Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro20845 Vaccinium macrocarpon HOM05D004210 ORTHO05D005017 1.1e-303 1045.8 523 100.0
Rhsim04G0193600 Rhododendron simsii HOM05D004210 ORTHO05D005017 7.2e-287 989.9 523 94.1
Dinv04121 Davidia involucrata HOM05D004210 ORTHO05D005017 4.7e-262 907.5 516 86.0
Actinidia18370 Actinidia chinensis HOM05D004210 ORTHO05D005017 6.3e-251 870.5 516 83.5
CSS0018495 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 1.5e-244 849.4 516 82.2
CiPaw.14G037100 Carya illinoinensis HOM05D004210 ORTHO05D005017 4.4e-244 847.8 516 80.2
Lj8A287G21 Lonicera japonica HOM05D004210 ORTHO05D005017 1.4e-242 842.8 515 80.4
Haze_03415 Corylus avellana HOM05D004210 ORTHO05D005017 2.4e-242 842.0 516 79.8
Cc08_g06030 Coffea canephora HOM05D004210 ORTHO05D005017 1.2e-241 839.7 516 79.1
RcHm_v2.0_Chr6g0268021 Rosa chinensis HOM05D004210 ORTHO05D005017 1.0e-240 836.6 520 79.2
FvH4_2g10510 Fragaria vesca HOM05D004210 ORTHO05D005017 8.6e-240 833.6 520 79.0
CANSAT56G1750 Cannabis sativa HOM05D004210 ORTHO05D005017 1.5e-239 832.8 516 79.3
Prupe.5G058900 Prunus persica HOM05D004210 ORTHO05D005017 1.5e-239 832.8 516 80.8
Potri.019G000900 Populus trichocarpa HOM05D004210 ORTHO05D005017 3.3e-239 831.6 516 79.3
TAR376G0596 Trochodendron aralioides HOM05D004210 ORTHO05D005017 5.6e-239 830.9 517 79.3
Cpa.g.sc138.49 Carica papaya HOM05D004210 ORTHO05D005017 7.3e-239 830.5 516 79.1
FAN24G2713 Fragaria x ananassa HOM05D004210 ORTHO05D005017 7.3e-239 830.5 520 78.8
Nn5g30473 Nelumbo nucifera HOM05D004210 ORTHO05D005017 9.5e-239 830.1 516 77.7
MD07G1061200 Malus domestica HOM05D004210 ORTHO05D005017 1.2e-238 829.7 498 81.3
FAN15G0031 Fragaria x ananassa HOM05D004210 ORTHO05D005017 2.1e-238 828.9 520 78.7
Thecc.10G122400 Theobroma cacao HOM05D004210 ORTHO05D005017 1.0e-237 826.6 516 79.3
FAN20G0431 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.4e-237 826.2 520 78.5
FAN27G0821 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.4e-237 826.2 525 78.3
Manes.13G078700 Manihot esculenta HOM05D004210 ORTHO05D005017 2.3e-237 825.5 516 79.8
QL04p049870 Quercus lobata HOM05D004210 ORTHO05D005017 1.5e-236 822.8 481 83.2
Nitab4.5_0001611g0030 Nicotiana tabacum HOM05D004210 ORTHO05D005017 2.0e-236 822.4 521 78.7
Peaxi162Scf00647g00139 Petunia axillaris HOM05D004210 ORTHO05D005017 2.0e-236 822.4 516 79.1
Duzib114G0085 Durio zibethinus HOM05D004210 ORTHO05D005017 5.8e-236 820.8 516 79.1
COL.COLO4_16323 Corchorus olitorius HOM05D004210 ORTHO05D005017 7.5e-236 820.5 516 79.3
Potri.001G305500 Populus trichocarpa HOM05D004210 ORTHO05D005017 1.7e-235 819.3 516 79.3
ClCG05G022120 Citrullus lanatus HOM05D004210 ORTHO05D005017 2.2e-235 818.9 516 77.9
MSTRG.20468 Avicennia marina HOM05D004210 ORTHO05D005017 2.9e-235 818.5 518 78.6
MELO3C012312.2 Cucumis melo HOM05D004210 ORTHO05D005017 4.9e-235 817.8 516 77.5
