Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro20631 Vaccinium macrocarpon HOM05D005001 ORTHO05D005796 0.0e+00 1577.4 808 100.0
Rhsim10G0195500 Rhododendron simsii HOM05D005001 ORTHO05D005796 0.0e+00 1300.0 849 81.5
CSS0006057 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 3.2e-302 1041.6 883 66.9
Actinidia22897 Actinidia chinensis HOM05D005001 ORTHO05D005796 1.1e-294 1016.5 875 65.3
Actinidia17358 Actinidia chinensis HOM05D005001 ORTHO05D005796 2.0e-291 1005.7 875 65.4
CSS0002200 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 2.0e-280 969.1 883 63.0
Dinv08162 Davidia involucrata HOM05D005001 ORTHO05D005796 2.7e-277 958.7 891 62.7
Dinv40189 Davidia involucrata HOM05D005001 ORTHO05D005796 9.7e-275 950.3 892 62.1
CSS0020393 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 7.2e-262 907.5 851 61.8
QL06p052982 Quercus lobata HOM05D005001 ORTHO05D005796 6.0e-240 834.7 874 56.8
Lj2C499T6 Lonicera japonica HOM05D005001 ORTHO05D005796 1.5e-238 830.1 845 56.3
Haze_03653 Corylus avellana HOM05D005001 ORTHO05D005796 5.8e-235 818.1 882 55.7
Cfa007079 Carpinus fangiana HOM05D005001 ORTHO05D005796 2.4e-233 812.8 885 55.5
Atru.chr3.132 Acer truncatum HOM05D005001 ORTHO05D005796 4.6e-232 808.5 878 54.9
Duzib147G1512 Durio zibethinus HOM05D005001 ORTHO05D005796 7.8e-232 807.7 890 54.6
COL.COLO4_22551 Corchorus olitorius HOM05D005001 ORTHO05D005796 3.3e-230 802.4 864 55.6
Potri.005G101700 Populus trichocarpa HOM05D005001 ORTHO05D005796 1.7e-223 780.0 875 53.7
Sabra05G0084100 Salix brachista HOM05D005001 ORTHO05D005796 6.6e-223 778.1 876 53.3
Manes.01G155500 Manihot esculenta HOM05D005001 ORTHO05D005796 1.1e-222 777.3 874 53.3
Oeu042477.2 Olea europaea HOM05D005001 ORTHO05D005796 2.5e-222 776.2 848 54.1
Nitab4.5_0001467g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 7.3e-222 774.6 874 52.3
Cc07_g11880 Coffea canephora HOM05D005001 ORTHO05D005796 2.8e-221 772.7 889 52.4
Thecc.01G005400 Theobroma cacao HOM05D005001 ORTHO05D005796 4.7e-221 771.9 860 54.5
CiPaw.07G002600 Carya illinoinensis HOM05D005001 ORTHO05D005796 8.1e-221 771.2 870 53.6
Ciclev10024851m.g Citrus clementina HOM05D005001 ORTHO05D005796 8.9e-220 767.7 893 53.0
Cpa.g.sc6.369 Carica papaya HOM05D005001 ORTHO05D005796 1.5e-219 766.9 884 52.3
Nitab4.5_0004608g0060 Nicotiana tabacum HOM05D005001 ORTHO05D005796 7.1e-217 758.1 870 52.0
Gorai.003G002300 Gossypium raimondii HOM05D005001 ORTHO05D005796 9.3e-217 757.7 867 53.2
Sopen02g027420 Solanum pennellii HOM05D005001 ORTHO05D005796 2.1e-216 756.5 874 51.4
Gohir.D03G002000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 6.0e-216 755.0 867 53.2
Solyc02g082680.4 Solanum lycopersicum HOM05D005001 ORTHO05D005796 2.3e-215 753.1 873 51.2
Peaxi162Scf01475g00020 Petunia axillaris HOM05D005001 ORTHO05D005796 1.1e-214 750.7 872 52.1
TAR628G1461 Trochodendron aralioides HOM05D005001 ORTHO05D005796 3.3e-214 749.2 882 52.4
Prupe.7G183200 Prunus persica HOM05D005001 ORTHO05D005796 4.3e-214 748.8 891 51.3
