Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro20740 Vaccinium macrocarpon HOM05D007503 ORTHO05D009487 8.8e-34 146.4 73 100.0
Rhsim01G0105600 Rhododendron simsii HOM05D007503 ORTHO05D009487 1.8e-31 138.7 73 93.2
Actinidia06811 Actinidia chinensis HOM05D007503 ORTHO05D009487 2.0e-30 135.2 73 90.4
Hma1.2p1_0123F.1_g057900 Hydrangea macrophylla HOM05D007503 ORTHO05D009487 2.6e-25 118.2 67 85.1
GSVIVG01010020001 Vitis vinifera HOM05D007503 ORTHO05D009487 3.4e-25 117.9 66 86.4
Dinv06977 Davidia involucrata HOM05D007503 ORTHO05D009487 1.7e-24 115.5 71 84.5
Cc09_g03530 Coffea canephora HOM05D007503 ORTHO05D009487 4.1e-23 110.9 74 77.0
HanXRQChr02g0039651 Helianthus annuus HOM05D007503 ORTHO05D009487 4.1e-23 110.9 71 80.3
Haze_14049 Corylus avellana HOM05D007503 ORTHO05D009487 2.3e-21 105.1 66 77.3
Haze_14060 Corylus avellana HOM05D007503 ORTHO05D009487 2.3e-21 105.1 66 77.3
Gohir.A11G170200 Gossypium hirsutum HOM05D007503 ORTHO05D009487 2.3e-21 105.1 77 70.1
Gohir.D11G177200 Gossypium hirsutum HOM05D007503 ORTHO05D009487 2.3e-21 105.1 77 70.1
Gorai.007G189300 Gossypium raimondii HOM05D007503 ORTHO05D009487 2.3e-21 105.1 77 70.1
SalBow6G4878 Salvia bowleyana HOM05D007503 ORTHO05D009487 2.3e-21 105.1 60 85.0
MD17G1272500 Malus domestica HOM05D007503 ORTHO05D009487 3.8e-21 104.4 73 76.7
Nn1g09784 Nelumbo nucifera HOM05D007503 ORTHO05D009487 3.8e-21 104.4 73 71.2
RcHm_v2.0_Chr3g0487701 Rosa chinensis HOM05D007503 ORTHO05D009487 3.8e-21 104.4 73 74.0
CiPaw.03G009100 Carya illinoinensis HOM05D007503 ORTHO05D009487 8.6e-21 103.2 63 77.8
Prupe.3G011500 Prunus persica HOM05D007503 ORTHO05D009487 8.6e-21 103.2 73 74.0
ECA232G1405 Erigeron canadensis HOM05D007503 ORTHO05D009487 1.1e-20 102.8 63 76.2
Sc09g0004610 Simmondsia chinensis HOM05D007503 ORTHO05D009487 1.5e-20 102.4 73 69.9
Phvul.006G084000 Phaseolus vulgaris HOM05D007503 ORTHO05D009487 1.9e-20 102.1 66 71.2
DCAR_007994 Daucus carota HOM05D007503 ORTHO05D009487 2.5e-20 101.7 65 78.5
TWI56G0335 Tripterygium wilfordii HOM05D007503 ORTHO05D009487 2.5e-20 101.7 63 76.2
MD09G1282700 Malus domestica HOM05D007503 ORTHO05D009487 3.3e-20 101.3 73 75.3
FvH4_1g27230 Fragaria vesca HOM05D007503 ORTHO05D009487 4.2e-20 100.9 72 73.6
FAN19G2707 Fragaria x ananassa HOM05D007503 ORTHO05D009487 4.2e-20 100.9 72 73.6
FAN23G0073 Fragaria x ananassa HOM05D007503 ORTHO05D009487 4.2e-20 100.9 72 73.6
Nitab4.5_0001653g0060 Nicotiana tabacum HOM05D007503 ORTHO05D009487 5.5e-20 100.5 65 78.5
DCAR_023852 Daucus carota HOM05D007503 ORTHO05D009487 7.2e-20 100.1 65 76.9
Nitab4.5_0011656g0020 Nicotiana tabacum HOM05D007503 ORTHO05D009487 7.2e-20 100.1 60 81.7
THA.LOC104815587 Tarenaya hassleriana HOM05D007503 ORTHO05D009487 9.5e-20 99.8 66 74.2
Manes.01G240301 Manihot esculenta HOM05D007503 ORTHO05D009487 1.6e-19 99.0 70 68.6
