Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro20540 Vaccinium macrocarpon HOM05D001327 ORTHO05D005399 1.5e-43 179.1 89 100.0
CSS0003288 Camellia sinensis var. sinensis HOM05D001327 ORTHO05D005399 5.0e-15 84.3 49 81.6
CSS0028454 Camellia sinensis var. sinensis HOM05D001327 ORTHO05D005399 5.0e-15 84.3 49 81.6
vmacro16513 Vaccinium macrocarpon HOM05D001327 ORTHO05D005399 5.0e-15 84.3 41 95.1
Rhsim01G0074600 Rhododendron simsii HOM05D001327 ORTHO05D005399 1.5e-14 82.8 41 92.7
Actinidia40460 Actinidia chinensis HOM05D001327 ORTHO05D005399 1.9e-14 82.4 41 92.7
Cc06_g08690 Coffea canephora HOM05D001327 ORTHO05D005399 1.9e-14 82.4 49 81.6
CAN.G1757.2 Capsicum annuum HOM05D001327 ORTHO05D005399 2.5e-14 82.0 49 79.6
CiPaw.03G242900 Carya illinoinensis HOM05D001327 ORTHO05D005399 2.5e-14 82.0 49 77.6
CSS0001967 Camellia sinensis var. sinensis HOM05D001327 ORTHO05D005399 3.3e-14 81.6 49 75.5
vmacro16278 Vaccinium macrocarpon HOM05D006873 ORTHO05D008668 3.3e-14 81.6 41 95.1
Actinidia26397 Actinidia chinensis HOM05D001327 ORTHO05D005399 4.2e-14 81.3 41 90.2
Migut.J01173 Erythranthe guttata HOM05D001327 ORTHO05D005399 5.5e-14 80.9 41 90.2
Dinv41524 Davidia involucrata HOM05D001327 ORTHO05D005399 7.2e-14 80.5 42 83.3
Rhsim03G0247500 Rhododendron simsii HOM05D001327 ORTHO05D005399 7.2e-14 80.5 49 75.5
vmacro06123 Vaccinium macrocarpon HOM05D001327 ORTHO05D005399 7.2e-14 80.5 49 75.5
ATR1156G060 Amborella trichopoda HOM05D001327 ORTHO05D005399 9.5e-14 80.1 41 87.8
Solyc08g066820.3 Solanum lycopersicum HOM05D001327 ORTHO05D005399 9.5e-14 80.1 49 75.5
Sopen08g020780 Solanum pennellii HOM05D001327 ORTHO05D005399 9.5e-14 80.1 49 75.5
Gohir.D07G039300 Gossypium hirsutum HOM05D001327 ORTHO05D005399 1.2e-13 79.7 49 71.4
Gorai.001G041400 Gossypium raimondii HOM05D001327 ORTHO05D005399 1.2e-13 79.7 49 71.4
PGSC0003DMG402009603 Solanum tuberosum HOM05D001327 ORTHO05D005399 1.2e-13 79.7 49 75.5
Ah.09g226340 Amaranthus hybridus HOM05D001327 ORTHO05D005399 1.6e-13 79.3 41 87.8
Sc08g0006700 Simmondsia chinensis HOM05D001327 ORTHO05D005399 1.6e-13 79.3 41 87.8
Cpa.g.sc75.48 Carica papaya HOM05D001327 ORTHO05D005399 2.1e-13 79.0 41 85.4
Duzib168G1530 Durio zibethinus HOM05D001327 ORTHO05D005399 2.1e-13 79.0 49 71.4
Duzib150G0117 Durio zibethinus HOM05D001327 ORTHO05D005399 3.6e-13 78.2 45 75.6
Gohir.A07G035300 Gossypium hirsutum HOM05D001327 ORTHO05D005399 3.6e-13 78.2 41 82.9
Thecc.09G124100 Theobroma cacao HOM05D001327 ORTHO05D005399 3.6e-13 78.2 49 69.4
vmacro03835 Vaccinium macrocarpon HOM05D001676 ORTHO05D001539 3.6e-13 78.2 41 87.8
Atru.chr7.1215 Acer truncatum HOM05D001327 ORTHO05D005399 4.7e-13 77.8 41 82.9
CSS0050397 Camellia sinensis var. sinensis HOM05D001327 ORTHO05D005399 4.7e-13 77.8 47 76.6
Potri.006G120700 Populus trichocarpa HOM05D001327 ORTHO05D005399 4.7e-13 77.8 41 82.9