RcHm_v2.0_Chr2g0097131 Rosa chinensis HOM05D005001 ORTHO05D005796 4.3e-214 748.8 875 51.2
Gohir.A02G177800 Gossypium hirsutum HOM05D005001 ORTHO05D005796 5.6e-214 748.4 867 52.6
TWI09G0186 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 2.1e-213 746.5 909 51.0
PGSC0003DMG400001566 Solanum tuberosum HOM05D005001 ORTHO05D005796 6.2e-213 745.0 874 50.8
GSVIVG01026639001 Vitis vinifera HOM05D005001 ORTHO05D005796 5.8e-211 738.4 829 53.6
FvH4_1g10290 Fragaria vesca HOM05D005001 ORTHO05D005796 1.4e-209 733.8 877 51.0
FAN26G0131 Fragaria x ananassa HOM05D005001 ORTHO05D005796 1.4e-209 733.8 877 51.0
FAN19G0848 Fragaria x ananassa HOM05D005001 ORTHO05D005796 3.2e-209 732.6 877 51.0
Manes.02G114100 Manihot esculenta HOM05D005001 ORTHO05D005796 1.7e-207 726.9 877 50.4
MSTRG.3631 Avicennia marina HOM05D005001 ORTHO05D005796 4.3e-206 722.2 889 49.0
MD15G1231000 Malus domestica HOM05D005001 ORTHO05D005796 1.8e-204 716.8 875 50.4
ClCG10G000290 Citrullus lanatus HOM05D005001 ORTHO05D005796 2.4e-204 716.5 868 50.5
TWI53G0117 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 1.4e-201 707.2 844 51.3
CANSAT25G0747 Cannabis sativa HOM05D005001 ORTHO05D005796 1.9e-201 706.8 876 52.2
Nn6g31704 Nelumbo nucifera HOM05D005001 ORTHO05D005796 1.9e-201 706.8 882 50.2
DCAR_002956 Daucus carota HOM05D005001 ORTHO05D005796 2.3e-199 699.9 868 49.5
CsaV3_3G000320 Cucumis sativus L. HOM05D005001 ORTHO05D005796 1.5e-198 697.2 877 49.8
Glyma.11G086000 Glycine max HOM05D005001 ORTHO05D005796 2.5e-198 696.4 867 49.1
Glyma.01G158600 Glycine max HOM05D005001 ORTHO05D005796 4.3e-198 695.7 871 48.7
Lj2g0010904 Lotus japonicus HOM05D005001 ORTHO05D005796 6.9e-196 688.3 869 48.4
CiPaw.08G181700 Carya illinoinensis HOM05D005001 ORTHO05D005796 1.5e-195 687.2 834 51.7
Nn5g30991 Nelumbo nucifera HOM05D005001 ORTHO05D005796 1.3e-194 684.1 885 50.3
Aqoxy5G01010 Aquilegia oxysepala HOM05D005001 ORTHO05D005796 1.9e-193 680.2 860 48.3
Gorai.001G199100 Gossypium raimondii HOM05D005001 ORTHO05D005796 3.2e-193 679.5 954 45.9
SalBow3G4537 Salvia bowleyana HOM05D005001 ORTHO05D005796 4.2e-193 679.1 884 48.9
arahy.Tifrunner.gnm1.ann1.1YR532 Arachis hypogaea HOM05D005001 ORTHO05D005796 7.1e-193 678.3 878 48.5
arahy.Tifrunner.gnm1.ann1.XJ0R0A Arachis hypogaea HOM05D005001 ORTHO05D005796 7.1e-193 678.3 878 48.5
MD02G1115000 Malus domestica HOM05D005001 ORTHO05D005796 9.3e-193 677.9 878 48.6
SalBow3G0770 Salvia bowleyana HOM05D005001 ORTHO05D005796 1.2e-192 677.6 884 48.6
Sed0016412 Sechium edule HOM05D005001 ORTHO05D005796 5.1e-191 672.2 872 48.9
VMungo1215G1172 Vigna mungo HOM05D005001 ORTHO05D005796 1.5e-190 670.6 874 47.3
Migut.L00777 Erythranthe guttata HOM05D005001 ORTHO05D005796 2.0e-187 660.2 868 47.8
Phvul.002G116700 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 3.4e-187 659.4 876 47.3
Lsat_1_v5_gn_3_67981 Lactuca sativa HOM05D005001 ORTHO05D005796 9.3e-185 651.4 839 50.2
FAN23G2126 Fragaria x ananassa HOM05D005001 ORTHO05D005796 1.6e-184 650.6 851 47.5
