Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro20943 Vaccinium macrocarpon HOM05D000509 ORTHO05D006393 2.0e-60 235.7 130 100.0
Rhsim07G0118400 Rhododendron simsii HOM05D000509 ORTHO05D006393 3.0e-40 168.7 117 81.2
Rhsim07G0117300 Rhododendron simsii HOM05D000509 ORTHO05D006393 7.3e-39 164.1 118 79.7
Rhsim07G0117600 Rhododendron simsii HOM05D000509 ORTHO05D006393 2.2e-35 152.5 117 81.2
Actinidia12704 Actinidia chinensis HOM05D000509 ORTHO05D006393 1.3e-32 143.3 116 70.7
CSS0014656 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 1.1e-31 140.2 116 67.2
Dinv41795 Davidia involucrata HOM05D000509 ORTHO05D006393 4.3e-31 138.3 119 64.7
Dinv32484 Davidia involucrata HOM05D000509 ORTHO05D006393 7.3e-31 137.5 116 66.4
CSS0014005 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 8.1e-30 134.0 116 70.7
Manes.10G122200 Manihot esculenta HOM05D000509 ORTHO05D006393 1.7e-27 126.3 119 68.1
Actinidia33421 Actinidia chinensis HOM05D001542 ORTHO05D001416 6.4e-27 124.4 115 65.2
Thecc.04G199400 Theobroma cacao HOM05D000509 ORTHO05D006393 5.1e-24 114.8 116 55.2
Manes.07G019100 Manihot esculenta HOM05D000509 ORTHO05D006393 6.6e-24 114.4 120 65.0
GSVIVG01008341001 Vitis vinifera HOM05D000509 ORTHO05D006393 8.6e-24 114.0 120 59.2
Duzib151G0093 Durio zibethinus HOM05D000509 ORTHO05D006393 1.9e-23 112.8 116 59.5
TWI14G0500 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 2.5e-23 112.5 116 56.9
Sabra02G0116600 Salix brachista HOM05D000509 ORTHO05D006393 1.1e-21 107.1 121 54.5
EL10Ac8g20190 Beta vulgaris HOM05D000509 ORTHO05D006393 2.4e-21 105.9 116 59.5
CiPaw.02G030900 Carya illinoinensis HOM05D000509 ORTHO05D006393 2.4e-21 105.9 117 53.0
QL08p048801 Quercus lobata HOM05D000509 ORTHO05D006393 2.4e-21 105.9 124 56.5
CiPaw.01G061300 Carya illinoinensis HOM05D000509 ORTHO05D006393 4.0e-21 105.1 117 55.6
Aqoxy2G02281 Aquilegia oxysepala HOM05D000509 ORTHO05D006393 1.2e-20 103.6 116 51.7
Gorai.005G030400 Gossypium raimondii HOM05D000509 ORTHO05D006393 2.0e-20 102.8 116 52.6
Potri.016G069200 Populus trichocarpa HOM05D000509 ORTHO05D006393 2.0e-20 102.8 121 52.9
TAR636G2420 Trochodendron aralioides HOM05D000509 ORTHO05D006393 2.0e-20 102.8 115 60.0
Gohir.A02G020500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 2.6e-20 102.4 116 51.7
Gohir.A08G013720 Gossypium hirsutum HOM05D000509 ORTHO05D006393 2.6e-20 102.4 116 51.7
Gohir.D02G024500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 2.6e-20 102.4 116 51.7
Ca_07920_v3 Cicer arietinum L. HOM05D000509 ORTHO05D006393 3.4e-20 102.1 117 53.0
Nn6g33420 Nelumbo nucifera HOM05D000509 ORTHO05D006393 4.4e-20 101.7 122 55.7
MBI17_g24690_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 9.9e-20 100.5 116 50.9
