Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro21009 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 4.7e-124 448.0 240 100.0
Rhsim01G0147400 Rhododendron simsii HOM05D006036 ORTHO05D007736 2.5e-85 319.3 211 82.9
Actinidia12688 Actinidia chinensis HOM05D006036 ORTHO05D007736 2.4e-80 302.8 203 76.4
CSS0011162 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 1.8e-75 286.6 203 75.9
CSS0022013 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 4.0e-75 285.4 204 75.5
Dinv32378 Davidia involucrata HOM05D006036 ORTHO05D007736 1.4e-72 276.9 167 79.6
PGSC0003DMG400012774 Solanum tuberosum HOM05D006036 ORTHO05D007736 2.3e-70 269.6 158 79.7
Solyc01g091360.4 Solanum lycopersicum HOM05D006036 ORTHO05D007736 3.9e-70 268.9 158 79.7
Nn1g01232 Nelumbo nucifera HOM05D006036 ORTHO05D007736 6.6e-70 268.1 204 66.2
Sopen01g037100 Solanum pennellii HOM05D006036 ORTHO05D007736 6.6e-70 268.1 158 79.1
Lj9A569G50 Lonicera japonica HOM05D006036 ORTHO05D007736 1.9e-69 266.5 163 77.3
DCAR_031531 Daucus carota HOM05D006036 ORTHO05D007736 4.7e-68 261.9 162 76.5
vmacro21008 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 1.4e-67 260.4 134 90.3
QL08p052466 Quercus lobata HOM05D006036 ORTHO05D007736 2.3e-67 259.6 205 64.4
Oeu037915.1 Olea europaea HOM05D006036 ORTHO05D007736 4.0e-67 258.8 163 75.5
GSVIVG01027612001 Vitis vinifera HOM05D006036 ORTHO05D007736 8.9e-67 257.7 160 76.9
Cc02_g36690 Coffea canephora HOM05D006036 ORTHO05D007736 1.2e-66 257.3 161 75.8
Atru.chr5.310 Acer truncatum HOM05D006036 ORTHO05D007736 2.0e-66 256.5 205 66.8
Prupe.2G145700 Prunus persica HOM05D006036 ORTHO05D007736 2.6e-66 256.1 204 66.2
Aqoxy7G00627 Aquilegia oxysepala HOM05D006036 ORTHO05D007736 3.4e-66 255.8 162 74.7
Gohir.A08G134500 Gossypium hirsutum HOM05D006036 ORTHO05D007736 5.8e-66 255.0 205 67.3
TPR.G9852 Trifolium pratense HOM05D006036 ORTHO05D007736 1.3e-65 253.8 158 74.1
Sed0014119 Sechium edule HOM05D006036 ORTHO05D007736 1.7e-65 253.4 162 74.1
EL10Ac1g00899 Beta vulgaris HOM05D006036 ORTHO05D007736 2.2e-65 253.1 161 74.5
Cfa001720 Carpinus fangiana HOM05D006036 ORTHO05D007736 2.2e-65 253.1 202 65.3
Manes.05G045200 Manihot esculenta HOM05D006036 ORTHO05D007736 2.9e-65 252.7 160 76.9
RcHm_v2.0_Chr1g0350591 Rosa chinensis HOM05D006036 ORTHO05D007736 2.9e-65 252.7 210 65.2
CiPaw.01G261900 Carya illinoinensis HOM05D006036 ORTHO05D007736 3.8e-65 252.3 204 65.2
CsaV3_6G006160 Cucumis sativus L. HOM05D006036 ORTHO05D007736 3.8e-65 252.3 210 61.4
Glyma.01G142900 Glycine max HOM05D006036 ORTHO05D007736 3.8e-65 252.3 159 73.6
Psat7g231640 Pisum sativum HOM05D006036 ORTHO05D007736 3.8e-65 252.3 158 73.4
Hund17020 Selenicereus undatus HOM05D006036 ORTHO05D007736 3.8e-65 252.3 160 74.4
Medtr4g023550 Medicago truncatula HOM05D006036 ORTHO05D007736 4.9e-65 251.9 159 73.0