MELO3C013726.2 Cucumis melo HOM05D005001 ORTHO05D005796 1.3e-183 647.5 851 47.8
Ca_24983_v3 Cicer arietinum L. HOM05D005001 ORTHO05D005796 6.7e-183 645.2 880 46.7
TPR.G33869 Trifolium pratense HOM05D005001 ORTHO05D005796 5.7e-182 642.1 867 46.0
Medtr5g024240 Medicago truncatula HOM05D005001 ORTHO05D005796 9.7e-182 641.3 860 47.1
SalBow5G1781 Salvia bowleyana HOM05D005001 ORTHO05D005796 8.2e-181 638.3 851 47.0
Psat2g148080 Pisum sativum HOM05D005001 ORTHO05D005796 4.1e-180 636.0 869 46.8
ECA246G0522 Erigeron canadensis HOM05D005001 ORTHO05D005796 1.7e-178 630.6 756 51.7
EL10Ac6g15057 Beta vulgaris HOM05D005001 ORTHO05D005796 1.6e-176 624.0 894 43.5
HanXRQChr16g0531881 Helianthus annuus HOM05D005001 ORTHO05D005796 4.6e-176 622.5 840 45.8
Peaxi162Scf00122g02417 Petunia axillaris HOM05D005001 ORTHO05D005796 6.1e-176 622.1 813 47.8
PSO761G0634 Papaver somniferum HOM05D005001 ORTHO05D005796 1.8e-172 610.5 923 43.4
Lalb_Chr05g0214801 Lupinus albus HOM05D005001 ORTHO05D005796 1.5e-171 607.4 872 46.3
Glyma.09G198000 Glycine max HOM05D005001 ORTHO05D005796 2.9e-170 603.2 868 45.3
Nitab4.5_0000495g0110 Nicotiana tabacum HOM05D005001 ORTHO05D005796 3.8e-170 602.8 770 49.7
PSO210G6136 Papaver somniferum HOM05D005001 ORTHO05D005796 3.8e-170 602.8 923 42.7
AUR62003748 Chenopodium quinoa HOM05D005001 ORTHO05D005796 1.1e-169 601.3 923 41.3
Glyma.16G116100 Glycine max HOM05D005001 ORTHO05D005796 2.5e-169 600.1 869 45.3
MBI08_g12258_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 7.2e-169 598.6 945 42.2
Eucgr.J02537 Eucalyptus grandis HOM05D005001 ORTHO05D005796 3.0e-167 593.2 626 56.7
AUR62002047 Chenopodium quinoa HOM05D005001 ORTHO05D005796 7.4e-166 588.6 924 40.9
PGSC0003DMG400018683 Solanum tuberosum HOM05D005001 ORTHO05D005796 7.4e-166 588.6 834 48.1
Nitab4.5_0005297g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 4.5e-163 579.3 806 46.0
Sopen03g005960 Solanum pennellii HOM05D005001 ORTHO05D005796 4.5e-163 579.3 835 46.1
Hund03602 Selenicereus undatus HOM05D005001 ORTHO05D005796 2.2e-162 577.0 945 41.1
Ah.02g122920 Amaranthus hybridus HOM05D005001 ORTHO05D005796 1.5e-161 574.3 897 42.0
Solyc03g032110.3 Solanum lycopersicum HOM05D005001 ORTHO05D005796 4.7e-160 569.3 835 45.7
PGR119G1974 Punica granatum HOM05D005001 ORTHO05D005796 6.1e-160 568.9 840 45.8
Phvul.003G270200 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 7.5e-158 562.0 856 44.9
SGA_v2.0_scaffold41G15753 Striga asiatica HOM05D005001 ORTHO05D005796 1.7e-154 550.8 847 45.0
THA.LOC104804295 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 8.0e-152 542.0 824 43.2
VMungo0251G3365 Vigna mungo HOM05D005001 ORTHO05D005796 2.6e-150 537.0 871 43.2
Sp3g30910 Schrenkiella parvula HOM05D005001 ORTHO05D005796 3.2e-145 520.0 855 42.6
Carub.0003s3164 Capsella rubella HOM05D005001 ORTHO05D005796 2.1e-144 517.3 838 41.6
Thhalv10022564m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 3.0e-143 513.5 856 41.7
BolC7t40970H Brassica oleracea HOM05D005001 ORTHO05D005796 8.8e-143 511.9 845 41.7