FAN26G0784 Fragaria x ananassa HOM05D000757 ORTHO05D000622 2.1e-19 98.6 69 76.8
Glyma.11G203700 Glycine max HOM05D007503 ORTHO05D009487 2.1e-19 98.6 66 68.2
Glyma.18G047300 Glycine max HOM05D007503 ORTHO05D009487 2.1e-19 98.6 66 68.2
PSO729G0165 Papaver somniferum HOM05D007503 ORTHO05D009487 2.1e-19 98.6 70 77.1
Solyc03g058340.3 Solanum lycopersicum HOM05D007503 ORTHO05D009487 2.8e-19 98.2 77 67.5
Sopen03g015570 Solanum pennellii HOM05D007503 ORTHO05D009487 2.8e-19 98.2 77 67.5
CAN.G326.18 Capsicum annuum HOM05D007503 ORTHO05D009487 3.6e-19 97.8 77 68.8
QL02p056384 Quercus lobata HOM05D007503 ORTHO05D009487 4.7e-19 97.4 63 74.6
Hund06856 Selenicereus undatus HOM05D007503 ORTHO05D009487 4.7e-19 97.4 66 72.7
Lj6g0027028 Lotus japonicus HOM05D007503 ORTHO05D009487 6.1e-19 97.1 73 65.8
Thecc.09G340100 Theobroma cacao HOM05D007503 ORTHO05D009487 6.1e-19 97.1 77 67.5
THA.LOC104822606 Tarenaya hassleriana HOM05D007503 ORTHO05D009487 8.0e-19 96.7 66 71.2
BraA01t03971Z Brassica rapa HOM05D007503 ORTHO05D009487 1.0e-18 96.3 66 72.7
Ciclev10013261m.g Citrus clementina HOM05D007503 ORTHO05D009487 1.0e-18 96.3 65 72.3
Lalb_Chr20g0117211 Lupinus albus HOM05D007503 ORTHO05D009487 1.0e-18 96.3 71 67.6
Peaxi162Scf00253g00725 Petunia axillaris HOM05D007503 ORTHO05D009487 1.0e-18 96.3 74 71.6
Potri.014G105250 Populus trichocarpa HOM05D007503 ORTHO05D009487 1.4e-18 95.9 68 69.1
A01p39280 Brassica napus HOM05D007503 ORTHO05D009487 1.8e-18 95.5 66 72.7
Nitab4.5_0002233g0020 Nicotiana tabacum HOM05D007503 ORTHO05D009487 1.8e-18 95.5 77 66.2
Duzib211G0566 Durio zibethinus HOM05D007503 ORTHO05D009487 2.3e-18 95.1 77 64.9
Migut.F01879 Erythranthe guttata HOM05D007503 ORTHO05D009487 2.3e-18 95.1 56 82.1
Eucgr.I00239 Eucalyptus grandis HOM05D007503 ORTHO05D009487 2.3e-18 95.1 65 75.4
C01p50080 Brassica napus HOM05D007503 ORTHO05D009487 3.0e-18 94.7 66 71.2
BolC1t04962H Brassica oleracea HOM05D007503 ORTHO05D009487 3.0e-18 94.7 66 71.2
COL.COLO4_13441 Corchorus olitorius HOM05D007503 ORTHO05D009487 3.0e-18 94.7 77 64.9
CANSAT80G2883 Cannabis sativa HOM05D007503 ORTHO05D009487 4.0e-18 94.4 63 73.0
BcaC09g48410 Brassica carinata HOM05D007503 ORTHO05D009487 6.8e-18 93.6 66 69.7
A05p34950 Brassica napus HOM05D007503 ORTHO05D009487 8.9e-18 93.2 67 71.6
BraA05t22309Z Brassica rapa HOM05D007503 ORTHO05D009487 8.9e-18 93.2 67 71.6
BcaB06g25385 Brassica carinata HOM05D007503 ORTHO05D009487 1.5e-17 92.4 66 71.2
BolC5t33967H Brassica oleracea HOM05D007503 ORTHO05D009487 1.5e-17 92.4 66 71.2
C05p52900 Brassica napus HOM05D007503 ORTHO05D009487 2.0e-17 92.0 69 68.1
Carub.0003s1415 Capsella rubella HOM05D007503 ORTHO05D009487 2.0e-17 92.0 66 69.7
AT3G14430 Arabidopsis thaliana HOM05D007503 ORTHO05D009487 2.6e-17 91.7 66 69.7
CDE05G2177 Ceratophyllum demersum HOM05D007503 ORTHO05D009487 4.4e-17 90.9 65 67.7
