Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 2.6e-71 271.9 137 100.0
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 1.1e-58 229.9 151 79.5
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 1.5e-58 229.6 148 80.4
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 5.6e-58 227.6 161 75.2
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 1.1e-56 223.4 151 75.5
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 1.8e-56 222.6 148 77.7
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 3.1e-56 221.9 150 75.3
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 6.9e-56 220.7 148 77.0
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 9.0e-56 220.3 148 76.4
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 9.0e-56 220.3 148 77.0
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 1.2e-55 219.9 148 77.0
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 1.5e-55 219.5 150 76.0
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 1.5e-55 219.5 148 75.7
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 2.6e-55 218.8 148 76.4
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 2.6e-55 218.8 147 76.2
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 2.6e-55 218.8 151 75.5
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 3.4e-55 218.4 148 76.4
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 4.5e-55 218.0 148 76.4
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 5.8e-55 217.6 148 75.7
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 5.8e-55 217.6 150 76.0
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 5.8e-55 217.6 148 75.7
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 7.6e-55 217.2 151 74.2
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 7.6e-55 217.2 143 78.3
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 1.0e-54 216.9 148 75.0
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 1.0e-54 216.9 148 75.7
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 1.0e-54 216.9 148 76.4
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 1.3e-54 216.5 148 75.0
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 1.3e-54 216.5 150 75.3
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 1.7e-54 216.1 148 76.4
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 1.7e-54 216.1 148 75.0
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 2.9e-54 215.3 148 74.3
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 2.9e-54 215.3 148 75.7
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 3.8e-54 214.9 151 73.5
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 4.9e-54 214.5 148 73.6
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 6.5e-54 214.2 148 74.3
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 6.5e-54 214.2 148 74.3
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 6.5e-54 214.2 148 75.7
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 8.4e-54 213.8 151 72.8
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 1.1e-53 213.4 148 74.3
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 1.1e-53 213.4 148 74.3
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 1.4e-53 213.0 150 74.0
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.4e-53 213.0 148 74.3
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 1.9e-53 212.6 148 75.0
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 1.9e-53 212.6 148 75.0
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 1.9e-53 212.6 148 73.6
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 2.5e-53 212.2 148 73.6
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 2.5e-53 212.2 148 73.6
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 2.5e-53 212.2 148 74.3
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 2.5e-53 212.2 145 75.9
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 2.5e-53 212.2 148 75.0
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 3.2e-53 211.8 148 73.0
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 3.2e-53 211.8 148 73.0
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 3.2e-53 211.8 148 74.3
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 4.2e-53 211.5 148 74.3
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 4.2e-53 211.5 148 75.0
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 4.2e-53 211.5 144 76.4
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 5.5e-53 211.1 148 73.6
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 5.5e-53 211.1 148 73.0
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 7.1e-53 210.7 148 73.0
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 9.3e-53 210.3 148 73.0
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 9.3e-53 210.3 148 74.3
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 9.3e-53 210.3 148 73.6
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 9.3e-53 210.3 148 73.0
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 1.2e-52 209.9 148 72.3
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 1.2e-52 209.9 148 73.6
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 1.2e-52 209.9 148 73.6
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.2e-52 209.9 148 73.6
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 1.2e-52 209.9 148 74.3
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 1.2e-52 209.9 148 72.3
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 2.1e-52 209.1 148 73.0
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 2.1e-52 209.1 148 73.0
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 2.7e-52 208.8 148 73.0
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 3.5e-52 208.4 148 73.6
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 3.5e-52 208.4 148 73.0
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 4.6e-52 208.0 148 72.3
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 6.0e-52 207.6 148 73.0
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 6.0e-52 207.6 148 71.6
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 1.0e-51 206.8 147 72.1
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 1.0e-51 206.8 147 72.1