Atru.chr10.436 Acer truncatum HOM05D004210 ORTHO05D005017 1.4e-234 816.2 516 78.5
CsaV3_5G035020 Cucumis sativus L. HOM05D004210 ORTHO05D005017 4.1e-234 814.7 516 77.5
MD02G1259400 Malus domestica HOM05D004210 ORTHO05D005017 4.1e-234 814.7 498 79.5
GSVIVG01018295001 Vitis vinifera HOM05D004210 ORTHO05D005017 9.2e-234 813.5 514 79.6
Nitab4.5_0004014g0070 Nicotiana tabacum HOM05D004210 ORTHO05D005017 1.2e-233 813.1 517 78.7
Sabra19G0014200 Salix brachista HOM05D004210 ORTHO05D005017 3.0e-232 808.5 529 75.6
Sabra19G0005800 Salix brachista HOM05D004210 ORTHO05D005017 6.6e-232 807.4 529 75.4
Ciclev10014800m.g Citrus clementina HOM05D004210 ORTHO05D005017 1.2e-230 803.1 516 76.7
Sabra16G0191800 Salix brachista HOM05D004210 ORTHO05D005017 1.8e-229 799.3 522 75.7
Sed0024731 Sechium edule HOM05D004210 ORTHO05D005017 2.3e-229 798.9 516 75.0
Glyma.06G315900 Glycine max HOM05D004210 ORTHO05D005017 4.0e-229 798.1 516 77.1
Glyma.13G124200 Glycine max HOM05D004210 ORTHO05D005017 4.0e-229 798.1 516 76.9
PGR142G1915 Punica granatum HOM05D004210 ORTHO05D005017 5.2e-229 797.7 516 76.2
SalBow4G0418 Salvia bowleyana HOM05D004210 ORTHO05D005017 2.6e-228 795.4 516 76.4
Sed0005167 Sechium edule HOM05D004210 ORTHO05D005017 5.8e-228 794.3 516 76.6
Migut.B01123 Erythranthe guttata HOM05D004210 ORTHO05D005017 9.8e-228 793.5 519 76.7
Sc18g0006930 Simmondsia chinensis HOM05D004210 ORTHO05D005017 4.9e-227 791.2 518 74.9
Oeu012473.1 Olea europaea HOM05D004210 ORTHO05D005017 7.1e-226 787.3 488 79.3
TAR625G1450 Trochodendron aralioides HOM05D004210 ORTHO05D005017 9.2e-226 786.9 513 76.0
Gohir.A13G003500 Gossypium hirsutum HOM05D004210 ORTHO05D005017 2.1e-225 785.8 519 75.7
ECA248G0690 Erigeron canadensis HOM05D004210 ORTHO05D005017 1.0e-224 783.5 518 74.3
Glyma.05G087400 Glycine max HOM05D004210 ORTHO05D005017 1.0e-224 783.5 516 75.6
TAR381G0930 Trochodendron aralioides HOM05D004210 ORTHO05D005017 1.3e-224 783.1 470 79.6
Hma1.2p1_0892F.1_g233380 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 2.3e-224 782.3 478 81.2
Gohir.D13G003400 Gossypium hirsutum HOM05D004210 ORTHO05D005017 3.0e-224 781.9 518 76.1
Lj3g0025560 Lotus japonicus HOM05D004210 ORTHO05D005017 3.0e-224 781.9 516 75.4
Gorai.013G003300 Gossypium raimondii HOM05D004210 ORTHO05D005017 5.1e-224 781.2 518 75.9
PGSC0003DMG400027522 Solanum tuberosum HOM05D004210 ORTHO05D005017 6.6e-224 780.8 516 75.2
Aqoxy1G00569 Aquilegia oxysepala HOM05D004210 ORTHO05D005017 1.5e-223 779.6 518 73.6
Phvul.008G161500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.9e-223 779.2 516 76.2
Sopen01g040660 Solanum pennellii HOM05D004210 ORTHO05D005017 1.9e-223 779.2 516 75.4
DCAR_002139 Daucus carota HOM05D004210 ORTHO05D005017 4.3e-223 778.1 516 73.4
Hund06390 Selenicereus undatus HOM05D004210 ORTHO05D005017 4.3e-223 778.1 517 74.7
Solyc01g096950.4 Solanum lycopersicum HOM05D004210 ORTHO05D005017 6.2e-222 774.2 516 75.2