C07p05710 Brassica napus HOM05D005001 ORTHO05D005796 1.5e-142 511.1 843 41.8
BcaC06g36289 Brassica carinata HOM05D005001 ORTHO05D005796 1.3e-141 508.1 848 41.7
Lj4g0000674 Lotus japonicus HOM05D005001 ORTHO05D005796 1.7e-141 507.7 831 43.3
AT2G17550 Arabidopsis thaliana HOM05D005001 ORTHO05D005796 2.2e-141 507.3 845 41.9
A07p03420 Brassica napus HOM05D005001 ORTHO05D005796 2.2e-141 507.3 847 41.3
BraA07t28140Z Brassica rapa HOM05D005001 ORTHO05D005796 2.2e-141 507.3 847 41.3
AL3G50520 Arabidopsis lyrata HOM05D005001 ORTHO05D005796 3.7e-141 506.5 842 41.8
Hund19695 Selenicereus undatus HOM05D005001 ORTHO05D005796 7.7e-139 498.8 890 41.1
CARHR107730 Cardamine hirsuta HOM05D005001 ORTHO05D005796 1.5e-137 494.6 851 41.6
BcaB03g16525 Brassica carinata HOM05D005001 ORTHO05D005796 3.7e-133 479.9 809 41.5
Lalb_Chr16g0380031 Lupinus albus HOM05D005001 ORTHO05D005796 3.0e-130 470.3 664 47.6
MBI05_g14348_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 1.8e-127 461.1 858 38.7
Aa31LG8G14850 Aethionema arabicum HOM05D005001 ORTHO05D005796 5.4e-116 422.9 853 38.7
Gohir.D07G178000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 1.7e-114 417.9 680 42.5
ATR0807G148 Amborella trichopoda HOM05D005001 ORTHO05D005796 5.6e-113 412.9 850 36.1
PSO541G4728 Papaver somniferum HOM05D005001 ORTHO05D005796 8.9e-111 405.6 920 36.8
PSO675G2514 Papaver somniferum HOM05D005001 ORTHO05D005796 8.9e-111 405.6 912 37.0
arahy.Tifrunner.gnm1.ann1.3933SP Arachis hypogaea HOM05D005001 ORTHO05D005796 2.2e-109 401.0 808 37.6
Gohir.A07G171200 Gossypium hirsutum HOM05D005001 ORTHO05D005796 1.9e-108 397.9 663 41.8
Sc03g0003960 Simmondsia chinensis HOM05D005001 ORTHO05D005796 2.3e-106 391.0 604 44.4
Os03g0130700 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 1.3e-93 348.6 907 32.6
THA.LOC104819718 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 9.6e-89 332.4 818 34.6
Lj4A237T62 Lonicera japonica HOM05D005001 ORTHO05D005796 6.2e-80 303.1 478 43.5
Zm00001eb002440 Zea mays HOM05D005001 ORTHO05D005796 1.1e-79 302.4 920 31.1
HPP92_007108 Vanilla planifolia HOM05D005001 ORTHO05D005796 1.2e-78 298.9 902 31.9
unitig_37.g12434 Utricularia gibba HOM05D005001 ORTHO05D005796 8.5e-69 266.2 455 37.6
arahy.Tifrunner.gnm1.ann1.8C07DS Arachis hypogaea HOM05D005001 ORTHO05D005796 4.1e-47 194.1 539 31.7
FAN28G2205 Fragaria x ananassa HOM05D005001 ORTHO05D005796 4.2e-44 184.1 178 52.8
Os06g0728200 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 3.6e-43 181.0 918 27.0
Lalb_Chr16g0380041 Lupinus albus HOM05D005001 ORTHO05D005796 3.3e-41 174.5 212 45.8
Medtr5g025350 Medicago truncatula HOM05D005001 ORTHO05D005796 4.1e-39 167.5 262 45.0
Lj4P237T25 Lonicera japonica HOM05D005001 ORTHO05D005796 1.2e-38 166.0 203 50.7
Thhalv10023126m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 3.5e-38 164.5 226 42.9
unitig_37.g12435 Utricularia gibba HOM05D005001 ORTHO05D005796 2.9e-37 161.4 313 40.3
HPP92_022687 Vanilla planifolia HOM05D005001 ORTHO05D005796 1.9e-36 158.7 389 36.5