Aqoxy5G03063 Aquilegia oxysepala HOM05D007503 ORTHO05D009487 5.7e-17 90.5 63 71.4
Sp3g12730 Schrenkiella parvula HOM05D007503 ORTHO05D009487 5.7e-17 90.5 66 68.2
BcaC05g29084 Brassica carinata HOM05D007503 ORTHO05D009487 7.5e-17 90.1 66 69.7
CARHR089340 Cardamine hirsuta HOM05D007503 ORTHO05D009487 7.5e-17 90.1 66 66.7
Thhalv10021919m.g Eutrema salsugineum HOM05D007503 ORTHO05D009487 9.8e-17 89.7 63 73.0
Medtr3g063970 Medicago truncatula HOM05D007503 ORTHO05D009487 1.3e-16 89.4 64 68.8
AL3G26810 Arabidopsis lyrata HOM05D007503 ORTHO05D009487 1.7e-16 89.0 66 69.7
Sabra14G0077600 Salix brachista HOM05D007503 ORTHO05D009487 3.7e-16 87.8 68 64.7
unitig_0.g938 Utricularia gibba HOM05D001953 ORTHO05D001904 3.7e-16 87.8 56 75.0
Aa31LG8G1690 Aethionema arabicum HOM05D007503 ORTHO05D009487 1.8e-15 85.5 66 65.2
ClCG01G008330 Citrullus lanatus HOM05D007503 ORTHO05D009487 1.8e-15 85.5 72 59.7
MELO3C025073.2 Cucumis melo HOM05D007503 ORTHO05D009487 3.2e-15 84.7 72 58.3
Sed0018329 Sechium edule HOM05D007503 ORTHO05D009487 5.4e-15 84.0 72 56.9
CsaV3_5G020250 Cucumis sativus L. HOM05D007503 ORTHO05D009487 1.2e-14 82.8 64 62.5
Sabra02G0134700 Salix brachista HOM05D007503 ORTHO05D009487 5.9e-14 80.5 67 53.7
PGR119G1426 Punica granatum HOM05D007503 ORTHO05D009487 2.3e-13 78.6 66 65.2
Zm00001eb175060 Zea mays HOM05D007503 ORTHO05D009487 2.3e-13 78.6 67 65.7
Os08g0528601 Oryza sativa ssp. japonica HOM05D007503 ORTHO05D009487 2.9e-13 78.2 56 71.4
Zm00001eb036330 Zea mays HOM05D007503 ORTHO05D009487 3.9e-13 77.8 69 62.3
Cpa.g.c46349 Carica papaya HOM05D007503 ORTHO05D009487 8.6e-13 76.6 65 60.0
Cpa.g.sc44.91 Carica papaya HOM05D007503 ORTHO05D009487 8.6e-13 76.6 65 60.0
Pp3c11_25150 Physcomitrium patens HOM05D007503 ORTHO05D009487 2.8e-11 71.6 50 72.0
Aa31LG10G1620 Aethionema arabicum HOM05D007503 ORTHO05D009487 4.0e-10 67.8 68 52.9
CSS0042421 Camellia sinensis var. sinensis HOM05D007503 ORTHO05D009487 1.2e-09 66.2 50 76.0
TAR392G0002 Trochodendron aralioides HOM05D007503 ORTHO05D009487 2.6e-09 65.1 50 70.0
Lsat_1_v5_gn_9_48861 Lactuca sativa HOM05D007503 ORTHO05D009487 5.8e-09 63.9 53 69.8
Pp3c7_7140 Physcomitrium patens HOM05D007503 ORTHO05D009487 1.3e-08 62.8 50 64.0
HanXRQChr14g0445891 Helianthus annuus HOM05D007503 ORTHO05D009487 8.3e-08 60.1 51 70.6
PGSC0003DMG400000976 Solanum tuberosum HOM05D007503 ORTHO05D009487 1.9e-07 58.9 54 63.0
arahy.Tifrunner.gnm1.ann1.CKCH2H Arachis hypogaea HOM05D007503 ORTHO05D009487 4.1e-07 57.8 50 64.0
arahy.Tifrunner.gnm1.ann1.17W1X2 Arachis hypogaea HOM05D007503 ORTHO05D009487 1.6e-06 55.8 50 62.0
Mapoly0109s0063 Marchantia polymorpha HOM05D007503 ORTHO05D009487 6.0e-06 53.9 38 78.9
TPR.G29629 Trifolium pratense HOM05D007503 ORTHO05D009487 6.0e-06 53.9 50 64.0
BcaC02g09481 Brassica carinata HOM05D007503 ORTHO05D009487 7.8e-06 53.5 43 67.4


User provided reference genes

Program Settings