Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro20587 Vaccinium macrocarpon HOM05D002544 ORTHO05D007856 0.0e+00 1424.8 733 100.0
Rhsim10G0180300 Rhododendron simsii HOM05D002544 ORTHO05D007856 0.0e+00 1096.6 683 83.6
Actinidia06481 Actinidia chinensis HOM05D002544 ORTHO05D007856 6.1e-292 1007.3 684 75.7
Actinidia17196 Actinidia chinensis HOM05D002544 ORTHO05D007856 1.5e-290 1002.7 679 75.7
CSS0008925 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 7.4e-290 1000.3 684 75.4
CSS0046327 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 1.8e-288 995.7 679 75.8
Dinv19050 Davidia involucrata HOM05D002544 ORTHO05D007856 1.3e-281 973.0 676 73.7
Hma1.2p1_0158F.1_g070010 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 3.6e-276 954.9 678 71.4
GSVIVG01030701001 Vitis vinifera HOM05D002544 ORTHO05D007856 3.4e-266 921.8 683 69.1
TAR622G0658 Trochodendron aralioides HOM05D002544 ORTHO05D007856 4.3e-261 904.8 680 67.5
QL03p020295 Quercus lobata HOM05D002544 ORTHO05D007856 1.5e-258 896.3 680 67.1
Prupe.3G165300 Prunus persica HOM05D002544 ORTHO05D007856 4.4e-258 894.8 677 67.7
CiPaw.03G074200 Carya illinoinensis HOM05D002544 ORTHO05D007856 3.7e-257 891.7 674 67.5
Gohir.D05G289100 Gossypium hirsutum HOM05D002544 ORTHO05D007856 3.7e-257 891.7 676 67.0
Gorai.009G304200 Gossypium raimondii HOM05D002544 ORTHO05D007856 7.0e-256 887.5 676 66.9
Gohir.A05G287900 Gossypium hirsutum HOM05D002544 ORTHO05D007856 2.0e-255 885.9 674 66.6
Lj4A258G27 Lonicera japonica HOM05D002544 ORTHO05D007856 1.0e-254 883.6 692 67.8
Duzib128G1814 Durio zibethinus HOM05D002544 ORTHO05D007856 2.3e-254 882.5 705 64.0
Atru.chr1.2033 Acer truncatum HOM05D002544 ORTHO05D007856 5.6e-253 877.9 681 65.9
Manes.02G078600 Manihot esculenta HOM05D002544 ORTHO05D007856 1.6e-252 876.3 683 64.0
RcHm_v2.0_Chr3g0492061 Rosa chinensis HOM05D002544 ORTHO05D007856 6.2e-252 874.4 676 66.3
TWI53G0412 Tripterygium wilfordii HOM05D002544 ORTHO05D007856 8.0e-252 874.0 677 65.7
MD17G1267200 Malus domestica HOM05D002544 ORTHO05D007856 2.3e-251 872.5 675 66.5
FvH4_1g30060 Fragaria vesca HOM05D002544 ORTHO05D007856 3.1e-251 872.1 678 65.8
Lalb_Chr18g0053551 Lupinus albus HOM05D002544 ORTHO05D007856 4.1e-248 861.7 674 64.4
Nn3g18419 Nelumbo nucifera HOM05D002544 ORTHO05D007856 4.1e-248 861.7 677 64.5
Haze_14286 Corylus avellana HOM05D002544 ORTHO05D007856 7.8e-247 857.4 674 65.6
Eucgr.F02879 Eucalyptus grandis HOM05D002544 ORTHO05D007856 1.7e-246 856.3 698 63.6
Glyma.18G041900 Glycine max HOM05D002544 ORTHO05D007856 5.0e-246 854.7 674 63.5
VMungo1383G1931 Vigna mungo HOM05D002544 ORTHO05D007856 6.6e-246 854.4 687 61.9
arahy.Tifrunner.gnm1.ann1.5E142I Arachis hypogaea HOM05D002544 ORTHO05D007856 9.5e-245 850.5 674 63.5
arahy.Tifrunner.gnm1.ann1.644H52 Arachis hypogaea HOM05D002544 ORTHO05D007856 2.8e-244 849.0 674 63.2
Ciclev10000514m.g Citrus clementina HOM05D002544 ORTHO05D007856 3.6e-244 848.6 678 63.3