Ah.16g109830 Amaranthus hybridus HOM05D006036 ORTHO05D007736 6.4e-65 251.5 213 62.0
Glyma.14G070200 Glycine max HOM05D006036 ORTHO05D007736 6.4e-65 251.5 159 73.6
FAN03G0372 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.4e-64 250.4 205 64.9
FAN10G3538 Fragaria x ananassa HOM05D006036 ORTHO05D007736 2.4e-64 249.6 205 64.4
Ca_03013_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 3.2e-64 249.2 158 72.2
FAN01G0425 Fragaria x ananassa HOM05D006036 ORTHO05D007736 3.2e-64 249.2 204 63.7
MSTRG.4890 Avicennia marina HOM05D006036 ORTHO05D007736 4.1e-64 248.8 161 73.9
Glyma.03G023900 Glycine max HOM05D006036 ORTHO05D007736 4.1e-64 248.8 159 72.3
ATR0810G113 Amborella trichopoda HOM05D006036 ORTHO05D007736 5.4e-64 248.4 161 73.9
Cpa.g.sc349.4 Carica papaya HOM05D006036 ORTHO05D007736 5.4e-64 248.4 158 76.6
Sabra02G0117300 Salix brachista HOM05D006036 ORTHO05D007736 5.4e-64 248.4 159 75.5
Lalb_Chr07g0189801 Lupinus albus HOM05D006036 ORTHO05D007736 7.1e-64 248.1 158 72.8
SalBow5G0783 Salvia bowleyana HOM05D006036 ORTHO05D007736 7.1e-64 248.1 159 73.6
Sc02g0002580 Simmondsia chinensis HOM05D006036 ORTHO05D007736 1.2e-63 247.3 162 74.7
Haze_16816 Corylus avellana HOM05D006036 ORTHO05D007736 1.6e-63 246.9 202 64.4
Sabra02G0115600 Salix brachista HOM05D006036 ORTHO05D007736 1.6e-63 246.9 159 74.8
CDE02G2016 Ceratophyllum demersum HOM05D006036 ORTHO05D007736 2.1e-63 246.5 158 76.6
HanXRQChr16g0520241 Helianthus annuus HOM05D006036 ORTHO05D007736 2.1e-63 246.5 161 73.9
PGR042G0035 Punica granatum HOM05D006036 ORTHO05D007736 2.7e-63 246.1 158 76.6
Sed0006891 Sechium edule HOM05D006036 ORTHO05D007736 2.7e-63 246.1 160 73.1
TWI14G1308 Tripterygium wilfordii HOM05D006036 ORTHO05D007736 2.7e-63 246.1 205 63.4
SalBow5G3583 Salvia bowleyana HOM05D006036 ORTHO05D007736 3.5e-63 245.7 159 73.0
Potri.002G148400 Populus trichocarpa HOM05D006036 ORTHO05D007736 4.6e-63 245.4 159 73.6
Lj3g0008791 Lotus japonicus HOM05D006036 ORTHO05D007736 7.8e-63 244.6 158 71.5
Thecc.01G376100 Theobroma cacao HOM05D006036 ORTHO05D007736 7.8e-63 244.6 161 75.2
FvH4_7g11910 Fragaria vesca HOM05D006036 ORTHO05D007736 1.0e-62 244.2 205 64.4
Duzib133G1287 Durio zibethinus HOM05D006036 ORTHO05D007736 1.3e-62 243.8 208 63.9
SEGI_01363 Sequoiadendron giganteum HOM05D006036 ORTHO05D007736 1.3e-62 243.8 161 70.2
AUR62013628 Chenopodium quinoa HOM05D006036 ORTHO05D007736 1.7e-62 243.4 160 72.5
unitig_8.g4983 Utricularia gibba HOM05D006036 ORTHO05D007736 2.3e-62 243.0 159 72.3
arahy.Tifrunner.gnm1.ann1.B3VI1A Arachis hypogaea HOM05D006036 ORTHO05D007736 3.0e-62 242.7 157 73.2
MBI04_g35276_MAGBIO Magnolia biondii HOM05D006036 ORTHO05D007736 3.0e-62 242.7 170 70.0
Glyma.08G286100 Glycine max HOM05D006036 ORTHO05D007736 1.5e-61 240.4 159 70.4
