Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro20990 Vaccinium macrocarpon HOM05D004137 ORTHO05D004804 1.5e-37 159.1 86 100.0
Migut.J01885 Erythranthe guttata HOM05D004137 ORTHO05D004804 5.0e-20 100.9 63 79.4
Lsat_1_v5_gn_1_59720 Lactuca sativa HOM05D004137 ORTHO05D004804 3.2e-19 98.2 86 64.0
Solyc10g078570.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 8.8e-17 90.1 67 65.7
PGSC0003DMG400008382 Solanum tuberosum HOM05D004137 ORTHO05D004804 8.8e-17 90.1 67 65.7
CAN.G960.46 Capsicum annuum HOM05D004137 ORTHO05D004804 1.5e-16 89.4 67 65.7
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 7.5e-16 87.0 85 61.2
Manes.08G144511 Manihot esculenta HOM05D004137 ORTHO05D004804 9.8e-16 86.7 86 57.0
Ah.13g075420 Amaranthus hybridus HOM05D004137 ORTHO05D004804 2.8e-15 85.1 95 61.1
Gohir.D12G178750 Gossypium hirsutum HOM05D004137 ORTHO05D004804 3.7e-15 84.7 69 60.9
Potri.013G057766 Populus trichocarpa HOM05D004137 ORTHO05D004804 3.7e-15 84.7 86 55.8
Potri.013G057832 Populus trichocarpa HOM05D004137 ORTHO05D004804 3.7e-15 84.7 85 52.9
Gorai.008G191500 Gossypium raimondii HOM05D004137 ORTHO05D004804 6.3e-15 84.0 81 59.3
Gohir.A12G175500 Gossypium hirsutum HOM05D004137 ORTHO05D004804 8.3e-15 83.6 86 55.8
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 1.4e-14 82.8 63 66.7
Cc06_g23020 Coffea canephora HOM05D004137 ORTHO05D004804 2.4e-14 82.0 62 64.5
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 5.4e-14 80.9 63 66.7
Prupe.7G004500 Prunus persica HOM05D004137 ORTHO05D004804 2.7e-13 78.6 48 79.2
Cpa.g.sc51.119 Carica papaya HOM05D004137 ORTHO05D004804 4.5e-13 77.8 86 58.1
Cfa016445 Carpinus fangiana HOM05D001721 ORTHO05D001804 4.5e-13 77.8 59 67.8
Haze_19423 Corylus avellana HOM05D004137 ORTHO05D004804 4.5e-13 77.8 52 71.2
ClCG10G013400 Citrullus lanatus HOM05D004137 ORTHO05D004804 5.9e-13 77.4 68 60.3
Manes.09G141000 Manihot esculenta HOM05D004137 ORTHO05D004804 1.3e-12 76.3 86 51.2
PGSC0003DMG400023737 Solanum tuberosum HOM05D004137 ORTHO05D004804 2.3e-12 75.5 69 56.5
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 5.0e-12 74.3 87 52.9
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 8.6e-12 73.6 63 60.3
MELO3C026884.2 Cucumis melo HOM05D004137 ORTHO05D004804 1.5e-11 72.8 60 58.3
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 2.5e-11 72.0 61 62.3
FvH4_4g27600 Fragaria vesca HOM05D004137 ORTHO05D004804 2.5e-11 72.0 62 64.5
Ciclev10023092m.g Citrus clementina HOM05D004137 ORTHO05D004804 1.6e-10 69.3 56 60.7
CiPaw.09G002200 Carya illinoinensis HOM05D004137 ORTHO05D004804 2.1e-10 68.9 87 49.4
Lj1g0005734 Lotus japonicus HOM05D004137 ORTHO05D004804 2.1e-10 68.9 62 58.1
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 2.1e-10 68.9 93 53.8
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 2.8e-10 68.6 63 58.7
Medtr7g085660 Medicago truncatula HOM05D004137 ORTHO05D004804 3.6e-10 68.2 61 57.4
Sed0004008 Sechium edule HOM05D004137 ORTHO05D004804 3.6e-10 68.2 60 55.0
Lalb_Chr14g0364521 Lupinus albus HOM05D004137 ORTHO05D004804 4.7e-10 67.8 63 55.6
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 4.7e-10 67.8 63 57.1
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 5.2e-09 64.3 61 55.7
Glyma.19G112300 Glycine max HOM05D004137 ORTHO05D004804 5.2e-09 64.3 62 58.1
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 2.0e-08 62.4 60 55.0
Solyc06g064610.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 2.0e-08 62.4 61 52.5
Sopen06g023090 Solanum pennellii HOM05D004137 ORTHO05D004804 2.6e-08 62.0 61 50.8
Peaxi162Scf00003g04814 Petunia axillaris HOM05D004137 ORTHO05D004804 7.5e-08 60.5 35 77.1
PGSC0003DMG400033149 Solanum tuberosum HOM05D004137 ORTHO05D004804 9.8e-08 60.1 60 50.0
VMungo1383G3601 Vigna mungo HOM05D001721 ORTHO05D001804 9.8e-08 60.1 62 54.8
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 1.3e-07 59.7 63 52.4
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.7e-07 59.3 63 52.4
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.7e-07 59.3 63 52.4
Phvul.001G111100 Phaseolus vulgaris HOM05D004137 ORTHO05D004804 1.7e-07 59.3 62 53.2
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 2.8e-07 58.5 63 52.4
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 3.7e-07 58.2 70 50.0
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 1.1e-06 56.6 63 50.8
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 1.1e-06 56.6 61 47.5
Medtr8g088460 Medicago truncatula HOM05D004137 ORTHO05D004804 1.1e-06 56.6 62 45.2
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 1.8e-06 55.8 63 52.4
HPP92_015924 Vanilla planifolia HOM05D004137 ORTHO05D004804 1.8e-06 55.8 62 48.4
ECA248G0157 Erigeron canadensis HOM05D004137 ORTHO05D004804 2.4e-06 55.5 61 47.5
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 2.4e-06 55.5 61 47.5
BcaC05g29894 Brassica carinata HOM05D004137 ORTHO05D004804 3.1e-06 55.1 59 47.5
BolC5t34968H Brassica oleracea HOM05D004137 ORTHO05D004804 3.1e-06 55.1 59 47.5
Migut.N00553 Erythranthe guttata HOM05D004137 ORTHO05D004804 4.1e-06 54.7 61 50.8
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 4.1e-06 54.7 61 45.9
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 4.1e-06 54.7 61 45.9
BcaC05g30244 Brassica carinata HOM05D004137 ORTHO05D004804 5.4e-06 54.3 59 47.5
BcaC05g30291 Brassica carinata HOM05D004137 ORTHO05D004804 5.4e-06 54.3 59 47.5
A05p43490 Brassica napus HOM05D004137 ORTHO05D004804 5.4e-06 54.3 59 47.5
BraA05t23089Z Brassica rapa HOM05D004137 ORTHO05D004804 5.4e-06 54.3 59 47.5
ClCG02G024390 Citrullus lanatus HOM05D004137 ORTHO05D004804 5.4e-06 54.3 86 44.2
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 5.4e-06 54.3 61 50.8
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 5.4e-06 54.3 68 44.1
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 5.4e-06 54.3 49 57.1
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 7.0e-06 53.9 60 45.0
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 7.0e-06 53.9 61 50.8


User provided reference genes

Program Settings