Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro20972 Vaccinium macrocarpon HOM05D007580 ORTHO05D009620 3.4e-70 268.5 161 100.0
Rhsim01G0155700 Rhododendron simsii HOM05D007580 ORTHO05D009620 1.0e-21 107.5 77 72.7
Duzib138G0841 Durio zibethinus HOM05D007580 ORTHO05D009620 2.2e-16 89.7 105 51.4
Actinidia33444 Actinidia chinensis HOM05D007580 ORTHO05D009620 6.3e-16 88.2 69 65.2
COL.COLO4_12626 Corchorus olitorius HOM05D007580 ORTHO05D009620 1.4e-15 87.0 108 50.0
Duzib133G0099 Durio zibethinus HOM05D007580 ORTHO05D009620 1.4e-15 87.0 106 50.0
Manes.05G040200 Manihot esculenta HOM05D007580 ORTHO05D009620 1.4e-15 87.0 90 53.3
QL08p050656 Quercus lobata HOM05D007580 ORTHO05D009620 1.8e-15 86.7 133 44.4
Sabra14G0055200 Salix brachista HOM05D007580 ORTHO05D009620 2.4e-15 86.3 105 50.5
Ciclev10023708m.g Citrus clementina HOM05D007580 ORTHO05D009620 4.1e-15 85.5 104 47.1
Hma1.2p1_0398F.1_g143830 Hydrangea macrophylla HOM05D007580 ORTHO05D009620 3.4e-14 82.4 141 41.8
Gohir.A08G129400 Gossypium hirsutum HOM05D007580 ORTHO05D009620 5.9e-14 81.6 107 50.5
Gorai.004G156400 Gossypium raimondii HOM05D007580 ORTHO05D009620 7.7e-14 81.3 107 50.5
CANSAT56G4452 Cannabis sativa HOM05D007580 ORTHO05D009620 1.3e-13 80.5 75 56.0
Nitab4.5_0004550g0100 Nicotiana tabacum HOM05D007580 ORTHO05D009620 1.3e-13 80.5 107 48.6
Potri.014G077000 Populus trichocarpa HOM05D007580 ORTHO05D009620 1.3e-13 80.5 99 48.5
Thecc.01G368700 Theobroma cacao HOM05D007580 ORTHO05D009620 1.3e-13 80.5 106 49.1
Potri.002G153000 Populus trichocarpa HOM05D007580 ORTHO05D009620 1.7e-13 80.1 104 50.0
TAR375G0300 Trochodendron aralioides HOM05D007580 ORTHO05D009620 1.7e-13 80.1 99 45.5
MD07G1128600 Malus domestica HOM05D007580 ORTHO05D009620 2.9e-13 79.3 103 57.3
TWI14G1086 Tripterygium wilfordii HOM05D007580 ORTHO05D009620 2.9e-13 79.3 106 46.2
Gohir.D08G150700 Gossypium hirsutum HOM05D007580 ORTHO05D009620 5.0e-13 78.6 107 50.5
Sc23g0003300 Simmondsia chinensis HOM05D007580 ORTHO05D009620 1.1e-12 77.4 98 45.9
Sabra02G0121300 Salix brachista HOM05D007580 ORTHO05D009620 1.4e-12 77.0 68 60.3
Cfa004181 Carpinus fangiana HOM05D007580 ORTHO05D009620 1.9e-12 76.6 109 47.7
Haze_15227 Corylus avellana HOM05D007580 ORTHO05D009620 2.5e-12 76.3 109 47.7
Manes.01G262404 Manihot esculenta HOM05D007580 ORTHO05D009620 3.2e-12 75.9 75 57.3
CSS0034624 Camellia sinensis var. sinensis HOM05D007580 ORTHO05D009620 7.2e-12 74.7 77 54.5
Nn1g01349 Nelumbo nucifera HOM05D007580 ORTHO05D009620 7.2e-12 74.7 103 43.7
ClCG06G000100 Citrullus lanatus HOM05D007580 ORTHO05D009620 1.2e-11 73.9 99 47.5
PGSC0003DMG400017056 Solanum tuberosum HOM05D007580 ORTHO05D009620 1.2e-11 73.9 104 46.2
TAR003G0002 Trochodendron aralioides HOM05D007580 ORTHO05D009620 1.2e-11 73.9 103 43.7
Glyma.18G227800 Glycine max HOM05D007580 ORTHO05D009620 1.6e-11 73.6 97 45.4
TAR656G0002 Trochodendron aralioides HOM05D007580 ORTHO05D009620 1.6e-11 73.6 103 43.7
Lalb_Chr01g0021151 Lupinus albus HOM05D007580 ORTHO05D009620 3.6e-11 72.4 113 54.0
Prupe.2G154500 Prunus persica HOM05D007580 ORTHO05D009620 3.6e-11 72.4 111 48.6
Sed0005443 Sechium edule HOM05D007580 ORTHO05D009620 3.6e-11 72.4 98 44.9
GSVIVG01027528001 Vitis vinifera HOM05D007580 ORTHO05D009620 3.6e-11 72.4 69 55.1
RcHm_v2.0_Chr1g0352211 Rosa chinensis HOM05D007580 ORTHO05D009620 4.7e-11 72.0 103 47.6