Phvul.010G084400 Phaseolus vulgaris HOM05D006036 ORTHO05D007736 1.5e-61 240.4 159 71.1
CANSAT56G2189 Cannabis sativa HOM05D006036 ORTHO05D007736 1.9e-61 240.0 159 73.6
Eucgr.E01417 Eucalyptus grandis HOM05D006036 ORTHO05D007736 2.5e-61 239.6 158 72.8
Lsat_1_v5_gn_4_40940 Lactuca sativa HOM05D006036 ORTHO05D007736 4.3e-61 238.8 158 72.8
MD02G1204100 Malus domestica HOM05D006036 ORTHO05D007736 4.3e-61 238.8 159 74.2
ECA234G4399 Erigeron canadensis HOM05D006036 ORTHO05D007736 4.7e-60 235.3 160 68.8
A09p53070 Brassica napus HOM05D006036 ORTHO05D007736 4.0e-59 232.3 203 63.1
C08p35770 Brassica napus HOM05D006036 ORTHO05D007736 4.0e-59 232.3 203 63.1
BolC8t51167H Brassica oleracea HOM05D006036 ORTHO05D007736 5.2e-59 231.9 203 63.1
Nitab4.5_0005372g0020 Nicotiana tabacum HOM05D006036 ORTHO05D007736 6.9e-59 231.5 135 78.5
Carub.0005s2756 Capsella rubella HOM05D006036 ORTHO05D007736 8.9e-59 231.1 202 62.9
BcaC07g40602 Brassica carinata HOM05D006036 ORTHO05D007736 1.5e-58 230.3 203 62.6
AT3G60810 Arabidopsis thaliana HOM05D006036 ORTHO05D007736 5.8e-58 228.4 157 73.9
AL5G43130 Arabidopsis lyrata HOM05D006036 ORTHO05D007736 7.6e-58 228.0 157 73.2
Aa31LG10G15050 Aethionema arabicum HOM05D006036 ORTHO05D007736 1.3e-57 227.3 157 74.5
Sp5g02440 Schrenkiella parvula HOM05D006036 ORTHO05D007736 1.7e-57 226.9 157 73.2
Thhalv10006234m.g Eutrema salsugineum HOM05D006036 ORTHO05D007736 2.2e-57 226.5 157 75.8
CARHR171200 Cardamine hirsuta HOM05D006036 ORTHO05D007736 2.9e-57 226.1 157 73.2
BcaC07g42642 Brassica carinata HOM05D006036 ORTHO05D007736 6.4e-57 224.9 157 72.6
BraA09t40733Z Brassica rapa HOM05D006036 ORTHO05D007736 8.4e-57 224.6 202 61.9
Medtr7g074920 Medicago truncatula HOM05D006036 ORTHO05D007736 8.4e-57 224.6 159 66.0
Zm00001eb210410 Zea mays HOM05D006036 ORTHO05D007736 1.4e-56 223.8 160 64.4
THA.LOC104802443 Tarenaya hassleriana HOM05D006036 ORTHO05D007736 4.2e-56 222.2 158 71.5
Ciclev10022362m.g Citrus clementina HOM05D006036 ORTHO05D007736 1.2e-55 220.7 135 79.3
AUR62004220 Chenopodium quinoa HOM05D006036 ORTHO05D007736 1.0e-54 217.6 155 67.1
Os03g0858700 Oryza sativa ssp. japonica HOM05D006036 ORTHO05D007736 1.0e-54 217.6 160 64.4
arahy.Tifrunner.gnm1.ann1.Y8TVDJ Arachis hypogaea HOM05D006036 ORTHO05D007736 1.1e-53 214.2 137 73.7
FAN10G0738 Fragaria x ananassa HOM05D006036 ORTHO05D007736 3.1e-51 206.1 134 74.6
Gohir.D08G155400 Gossypium hirsutum HOM05D006036 ORTHO05D007736 6.9e-51 204.9 178 62.9
Pp3c23_9860 Physcomitrium patens HOM05D006036 ORTHO05D007736 9.0e-51 204.5 161 61.5
AagrBONN_evm.TU.Sc2ySwM_117.1558 Anthoceros agrestis HOM05D006036 ORTHO05D007736 1.2e-50 204.1 156 61.5
Mapoly0007s0216 Marchantia polymorpha HOM05D006036 ORTHO05D007736 2.0e-50 203.4 158 58.9
Nitab4.5_0000457g0290 Nicotiana tabacum HOM05D006036 ORTHO05D007736 2.0e-50 203.4 160 64.4