MSTRG.20833 Avicennia marina HOM05D000509 ORTHO05D006393 3.8e-19 98.6 117 50.4
Cpa.g.sc11.3 Carica papaya HOM05D000509 ORTHO05D006393 3.8e-19 98.6 115 52.2
Ah.04g163760 Amaranthus hybridus HOM05D000509 ORTHO05D006393 4.9e-19 98.2 115 52.2
EL10Ac4g09051 Beta vulgaris HOM05D000509 ORTHO05D006393 6.4e-19 97.8 116 50.0
Lsat_1_v5_gn_8_97941 Lactuca sativa HOM05D002211 ORTHO05D002206 6.4e-19 97.8 110 50.0
QL93p0259_0027 Quercus lobata HOM05D000509 ORTHO05D006393 6.4e-19 97.8 116 50.0
Haze_15506 Corylus avellana HOM05D000509 ORTHO05D006393 1.4e-18 96.7 102 51.0
DCAR_019105 Daucus carota HOM05D000509 ORTHO05D006393 1.9e-18 96.3 120 47.5
Eucgr.B00880 Eucalyptus grandis HOM05D000509 ORTHO05D006393 1.9e-18 96.3 121 48.8
TWI23G0635 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 4.2e-18 95.1 121 50.4
Cfa003925 Carpinus fangiana HOM05D000509 ORTHO05D006393 5.4e-18 94.7 102 52.0
QL01p005382 Quercus lobata HOM05D000509 ORTHO05D006393 5.4e-18 94.7 116 49.1
Ciclev10022504m.g Citrus clementina HOM05D000509 ORTHO05D006393 7.1e-18 94.4 95 54.7
Eucgr.B00993 Eucalyptus grandis HOM05D000509 ORTHO05D006393 7.1e-18 94.4 123 49.6
PGR042G3203 Punica granatum HOM05D000509 ORTHO05D006393 7.1e-18 94.4 123 48.8
VMungo0540G0837 Vigna mungo HOM05D000509 ORTHO05D006393 7.1e-18 94.4 117 50.4
QL10p007195 Quercus lobata HOM05D000509 ORTHO05D006393 1.6e-17 93.2 81 58.0
VMungo1383G0114 Vigna mungo HOM05D000509 ORTHO05D006393 1.6e-17 93.2 117 49.6
Nitab4.5_0000583g0080 Nicotiana tabacum HOM05D000509 ORTHO05D006393 7.8e-17 90.9 118 47.5
Glyma.18G233000 Glycine max HOM05D000509 ORTHO05D006393 1.0e-16 90.5 117 48.7
Lalb_Chr03g0038131 Lupinus albus HOM05D000509 ORTHO05D006393 1.7e-16 89.7 116 48.3
MBI17_g24691_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 2.3e-16 89.4 100 49.0
AUR62004883 Chenopodium quinoa HOM05D000509 ORTHO05D006393 3.0e-16 89.0 116 48.3
Psat3g108360 Pisum sativum HOM05D000509 ORTHO05D006393 5.1e-16 88.2 120 50.8
TPR.G37720 Trifolium pratense HOM05D000509 ORTHO05D006393 5.1e-16 88.2 118 49.2
Phvul.008G062400 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 6.6e-16 87.8 117 48.7
MD07G1137000 Malus domestica HOM05D000509 ORTHO05D006393 3.3e-15 85.5 117 44.4
GSVIVG01003391001 Vitis vinifera HOM05D000509 ORTHO05D006393 3.3e-15 85.5 109 55.0
Nitab4.5_0006762g0030 Nicotiana tabacum HOM05D000509 ORTHO05D006393 4.3e-15 85.1 126 45.2
Phvul.008G065500 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 4.3e-15 85.1 117 47.0
Eucgr.L01454 Eucalyptus grandis HOM05D000509 ORTHO05D006393 7.3e-15 84.3 108 48.1
Medtr8g095630 Medicago truncatula HOM05D000509 ORTHO05D006393 1.3e-14 83.6 117 46.2
arahy.Tifrunner.gnm1.ann1.NYL5F5 Arachis hypogaea HOM05D000509 ORTHO05D006393 1.6e-14 83.2 118 44.9