DCAR_006906 Daucus carota HOM05D007580 ORTHO05D009620 1.0e-10 70.9 123 40.7
PGR031G3829 Punica granatum HOM05D007580 ORTHO05D009620 1.0e-10 70.9 68 55.9
Solyc01g091790.2 Solanum lycopersicum HOM05D007580 ORTHO05D009620 1.4e-10 70.5 127 40.9
CARHR000490 Cardamine hirsuta HOM05D007580 ORTHO05D009620 3.0e-10 69.3 106 42.5
Medtr7g076270 Medicago truncatula HOM05D007580 ORTHO05D009620 3.9e-10 68.9 100 41.0
Lsat_1_v5_gn_7_8421 Lactuca sativa HOM05D007580 ORTHO05D009620 5.2e-10 68.6 67 56.7
Lsat_1_v5_gn_7_8361 Lactuca sativa HOM05D007580 ORTHO05D009620 6.7e-10 68.2 69 55.1
Sopen01g037570 Solanum pennellii HOM05D007580 ORTHO05D009620 8.8e-10 67.8 146 37.7
TPR.G37829 Trifolium pratense HOM05D007580 ORTHO05D009620 1.1e-09 67.4 72 48.6
Carub.0001s0037 Capsella rubella HOM05D007580 ORTHO05D009620 1.5e-09 67.0 103 43.7
MELO3C022528.2 Cucumis melo HOM05D007580 ORTHO05D009620 2.0e-09 66.6 71 52.1
CsaV3_6G005830 Cucumis sativus L. HOM05D007580 ORTHO05D009620 2.0e-09 66.6 71 52.1
Migut.B01687 Erythranthe guttata HOM05D007580 ORTHO05D009620 2.0e-09 66.6 108 41.7
BcaB03g13622 Brassica carinata HOM05D007580 ORTHO05D009620 2.6e-09 66.2 76 47.4
BolC5t28812H Brassica oleracea HOM05D007580 ORTHO05D009620 2.6e-09 66.2 76 47.4
Peaxi162Scf00021g00055 Petunia axillaris HOM05D007580 ORTHO05D009620 2.6e-09 66.2 70 55.7
Aqoxy7G00453 Aquilegia oxysepala HOM05D007580 ORTHO05D009620 3.3e-09 65.9 105 38.1
CiPaw.01G053500 Carya illinoinensis HOM05D007580 ORTHO05D009620 3.3e-09 65.9 126 38.1
Thhalv10009990m.g Eutrema salsugineum HOM05D007580 ORTHO05D009620 3.3e-09 65.9 106 42.5
AT1G01840 Arabidopsis thaliana HOM05D007580 ORTHO05D009620 5.7e-09 65.1 75 48.0
FAN03G2022 Fragaria x ananassa HOM05D007580 ORTHO05D009620 5.7e-09 65.1 103 44.7
AL1G10480 Arabidopsis lyrata HOM05D007580 ORTHO05D009620 7.4e-09 64.7 77 49.4
Glyma.09G264200 Glycine max HOM05D007580 ORTHO05D009620 7.4e-09 64.7 155 34.8
Ca_07865_v3 Cicer arietinum L. HOM05D007580 ORTHO05D009620 2.2e-08 63.2 72 45.8
Oeu024417.1 Olea europaea HOM05D007580 ORTHO05D009620 2.2e-08 63.2 72 50.0
A10p00190 Brassica napus HOM05D007580 ORTHO05D009620 2.8e-08 62.8 76 47.4
BraA10t42299Z Brassica rapa HOM05D007580 ORTHO05D009620 2.8e-08 62.8 76 47.4
FAN01G0874 Fragaria x ananassa HOM05D007580 ORTHO05D009620 3.7e-08 62.4 103 43.7
FAN06G3292 Fragaria x ananassa HOM05D007580 ORTHO05D009620 3.7e-08 62.4 103 43.7
FAN06G5062 Fragaria x ananassa HOM05D007580 ORTHO05D009620 3.7e-08 62.4 103 43.7
AUR62033366 Chenopodium quinoa HOM05D007580 ORTHO05D009620 4.8e-08 62.0 101 42.6
Aa31LG1G11200 Aethionema arabicum HOM05D007580 ORTHO05D009620 6.3e-08 61.6 79 46.8
ECA236G4638 Erigeron canadensis HOM05D007580 ORTHO05D009620 6.3e-08 61.6 71 49.3
SGA_v2.0_scaffold95G28871 Striga asiatica HOM05D007580 ORTHO05D009620 6.3e-08 61.6 70 52.9
Sp1g00440 Schrenkiella parvula HOM05D007580 ORTHO05D009620 8.2e-08 61.2 75 46.7
FAN10G2444 Fragaria x ananassa HOM05D007580 ORTHO05D009620 1.4e-07 60.5 103 41.7
Psat0s1132g0080 Pisum sativum HOM05D007580 ORTHO05D009620 1.8e-07 60.1 73 43.8
Nitab4.5_0010430g0050 Nicotiana tabacum HOM05D007580 ORTHO05D009620 1.2e-06 57.4 77 48.1
THA.LOC104814091 Tarenaya hassleriana HOM05D007580 ORTHO05D009620 2.0e-06 56.6 103 40.8
VMungo1383G0280 Vigna mungo HOM05D007580 ORTHO05D009620 5.9e-06 55.1 72 45.8


User provided reference genes

Program Settings