SMO143G0045 Selaginella moellendorffii HOM05D006036 ORTHO05D007736 4.9e-49 198.7 138 68.1
SGA_v2.0_scaffold153G37014 Striga asiatica HOM05D006036 ORTHO05D001464 3.5e-47 192.6 162 59.3
Hma1.2p1_1122F.1_g259290 Hydrangea macrophylla HOM05D006036 ORTHO05D007736 1.3e-46 190.7 157 63.1
VMungo0251G0926 Vigna mungo HOM05D006036 ORTHO05D007736 1.9e-45 186.8 159 60.4
PSO782G0421 Papaver somniferum HOM05D006036 ORTHO05D007736 1.3e-44 184.1 161 57.8
PSO478G2400 Papaver somniferum HOM05D006036 ORTHO05D007736 3.1e-43 179.5 161 57.1
VMungo0331G0186 Vigna mungo HOM05D006036 ORTHO05D007736 7.6e-42 174.9 187 51.3
COL.COLO4_12549 Corchorus olitorius HOM05D006036 ORTHO05D007736 2.2e-41 173.3 120 73.3
Peaxi162Scf00021g01720 Petunia axillaris HOM05D006036 ORTHO05D007736 7.1e-40 168.3 92 85.9
CAN.G388.12 Capsicum annuum HOM05D006036 ORTHO05D007736 1.3e-36 157.5 92 80.4
Cre11.g468750 Chlamydomonas reinhardtii HOM05D006036 ORTHO05D007736 1.3e-36 157.5 166 47.0
ClCG06G000370 Citrullus lanatus HOM05D006036 ORTHO05D007736 1.6e-36 157.1 162 53.7
Glyma.09G269100 Glycine max HOM05D006036 ORTHO05D007736 2.4e-35 153.3 118 61.9
Lalb_Chr03g0039561 Lupinus albus HOM05D006036 ORTHO05D007736 1.0e-33 147.9 126 57.9
MELO3C035247.2 Cucumis melo HOM05D006036 ORTHO05D007736 2.5e-32 143.3 95 74.7
Ca_19909_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 1.1e-29 134.4 91 61.5
Migut.N01635 Erythranthe guttata HOM05D006036 ORTHO05D007736 2.5e-29 133.3 91 70.3
FAN06G2896 Fragaria x ananassa HOM05D006036 ORTHO05D007736 7.4e-29 131.7 77 80.5
FAN06G1700 Fragaria x ananassa HOM05D006036 ORTHO05D007736 6.9e-27 125.2 77 79.2
Gorai.007G091200 Gossypium raimondii HOM05D001611 ORTHO05D001464 2.9e-25 119.8 89 66.3
MELO3C034959.2 Cucumis melo HOM05D006036 ORTHO05D007736 2.5e-24 116.7 112 54.5
Gohir.D11G085366 Gossypium hirsutum HOM05D001611 ORTHO05D001464 3.2e-24 116.3 89 65.2
MCO13G087 Micromonas commoda HOM05D006036 ORTHO05D007736 1.2e-23 114.4 146 44.5
Ca_07819_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 1.1e-21 107.8 77 66.2
CBR_g54966 Chara braunii HOM05D006036 ORTHO05D007736 1.4e-19 100.9 70 65.7
Psat3g116040 Pisum sativum HOM05D006036 ORTHO05D007736 5.3e-19 99.0 65 72.3
Ciclev10033315m.g Citrus clementina HOM05D006036 ORTHO05D007736 2.6e-18 96.7 125 50.4
arahy.Tifrunner.gnm1.ann1.WD24C8 Arachis hypogaea HOM05D006036 ORTHO05D007736 3.0e-14 83.2 62 64.5
Lalb_Chr03g0039551 Lupinus albus HOM05D006036 ORTHO05D007736 2.2e-12 77.0 53 67.9
arahy.Tifrunner.gnm1.ann1.BW32E7 Arachis hypogaea HOM05D006036 ORTHO05D000587 2.4e-11 73.6 59 62.7
Gorai.004G161600 Gossypium raimondii HOM05D006036 ORTHO05D007736 2.6e-10 70.1 68 61.8
Lj1g0011795 Lotus japonicus HOM05D006036 ORTHO05D007736 1.9e-08 63.9 37 75.7


User provided reference genes

Program Settings