SGA_v2.0_scaffold95G28834 Striga asiatica HOM05D000509 ORTHO05D006393 1.6e-14 83.2 123 44.7
arahy.Tifrunner.gnm1.ann1.E8SAKG Arachis hypogaea HOM05D000509 ORTHO05D006393 2.8e-14 82.4 118 44.9
ECA233G2837 Erigeron canadensis HOM05D000509 ORTHO05D006393 2.8e-14 82.4 121 47.1
SalBow6G4776 Salvia bowleyana HOM05D000509 ORTHO05D006393 3.6e-14 82.0 121 43.0
Lj1g0015308 Lotus japonicus HOM05D000509 ORTHO05D006393 6.2e-14 81.3 122 48.4
Hund14886 Selenicereus undatus HOM05D000509 ORTHO05D006393 8.1e-14 80.9 119 47.1
CANSAT56G2260 Cannabis sativa HOM05D000509 ORTHO05D006393 1.4e-13 80.1 130 46.2
Prupe.2G170600 Prunus persica HOM05D000509 ORTHO05D006393 1.4e-13 80.1 117 43.6
HanXRQChr09g0257651 Helianthus annuus HOM05D000509 ORTHO05D006393 1.8e-13 79.7 109 49.5
unitig_0.g1262 Utricularia gibba HOM05D000509 ORTHO05D006393 4.0e-13 78.6 119 42.9
Cc02_g38030 Coffea canephora HOM05D000509 ORTHO05D006393 5.3e-13 78.2 121 44.6
MD01G1060700 Malus domestica HOM05D000509 ORTHO05D006393 9.0e-13 77.4 117 47.9
CAN.G78.80 Capsicum annuum HOM05D000509 ORTHO05D006393 1.5e-12 76.6 120 43.3
CDE09G0401 Ceratophyllum demersum HOM05D000509 ORTHO05D006393 2.0e-12 76.3 116 41.4
PGSC0003DMG400000042 Solanum tuberosum HOM05D000509 ORTHO05D006393 2.0e-12 76.3 119 42.0
COL.COLO4_20186 Corchorus olitorius HOM05D000509 ORTHO05D006393 2.6e-12 75.9 153 39.9
Prupe.1G174800 Prunus persica HOM05D000509 ORTHO05D006393 2.6e-12 75.9 116 48.3
QL11p053603 Quercus lobata HOM05D000509 ORTHO05D006393 2.6e-12 75.9 72 54.2
FAN06G1484 Fragaria x ananassa HOM05D000509 ORTHO05D006393 3.4e-12 75.5 122 43.4
FAN06G3105 Fragaria x ananassa HOM05D000509 ORTHO05D006393 3.4e-12 75.5 122 43.4
PSO782G0796 Papaver somniferum HOM05D000509 ORTHO05D006393 4.4e-12 75.1 118 50.0
Medtr7g077710 Medicago truncatula HOM05D000509 ORTHO05D006393 5.8e-12 74.7 75 52.0
Ah.12g064210 Amaranthus hybridus HOM05D000509 ORTHO05D006393 1.3e-11 73.6 96 49.0
ClCG06G003680 Citrullus lanatus HOM05D000509 ORTHO05D006393 1.3e-11 73.6 80 50.0
THA.LOC104798540 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 1.3e-11 73.6 116 44.0
C08p36230 Brassica napus HOM05D000509 ORTHO05D006393 3.8e-11 72.0 74 47.3
BolC8t51205H Brassica oleracea HOM05D000509 ORTHO05D006393 3.8e-11 72.0 74 47.3
FvH4_7g14280 Fragaria vesca HOM05D000509 ORTHO05D006393 3.8e-11 72.0 130 43.1
Sed0001004 Sechium edule HOM05D000509 ORTHO05D006393 6.4e-11 71.2 125 44.0
CsaV3_6G000560 Cucumis sativus L. HOM05D000509 ORTHO05D006393 8.4e-11 70.9 125 47.2
Solyc01g094630.3 Solanum lycopersicum HOM05D000509 ORTHO05D006393 1.1e-10 70.5 119 41.2
Aqoxy7G00306 Aquilegia oxysepala HOM05D000509 ORTHO05D006393 1.9e-10 69.7 109 42.2
THA.LOC104820589 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 1.9e-10 69.7 114 40.4
