-10 69.7 44 81.8
SalBow5G1432 Salvia bowleyana HOM05D002629 ORTHO05D003221 1.6e-10 69.3 46 76.1
ATR0057G096 Amborella trichopoda HOM05D002629 ORTHO05D003221 2.0e-10 68.9 45 75.6
Carub.0005s2710 Capsella rubella HOM05D002629 ORTHO05D003221 2.0e-10 68.9 44 79.5
FvH4_7g09880 Fragaria vesca HOM05D002629 ORTHO05D003221 2.0e-10 68.9 44 84.1
FAN03G1771 Fragaria x ananassa HOM05D002629 ORTHO05D003221 2.0e-10 68.9 44 84.1
FAN06G1336 Fragaria x ananassa HOM05D002629 ORTHO05D003221 2.0e-10 68.9 44 84.1
FAN06G2173 Fragaria x ananassa HOM05D002629 ORTHO05D003221 2.0e-10 68.9 44 84.1
RcHm_v2.0_Chr1g0347431 Rosa chinensis HOM05D002629 ORTHO05D003221 2.0e-10 68.9 44 84.1
Sed0010164 Sechium edule HOM05D002629 ORTHO05D003221 2.0e-10 68.9 47 76.6
TAR375G0872 Trochodendron aralioides HOM05D002629 ORTHO05D003221 2.0e-10 68.9 45 80.0
CARHR170670 Cardamine hirsuta HOM05D002629 ORTHO05D003221 2.7e-10 68.6 45 77.8
Migut.B01547 Erythranthe guttata HOM05D002629 ORTHO05D003221 2.7e-10 68.6 45 77.8
FAN01G1804 Fragaria x ananassa HOM05D002629 ORTHO05D003221 2.7e-10 68.6 44 81.8
FAN10G1673 Fragaria x ananassa HOM05D002629 ORTHO05D003221 2.7e-10 68.6 44 81.8
FAN10G1881 Fragaria x ananassa HOM05D002629 ORTHO05D003221 2.7e-10 68.6 44 81.8
SGA_v2.0_scaffold153G36913 Striga asiatica HOM05D002629 ORTHO05D003221 2.7e-10 68.6 80 50.0
Aqoxy3G02758 Aquilegia oxysepala HOM05D002629 ORTHO05D003221 4.5e-10 67.8 45 80.0
HPP92_014909 Vanilla planifolia HOM05D002629 ORTHO05D003221 4.5e-10 67.8 45 82.2
Zm00001eb023660 Zea mays HOM05D002629 ORTHO05D003221 5.9e-10 67.4 46 73.9
Nn6g33838 Nelumbo nucifera HOM05D002629 ORTHO05D003221 7.7e-10 67.0 42 83.3
Duzib133G0660 Durio zibethinus HOM05D002629 ORTHO05D003221 1.0e-09 66.6 45 84.4
QL04p030794 Quercus lobata HOM05D002629 ORTHO05D003221 1.0e-09 66.6 80 55.0
Prupe.2G127900 Prunus persica HOM05D002629 ORTHO05D003221 1.3e-09 66.2 40 87.5
Thhalv10001300m.g Eutrema salsugineum HOM05D002629 ORTHO05D003221 1.7e-09 65.9 47 80.9
Phvul.008G045600 Phaseolus vulgaris HOM05D002629 ORTHO05D003221 1.7e-09 65.9 45 82.2
MSTRG.4927 Avicennia marina HOM05D002629 ORTHO05D003221 2.2e-09 65.5 42 78.6
BcaB02g08173 Brassica carinata HOM05D002629 ORTHO05D003221 2.2e-09 65.5 44 81.8
AUR62013732 Chenopodium quinoa HOM05D002629 ORTHO05D003221 2.2e-09 65.5 45 77.8
AUR62023421 Chenopodium quinoa HOM05D002629 ORTHO05D003221 2.2e-09 65.5 45 77.8
Duzib138G1927 Durio zibethinus HOM05D002629 ORTHO05D003221 2.2e-09 65.5 45 82.2
Gohir.A12G096550 Gossypium hirsutum HOM05D002629 ORTHO05D003221 2.2e-09 65.5 81 51.9
Gorai.004G039300 Gossypium raimondii HOM05D002629 ORTHO05D003221 2.2e-09 65.5 46 80.4
AL4G43990 Arabidopsis lyrata HOM05D002629 ORTHO05D003221 2.9e-09 65.1 46 82.6
Manes.14G038600 Manihot esculenta HOM05D002629 ORTHO05D003221 3.8e-09 64.7 47 70.2
CARHR140140 Cardamine hirsuta HOM05D002629 ORTHO05D003221 5.0e-09 64.3 46 80.4
Sabra14G0033500 Salix brachista HOM05D002629 ORTHO05D003221 5.0e-09 64.3 44 77.3
Thecc.01G393100 Theobroma cacao HOM05D002629 ORTHO05D003221 5.0e-09 64.3 45 82.2
