Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro20986 Vaccinium macrocarpon HOM05D003466 ORTHO05D004102 2.8e-53 212.2 155 100.0
vmacro09137 Vaccinium macrocarpon HOM05D003466 ORTHO05D004102 9.3e-41 170.6 169 81.7
Rhsim07G0176000 Rhododendron simsii HOM05D003466 ORTHO05D004102 1.8e-23 113.2 90 72.2
Hma1.2p1_0106F.1_g051170 Hydrangea macrophylla HOM05D003466 ORTHO05D004102 5.8e-19 98.2 114 52.6
THA.LOC104802883 Tarenaya hassleriana HOM05D003466 ORTHO05D004102 2.9e-18 95.9 113 50.4
MD01G1001200 Malus domestica HOM05D003466 ORTHO05D004102 8.4e-18 94.4 114 53.5
THA.LOC104820792 Tarenaya hassleriana HOM05D003466 ORTHO05D004102 8.4e-18 94.4 113 48.7
CDE06G0321 Ceratophyllum demersum HOM05D003466 ORTHO05D004102 1.1e-17 94.0 85 60.0
Lj4g0028177 Lotus japonicus HOM05D003466 ORTHO05D004102 1.1e-17 94.0 103 56.3
RcHm_v2.0_Chr7g0222731 Rosa chinensis HOM05D003466 ORTHO05D004102 1.1e-17 94.0 90 60.0
FvH4_5g26300 Fragaria vesca HOM05D003466 ORTHO05D004102 1.4e-17 93.6 90 60.0
FAN13G2307 Fragaria x ananassa HOM05D003466 ORTHO05D004102 1.4e-17 93.6 90 60.0
FAN18G1357 Fragaria x ananassa HOM05D003466 ORTHO05D004102 1.4e-17 93.6 90 60.0
Aqoxy1G00514 Aquilegia oxysepala HOM05D003466 ORTHO05D004102 1.9e-17 93.2 90 60.0
Peaxi162Scf00071g00424 Petunia axillaris HOM05D003466 ORTHO05D004102 2.5e-17 92.8 114 51.8
FAN01G2678 Fragaria x ananassa HOM05D003466 ORTHO05D004102 3.2e-17 92.4 90 58.9
RcHm_v2.0_Chr2g0119581 Rosa chinensis HOM05D003466 ORTHO05D004102 7.1e-17 91.3 87 59.8
FAN27G0165 Fragaria x ananassa HOM05D003466 ORTHO05D004102 9.3e-17 90.9 87 59.8
FAN15G3298 Fragaria x ananassa HOM05D003466 ORTHO05D004102 1.6e-16 90.1 90 56.7
CARHR195220 Cardamine hirsuta HOM05D003466 ORTHO05D004102 3.5e-16 89.0 119 47.1
Atru.chr7.542 Acer truncatum HOM05D003466 ORTHO05D004102 2.3e-15 86.3 113 49.6
DCAR_004345 Daucus carota HOM05D003466 ORTHO05D004102 1.9e-14 83.2 77 61.0
Thhalv10009152m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 3.7e-13 79.0 77 53.2
Thhalv10023970m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 3.7e-13 79.0 77 53.2
BraA01t03144Z Brassica rapa HOM05D003466 ORTHO05D004102 6.3e-13 78.2 95 50.5
VMungo0251G3008 Vigna mungo HOM05D003466 ORTHO05D004102 6.3e-13 78.2 93 53.8
CiPaw.15G127600 Carya illinoinensis HOM05D003466 ORTHO05D004102 8.2e-13 77.8 69 65.2
vmacro20985 Vaccinium macrocarpon HOM05D003466 ORTHO05D004102 8.2e-13 77.8 151 46.4
ClCG04G004740 Citrullus lanatus HOM05D003466 ORTHO05D004102 1.1e-12 77.4 113 47.8
MELO3C008863.2 Cucumis melo HOM05D003466 ORTHO05D004102 1.1e-12 77.4 113 47.8
Sed0012489 Sechium edule HOM05D003466 ORTHO05D004102 1.1e-12 77.4 69 62.3
Oeu012666.1 Olea europaea HOM05D003466 ORTHO05D004102 1.4e-12 77.0 113 47.8
Phvul.003G051500 Phaseolus vulgaris HOM05D003466 ORTHO05D004102 1.4e-12 77.0 93 52.7