HPP92_022688 Vanilla planifolia HOM05D005001 ORTHO05D005796 2.8e-32 144.8 297 35.0
CDE05G1993 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 4.4e-25 120.9 537 26.6
CDE05G3420 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 1.5e-20 105.9 486 26.5
Medtr5g025380 Medicago truncatula HOM05D005001 ORTHO05D005796 1.3e-16 92.8 137 45.3
SEGI_29651 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 2.0e-14 85.5 299 26.8
Dinv23669 Davidia involucrata HOM05D005001 ORTHO05D005796 2.7e-14 85.1 154 44.2
Mapoly0151s0019 Marchantia polymorpha HOM05D002515 ORTHO05D002722 3.9e-13 81.3 180 31.7
AagrBONN_evm.TU.Sc2ySwM_228.4044 Anthoceros agrestis HOM05D002515 ORTHO05D005796 1.1e-12 79.7 223 29.1
Dinv30187 Davidia involucrata HOM05D005001 ORTHO05D005796 9.5e-12 76.6 152 41.4
SEGI_23141 Sequoiadendron giganteum HOM05D002769 ORTHO05D001913 9.5e-12 76.6 458 24.2
ATR0759G019 Amborella trichopoda HOM05D002769 ORTHO05D001913 3.1e-10 71.6 275 27.6
Pp3c1_31050 Physcomitrium patens HOM05D019165 ORTHO05D015879 1.5e-09 69.3 294 24.1
ECA236G1034 Erigeron canadensis HOM05D002515 ORTHO05D005057 4.4e-09 67.8 174 29.3
SEGI_17592 Sequoiadendron giganteum HOM05D003765 ORTHO05D004561 4.9e-08 64.3 229 27.1
Nn2g10370 Nelumbo nucifera HOM05D002515 ORTHO05D002722 8.3e-08 63.5 289 25.3
Rhsim04G0156800 Rhododendron simsii HOM05D002515 ORTHO05D002722 8.3e-08 63.5 271 30.6
Rhsim04G0157000 Rhododendron simsii HOM05D002515 ORTHO05D002722 8.3e-08 63.5 271 30.6
ATR0559G060 Amborella trichopoda HOM05D002515 ORTHO05D002722 1.1e-07 63.2 274 28.5
HanXRQChr15g0470071 Helianthus annuus HOM05D002515 ORTHO05D002722 1.1e-07 63.2 186 32.8
RcHm_v2.0_Chr5g0064421 Rosa chinensis HOM05D002515 ORTHO05D002722 1.1e-07 63.2 187 27.8
Actinidia10009 Actinidia chinensis HOM05D002082 ORTHO05D002130 1.4e-07 62.8 299 25.1
FvH4_3g36010 Fragaria vesca HOM05D002515 ORTHO05D002722 1.9e-07 62.4 189 27.5
FAN11G3380 Fragaria x ananassa HOM05D002515 ORTHO05D002722 1.9e-07 62.4 187 28.3
Ah.08g213810 Amaranthus hybridus HOM05D002769 ORTHO05D003160 2.4e-07 62.0 867 21.0
Dinv03480 Davidia involucrata HOM05D005001 ORTHO05D005796 2.4e-07 62.0 93 49.5
PSO384G3367 Papaver somniferum HOM05D002515 ORTHO05D002722 3.2e-07 61.6 299 28.1
FAN16G3741 Fragaria x ananassa HOM05D002515 ORTHO05D002722 4.1e-07 61.2 189 27.5
Mapoly0065s0025 Marchantia polymorpha HOM05D026222 ORTHO05D001588 5.4e-07 60.8 323 22.9
PSO339G4477 Papaver somniferum HOM05D002515 ORTHO05D002722 5.4e-07 60.8 168 31.5
FAN21G0377 Fragaria x ananassa HOM05D002515 ORTHO05D006653 7.0e-07 60.5 189 28.0
Lsat_1_v5_gn_8_109380 Lactuca sativa HOM05D002515 ORTHO05D002722 1.2e-06 59.7 304 26.0
vmacro20942 Vaccinium macrocarpon HOM05D002082 ORTHO05D002130 1.2e-06 59.7 266 28.2
MD11G1109700 Malus domestica HOM05D002515 ORTHO05D002722 2.7e-06 58.5 172 26.7
Haze_24092 Corylus avellana HOM05D002515 ORTHO05D002722 4.6e-06 57.8 204 27.9
Prupe.6G254700 Prunus persica HOM05D002515 ORTHO05D002722 7.8e-06 57.0 292 25.0


User provided reference genes

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