Lsat_1_v5_gn_8_59061 Lactuca sativa HOM05D001327 ORTHO05D005399 6.1e-13 77.4 49 73.5
Lj7A630G51 Lonicera japonica HOM05D001327 ORTHO05D005399 6.1e-13 77.4 49 73.5
Nn2g12004 Nelumbo nucifera HOM05D001327 ORTHO05D005399 6.1e-13 77.4 41 85.4
Peaxi162Scf00641g00008 Petunia axillaris HOM05D001327 ORTHO05D005399 6.1e-13 77.4 49 73.5
GSVIVG01015513001 Vitis vinifera HOM05D001327 ORTHO05D005399 6.1e-13 77.4 41 82.9
COL.COLO4_05782 Corchorus olitorius HOM05D001327 ORTHO05D005399 8.0e-13 77.0 49 69.4
Sabra06G0094800 Salix brachista HOM05D001327 ORTHO05D005399 8.0e-13 77.0 41 82.9
PSO170G6854 Papaver somniferum HOM05D001327 ORTHO05D005399 1.0e-12 76.6 41 82.9
PSO455G0151 Papaver somniferum HOM05D001327 ORTHO05D005399 1.0e-12 76.6 41 82.9
QL02p087951 Quercus lobata HOM05D001327 ORTHO05D005399 1.0e-12 76.6 41 80.5
MSTRG.19605 Avicennia marina HOM05D001327 ORTHO05D005399 1.4e-12 76.3 40 85.0
Ciclev10008632m.g Citrus clementina HOM05D001327 ORTHO05D005399 1.4e-12 76.3 41 80.5
Haze_25606 Corylus avellana HOM05D001327 ORTHO05D005399 1.4e-12 76.3 41 80.5
Eucgr.C01140 Eucalyptus grandis HOM05D001327 ORTHO05D005399 1.4e-12 76.3 41 85.4
EL10Ac8g18630 Beta vulgaris HOM05D001327 ORTHO05D005399 1.8e-12 75.9 41 80.5
MELO3C024971.2 Cucumis melo HOM05D001327 ORTHO05D005399 1.8e-12 75.9 41 80.5
CsaV3_6G002870 Cucumis sativus L. HOM05D001327 ORTHO05D005399 1.8e-12 75.9 41 80.5
DCAR_014874 Daucus carota HOM05D001327 ORTHO05D005399 1.8e-12 75.9 41 80.5
FvH4_1g03540 Fragaria vesca HOM05D001327 ORTHO05D005399 1.8e-12 75.9 41 82.9
FAN19G1565 Fragaria x ananassa HOM05D001327 ORTHO05D005399 1.8e-12 75.9 41 82.9
Sed0000453 Sechium edule HOM05D001327 ORTHO05D005399 1.8e-12 75.9 49 69.4
FAN23G0800 Fragaria x ananassa HOM05D001327 ORTHO05D005399 2.3e-12 75.5 41 80.5
Manes.06G049400 Manihot esculenta HOM05D001327 ORTHO05D005399 2.3e-12 75.5 41 82.9
unitig_46.g18723 Utricularia gibba HOM05D001327 ORTHO05D005399 2.3e-12 75.5 41 78.0
Cfa003355 Carpinus fangiana HOM05D001327 ORTHO05D005399 3.0e-12 75.1 40 82.5
Nitab4.5_0002551g0010 Nicotiana tabacum HOM05D001327 ORTHO05D005399 3.0e-12 75.1 49 71.4
ECA236G0859 Erigeron canadensis HOM05D001327 ORTHO05D005399 4.0e-12 74.7 41 80.5
Gorai.010G064600 Gossypium raimondii HOM05D001327 ORTHO05D005399 4.0e-12 74.7 45 75.6
MBI04_g07642_MAGBIO Magnolia biondii HOM05D001327 ORTHO05D005399 4.0e-12 74.7 41 80.5
TAR626G1113 Trochodendron aralioides HOM05D001327 ORTHO05D005399 4.0e-12 74.7 41 80.5
ClCG08G003060 Citrullus lanatus HOM05D001327 ORTHO05D005399 5.2e-12 74.3 41 78.0
FAN26G1748 Fragaria x ananassa HOM05D001327 ORTHO05D005399 5.2e-12 74.3 41 80.5
MD02G1034500 Malus domestica HOM05D001327 ORTHO05D005399 5.2e-12 74.3 41 78.0
Hund09138 Selenicereus undatus HOM05D001327 ORTHO05D005399 5.2e-12 74.3 41 80.5
CANSAT11G1188 Cannabis sativa HOM05D001327 ORTHO05D005399 6.8e-12 73.9 41 75.6