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 1.8e-51 206.1 147 72.1
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 1.8e-51 206.1 148 72.3
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 1.8e-51 206.1 148 72.3
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 1.8e-51 206.1 147 74.1
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 2.3e-51 205.7 145 73.8
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 3.0e-51 205.3 148 71.6
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 3.0e-51 205.3 152 70.4
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 3.0e-51 205.3 148 71.6
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 3.0e-51 205.3 175 63.4
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 5.1e-51 204.5 148 70.9
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 6.7e-51 204.1 148 73.0
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 1.5e-50 203.0 147 72.8
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 2.5e-50 202.2 147 70.1
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 3.3e-50 201.8 147 72.1
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 3.3e-50 201.8 147 72.1
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 3.3e-50 201.8 148 69.6
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 3.3e-50 201.8 147 72.1
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 4.3e-50 201.4 147 72.1
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 5.7e-50 201.1 142 73.2
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 7.4e-50 200.7 148 71.6
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 7.4e-50 200.7 147 70.1
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 7.4e-50 200.7 145 73.1
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 9.7e-50 200.3 148 71.6
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 9.7e-50 200.3 147 71.4
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 9.7e-50 200.3 147 71.4
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 9.7e-50 200.3 147 71.4
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 9.7e-50 200.3 147 71.4
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 9.7e-50 200.3 148 71.6
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 1.6e-49 199.5 148 70.9
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 3.7e-49 198.4 148 70.9
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 4.8e-49 198.0 147 71.4
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 4.8e-49 198.0 147 71.4
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 4.8e-49 198.0 168 63.7
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 6.3e-49 197.6 140 73.6
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 1.1e-48 196.8 147 68.7
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 1.8e-48 196.1 147 71.4
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 3.1e-48 195.3 145 71.7
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 4.1e-48 194.9 155 65.8
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 6.9e-48 194.1 134 76.1
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 2.0e-47 192.6 134 75.4
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 3.4e-47 191.8 203 54.7
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 1.3e-46 189.9 145 64.8
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 2.1e-44 182.6 146 62.3
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 2.7e-44 182.2 148 66.2
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 2.3e-43 179.1 146 63.0
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 1.7e-41 172.9 146 60.3
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 3.1e-40 168.7 140 60.7
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 1.5e-34 149.8 140 55.0
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 8.0e-28 127.5 68 86.8
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.0e-27 127.1 68 86.8
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 1.0e-27 127.1 95 69.5
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 1.8e-27 126.3 68 86.8
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 2.3e-27 125.9 136 47.8
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 6.7e-27 124.4 134 53.0
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 8.8e-27 124.0 141 48.2
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 1.5e-26 123.2 95 69.5
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 7.7e-23 110.9 55 92.7
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 2.2e-22 109.4 82 63.4
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 8.5e-22 107.5 55 92.7
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 1.2e-20 103.6 97 59.8
SalBow4G1426 Salvia bowleyana HOM05D000195 ORTHO05D000377 3.0e-19 99.0 61 82.0
RcHm_v2.0_Chr7g0182561 Rosa chinensis HOM05D004399 ORTHO05D005303 6.8e-19 97.8 62 79.0
ATR1120G192 Amborella trichopoda HOM05D004399 ORTHO05D005303 1.2e-18 97.1 61 77.0
Phvul.007G165450 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 3.7e-17 92.0 64 75.0
TPR.G35682 Trifolium pratense HOM05D004399 ORTHO05D005303 6.3e-17 91.3 60 75.0
Actinidia12918 Actinidia chinensis HOM05D004399 ORTHO05D005303 4.1e-16 88.6 47 85.1
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.2e-15 87.0 74 60.8
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 5.9e-15 84.7 47 83.0
FAN08G1770 Fragaria x ananassa HOM05D004399 ORTHO05D005303 6.5e-14 81.3 111 45.9
Glyma.07G066400 Glycine max HOM05D004399 ORTHO05D005303 1.5e-13 80.1 54 75.9
BcaB07g30659 Brassica carinata HOM05D004399 ORTHO05D005303 5.5e-13 78.2 52 71.2
Phvul.007G165400 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 9.4e-13 77.4 39 87.2
Cfa024149 Carpinus fangiana HOM05D004399 ORTHO05D005303 1.2e-12 77.0 137 36.5
Glyma.02G119500 Glycine max HOM05D004399 ORTHO05D005303 2.1e-12 76.3 41 80.5
SEGI_28424 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 2.7e-12 75.9 51 74.5
TPR.G30910 Trifolium pratense HOM05D004399 ORTHO05D005303 8.0e-12 74.3 42 81.0
Nn4g23036 Nelumbo nucifera HOM05D004399 ORTHO05D005303 2.2e-09 66.2 51 62.7
SalBow4G0663 Salvia bowleyana HOM05D000195 ORTHO05D000377 3.5e-07 58.9 33 84.8


User provided reference genes

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