BcaB03g14395 Brassica carinata HOM05D003466 ORTHO05D004102 1.8e-12 76.6 88 47.7
C07p24050 Brassica napus HOM05D003466 ORTHO05D004102 1.8e-12 76.6 88 47.7
BolC7t42929H Brassica oleracea HOM05D003466 ORTHO05D004102 1.8e-12 76.6 88 47.7
CsaV3_4G031590 Cucumis sativus L. HOM05D003466 ORTHO05D004102 1.8e-12 76.6 89 52.8
Carub.0006s1611 Capsella rubella HOM05D003466 ORTHO05D004102 2.4e-12 76.3 121 43.0
PSO063G0954 Papaver somniferum HOM05D003466 ORTHO05D004102 3.1e-12 75.9 92 53.3
PSO339G1378 Papaver somniferum HOM05D003466 ORTHO05D004102 3.1e-12 75.9 92 53.3
Dinv13777 Davidia involucrata HOM05D003466 ORTHO05D004102 4.1e-12 75.5 93 52.7
Sed0007742 Sechium edule HOM05D003466 ORTHO05D004102 4.1e-12 75.5 89 51.7
Actinidia38929 Actinidia chinensis HOM05D003466 ORTHO05D004102 5.3e-12 75.1 95 51.6
Dinv05554 Davidia involucrata HOM05D003466 ORTHO05D004102 5.3e-12 75.1 93 52.7
Dinv25045 Davidia involucrata HOM05D003466 ORTHO05D004102 5.3e-12 75.1 93 52.7
CSS0032791 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 6.9e-12 74.7 93 51.6
CSS0047344 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 6.9e-12 74.7 93 51.6
Haze_21188 Corylus avellana HOM05D003466 ORTHO05D004102 6.9e-12 74.7 93 51.6
Haze_22082 Corylus avellana HOM05D003466 ORTHO05D004102 6.9e-12 74.7 93 51.6
DCAR_012262 Daucus carota HOM05D003466 ORTHO05D004102 6.9e-12 74.7 71 59.2
AUR62042249 Chenopodium quinoa HOM05D003466 ORTHO05D004102 1.2e-11 73.9 80 52.5
Lj1C1073T4 Lonicera japonica HOM05D003466 ORTHO05D004102 1.5e-11 73.6 83 50.6
MSTRG.150 Avicennia marina HOM05D003466 ORTHO05D004102 2.0e-11 73.2 95 52.6
PGR142G0405 Punica granatum HOM05D003466 ORTHO05D004102 2.0e-11 73.2 92 48.9
AT5G17900 Arabidopsis thaliana HOM05D003466 ORTHO05D004102 2.6e-11 72.8 119 42.0
Nn1g06321 Nelumbo nucifera HOM05D003466 ORTHO05D004102 2.6e-11 72.8 92 51.1
Psat7g075240 Pisum sativum HOM05D003466 ORTHO05D004102 3.4e-11 72.4 95 49.5
Rhsim09G0189500 Rhododendron simsii HOM05D003466 ORTHO05D004102 3.4e-11 72.4 95 49.5
Sp3g32640 Schrenkiella parvula HOM05D003466 ORTHO05D004102 3.4e-11 72.4 113 38.9
MSTRG.8394 Avicennia marina HOM05D003466 ORTHO05D004102 4.5e-11 72.0 106 48.1
Eucgr.E01598 Eucalyptus grandis HOM05D003466 ORTHO05D004102 4.5e-11 72.0 72 55.6
QL06p022006 Quercus lobata HOM05D003466 ORTHO05D004102 4.5e-11 72.0 69 58.0
TAR623G0841 Trochodendron aralioides HOM05D003466 ORTHO05D004102 4.5e-11 72.0 93 50.5
AT4G08580 Arabidopsis thaliana HOM05D003466 ORTHO05D004102 1.0e-10 70.9 119 41.2
Eucgr.L03273 Eucalyptus grandis HOM05D003466 ORTHO05D004102 1.0e-10 70.9 72 54.2
TPR.G11896 Trifolium pratense HOM05D003466 ORTHO05D004102 1.0e-10 70.9 95 48.4
vmacro10385 Vaccinium macrocarpon HOM05D003466 ORTHO05D004102 1.0e-10 70.9 93 48.4
BcaB08g34851 Brassica carinata HOM05D003466 ORTHO05D004102 1.3e-10 70.5 89 46.1
