Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro21034 Vaccinium macrocarpon HOM05D006638 ORTHO05D008246 2.9e-134 481.9 237 100.0
Rhsim09G0153300 Rhododendron simsii HOM05D005690 ORTHO05D007075 2.1e-28 130.2 91 75.8
Rhsim05G0215700 Rhododendron simsii HOM05D006638 ORTHO05D008246 1.5e-26 124.0 73 79.5
CSS0019813 Camellia sinensis var. sinensis HOM05D006638 ORTHO05D008246 1.5e-21 107.5 73 69.9
CSS0044007 Camellia sinensis var. sinensis HOM05D006638 ORTHO05D008246 5.6e-21 105.5 73 68.5
Hma1.2p1_0001F.1_g001240 Hydrangea macrophylla HOM05D006638 ORTHO05D008246 1.2e-20 104.4 81 65.4
Dinv44116 Davidia involucrata HOM05D006638 ORTHO05D008246 2.1e-20 103.6 73 68.5
Actinidia03033 Actinidia chinensis HOM05D011460 ORTHO05D010383 4.0e-19 99.4 87 62.1
QL04p037061 Quercus lobata HOM05D006638 ORTHO05D008246 4.0e-19 99.4 56 76.8
TWI23G0519 Tripterygium wilfordii HOM05D006638 ORTHO05D008246 6.8e-19 98.6 64 78.1
MD07G1114500 Malus domestica HOM05D006638 ORTHO05D008246 1.2e-18 97.8 54 79.6
RcHm_v2.0_Chr1g0349031 Rosa chinensis HOM05D006638 ORTHO05D008246 1.2e-18 97.8 55 78.2
CSS0006996 Camellia sinensis var. sinensis HOM05D006638 ORTHO05D008246 1.5e-18 97.4 73 65.8
CSS0041268 Camellia sinensis var. sinensis HOM05D006638 ORTHO05D008246 1.5e-18 97.4 73 65.8
Actinidia33482 Actinidia chinensis HOM05D006638 ORTHO05D008246 5.8e-18 95.5 53 84.9
CiPaw.14G025400 Carya illinoinensis HOM05D006638 ORTHO05D008246 1.3e-17 94.4 53 83.0
Nn2g12739 Nelumbo nucifera HOM05D006638 ORTHO05D008246 1.3e-17 94.4 73 65.8
Lj7A537T49 Lonicera japonica HOM05D006638 ORTHO05D008246 1.7e-17 94.0 86 62.8
Haze_02520 Corylus avellana HOM05D006638 ORTHO05D008246 2.9e-17 93.2 57 71.9
Prupe.2G137100 Prunus persica HOM05D006638 ORTHO05D008246 4.9e-17 92.4 54 74.1
CANSAT56G0739 Cannabis sativa HOM05D006638 ORTHO05D008246 6.4e-17 92.0 53 77.4
FvH4_7g11040 Fragaria vesca HOM05D006638 ORTHO05D008246 6.4e-17 92.0 52 78.8
FAN06G4764 Fragaria x ananassa HOM05D006638 ORTHO05D008246 6.4e-17 92.0 52 78.8
FAN10G1288 Fragaria x ananassa HOM05D006638 ORTHO05D008246 6.4e-17 92.0 52 78.8
FAN10G2039 Fragaria x ananassa HOM05D006638 ORTHO05D008246 6.4e-17 92.0 52 78.8
TAR636G0703 Trochodendron aralioides HOM05D006638 ORTHO05D008246 1.1e-16 91.3 93 53.8
FAN03G2254 Fragaria x ananassa HOM05D006638 ORTHO05D008246 2.4e-16 90.1 52 76.9
Lj3g0022109 Lotus japonicus HOM05D006638 ORTHO05D008246 3.2e-16 89.7 70 57.1
Glyma.03G033200 Glycine max HOM05D006638 ORTHO05D008246 4.2e-16 89.4 67 58.2
Aqoxy7G00747 Aquilegia oxysepala HOM05D006638 ORTHO05D008246 5.4e-16 89.0 56 67.9
ClCG05G000210 Citrullus lanatus HOM05D006638 ORTHO05D008246 5.4e-16 89.0 75 60.0
