Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro20916 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 1.4e-96 356.3 182 100.0
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 2.2e-81 305.8 182 85.7
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 3.1e-72 275.4 182 75.8
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 2.1e-68 262.7 182 75.8
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 4.7e-68 261.5 176 75.6
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 1.1e-61 240.4 177 68.4
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 2.5e-61 239.2 176 69.9
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 5.6e-61 238.0 177 68.4
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 1.2e-60 236.9 176 68.2
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 2.8e-60 235.7 176 70.5
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 2.8e-60 235.7 176 69.9
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 2.8e-60 235.7 176 69.9
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 1.5e-58 229.9 174 67.2
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 2.6e-58 229.2 176 65.9
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 3.4e-58 228.8 184 59.8
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 5.7e-58 228.0 177 67.8
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 7.5e-58 227.6 176 67.0
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 1.7e-57 226.5 176 66.5
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 2.9e-57 225.7 175 64.6
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 8.3e-57 224.2 215 58.6
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 8.3e-57 224.2 176 68.2
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 1.1e-56 223.8 178 66.9
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 1.8e-56 223.0 176 65.9
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 2.4e-56 222.6 179 64.2
DCAR_008618 Daucus carota HOM05D004502 ORTHO05D005579 3.2e-56 222.2 176 63.6
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 7.0e-56 221.1 176 63.1
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 7.0e-56 221.1 176 65.9
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 7.0e-56 221.1 175 62.9
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 7.0e-56 221.1 176 63.1
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 9.2e-56 220.7 178 62.4
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 1.2e-55 220.3 175 63.4
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 1.2e-55 220.3 176 64.8
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 2.0e-55 219.5 175 64.6
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 2.0e-55 219.5 173 65.9
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 2.7e-55 219.2 176 64.2
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 3.5e-55 218.8 178 65.2
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 4.6e-55 218.4 174 66.7
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 4.6e-55 218.4 176 65.3
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 4.6e-55 218.4 177 65.5
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 7.8e-55 217.6 178 65.2
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 1.0e-54 217.2 177 63.8
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 1.0e-54 217.2 177 64.4
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 1.3e-54 216.9 176 61.9
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 1.3e-54 216.9 178 60.7
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 1.7e-54 216.5 187 61.0
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 1.7e-54 216.5 175 61.1
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 2.3e-54 216.1 175 59.4
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 2.3e-54 216.1 178 62.4
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 3.0e-54 215.7 178 60.7
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 6.6e-54 214.5 177 64.4
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 6.6e-54 214.5 163 62.6
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 8.6e-54 214.2 173 63.6
Glyma.16G034551 Glycine max HOM05D004502 ORTHO05D005579 8.6e-54 214.2 177 63.3
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 1.1e-53 213.8 175 60.6
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 1.5e-53 213.4 175 61.1
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 4.3e-53 211.8 176 62.5
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 5.6e-53 211.5 175 61.7
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 5.6e-53 211.5 178 60.1
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 7.3e-53 211.1 174 63.8
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 9.5e-53 210.7 176 61.9
MD01G1067000 Malus domestica HOM05D004502 ORTHO05D005579 9.5e-53 210.7 179 61.5
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 1.6e-52 209.9 176 63.6
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 1.6e-52 209.9 176 61.9
Gohir.A08G131800 Gossypium hirsutum HOM05D004502 ORTHO05D005579 2.8e-52 209.1 176 61.9
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 4.7e-52 208.4 178 58.4
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 6.2e-52 208.0 175 58.3
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.0e-51 207.2 180 60.6
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 1.8e-51 206.5 185 58.4
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 5.2e-51 204.9 158 63.3
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 5.2e-51 204.9 178 59.6
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 5.2e-51 204.9 180 60.0
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 6.8e-51 204.5 187 57.2
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 6.8e-51 204.5 187 57.2
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 1.5e-50 203.4 184 57.6
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 2.6e-50 202.6 177 61.0
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 2.6e-50 202.6 187 57.2
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 7.5e-50 201.1 187 56.1
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 1.3e-49 200.3 182 55.5
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.7e-49 199.9 187 56.7
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 2.9e-49 199.1 178 57.3
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 2.9e-49 199.1 177 59.9
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 3.7e-49 198.7 176 59.7
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 4.9e-49 198.4 178 59.0
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 1.9e-48 196.4 167 63.5
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.4e-48 196.1 187 56.1
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 1.2e-47 193.7 177 57.6
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 1.2e-47 193.7 177 57.1
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 1.2e-47 193.7 176 55.7
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 1.6e-47 193.4 176 59.7
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 4.6e-47 191.8 176 58.0
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 6.0e-47 191.4 176 57.4
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 1.0e-46 190.7 177 57.1
unitig_26.g9298 Utricularia gibba HOM05D004502 ORTHO05D005579 1.7e-46 189.9 184 53.8
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 3.9e-46 188.7 177 57.6
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 5.0e-46 188.3 177 57.1
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 1.5e-45 186.8 177 55.9
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 2.5e-45 186.0 177 55.9
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 2.8e-44 182.6 176 55.1
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 3.6e-44 182.2 205 48.3
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 6.2e-44 181.4 230 46.1
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 8.1e-44 181.0 184 53.3
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 6.8e-43 177.9 177 53.1
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 1.5e-42 176.8 177 52.5
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 3.4e-42 175.6 177 52.5
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 4.4e-42 175.3 177 52.5
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 6.4e-41 171.4 177 50.8
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 1.1e-40 170.6 177 50.3
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 1.1e-40 170.6 177 50.3
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 1.4e-40 170.2 177 50.3
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 4.1e-40 168.7 210 46.2
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 4.6e-39 165.2 176 48.9
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.0e-38 164.1 176 53.4
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 1.3e-38 163.7 177 50.8
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 6.6e-38 161.4 181 48.6
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 1.1e-37 160.6 132 62.1
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 1.1e-37 160.6 132 65.2
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 1.8e-35 153.3 174 47.1
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 3.4e-34 149.1 186 47.3
Cc08_g14990 Coffea canephora HOM05D004502 ORTHO05D005579 4.4e-34 148.7 169 47.9
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 7.6e-34 147.9 171 45.0
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 7.8e-31 137.9 136 54.4
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 5.8e-26 121.7 118 58.5
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 2.9e-25 119.4 150 46.0
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 1.3e-20 104.0 164 37.8
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 4.5e-18 95.5 161 34.8
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 3.2e-16 89.4 82 62.2
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 9.3e-16 87.8 82 57.3
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 3.5e-15 85.9 172 32.6
SEGI_31877 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 2.4e-11 73.2 54 53.7
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 9.0e-11 71.2 65 58.5
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 9.3e-08 61.2 44 63.6
Hund14846 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.2e-07 60.8 42 52.4
CBR_g17143 Chara braunii HOM05D004502 ORTHO05D005579 6.0e-07 58.5 131 30.5
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 8.7e-06 54.7 174 28.7


User provided reference genes

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