AUR62001076 Chenopodium quinoa HOM05D000509 ORTHO05D006393 2.4e-10 69.3 61 55.7
MELO3C021209.2 Cucumis melo HOM05D000509 ORTHO05D006393 2.4e-10 69.3 125 46.4
DCAR_015993 Daucus carota HOM05D000509 ORTHO05D006393 2.4e-10 69.3 94 46.8
Aa31LG5G5170 Aethionema arabicum HOM05D000509 ORTHO05D006393 4.2e-10 68.6 108 45.4
RcHm_v2.0_Chr1g0355271 Rosa chinensis HOM05D000509 ORTHO05D006393 5.4e-10 68.2 130 44.6
Sopen01g038440 Solanum pennellii HOM05D000509 ORTHO05D006393 5.4e-10 68.2 119 41.2
Aa31LG1G27330 Aethionema arabicum HOM05D000509 ORTHO05D006393 7.1e-10 67.8 61 54.1
FAN10G1528 Fragaria x ananassa HOM05D000509 ORTHO05D006393 7.1e-10 67.8 130 44.6
FAN10G1645 Fragaria x ananassa HOM05D000509 ORTHO05D006393 7.1e-10 67.8 130 44.6
Glyma.09G259300 Glycine max HOM05D000509 ORTHO05D006393 9.3e-10 67.4 66 51.5
Peaxi162Scf00020g00322 Petunia axillaris HOM05D000509 ORTHO05D006393 9.3e-10 67.4 81 48.1
AT3G61370 Arabidopsis thaliana HOM05D000509 ORTHO05D006393 1.2e-09 67.0 74 45.9
Thhalv10006311m.g Eutrema salsugineum HOM05D000509 ORTHO05D006393 2.1e-09 66.2 66 47.0
PSO478G1119 Papaver somniferum HOM05D000509 ORTHO05D006393 2.7e-09 65.9 62 54.8
FAN03G2840 Fragaria x ananassa HOM05D000509 ORTHO05D006393 4.6e-09 65.1 130 43.1
A09p53420 Brassica napus HOM05D000509 ORTHO05D006393 6.0e-09 64.7 64 46.9
BraA09t40768Z Brassica rapa HOM05D000509 ORTHO05D006393 6.0e-09 64.7 64 46.9
CARHR171710 Cardamine hirsuta HOM05D000509 ORTHO05D006393 1.3e-08 63.5 61 50.8
Atru.chr5.498 Acer truncatum HOM05D000509 ORTHO05D006393 3.9e-08 62.0 52 59.6
Sp5g02030 Schrenkiella parvula HOM05D000509 ORTHO05D006393 6.6e-08 61.2 72 45.8
Os08g0559700 Oryza sativa ssp. japonica HOM05D000509 ORTHO05D006393 1.1e-07 60.5 118 37.3
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 2.5e-07 59.3 133 33.1
A04p01140 Brassica napus HOM05D000509 ORTHO05D006393 3.3e-07 58.9 100 46.0
BraA04t15830Z Brassica rapa HOM05D000509 ORTHO05D006393 3.3e-07 58.9 100 46.0
Zm00001eb039300 Zea mays HOM05D000509 ORTHO05D006393 7.3e-07 57.8 117 38.5
Potri.006G202400 Populus trichocarpa HOM05D000509 ORTHO05D006393 1.6e-06 56.6 91 45.1
ATR0680G086 Amborella trichopoda HOM05D000509 ORTHO05D006393 2.1e-06 56.2 99 35.4
Medtr8g095650 Medicago truncatula HOM05D000509 ORTHO05D006393 3.6e-06 55.5 91 44.0
BcaC02g10220 Brassica carinata HOM05D000509 ORTHO05D006393 6.2e-06 54.7 61 50.8
C04p31370 Brassica napus HOM05D000509 ORTHO05D006393 6.2e-06 54.7 61 50.8
BolC4t24686H Brassica oleracea HOM05D000509 ORTHO05D006393 8.1e-06 54.3 62 51.6
Migut.B01755 Erythranthe guttata HOM05D000509 ORTHO05D006393 8.1e-06 54.3 103 42.7


User provided reference genes

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