Potri.004G082900 Populus trichocarpa HOM05D002544 ORTHO05D007856 6.2e-244 847.8 677 63.5
Glyma.11G214700 Glycine max HOM05D002544 ORTHO05D007856 1.8e-243 846.3 674 63.6
CsaV3_3G017820 Cucumis sativus L. HOM05D002544 ORTHO05D007856 4.0e-243 845.1 682 63.2
Phvul.001G228700 Phaseolus vulgaris HOM05D002544 ORTHO05D007856 8.9e-243 844.0 674 63.2
CANSAT25G3407 Cannabis sativa HOM05D002544 ORTHO05D007856 3.4e-242 842.0 679 64.1
Lj6g0017134 Lotus japonicus HOM05D002544 ORTHO05D007856 7.5e-242 840.9 674 63.6
Sed0025118 Sechium edule HOM05D002544 ORTHO05D007856 9.8e-242 840.5 693 62.8
DCAR_014158 Daucus carota HOM05D002544 ORTHO05D007856 1.7e-241 839.7 698 61.9
Nitab4.5_0011135g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 1.7e-241 839.7 682 62.6
PSO063G6024 Papaver somniferum HOM05D002544 ORTHO05D007856 2.2e-241 839.3 677 63.4
Sopen11g006270 Solanum pennellii HOM05D002544 ORTHO05D007856 6.4e-241 837.8 677 62.3
Ca_17085_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007856 8.3e-241 837.4 674 63.8
Solyc11g011480.2 Solanum lycopersicum HOM05D002544 ORTHO05D007856 1.9e-240 836.3 677 62.2
Cfa007785 Carpinus fangiana HOM05D002544 ORTHO05D007856 2.4e-240 835.9 666 64.4
Medtr3g065110 Medicago truncatula HOM05D002544 ORTHO05D007856 2.4e-240 835.9 674 63.6
PSO782G4267 Papaver somniferum HOM05D002544 ORTHO05D007856 1.6e-239 833.2 677 62.9
COL.COLO4_38545 Corchorus olitorius HOM05D002544 ORTHO05D007856 6.0e-239 831.2 724 59.5
PGR004G1819 Punica granatum HOM05D002544 ORTHO05D007856 1.0e-238 830.5 682 62.0
Migut.K00933 Erythranthe guttata HOM05D002544 ORTHO05D007856 2.3e-238 829.3 673 62.7
CAN.G222.63 Capsicum annuum HOM05D002544 ORTHO05D007856 9.5e-237 823.9 683 61.3
TPR.G23205 Trifolium pratense HOM05D002544 ORTHO05D007856 9.5e-237 823.9 678 62.7
HanXRQChr16g0532811 Helianthus annuus HOM05D002544 ORTHO05D007856 1.2e-236 823.5 693 62.5
Thecc.10G105700 Theobroma cacao HOM05D002544 ORTHO05D007856 1.1e-232 810.4 606 67.2
Sc04g0005080 Simmondsia chinensis HOM05D002544 ORTHO05D007856 9.2e-232 807.4 677 61.3
A04p06810 Brassica napus HOM05D002544 ORTHO05D007856 1.2e-231 807.0 683 61.1
Oeu030291.2 Olea europaea HOM05D002544 ORTHO05D007856 1.6e-231 806.6 750 56.8
Sp5g09650 Schrenkiella parvula HOM05D002544 ORTHO05D007856 1.6e-231 806.6 675 61.3
AL5G33420 Arabidopsis lyrata HOM05D002544 ORTHO05D007856 1.7e-230 803.1 679 61.0
AT3G52640 Arabidopsis thaliana HOM05D002544 ORTHO05D007856 3.3e-229 798.9 679 60.2
THA.LOC104805637 Tarenaya hassleriana HOM05D002544 ORTHO05D007856 4.3e-229 798.5 713 57.8
Carub.0005s1906 Capsella rubella HOM05D002544 ORTHO05D007856 9.6e-229 797.3 679 60.7
FAN28G1090 Fragaria x ananassa HOM05D002544 ORTHO05D007856 9.6e-229 797.3 678 62.4
Sabra04G0055200 Salix brachista HOM05D002544 ORTHO05D007856 1.2e-228 797.0 761 56.1
BcaC02g09234 Brassica carinata HOM05D002544 ORTHO05D007856 1.1e-227 793.9 684 59.5