arahy.Tifrunner.gnm1.ann1.374KBL Arachis hypogaea HOM05D004210 ORTHO05D005017 1.4e-221 773.1 516 74.8
Hund00055 Selenicereus undatus HOM05D004210 ORTHO05D005017 1.4e-221 773.1 596 67.1
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea HOM05D004210 ORTHO05D005017 3.1e-221 771.9 516 74.8
Lsat_1_v5_gn_4_138820 Lactuca sativa HOM05D004210 ORTHO05D005017 4.0e-221 771.5 520 76.0
TPR.G14605 Trifolium pratense HOM05D004210 ORTHO05D005017 6.8e-221 770.8 516 74.4
Glyma.08G229800 Glycine max HOM05D004210 ORTHO05D005017 9.9e-220 766.9 516 73.4
THA.LOC104804661 Tarenaya hassleriana HOM05D004210 ORTHO05D005017 1.3e-219 766.5 514 74.1
arahy.Tifrunner.gnm1.ann1.A6SQAT Arachis hypogaea HOM05D004210 ORTHO05D005017 6.4e-219 764.2 516 74.0
Phvul.003G276000 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.4e-218 763.1 516 73.4
PSO541G0139 Papaver somniferum HOM05D004210 ORTHO05D005017 3.2e-218 761.9 518 72.8
VMungo0251G3202 Vigna mungo HOM05D004210 ORTHO05D005017 6.0e-217 757.7 516 72.9
Carub.0003s2096 Capsella rubella HOM05D004210 ORTHO05D005017 7.8e-217 757.3 516 73.8
PSO478G0462 Papaver somniferum HOM05D004210 ORTHO05D005017 1.3e-216 756.5 518 72.8
TPR.G24022 Trifolium pratense HOM05D004210 ORTHO05D005017 1.3e-216 756.5 515 73.2
Aa31LG8G7780 Aethionema arabicum HOM05D004210 ORTHO05D005017 1.7e-216 756.1 514 73.3
Oeu027040.1 Olea europaea HOM05D004210 ORTHO05D005017 2.3e-216 755.7 464 80.0
Glyma.04G129500 Glycine max HOM05D004210 ORTHO05D005017 5.1e-216 754.6 486 76.7
Thhalv10020461m.g Eutrema salsugineum HOM05D004210 ORTHO05D005017 3.3e-215 751.9 514 72.6
Medtr8g041740 Medicago truncatula HOM05D004210 ORTHO05D005017 5.6e-215 751.1 516 72.5
Sp3g19020 Schrenkiella parvula HOM05D004210 ORTHO05D005017 5.6e-215 751.1 516 71.7
AUR62001320 Chenopodium quinoa HOM05D004210 ORTHO05D005017 1.6e-214 749.6 518 70.3
EL10Ac7g18124 Beta vulgaris HOM05D004210 ORTHO05D005017 6.2e-214 747.7 491 75.2
AUR62025703 Chenopodium quinoa HOM05D004210 ORTHO05D005017 6.2e-214 747.7 518 71.2
AT3G21060 Arabidopsis thaliana HOM05D004210 ORTHO05D005017 8.1e-214 747.3 516 73.1
Lalb_Chr01g0007661 Lupinus albus HOM05D004210 ORTHO05D005017 8.1e-214 747.3 516 73.1
HPP92_001742 Vanilla planifolia HOM05D004210 ORTHO05D005017 1.8e-213 746.1 517 71.2
Medtr8g045440 Medicago truncatula HOM05D004210 ORTHO05D005017 2.6e-212 742.3 516 71.7
Sabra19G0013500 Salix brachista HOM05D004210 ORTHO05D005017 4.4e-212 741.5 480 76.0
BraA01t03490Z Brassica rapa HOM05D004210 ORTHO05D005017 1.3e-211 740.0 516 71.7
Psat4g180480 Pisum sativum HOM05D004210 ORTHO05D005017 1.3e-211 740.0 518 72.0
C01p43210 Brassica napus HOM05D004210 ORTHO05D005017 1.7e-211 739.6 516 72.1
CDE04G1921 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 3.8e-211 738.4 517 71.2
CDE07G1685 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 3.8e-211 738.4 517 71.6
Sabra19G0006000 Salix brachista HOM05D004210 ORTHO05D005017 6.4e-211 737.6 480 75.8