Hund15775 Selenicereus undatus HOM05D003466 ORTHO05D004102 1.3e-10 70.5 69 56.5
Carub.0008s1310 Capsella rubella HOM05D003466 ORTHO05D004102 1.7e-10 70.1 93 48.4
MD15G1341800 Malus domestica HOM05D003466 ORTHO05D004102 1.7e-10 70.1 93 48.4
Medtr8g083140 Medicago truncatula HOM05D003466 ORTHO05D004102 1.7e-10 70.1 68 58.8
Cc00_g13080 Coffea canephora HOM05D003466 ORTHO05D004102 2.2e-10 69.7 92 48.9
HPP92_009864 Vanilla planifolia HOM05D003466 ORTHO05D004102 2.2e-10 69.7 91 50.5
CSS0012966 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 2.9e-10 69.3 104 49.0
CSS0029529 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 2.9e-10 69.3 104 49.0
Lsat_1_v5_gn_1_55421 Lactuca sativa HOM05D003466 ORTHO05D004102 2.9e-10 69.3 114 42.1
MBI14_g30653_MAGBIO Magnolia biondii HOM05D003466 ORTHO05D004102 2.9e-10 69.3 96 47.9
Aa31LG11G11660 Aethionema arabicum HOM05D003466 ORTHO05D004102 3.8e-10 68.9 119 43.7
Ca_17998_v3 Cicer arietinum L. HOM05D003466 ORTHO05D004102 5.0e-10 68.6 71 56.3
QL04p079149 Quercus lobata HOM05D003466 ORTHO05D004102 5.0e-10 68.6 67 58.2
C03p09970 Brassica napus HOM05D003466 ORTHO05D004102 6.5e-10 68.2 95 47.4
SMO364G0903 Selaginella moellendorffii HOM05D003466 ORTHO05D004102 8.5e-10 67.8 90 45.6
Thecc.05G242600 Theobroma cacao HOM05D003466 ORTHO05D004102 1.9e-09 66.6 92 47.8
ATR0697G059 Amborella trichopoda HOM05D003466 ORTHO05D004102 2.5e-09 66.2 93 46.2
BcaB01g05163 Brassica carinata HOM05D003466 ORTHO05D004102 2.5e-09 66.2 95 46.3
BcaC04g18745 Brassica carinata HOM05D003466 ORTHO05D004102 2.5e-09 66.2 95 46.3
A03p08540 Brassica napus HOM05D003466 ORTHO05D004102 2.5e-09 66.2 95 46.3
A10p21590 Brassica napus HOM05D003466 ORTHO05D004102 2.5e-09 66.2 95 46.3
C09p59160 Brassica napus HOM05D003466 ORTHO05D004102 2.5e-09 66.2 95 46.3
BolC3t13485H Brassica oleracea HOM05D003466 ORTHO05D004102 2.5e-09 66.2 95 46.3
BolC9t58759H Brassica oleracea HOM05D003466 ORTHO05D004102 2.5e-09 66.2 95 46.3
BraA03t10180Z Brassica rapa HOM05D003466 ORTHO05D004102 2.5e-09 66.2 95 46.3
BraA10t44221Z Brassica rapa HOM05D003466 ORTHO05D004102 2.5e-09 66.2 95 46.3
Prupe.6G162200 Prunus persica HOM05D003466 ORTHO05D004102 2.5e-09 66.2 68 57.4
AL6G29010 Arabidopsis lyrata HOM05D003466 ORTHO05D004102 3.2e-09 65.9 119 41.2
Potri.019G039900 Populus trichocarpa HOM05D003466 ORTHO05D004102 3.2e-09 65.9 93 47.3
Sp6g26370 Schrenkiella parvula HOM05D003466 ORTHO05D004102 3.2e-09 65.9 95 46.3
Ah.12g064760 Amaranthus hybridus HOM05D003466 ORTHO05D004102 4.2e-09 65.5 67 55.2
BcaB01g04922 Brassica carinata HOM05D003466 ORTHO05D004102 4.2e-09 65.5 89 44.9
Duzib106G0204 Durio zibethinus HOM05D003466 ORTHO05D004102 4.2e-09 65.5 92 45.7
Gohir.A11G229400 Gossypium hirsutum HOM05D003466 ORTHO05D004102 5.5e-09 65.1 82 47.6