C04p40360 Brassica napus HOM05D002544 ORTHO05D007856 1.8e-227 793.1 683 60.0
BcaB02g08559 Brassica carinata HOM05D002544 ORTHO05D007856 1.2e-226 790.4 679 59.8
FAN19G2740 Fragaria x ananassa HOM05D002544 ORTHO05D007856 7.6e-226 787.7 601 67.1
Peaxi162Scf00464g00433 Petunia axillaris HOM05D002544 ORTHO05D007856 1.3e-225 786.9 682 59.8
EL10Ac2g03312 Beta vulgaris HOM05D002544 ORTHO05D007856 2.2e-225 786.2 678 59.7
BraA04t16380Z Brassica rapa HOM05D002544 ORTHO05D007856 2.4e-224 782.7 734 56.8
Thhalv10010197m.g Eutrema salsugineum HOM05D002544 ORTHO05D007856 3.2e-224 782.3 665 59.7
ECA236G0457 Erigeron canadensis HOM05D002544 ORTHO05D007856 5.4e-224 781.6 660 59.8
Lsat_1_v5_gn_3_63981 Lactuca sativa HOM05D002544 ORTHO05D007856 1.6e-223 780.0 654 62.1
Aqoxy3G04067 Aquilegia oxysepala HOM05D002544 ORTHO05D007856 2.1e-223 779.6 678 59.4
Cc07_g13210 Coffea canephora HOM05D002544 ORTHO05D007856 1.0e-222 777.3 597 65.5
ClCG05G010690 Citrullus lanatus HOM05D002544 ORTHO05D007856 1.1e-221 773.9 730 57.1
ATR0118G015 Amborella trichopoda HOM05D002544 ORTHO05D007856 2.1e-220 769.6 675 59.3
Aa31LG10G7700 Aethionema arabicum HOM05D002544 ORTHO05D007856 2.4e-219 766.1 706 56.9
BolC4t25616H Brassica oleracea HOM05D002544 ORTHO05D007856 5.8e-218 761.5 753 54.4
Nitab4.5_0006562g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 1.3e-217 760.4 690 58.4
SGA_v2.0_scaffold45G17141 Striga asiatica HOM05D002544 ORTHO05D007277 8.7e-214 747.7 676 58.0
MBI13_g24909_MAGBIO Magnolia biondii HOM05D002544 ORTHO05D007856 7.4e-213 744.6 731 55.4
AUR62040737 Chenopodium quinoa HOM05D002544 ORTHO05D007856 1.3e-212 743.8 677 57.2
Ah.10g032440 Amaranthus hybridus HOM05D002544 ORTHO05D007856 5.8e-210 734.9 707 56.0
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 2.9e-209 732.6 685 55.8
Os02g0736500 Oryza sativa ssp. japonica HOM05D002544 ORTHO05D007856 1.4e-208 730.3 679 56.1
Cpa.g.sc116.76 Carica papaya HOM05D002544 ORTHO05D007856 1.2e-207 727.2 588 63.4
CDE05G1209 Ceratophyllum demersum HOM05D002544 ORTHO05D007856 1.1e-205 720.7 675 55.9
Psat5g119600 Pisum sativum HOM05D002544 ORTHO05D007856 1.3e-201 707.2 588 62.4
FAN26G1528 Fragaria x ananassa HOM05D002544 ORTHO05D007856 2.5e-200 703.0 678 56.9
AUR62037665 Chenopodium quinoa HOM05D002544 ORTHO05D007856 2.8e-196 689.5 676 54.4
PGSC0003DMG400013310 Solanum tuberosum HOM05D002544 ORTHO05D007856 5.9e-194 681.8 539 64.6
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 4.2e-184 649.0 648 54.5
HPP92_026943 Vanilla planifolia HOM05D002544 ORTHO05D007856 6.9e-179 631.7 619 53.5
unitig_748.g8462 Utricularia gibba HOM05D002544 ORTHO05D007856 1.2e-178 630.9 679 51.8
CARHR162460 Cardamine hirsuta HOM05D002544 ORTHO05D007856 9.4e-176 621.3 534 61.0
Mapoly0182s0008 Marchantia polymorpha HOM05D002544 ORTHO05D007856 1.2e-159 567.8 695 45.0
SMO115G0276 Selaginella moellendorffii HOM05D002544 ORTHO05D007856 5.2e-150 535.8 680 44.4