BcaC09g49045 Brassica carinata HOM05D004210 ORTHO05D005017 1.4e-210 736.5 516 71.7
Duzib106G1791 Durio zibethinus HOM05D004210 ORTHO05D005017 1.4e-210 736.5 479 76.8
BolC1t04267H Brassica oleracea HOM05D004210 ORTHO05D005017 4.2e-210 734.9 516 71.5
BcaB04g20615 Brassica carinata HOM05D004210 ORTHO05D005017 3.9e-208 728.4 489 73.4
ATR0661G188 Amborella trichopoda HOM05D004210 ORTHO05D005017 1.5e-207 726.5 515 70.1
Ca_05576_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 9.6e-207 723.8 553 66.5
CARHR096890 Cardamine hirsuta HOM05D004210 ORTHO05D005017 4.8e-206 721.5 487 73.3
Psat4g200760 Pisum sativum HOM05D004210 ORTHO05D005017 1.8e-205 719.5 513 71.3
Medtr8g045463 Medicago truncatula HOM05D004210 ORTHO05D005017 4.5e-204 714.9 517 69.2
Medtr8g045470 Medicago truncatula HOM05D004210 ORTHO05D005017 4.5e-204 714.9 517 69.2
Lalb_Chr18g0049111 Lupinus albus HOM05D004210 ORTHO05D005017 2.9e-203 712.2 517 68.1
Manes.13G077346 Manihot esculenta HOM05D004210 ORTHO05D005017 8.4e-203 710.7 407 84.3
HanXRQChr09g0259631 Helianthus annuus HOM05D004210 ORTHO05D005017 9.3e-202 707.2 515 72.0
AL3G35010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 1.6e-198 696.4 516 69.8
VMungo0647G0038 Vigna mungo HOM05D004210 ORTHO05D005017 1.2e-196 690.3 481 73.0
SGA_v2.0_scaffold196G40978 Striga asiatica HOM05D004210 ORTHO05D005017 4.6e-193 678.3 529 66.0
A01p33790 Brassica napus HOM05D004210 ORTHO05D005017 5.3e-189 664.8 479 70.4
AL249U10010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 4.9e-187 658.3 403 77.4
Ca_13103_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 3.1e-181 639.0 530 63.8
Zm00001eb007220 Zea mays HOM05D004210 ORTHO05D005017 4.1e-181 638.6 519 62.8
Os03g0207900 Oryza sativa ssp. japonica HOM05D004210 ORTHO05D005017 5.3e-181 638.3 522 63.4
HanXRQChr14g0446551 Helianthus annuus HOM05D004210 ORTHO05D005017 1.1e-178 630.6 503 63.6
ECA238G3001 Erigeron canadensis HOM05D004210 ORTHO05D005017 2.1e-177 626.3 521 63.1
Psat2g059840 Pisum sativum HOM05D004210 ORTHO05D005017 1.4e-162 577.0 526 57.8
Dinv30359 Davidia involucrata HOM05D004210 ORTHO05D005017 2.2e-155 553.1 329 82.7
TWI75G1118 Tripterygium wilfordii HOM05D004210 ORTHO05D005017 2.2e-155 553.1 492 59.1
Eucgr.G02654 Eucalyptus grandis HOM05D004210 ORTHO05D005017 3.8e-155 552.4 391 70.6
Pp3c12_14420 Physcomitrium patens HOM05D004210 ORTHO05D005017 8.5e-155 551.2 521 55.9
Ca_24139_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 2.1e-153 546.6 516 58.5
Mapoly0028s0049 Marchantia polymorpha HOM05D004210 ORTHO05D005017 1.8e-152 543.5 529 55.6
Ca_24147_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 2.4e-141 506.5 366 71.0
Lalb_Chr03g0032281 Lupinus albus HOM05D004210 ORTHO05D005017 1.7e-139 500.4 421 63.7
AagrBONN_evm.TU.Sc2ySwM_344.4521 Anthoceros agrestis HOM05D004210 ORTHO05D005017 8.9e-136 488.0 549 48.5
Phvul.011G184500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 8.3e-134 481.5 468 56.0