Thhalv10008640m.g Eutrema salsugineum HOM05D006638 ORTHO05D008246 7.1e-16 88.6 74 58.1
Hund17047 Selenicereus undatus HOM05D006638 ORTHO05D008246 7.1e-16 88.6 45 84.4
GSVIVG01018156001 Vitis vinifera HOM05D006638 ORTHO05D008246 7.1e-16 88.6 70 62.9
Dinv11796 Davidia involucrata HOM05D000336 ORTHO05D002705 9.3e-16 88.2 99 54.5
Lalb_Chr07g0190301 Lupinus albus HOM05D006638 ORTHO05D008246 1.2e-15 87.8 53 69.8
SalBow1G6174 Salvia bowleyana HOM05D006638 ORTHO05D008246 1.2e-15 87.8 65 66.2
THA.LOC104809455 Tarenaya hassleriana HOM05D006638 ORTHO05D008246 1.2e-15 87.8 70 62.9
Aa31LG1G2420 Aethionema arabicum HOM05D006638 ORTHO05D008246 2.1e-15 87.0 87 50.6
Cpa.g.sc49.148 Carica papaya HOM05D006638 ORTHO05D008246 2.1e-15 87.0 86 53.5
Manes.17G011000 Manihot esculenta HOM05D006638 ORTHO05D008246 2.1e-15 87.0 62 66.1
Sp1g10860 Schrenkiella parvula HOM05D006638 ORTHO05D008246 2.1e-15 87.0 80 53.8
PGSC0003DMG400025975 Solanum tuberosum HOM05D006638 ORTHO05D008246 2.1e-15 87.0 63 65.1
Nitab4.5_0000859g0190 Nicotiana tabacum HOM05D006638 ORTHO05D008246 3.5e-15 86.3 57 64.9
Solyc01g090880.3 Solanum lycopersicum HOM05D006638 ORTHO05D008246 3.5e-15 86.3 64 64.1
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 3.5e-15 86.3 46 93.5
Sabra01G0171300 Salix brachista HOM05D006638 ORTHO05D008246 4.6e-15 85.9 71 60.6
VMungo0331G0589 Vigna mungo HOM05D006638 ORTHO05D008246 4.6e-15 85.9 52 67.3
AL1G23530 Arabidopsis lyrata HOM05D006638 ORTHO05D008246 6.0e-15 85.5 83 54.2
COL.COLO4_12484 Corchorus olitorius HOM05D006638 ORTHO05D008246 6.0e-15 85.5 55 72.7
HanXRQChr12g0384211 Helianthus annuus HOM05D006638 ORTHO05D008246 6.0e-15 85.5 80 56.2
TAR629G0886 Trochodendron aralioides HOM05D006638 ORTHO05D008246 6.0e-15 85.5 93 51.6
vmacro21896 Vaccinium macrocarpon HOM05D000590 ORTHO05D009145 6.0e-15 85.5 57 75.4
Atru.BG.68.p Acer truncatum HOM05D006638 ORTHO05D008246 7.8e-15 85.1 48 81.2
Phvul.010G071600 Phaseolus vulgaris HOM05D006638 ORTHO05D008246 7.8e-15 85.1 66 57.6
Potri.004G225600 Populus trichocarpa HOM05D006638 ORTHO05D008246 7.8e-15 85.1 54 72.2
Ca_19858_v3 Cicer arietinum L. HOM05D006638 ORTHO05D008246 1.0e-14 84.7 49 75.5
DCAR_029874 Daucus carota HOM05D006638 ORTHO05D008246 1.0e-14 84.7 93 49.5
vmacro03716 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 1.0e-14 84.7 46 91.3
Medtr2g064700 Medicago truncatula HOM05D006638 ORTHO05D008246 1.3e-14 84.3 51 72.5
Psat0s3685g0120 Pisum sativum HOM05D006638 ORTHO05D008246 1.3e-14 84.3 50 72.0
Sopen01g036620 Solanum pennellii HOM05D006638 ORTHO05D008246 1.3e-14 84.3 64 62.5
Atru.chr5.234 Acer truncatum HOM05D006638 ORTHO05D008246 1.7e-14 84.0 80 57.5