vmacro00313 Vaccinium macrocarpon HOM05D000020 ORTHO05D000282 6.8e-12 73.9 38 92.1
ECA240G0392 Erigeron canadensis HOM05D001327 ORTHO05D005399 8.9e-12 73.6 41 78.0
FAN28G2560 Fragaria x ananassa HOM05D001327 ORTHO05D005399 8.9e-12 73.6 41 78.0
Gohir.D06G055300 Gossypium hirsutum HOM05D001327 ORTHO05D005399 8.9e-12 73.6 45 73.3
Lsat_1_v5_gn_7_45660 Lactuca sativa HOM05D001327 ORTHO05D005399 8.9e-12 73.6 41 78.0
Lalb_Chr11g0072051 Lupinus albus HOM05D001327 ORTHO05D005399 1.2e-11 73.2 41 78.0
TWI32G0662 Tripterygium wilfordii HOM05D001327 ORTHO05D005399 1.2e-11 73.2 41 78.0
HanXRQChr09g0242321 Helianthus annuus HOM05D001327 ORTHO05D005399 1.5e-11 72.8 41 80.5
MD15G1175300 Malus domestica HOM05D001327 ORTHO05D005399 1.5e-11 72.8 41 75.6
SHI18655 Sapria himalayana HOM05D001327 ORTHO05D005399 1.5e-11 72.8 41 78.0
Os09g0438400 Oryza sativa ssp. japonica HOM05D001327 ORTHO05D005399 2.0e-11 72.4 38 81.6
Phvul.009G197300 Phaseolus vulgaris HOM05D001327 ORTHO05D005399 2.0e-11 72.4 49 65.3
RcHm_v2.0_Chr2g0089031 Rosa chinensis HOM05D001327 ORTHO05D005399 2.0e-11 72.4 41 75.6
CSS0041205 Camellia sinensis var. sinensis HOM05D001327 ORTHO05D005399 2.6e-11 72.0 35 91.4
unitig_747.g21802 Utricularia gibba HOM05D001327 ORTHO05D005399 2.6e-11 72.0 45 68.9
PGR142G2283 Punica granatum HOM05D001327 ORTHO05D005399 3.4e-11 71.6 38 78.9
Ca_03162_v3 Cicer arietinum L. HOM05D001327 ORTHO05D005399 4.4e-11 71.2 41 78.0
HanXRQChr05g0140591 Helianthus annuus HOM05D001327 ORTHO05D005399 4.4e-11 71.2 41 75.6
RcHm_v2.0_Chr2g0088811 Rosa chinensis HOM05D001327 ORTHO05D005399 4.4e-11 71.2 41 73.2
TWI34G1767 Tripterygium wilfordii HOM05D001327 ORTHO05D005399 4.4e-11 71.2 41 73.2
Prupe.7G240800 Prunus persica HOM05D001327 ORTHO05D005399 5.7e-11 70.9 41 75.6
Lalb_Chr08g0234481 Lupinus albus HOM05D001327 ORTHO05D005399 9.8e-11 70.1 41 73.2
vmacro04821 Vaccinium macrocarpon HOM05D001056 ORTHO05D000902 9.8e-11 70.1 34 100.0
AUR62011113 Chenopodium quinoa HOM05D001327 ORTHO05D005399 1.3e-10 69.7 41 78.0
AUR62033491 Chenopodium quinoa HOM05D001327 ORTHO05D005399 1.3e-10 69.7 41 78.0
VMungo1309G1396 Vigna mungo HOM05D001327 ORTHO05D005399 1.3e-10 69.7 49 63.3
Zm00001eb313980 Zea mays HOM05D001327 ORTHO05D005399 1.3e-10 69.7 38 76.3
arahy.Tifrunner.gnm1.ann1.8WED6E Arachis hypogaea HOM05D001327 ORTHO05D005399 1.7e-10 69.3 41 73.2
TAR090G0001 Trochodendron aralioides HOM05D001327 ORTHO05D005399 1.7e-10 69.3 41 75.6
arahy.Tifrunner.gnm1.ann1.4EC4CX Arachis hypogaea HOM05D001327 ORTHO05D005399 2.2e-10 68.9 41 73.2
Glyma.04G148300 Glycine max HOM05D001327 ORTHO05D005399 2.2e-10 68.9 41 70.7
Medtr2g054370 Medicago truncatula HOM05D001327 ORTHO05D005399 2.2e-10 68.9 41 70.7
Gorai.004G277600 Gossypium raimondii HOM05D001327 ORTHO05D005399 4.9e-10 67.8 49 61.2