CSS0025743 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 1.1e-133 481.1 390 67.7
unitig_26.g9497 Utricularia gibba HOM05D004210 ORTHO05D005017 2.7e-132 476.5 387 64.6
AagrBONN_evm.TU.Sc2ySwM_368.940 Anthoceros agrestis HOM05D004210 ORTHO05D005017 1.6e-129 467.2 532 48.3
SMO145G0186 Selaginella moellendorffii HOM05D004210 ORTHO05D005017 6.8e-128 461.8 518 49.2
CBR_g18561 Chara braunii HOM05D004210 ORTHO05D005017 1.2e-103 381.3 533 41.7
SEGI_20000 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 4.9e-102 375.9 307 57.7
CBR_g10843 Chara braunii HOM05D004210 ORTHO05D005017 1.3e-99 367.9 504 44.4
Dinv18710 Davidia involucrata HOM05D004210 ORTHO05D005017 2.4e-96 357.1 392 53.8
Dinv18720 Davidia involucrata HOM05D004210 ORTHO05D005017 1.2e-71 275.0 166 82.5
MBI16_g14436_MAGBIO Magnolia biondii HOM05D004210 ORTHO05D005017 1.8e-64 251.1 301 50.8
Cre03.g195750 Chlamydomonas reinhardtii HOM05D004210 ORTHO05D005017 1.6e-60 238.0 463 33.3
SEGI_15684 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 3.7e-57 226.9 219 58.9
Rhsim01G0121500 Rhododendron simsii HOM05D004210 ORTHO05D005017 4.1e-48 196.8 111 90.1
MCO03G571 Micromonas commoda HOM05D004210 ORTHO05D005017 9.1e-48 195.7 456 31.6
PRCOL_00000885 Prasinoderma coloniale HOM05D004210 ORTHO05D005017 7.7e-47 192.6 494 30.8
Pp3c4_7580 Physcomitrium patens HOM05D004210 ORTHO05D005017 1.7e-46 191.4 384 35.9
Atru.chr12.1163 Acer truncatum HOM05D004210 ORTHO05D005017 3.2e-45 187.2 91 94.5
Glyma.12G171232 Glycine max HOM05D004210 ORTHO05D013328 8.8e-43 179.1 97 84.5
Cfa023087 Carpinus fangiana HOM05D004210 ORTHO05D005017 2.4e-40 171.0 410 30.0
Dinv18721 Davidia involucrata HOM05D004210 ORTHO05D005017 9.1e-40 169.1 158 59.5
Aa31LG8G7760 Aethionema arabicum HOM05D004210 ORTHO05D005017 1.2e-39 168.7 118 70.3
VMungo1127G1364 Vigna mungo HOM05D004210 ORTHO05D005017 5.5e-37 159.8 170 50.6
Manes.13G077544 Manihot esculenta HOM05D004210 ORTHO05D005017 2.4e-32 144.4 125 67.2
Atru.chr12.1162 Acer truncatum HOM05D004210 ORTHO05D005017 1.7e-30 138.3 114 65.8
Medtr5g069620 Medicago truncatula HOM05D004210 ORTHO05D005017 7.7e-23 112.8 86 61.6
Nn1g02745 Nelumbo nucifera HOM05D000508 ORTHO05D000371 2.8e-20 104.4 163 39.9
Hma1.2p1_0892F.1_g233370 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 2.7e-15 87.8 40 97.5
unitig_26.g9496 Utricularia gibba HOM05D004210 ORTHO05D005017 1.9e-13 81.6 48 77.1
Nn1g04650 Nelumbo nucifera HOM05D004210 ORTHO05D005017 4.3e-13 80.5 40 87.5
Lalb_Chr03g0032271 Lupinus albus HOM05D004210 ORTHO05D005017 1.3e-09 68.9 32 93.8
SHI06412 Sapria himalayana HOM05D004210 ORTHO05D000023 1.7e-09 68.6 33 87.9
A02p32000 Brassica napus HOM05D000992 ORTHO05D001928 5.0e-06 57.0 247 24.7
BraA02t08211Z Brassica rapa HOM05D000992 ORTHO05D001928 5.0e-06 57.0 247 24.7


User provided reference genes

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