Medtr4g027430 Medicago truncatula HOM05D006638 ORTHO05D008246 1.7e-14 84.0 49 73.5
Nitab4.5_0011151g0010 Nicotiana tabacum HOM05D006638 ORTHO05D008246 1.7e-14 84.0 57 64.9
BcaC07g42567 Brassica carinata HOM05D006638 ORTHO05D008246 2.3e-14 83.6 73 54.8
CAN.G1872.5 Capsicum annuum HOM05D006638 ORTHO05D008246 2.3e-14 83.6 69 58.0
Rhsim01G0151400 Rhododendron simsii HOM05D006638 ORTHO05D008246 2.3e-14 83.6 49 73.5
BcaC07g41715 Brassica carinata HOM05D006638 ORTHO05D008246 3.0e-14 83.2 75 52.0
BraA09t41748Z Brassica rapa HOM05D006638 ORTHO05D008246 3.0e-14 83.2 73 53.4
Thecc.01G384300 Theobroma cacao HOM05D006638 ORTHO05D008246 3.9e-14 82.8 55 72.7
unitig_748.g7114 Utricularia gibba HOM05D006638 ORTHO05D008246 3.9e-14 82.8 46 80.4
MSTRG.4914 Avicennia marina HOM05D006638 ORTHO05D008246 6.6e-14 82.0 46 78.3
Carub.0001s1192 Capsella rubella HOM05D006638 ORTHO05D008246 8.7e-14 81.6 73 52.1
SGA_v2.0_scaffold43G16517 Striga asiatica HOM05D006638 ORTHO05D008246 8.7e-14 81.6 72 56.9
CARHR012550 Cardamine hirsuta HOM05D006638 ORTHO05D008246 1.1e-13 81.3 73 53.4
Duzib133G1291 Durio zibethinus HOM05D006638 ORTHO05D008246 1.1e-13 81.3 74 55.4
Oeu000021.1 Olea europaea HOM05D006638 ORTHO05D008246 1.1e-13 81.3 70 57.1
C08p47510 Brassica napus HOM05D006638 ORTHO05D008246 1.5e-13 80.9 75 50.7
Lsat_1_v5_gn_4_45501 Lactuca sativa HOM05D006638 ORTHO05D008246 1.5e-13 80.9 83 53.0
arahy.Tifrunner.gnm1.ann1.B645Y9 Arachis hypogaea HOM05D006638 ORTHO05D008246 1.9e-13 80.5 58 60.3
BolC8t52292H Brassica oleracea HOM05D006638 ORTHO05D008246 1.9e-13 80.5 97 44.3
CsaV3_3G007360 Cucumis sativus L. HOM05D006638 ORTHO05D008246 1.9e-13 80.5 49 75.5
AT1G12244 Arabidopsis thaliana HOM05D006638 ORTHO05D008246 2.5e-13 80.1 72 51.4
MELO3C005958.2 Cucumis melo HOM05D006638 ORTHO05D008246 2.5e-13 80.1 45 80.0
PGR142G0596 Punica granatum HOM05D006638 ORTHO05D008246 2.5e-13 80.1 88 54.5
Oeu026427.1 Olea europaea HOM05D011460 ORTHO05D010383 3.3e-13 79.7 92 51.1
Migut.N01611 Erythranthe guttata HOM05D006638 ORTHO05D008246 4.3e-13 79.3 46 76.1
Gohir.D12G097700 Gossypium hirsutum HOM05D006638 ORTHO05D008246 4.3e-13 79.3 66 65.2
Gorai.008G106400 Gossypium raimondii HOM05D006638 ORTHO05D008246 4.3e-13 79.3 66 65.2
arahy.Tifrunner.gnm1.ann1.WQW1G6 Arachis hypogaea HOM05D006638 ORTHO05D008246 5.6e-13 79.0 58 58.6
CDE02G4315 Ceratophyllum demersum HOM05D000218 ORTHO05D000125 7.3e-13 78.6 80 52.5
TPR.G27556 Trifolium pratense HOM05D006638 ORTHO05D008246 1.3e-12 77.8 49 67.3
Gohir.A12G095100 Gossypium hirsutum HOM05D006638 ORTHO05D008246 2.1e-12 77.0 58 69.0
Peaxi162Scf00803g00218 Petunia axillaris HOM05D006638 ORTHO05D008246 3.6e-12 76.3 64 56.2