Gohir.D11G241400 Gossypium hirsutum HOM05D003466 ORTHO05D004102 5.5e-09 65.1 82 47.6
Gorai.007G255500 Gossypium raimondii HOM05D003466 ORTHO05D004102 5.5e-09 65.1 82 47.6
Os02g0280100 Oryza sativa ssp. japonica HOM05D003466 ORTHO05D004102 5.5e-09 65.1 111 41.4
QL04p079025 Quercus lobata HOM05D003466 ORTHO05D004102 5.5e-09 65.1 64 56.2
SalBow7G4471 Salvia bowleyana HOM05D003466 ORTHO05D004102 7.2e-09 64.7 96 47.9
Ah.12g064750 Amaranthus hybridus HOM05D003466 ORTHO05D004102 9.4e-09 64.3 67 55.2
Nn1g00582 Nelumbo nucifera HOM05D003466 ORTHO05D004102 1.2e-08 63.9 92 45.7
Prupe.4G226700 Prunus persica HOM05D003466 ORTHO05D004102 1.2e-08 63.9 69 53.6
Duzib128G1823 Durio zibethinus HOM05D003466 ORTHO05D004102 3.6e-08 62.4 74 47.3
EL10Ac2g02698 Beta vulgaris HOM05D003466 ORTHO05D004102 4.6e-08 62.0 64 54.7
Lalb_Chr12g0205661 Lupinus albus HOM05D003466 ORTHO05D004102 4.6e-08 62.0 90 47.8
Sc10g0003130 Simmondsia chinensis HOM05D003466 ORTHO05D004102 4.6e-08 62.0 58 53.4
FAN15G1350 Fragaria x ananassa HOM05D003466 ORTHO05D004102 6.1e-08 61.6 69 52.2
unitig_8.g3898 Utricularia gibba HOM05D003466 ORTHO05D004102 7.9e-08 61.2 113 40.7
AUR62032478 Chenopodium quinoa HOM05D003466 ORTHO05D004102 1.0e-07 60.8 71 50.7
TWI34G0391 Tripterygium wilfordii HOM05D003466 ORTHO05D004102 1.0e-07 60.8 124 40.3
Glyma.05G151500 Glycine max HOM05D003466 ORTHO05D004102 1.4e-07 60.5 93 46.2
Thhalv10013587m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 1.8e-07 60.1 119 40.3
TPR.G4989 Trifolium pratense HOM05D003466 ORTHO05D004102 1.8e-07 60.1 79 48.1
ECA248G3292 Erigeron canadensis HOM05D003466 ORTHO05D004102 2.3e-07 59.7 72 51.4
SEGI_04842 Sequoiadendron giganteum HOM05D003466 ORTHO05D004102 2.3e-07 59.7 69 49.3
BcaB08g36728 Brassica carinata HOM05D003466 ORTHO05D004102 3.9e-07 58.9 95 43.2
CBR_g12232 Chara braunii HOM05D003466 ORTHO05D004102 3.9e-07 58.9 84 44.0
COL.COLO4_29543 Corchorus olitorius HOM05D003466 ORTHO05D004102 6.7e-07 58.2 96 44.8
unitig_22.g5474 Utricularia gibba HOM05D003466 ORTHO05D004102 6.7e-07 58.2 104 39.4
Zm00001eb196610 Zea mays HOM05D003466 ORTHO05D004102 1.1e-06 57.4 90 42.2
Os06g0335101 Oryza sativa ssp. japonica HOM05D003466 ORTHO05D004102 1.5e-06 57.0 85 43.5
COL.COLO4_17204 Corchorus olitorius HOM05D003466 ORTHO05D004102 2.0e-06 56.6 94 47.9
Migut.F01214 Erythranthe guttata HOM05D003466 ORTHO05D004102 2.0e-06 56.6 96 41.7
Lj1g0005079 Lotus japonicus HOM05D003466 ORTHO05D004102 2.0e-06 56.6 118 38.1
LjContig00357g0023779 Lotus japonicus HOM05D003466 ORTHO05D004102 3.3e-06 55.8 103 39.8
SGA_v2.0_scaffold44G16596 Striga asiatica HOM05D003466 ORTHO05D004102 4.3e-06 55.5 101 40.6
Eucgr.J03113 Eucalyptus grandis HOM05D003466 ORTHO05D004102 7.4e-06 54.7 97 41.2


User provided reference genes

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