AT2G44900 Arabidopsis thaliana HOM05D002629 ORTHO05D003221 6.5e-09 63.9 46 80.4
GSVIVG01013967001 Vitis vinifera HOM05D002629 ORTHO05D003221 6.5e-09 63.9 47 72.3
Sp4g26970 Schrenkiella parvula HOM05D002629 ORTHO05D003221 8.5e-09 63.5 46 80.4
EL10Ac1g00777 Beta vulgaris HOM05D002629 ORTHO05D003221 1.1e-08 63.2 45 75.6
Lj1g0021466 Lotus japonicus HOM05D002629 ORTHO05D003221 1.1e-08 63.2 47 74.5
PSO782G2159 Papaver somniferum HOM05D002629 ORTHO05D003221 1.1e-08 63.2 46 76.1
Pp3c4_17860 Physcomitrium patens HOM05D002629 ORTHO05D003221 1.1e-08 63.2 52 65.4
Solyc01g090420.4 Solanum lycopersicum HOM05D002629 ORTHO05D003221 1.1e-08 63.2 42 81.0
TPR.G32620 Trifolium pratense HOM05D002629 ORTHO05D003221 1.1e-08 63.2 46 73.9
Carub.0004s2749 Capsella rubella HOM05D002629 ORTHO05D003221 1.5e-08 62.8 47 74.5
THA.LOC104802491 Tarenaya hassleriana HOM05D002629 ORTHO05D003221 1.5e-08 62.8 46 76.1
PSO063G0076 Papaver somniferum HOM05D002629 ORTHO05D003221 1.9e-08 62.4 46 76.1
CDE12G0117 Ceratophyllum demersum HOM05D002629 ORTHO05D003221 2.5e-08 62.0 42 81.0
Gohir.A08G059100 Gossypium hirsutum HOM05D002629 ORTHO05D003221 3.2e-08 61.6 47 70.2
Gohir.D08G068300 Gossypium hirsutum HOM05D002629 ORTHO05D003221 3.2e-08 61.6 47 70.2
Gorai.004G071500 Gossypium raimondii HOM05D002629 ORTHO05D003221 3.2e-08 61.6 47 70.2
BcaB06g29404 Brassica carinata HOM05D002629 ORTHO05D003221 4.2e-08 61.2 48 75.0
A04p33530 Brassica napus HOM05D002629 ORTHO05D003221 7.2e-08 60.5 44 79.5
C04p71290 Brassica napus HOM05D002629 ORTHO05D003221 7.2e-08 60.5 44 79.5
BolC4t28633H Brassica oleracea HOM05D002629 ORTHO05D003221 7.2e-08 60.5 44 79.5
BraA04t18815Z Brassica rapa HOM05D002629 ORTHO05D003221 7.2e-08 60.5 44 79.5
Migut.N01752 Erythranthe guttata HOM05D002629 ORTHO05D003221 7.2e-08 60.5 46 71.7
Actinidia12151 Actinidia chinensis HOM05D002629 ORTHO05D003221 2.1e-07 58.9 42 71.4
SEGI_03510 Sequoiadendron giganteum HOM05D002629 ORTHO05D003221 3.6e-07 58.2 44 72.7
Pp3c12_9730 Physcomitrium patens HOM05D002629 ORTHO05D003221 4.7e-07 57.8 46 67.4
Atru.chr1.908 Acer truncatum HOM05D002629 ORTHO05D003221 1.0e-06 56.6 43 76.7
AagrBONN_evm.TU.Sc2ySwM_117.2598 Anthoceros agrestis HOM05D002629 ORTHO05D003221 1.4e-06 56.2 47 59.6
Gorai.008G108200 Gossypium raimondii HOM05D002629 ORTHO05D003221 1.8e-06 55.8 81 48.1
Ciclev10004368m.g Citrus clementina HOM05D002629 ORTHO05D003221 2.3e-06 55.5 44 65.9
Sopen01g036210 Solanum pennellii HOM05D002629 ORTHO05D003221 3.0e-06 55.1 42 78.6
Nitab4.5_0003553g0060 Nicotiana tabacum HOM05D002629 ORTHO05D003221 5.2e-06 54.3 74 50.0
BcaNung06045 Brassica carinata HOM05D002629 ORTHO05D003221 6.8e-06 53.9 34 79.4
C08p35360 Brassica napus HOM05D002629 ORTHO05D003221 6.8e-06 53.9 34 79.4
BolC8t51129H Brassica oleracea HOM05D002629 ORTHO05D003221 6.8e-06 53.9 34 79.4
Sabra01G0056800 Salix brachista HOM05D002629 ORTHO05D003221 8.8e-06 53.5 40 67.5
vmacro13490 Vaccinium macrocarpon HOM05D002629 ORTHO05D003221 8.8e-06 53.5 52 59.6


User provided reference genes

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