arahy.Tifrunner.gnm1.ann1.73D391 Arachis hypogaea HOM05D001327 ORTHO05D005399 6.3e-10 67.4 41 65.9
arahy.Tifrunner.gnm1.ann1.F76PC0 Arachis hypogaea HOM05D001327 ORTHO05D005399 6.3e-10 67.4 41 65.9
arahy.Tifrunner.gnm1.ann1.XG8PKW Arachis hypogaea HOM05D001638 ORTHO05D005197 6.3e-10 67.4 41 73.2
CDE07G0693 Ceratophyllum demersum HOM05D001327 ORTHO05D005399 6.3e-10 67.4 41 70.7
Lj1g0004272 Lotus japonicus HOM05D001327 ORTHO05D005399 1.4e-09 66.2 41 68.3
CSS0040252 Camellia sinensis var. sinensis HOM05D001327 ORTHO05D005399 1.8e-09 65.9 54 63.0
Glyma.06G216800 Glycine max HOM05D001327 ORTHO05D005399 1.8e-09 65.9 41 68.3
SMO358G0053 Selaginella moellendorffii HOM05D001327 ORTHO05D005399 1.8e-09 65.9 41 63.4
HPP92_016221 Vanilla planifolia HOM05D001327 ORTHO05D005399 2.4e-09 65.5 49 61.2
HPP92_016245 Vanilla planifolia HOM05D001327 ORTHO05D005399 2.4e-09 65.5 49 61.2
TPR.G31097 Trifolium pratense HOM05D001327 ORTHO05D005399 4.1e-09 64.7 41 65.9
Nn8g39414 Nelumbo nucifera HOM05D001327 ORTHO05D005399 5.4e-09 64.3 41 68.3
Aqoxy7G03725 Aquilegia oxysepala HOM05D001327 ORTHO05D005399 9.2e-09 63.5 41 68.3
THA.LOC104808999 Tarenaya hassleriana HOM05D001327 ORTHO05D005399 9.2e-09 63.5 41 61.0
BraA07t29498Z Brassica rapa HOM05D001327 ORTHO05D005399 2.7e-08 62.0 41 61.0
Aa31LG5G9080 Aethionema arabicum HOM05D001327 ORTHO05D005399 4.5e-08 61.2 41 58.5
Dinv36539 Davidia involucrata HOM05D001327 ORTHO05D005399 4.5e-08 61.2 31 90.3
BcaC02g10832 Brassica carinata HOM05D001327 ORTHO05D005399 5.9e-08 60.8 41 61.0
A07p17790 Brassica napus HOM05D001327 ORTHO05D005399 5.9e-08 60.8 41 61.0
C04p24660 Brassica napus HOM05D001327 ORTHO05D005399 5.9e-08 60.8 41 61.0
BolC4t23972H Brassica oleracea HOM05D001327 ORTHO05D005399 5.9e-08 60.8 41 61.0
Mapoly0033s0126 Marchantia polymorpha HOM05D001327 ORTHO05D005399 5.9e-08 60.8 46 54.3
Sp4g08910 Schrenkiella parvula HOM05D001327 ORTHO05D005399 5.9e-08 60.8 41 58.5
THA.LOC104815261 Tarenaya hassleriana HOM05D001327 ORTHO05D005399 5.9e-08 60.8 41 63.4
AL4G20030 Arabidopsis lyrata HOM05D001327 ORTHO05D005399 1.3e-07 59.7 41 56.1
AT2G26830 Arabidopsis thaliana HOM05D001327 ORTHO05D005399 1.3e-07 59.7 41 56.1
Carub.0004s0730 Capsella rubella HOM05D001327 ORTHO05D005399 1.3e-07 59.7 41 56.1
Thhalv10002015m.g Eutrema salsugineum HOM05D001327 ORTHO05D005399 1.3e-07 59.7 37 62.2
AagrBONN_evm.TU.Sc2ySwM_117.4090 Anthoceros agrestis HOM05D001327 ORTHO05D005399 2.3e-07 58.9 40 60.0
SGA_v2.0_scaffold229G43327 Striga asiatica HOM05D001327 ORTHO05D005399 5.0e-07 57.8 31 83.9
RcHm_v2.0_Chr2g0088981 Rosa chinensis HOM05D001327 ORTHO05D005399 1.5e-06 56.2 31 71.0
CBR_g19107 Chara braunii HOM05D001327 ORTHO05D005399 4.3e-06 54.7 39 51.3
Nitab4.5_0025584g0010 Nicotiana tabacum HOM05D001327 ORTHO05D010136 9.5e-06 53.5 25 92.0


User provided reference genes

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