Hma1.2p1_0158F.1_g070020 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 8.8e-150 535.0 376 71.8
AagrBONN_evm.TU.Sc2ySwM_228.3612 Anthoceros agrestis HOM05D002544 ORTHO05D007856 2.9e-132 476.9 710 41.4
QL02p059469 Quercus lobata HOM05D002544 ORTHO05D007856 1.6e-119 434.5 312 68.6
Pp3c25_11440 Physcomitrium patens HOM05D002544 ORTHO05D007856 3.2e-115 420.2 592 43.1
Lj4C412G0 Lonicera japonica HOM05D002544 ORTHO05D007856 1.2e-93 348.6 391 51.9
SEGI_34556 Sequoiadendron giganteum HOM05D002544 ORTHO05D007856 5.8e-93 346.3 311 56.3
Hund13079 Selenicereus undatus HOM05D002544 ORTHO05D007856 9.3e-91 339.0 356 53.4
HPP92_021312 Vanilla planifolia HOM05D002544 ORTHO05D007856 2.5e-72 277.7 263 57.4
Cre06.g294400 Chlamydomonas reinhardtii HOM05D002544 ORTHO05D007856 6.9e-70 269.6 694 32.3
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 2.2e-63 248.1 359 43.2
CARHR162470 Cardamine hirsuta HOM05D002544 ORTHO05D007856 2.7e-45 188.0 169 55.0
CBR_g26303 Chara braunii HOM05D002544 ORTHO05D000002 4.2e-43 180.6 324 35.2
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 5.7e-40 170.2 334 34.4
MCO14G034 Micromonas commoda HOM05D002544 ORTHO05D007856 1.9e-35 155.2 770 25.3
Zm00001eb289130 Zea mays HOM05D002544 ORTHO05D007856 1.8e-33 148.7 134 56.7
CBR_g26304 Chara braunii HOM05D002544 ORTHO05D007856 5.8e-24 117.1 115 57.4
CBR_g37928 Chara braunii HOM05D000601 ORTHO05D000301 1.7e-23 115.5 176 40.3
Zm00001eb340210 Zea mays HOM05D002544 ORTHO05D007856 1.6e-21 109.0 115 53.0
Cc07_g13200 Coffea canephora HOM05D002544 ORTHO05D007856 8.0e-18 96.7 82 54.9
HPP92_026942 Vanilla planifolia HOM05D002544 ORTHO05D007856 3.4e-16 91.3 83 53.0
Hma1.2p1_0594F.1_g185860 Hydrangea macrophylla HOM05D006828 ORTHO05D008312 4.9e-15 87.4 74 56.8
Haze_22892 Corylus avellana HOM05D002544 ORTHO05D007856 5.4e-14 84.0 107 43.9
C04p40260 Brassica napus HOM05D002544 ORTHO05D007856 9.2e-14 83.2 62 62.9
BolC4t25605H Brassica oleracea HOM05D002544 ORTHO05D007856 9.2e-14 83.2 62 62.9
HPP92_021313 Vanilla planifolia HOM05D002544 ORTHO05D007856 1.0e-12 79.7 65 55.4
CSS0043407 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 3.9e-12 77.8 41 85.4
CSS0029470 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 8.6e-12 76.6 41 85.4
HPP92_021314 Vanilla planifolia HOM05D002544 ORTHO05D007856 4.3e-11 74.3 61 54.1
Gohir.A10G100500 Gossypium hirsutum HOM05D002544 ORTHO05D033931 7.3e-11 73.6 39 87.2
FvH4_4g11392 Fragaria vesca HOM05D000005 ORTHO05D000012 9.5e-11 73.2 50 68.0
FAN02G2717 Fragaria x ananassa HOM05D002544 ORTHO05D007856 9.5e-11 73.2 50 68.0
FAN12G0356 Fragaria x ananassa HOM05D002544 ORTHO05D007856 3.6e-10 71.2 65 55.4
QL02p059474 Quercus lobata HOM05D002544 ORTHO05D007856 1.4e-09 69.3 38 81.6
FAN02G1722 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.8e-09 68.9 50 66.0


User provided reference genes

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