Ciclev10023836m.g Citrus clementina HOM05D006638 ORTHO05D008246 4.8e-12 75.9 61 62.3
Eucgr.H00160 Eucalyptus grandis HOM05D006638 ORTHO05D008246 6.2e-12 75.5 43 79.1
ECA234G0121 Erigeron canadensis HOM05D006638 ORTHO05D008246 8.1e-12 75.1 50 66.0
EL10Ac1g00836 Beta vulgaris HOM05D006638 ORTHO05D008246 4.0e-11 72.8 45 73.3
Hma1.2p1_2080F.1_g313480 Hydrangea macrophylla HOM05D011460 ORTHO05D010383 5.3e-11 72.4 96 44.8
Sed0019776 Sechium edule HOM05D006638 ORTHO05D008246 9.0e-11 71.6 49 65.3
Lj1g0022300 Lotus japonicus HOM05D006638 ORTHO05D008246 1.2e-10 71.2 70 50.0
PSO170G5140 Papaver somniferum HOM05D006638 ORTHO05D008246 1.2e-10 71.2 44 70.5
Peaxi162Scf00254g00044 Petunia axillaris HOM05D011460 ORTHO05D010383 1.2e-10 71.2 93 45.2
Medtr2g064670 Medicago truncatula HOM05D006638 ORTHO05D008246 2.0e-10 70.5 41 70.7
Nitab4.5_0021955g0010 Nicotiana tabacum HOM05D011460 ORTHO05D010383 3.4e-10 69.7 93 44.1
Cc02_g24450 Coffea canephora HOM05D006638 ORTHO05D008246 1.7e-09 67.4 65 56.9
ATR0317G113 Amborella trichopoda HOM05D006638 ORTHO05D008246 2.2e-09 67.0 46 67.4
Lsat_1_v5_gn_1_125220 Lactuca sativa HOM05D006638 ORTHO05D008246 2.2e-09 67.0 86 48.8
Sc23g0003780 Simmondsia chinensis HOM05D006638 ORTHO05D008246 3.8e-09 66.2 47 70.2
Solyc12g035620.2 Solanum lycopersicum HOM05D006638 ORTHO05D008246 3.8e-09 66.2 48 60.4
Actinidia28951 Actinidia chinensis HOM05D011460 ORTHO05D010383 1.1e-08 64.7 47 66.0
Migut.F01990 Erythranthe guttata HOM05D011460 ORTHO05D010383 2.4e-08 63.5 93 44.1
Actinidia26624 Actinidia chinensis HOM05D002163 ORTHO05D002386 4.2e-08 62.8 43 69.8
HPP92_022319 Vanilla planifolia HOM05D006638 ORTHO05D008246 4.2e-08 62.8 46 65.2
CiPaw.01G275300 Carya illinoinensis HOM05D010935 ORTHO05D010383 5.4e-08 62.4 93 39.8
Solyc11g008750.1 Solanum lycopersicum HOM05D011460 ORTHO05D010383 5.4e-08 62.4 95 42.1
MSTRG.27468 Avicennia marina HOM05D011460 ORTHO05D010383 1.6e-07 60.8 104 37.5
Lsat_1_v5_gn_2_113841 Lactuca sativa HOM05D011460 ORTHO05D010383 1.6e-07 60.8 92 39.1
HPP92_022327 Vanilla planifolia HOM05D006638 ORTHO05D008246 2.1e-07 60.5 46 63.0
Lsat_1_v5_gn_6_51920 Lactuca sativa HOM05D006638 ORTHO05D008246 2.7e-07 60.1 39 66.7
Nitab4.5_0005460g0040 Nicotiana tabacum HOM05D011460 ORTHO05D010383 3.5e-07 59.7 99 35.4
DCAR_006457 Daucus carota HOM05D011460 ORTHO05D010383 7.9e-07 58.5 55 56.4
MD01G1111500 Malus domestica HOM05D010935 ORTHO05D010383 3.9e-06 56.2 93 40.9
Zm00001eb023510 Zea mays HOM05D006638 ORTHO05D008246 5.1e-06 55.8 55 58.2
Peaxi162Scf00890g00013 Petunia axillaris HOM05D011460 ORTHO05D010383 8.7e-06 55.1 59 45.8


User provided reference genes

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